RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11069
(391 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 37.0 bits (85), Expect = 0.014
Identities = 39/218 (17%), Positives = 60/218 (27%), Gaps = 12/218 (5%)
Query: 112 SCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHM--TS 169
S +S+ + + D K + C F L RH+ +
Sbjct: 254 SSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVN 313
Query: 170 HD-EDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM----KQY 224
H E K + C C K F+ LK H++ H + L KF +
Sbjct: 314 HSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQ 373
Query: 225 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLV-CKGCGKQFKVPCR 283
S + C ++F ++L H H++ C K F
Sbjct: 374 SLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYN 433
Query: 284 LREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKS 321
L H K + F L H K
Sbjct: 434 LIPHKK--IHTNHAPLLCSILKS--FRRDLDLSNHGKD 467
Score = 36.2 bits (83), Expect = 0.023
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 7/153 (4%)
Query: 223 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPC 282
S E+S+ S P + + KS ++ S ++
Sbjct: 214 SSSDQNLENSSSSLPLTTNSQLSPKSL--LSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271
Query: 283 RLREHYKAVHESTKNFK-CTHDGCKLLFSSKSALKRHNKSKH---LNMRMFPCPLVTCGK 338
+ C + FS S L RH +S + +++ F CP CGK
Sbjct: 272 SSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGK 331
Query: 339 SFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSY 371
F R++ L+ H+L H + + +
Sbjct: 332 LFSRNDALKRHILLH-TSISPAKEKLLNSSSKF 363
Score = 33.5 bits (76), Expect = 0.17
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 111 WSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
+SCP C + K H+L H P K KL +++ ++
Sbjct: 322 FSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF-SPLLNNEPPQSLQQYKD 380
Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE 230
++ K +C + F SNL +H++ H C+ C + F H K
Sbjct: 381 LKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKI 440
Query: 231 HSN 233
H+N
Sbjct: 441 HTN 443
Score = 31.2 bits (70), Expect = 0.87
Identities = 40/205 (19%), Positives = 61/205 (29%), Gaps = 9/205 (4%)
Query: 168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 227
+S D + + + S+ K +L + C F + H
Sbjct: 249 SSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRH 308
Query: 228 LKE---HSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED----LVCKGCGKQFKV 280
L+ P+ C Y CGK F +LK H +H + L
Sbjct: 309 LRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368
Query: 281 PCRLREHYKAVHES-TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKS 339
+ + K + + C F S L H HL+ R + C C KS
Sbjct: 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI-ITHLSFRPYNCKNPPCSKS 427
Query: 340 FLRSEHLQEHMLQHNENKPKFTCPY 364
F R +L H H + P
Sbjct: 428 FNRHYNLIPHKKIHTNHAPLLCSIL 452
>gnl|CDD|151254 pfam10804, DUF2538, Protein of unknown function (DUF2538). This
family of proteins has no known function.
Length = 156
Score = 34.6 bits (79), Expect = 0.030
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 71 LTVSWVYEEDAITEALQSLGINKEYFISS 99
L SWVY+E+ ITE ++S+ + +Y I++
Sbjct: 86 LPFSWVYDENGITETMKSISVPLQYLIAA 114
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 32.4 bits (73), Expect = 0.45
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
D K Y C + CNK++ + LK HM HG ++L + M +S K
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHM-LHGH----QNQKLHENPSPEKMNIFSAKDK--- 397
Query: 233 NVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT 264
PY C+ C K + + LK H R H
Sbjct: 398 ----PYRCEV--CDKRYKNLNGLKYH-RKHSH 422
Score = 31.6 bits (71), Expect = 0.82
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
K +KC +GC + +++ LK H H N ++ P F +
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSA------------K 395
Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 385
+KP + C C Y + L H KH H
Sbjct: 396 DKP-YRCEV--CDKRYKNLNGLKYHRKHSH 422
Score = 28.9 bits (64), Expect = 5.5
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 106 KKQQLWSCPIVNCNFTSVNLNTFKIHLLK-HFDKKPFKCKLTTANNTPCMWGFFSKHKLL 164
K + + CP+ CN N N K H+L H ++K N +P
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQK------LHENPSP------------ 386
Query: 165 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 197
M K Y C+ C+KR+ L+ LK H
Sbjct: 387 EKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYH 417
>gnl|CDD|219584 pfam07800, DUF1644, Protein of unknown function (DUF1644). This
family consists of sequences found in a number of
hypothetical plant proteins of unknown function. The
region of interest contains nine highly conserved
cysteine residues and is approximately 160 amino acids
in length, and is probably a zinc-binding domain.
