RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11069
(391 letters)
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 95.7 bits (239), Expect = 1e-23
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 25/202 (12%)
Query: 131 HLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTT 190
K + C + C + KL H+ H +K +PC ++ C K FT+
Sbjct: 3 EKALPVVYKRYIC-----SFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTS 56
Query: 191 LSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-----SAPYMCDYK 243
L +L H + H G K T C+ GC +F T ++K+H N Y+C ++
Sbjct: 57 LHHLTRHSLTHTGEKNFT--CDSDGCDLRFTT----KANMKKHFNRFHNIKICVYVCHFE 110
Query: 244 GCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCT 301
CGK+F LK HQ H T C GC K+F +P RL+ H K VH K
Sbjct: 111 NCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD- 167
Query: 302 HDGCKLLFSSKSALKRHNKSKH 323
D C + + + +H H
Sbjct: 168 -DSCSFVGKTWTLYLKHVAECH 188
Score = 82.6 bits (205), Expect = 7e-19
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHES 294
Y+C + CG ++ L++H H T + CK GC K F L H H
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTG 69
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM-FPCPLVTCGKSFLRSEHLQEHMLQH 353
KNF C DGC L F++K+ +K+H H + C CGK+F + L+ H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 354 NENKPKFTCPYQDCLMSYVAKSSLYAH 380
+ P + CP++ C + S L H
Sbjct: 130 TQQLP-YECPHEGCDKRFSLPSRLKRH 155
Score = 81.1 bits (201), Expect = 3e-18
Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
+ HL KH +KPF C C GF S H L RH +H +K + CD C+ RF
Sbjct: 31 QAHLCKHTGEKPFPC-----KEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRF 84
Query: 189 TTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 246
TT +N+K H R K C CG+ F+ Q H H+ PY C ++GC
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCD 143
Query: 247 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE 293
K F L + LK H++VH C K +H H+
Sbjct: 144 KRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 46.0 bits (110), Expect = 4e-06
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
K + C+ C ++ L+ H KH + FPC C K F HL H L H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAH 380
K FTC C + + K+++ H
Sbjct: 70 EKN-FTCDSDGCDLRFTTKANMKKH 93
Score = 31.4 bits (72), Expect = 0.32
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 126 NTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH--DEDKKCYPCDQKN 183
N K+H H + P++C + C F +L RH H KK C
Sbjct: 120 NQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSF-- 172
Query: 184 CNKRFTTLSNLKMHMVRH 201
K +T LK H
Sbjct: 173 VGKTWTLY--LKHVAECH 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 87.3 bits (217), Expect = 8e-21
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLK 229
D C++ F + L H+ K C GC R+ + K L
Sbjct: 2 TDCRWDG--CSQEFDSQEQLVHHINSEHIHGERKEFV--CHWGGCSRELRPFKAQY-MLV 56
Query: 230 EHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 284
H P+ C ++GC KS+ + +LK+H R H T + +C+ GC K F
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDR 115
Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNK 320
+H H + K + C GC ++ S+L++H K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 82.3 bits (204), Expect = 5e-19
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 193
H ++K F C + + F +++ L+ HM H E K + C + C K ++ L N
Sbjct: 29 HGERKEFVCH--WGGCSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKSYSRLEN 84
Query: 194 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN----VSAPYMCDYKGCGK 247
LK H+ H G KP CE GC + F ++ +H N PY+C GC K
Sbjct: 85 LKTHLRSHTGEKPYM--CEHEGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 248 SFYLMASLKSHQRVH 262
+ +SL+ H +
Sbjct: 139 RYTDPSSLRKHVKTV 153
Score = 77.6 bits (192), Expect = 2e-17
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTS---HDEDK--KCYPCDQKNCNKRFTTLSN 193
+ C F S+ +L+ H+ S H E K C+ + F
Sbjct: 2 TDCRWD-------GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54
Query: 194 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 251
L +HM RH G KP C GC + + ++ THL+ H+ PYMC+++GC K+F
Sbjct: 55 LVVHMRRHTGEKPHK--CTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSN 111
Query: 252 MASLKSHQ-RVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 292
+ HQ R H +N + VCK GC K++ P LR+H K VH
Sbjct: 112 ASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 76.9 bits (190), Expect = 4e-17
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 15/155 (9%)
Query: 237 PYMCDYKGCGKSFYLMASLKSH---QRVHVTNPEDLVCKGCG-----KQFKVPCRLREHY 288
GC + F L H + +H ++ VC G + FK L H
Sbjct: 3 DCRW--DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQE 348
+ H K KCT +GC+ +S LK H +S H + + C C K+F + +
Sbjct: 60 R-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 349 HMLQ-HNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
H + H+ KP + C C Y SSL H+K
Sbjct: 118 HQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVK 151
Score = 71.1 bits (175), Expect = 5e-15
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHEST--KNFKCTHDGCKLL---FSSKSALKRHNKSKHLN 325
GC ++F +L H + H K F C GC F ++ L H
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH------- 58
Query: 326 MRM------FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYA 379
MR C C KS+ R E+L+ H+ H KP + C ++ C ++ S
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAK 117
Query: 380 HLKHVHSTNK 389
H HS K
Sbjct: 118 HQNRTHSNEK 127
Score = 42.2 bits (100), Expect = 5e-05
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFP-----CPLVTCGKSFLRSEHLQEHM 350
+ + DGC F S+ L H S+H++ + F L HM
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
+H KP C ++ C SY +L H
Sbjct: 60 RRHTGEKP-HKCTFEGCRKSYSRLENLKTH 88
Score = 32.2 bits (74), Expect = 0.15
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 330 PCPLVTCGKSFLRSEHLQEHMLQ---HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV 384
C C + F E L H+ H E K F C + C + Y + H+
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 84.9 bits (211), Expect = 3e-20
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