Length = 148
Score = 29.2 bits (66), Expect = 1.8
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 231 HSNVSAPYMCD----YKGCGKSFYLMASLK--SHQRVHVTNPEDLVCKGCG---KQFKVP 281
H PYMCD + C F S K S + + +L C C K + V
Sbjct: 23 HDKGCRPYMCDTSHRHSNCLDQFKKAYSKKRNSGKDSEKEDSTELTCPLCRGEVKGWTVV 82
Query: 282 CRLREHYKAVHESTKNFKCTHDGCKLLFS-SKSALKRHNKSKH 323
R + S C +GC FS + L++H +S+H
Sbjct: 83 EPARRFLNSKKRS-----CMQEGCS--FSGTYRELRKHARSEH 118
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 26.2 bits (58), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 182 KNCNKRFTTLSNLKMHMVRH 201
+C K F+ SNLK H+ H
Sbjct: 3 PDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 29.8 bits (67), Expect = 3.1
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 26/98 (26%)
Query: 269 LVCKGCGKQFKVPCR---LREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
+ C+ C K + +P R L E Y + H N C HDGC ++ + A K H H
Sbjct: 408 VECRNC-KHY-IPSRSIALHEAYCSRH----NVVCPHDGCGIVLRVEEA-KNH---VHCE 457
Query: 326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 363
CG++F + E +++HM +E CP
Sbjct: 458 ---------KCGQAFQQGE-MEKHMKVFHE---PLQCP 482
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 29.2 bits (65), Expect = 4.0
Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 205 LTLCCEELGCGRKFQTMKQYSTHLK-EHSNVSAPYMCDYKG---CGKSFYLMASLKSHQR 260
L+ C + C R+ ++K+ H K +H V K + ++L+ H+
Sbjct: 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHK- 208
Query: 261 VHVTNPED-----LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSAL 315
+ E+ +C C F LR H + HE+ F S L
Sbjct: 209 -NGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDL 267
Query: 316 KRHNKSKHLNMRMFPCPLVTC--GKSFLRSEH--LQEHMLQHNEN----KPKF 360
+ H ++ H + C TC GK ++ H L EH+ + ++
Sbjct: 268 EAHFRNAH-----YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNARLSEIP 315
>gnl|CDD|185064 PRK15109, PRK15109, antimicrobial peptide ABC transporter
periplasmic binding protein SapA; Provisional.
Length = 547
Score = 28.9 bits (65), Expect = 6.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 22 LSPSLACLVSLVGSASALIPRTVCGDILENMFVFCV 57
LS L L G A A DI ++ FV+CV
Sbjct: 5 LSSLLVIAGLLSGQAIAAPESPPHADIRQSGFVYCV 40
>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX
and nucleoredoxin (NRX) subfamily; TryX and NRX are
thioredoxin (TRX)-like protein disulfide oxidoreductases
that alter the redox state of target proteins via the
reversible oxidation of an active center CXXC motif.
TryX is involved in the regulation of oxidative stress
in parasitic trypanosomatids by reducing TryX
peroxidase, which in turn catalyzes the reduction of
hydrogen peroxide and organic hydroperoxides. TryX
derives reducing equivalents from reduced trypanothione,
a polyamine peptide conjugate unique to trypanosomatids,
which is regenerated by the NADPH-dependent flavoprotein
trypanothione reductase. Vertebrate NRX is a 400-amino
acid nuclear protein with one redox active TRX domain
containing a CPPC active site motif followed by one
redox inactive TRX-like domain. Mouse NRX transcripts
are expressed in all adult tissues but is restricted to
the nervous system and limb buds in embryos. Plant NRX,
longer than the vertebrate NRX by about 100-200 amino
acids, is a nuclear protein containing a redox inactive
TRX-like domain between two redox active TRX domains.
Both vertebrate and plant NRXs show thiol oxidoreductase
activity in vitro. Their localization in the nucleus
suggests a role in the redox regulation of nuclear
proteins such as transcription factors.
Length = 131
Score = 27.6 bits (62), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 281 PCR-----LREHYKAVHESTKNF 298
PCR L E Y+ + ES KNF
Sbjct: 32 PCRAFTPKLVEFYEKLKESGKNF 54
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 28.5 bits (63), Expect = 8.7
Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 34/174 (19%)
Query: 40 IPRTVCG----DILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEY 95
+PRTV + + + + ++ I P + V W EE + G +
Sbjct: 109 VPRTVLSKSTDSDISSTALEKIERMEIAIKPGDEDERVLWRDEEVTCVHGC-NEGPSSIE 167
Query: 96 FISSTGGKNSK---KQQLWSCPIVNCNFTSVNLNTFKI----HLLKHFDKKPFKCKLTTA 148
+ G K S K LW C ++C + + H L H+++
Sbjct: 168 MGNIGGLKCSLCDLKTNLWVC--LSCGYVGCGRMQYGAEGNGHALSHYEE---------- 215
Query: 149 NNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHG 202
P L ++ D D CY CD R SN + G
Sbjct: 216 TQHPLA-------VKLPSLSKEDCDIYCYLCDS---EIRSRYNSNENSVTIDFG 259
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.431
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,245,161
Number of extensions: 1617883
Number of successful extensions: 1742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1728
Number of HSP's successfully gapped: 60
Length of query: 391
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 292
Effective length of database: 6,546,556
Effective search space: 1911594352
Effective search space used: 1911594352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.0 bits)