C +KGC K F ++++ H H VC CGK F +L+ H + VH K
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRH-QLVHTGEK 61
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEHM 350
F+CT +GC FS L+ H +R+ + CP C K F +S +L+ H+
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTH-------VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Query: 351 LQHNENKP 358
L H + K
Sbjct: 115 LTHAKAKN 122
Score = 76.0 bits (188), Expect = 3e-17
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
+ + C K C K F S ++ H+ HG + C E CG+ F S+ LK H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAE--CGKAFV----ESSKLKRH 53
Query: 232 SNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLRE 286
V P+ C ++GCGK F L +L++H R+H T P GC K+F L+
Sbjct: 54 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 287 H 287
H
Sbjct: 113 H 113
Score = 67.9 bits (167), Expect = 3e-14
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 137 DKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 196
+ + C + C F + +H+ +H + + C + C K F S LK
Sbjct: 2 EPRTIAC-----PHKGCTKMFRDNSAMRKHLHTHGP--RVHVCAE--CGKAFVESSKLKR 52
Query: 197 HMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYL 251
H + H G KP C GCG++F +L+ H + PY+C + GC K F
Sbjct: 53 HQLVHTGEKPFQ--CTFEGCGKRFSL----DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 252 MASLKSHQRVH 262
+LKSH H
Sbjct: 107 STNLKSHILTH 117
Score = 50.2 bits (121), Expect = 5e-08
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM-----FPCPLVTCGKSFLRSEHLQEHM 350
+ C H GC +F SA+++H + C CGK+F+ S L+ H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-------LHTHGPRVHVCA--ECGKAFVESSKLKRHQ 54
Query: 351 LQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
L H KP F C ++ C + +L H
Sbjct: 55 LVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
Score = 38.7 bits (91), Expect = 6e-04
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
K H L H +KPF+C C F L H+ H D+ Y C CNK+F
Sbjct: 51 KRHQLVHTGEKPFQC-----TFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKF 104
Query: 189 TTLSNLKMHMVRH 201
+NLK H++ H
Sbjct: 105 AQSTNLKSHILTH 117
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 81.2 bits (201), Expect = 1e-18
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 214 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH--------VTN 265
G Q +KQ + K C ++F M L +H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEA-QLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
C GK FK +L H + VH K F C GC +F+ LK H ++ H
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTG 117
Query: 326 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
+ F C C + F S ++HM H +K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPS 153
Score = 73.5 bits (181), Expect = 6e-16
Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 22/157 (14%)
Query: 245 CGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCT 301
G S + S + + K C + F L H H N C
Sbjct: 3 SGSSGQPIKQELSCKWID-EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 302 HDGCKL---LFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEHMLQ 352
+ C F +K L H +R+ FPCP CGK F RSE+L+ H
Sbjct: 62 WEECPREGKSFKAKYKLVNH-------IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK 389
H KP F C ++ C + S H HVH+++K
Sbjct: 115 HTGEKP-FKCEFEGCDRRFANSSDRKKH-MHVHTSDK 149
Score = 71.9 bits (177), Expect = 2e-15
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 24/157 (15%)
Query: 117 NCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH------ 170
+ + + + K C F + H+L+ H+T
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKK-------SCDRTFSTMHELVTHVTMEHVGGPE 54
Query: 171 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHL 228
+ CY + K F L H+ H G KP C GCG+ F S +L
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP--CPFPGCGKIFAR----SENL 108
Query: 229 KEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
K H P+ C+++GC + F + K H VH
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 74.1 bits (183), Expect = 2e-16
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 33/144 (22%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
+ + C CNKR+ LS+L+MH +H T G K
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKH----T--------GEK----------------- 35
Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
PY CD+K C + F LK HQR H T + CK C ++F L+ H + H
Sbjct: 36 --PYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDHLKTHTR-THTG 91
Query: 295 TKNFKCTHDGCKLLFSSKSALKRH 318
K F C C+ F+ L RH
Sbjct: 92 EKPFSCRWPSCQKKFARSDELVRH 115
Score = 74.1 bits (183), Expect = 2e-16
Identities = 42/129 (32%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
+PF C C +F L H H +K Y CD K+C +RF+ LK H
Sbjct: 5 RPFMC-----AYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 253
RH G KP C+ C RKF S HLK H+ P+ C + C K F
Sbjct: 59 RRHTGVKPFQ--CKT--CQRKFSR----SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 254 SLKSHQRVH 262
L H +H
Sbjct: 111 ELVRHHNMH 119
Score = 69.1 bits (170), Expect = 9e-15
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
P+MC Y GC K ++ ++ L+ H R H T P K C ++F +L+ H + H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQE 348
K F+C C+ FS LK H R F C +C K F RS+ L
Sbjct: 64 VKPFQCKT--CQRKFSRSDHLKTH-------TRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 349 HMLQH 353
H H
Sbjct: 115 HHNMH 119
Score = 47.9 bits (115), Expect = 3e-07
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
++H KH +KP++C + C F +L RH H K + C C ++F
Sbjct: 25 QMHSRKHTGEKPYQC-----DFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKT--CQRKF 76
Query: 189 TTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
+ +LK H H G KP + C C +KF S L H
Sbjct: 77 SRSDHLKTHTRTHTGEKPFS--CRWPSCQKKFAR----SDELVRH 115
Score = 44.8 bits (107), Expect = 3e-06
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
+ F C + GC + S L+ H R + C C + F RS+ L+ H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMH-------SRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
+H KP F C + C + L H
Sbjct: 58 QRRHTGVKP-FQC--KTCQRKFSRSDHLKTH 85
Score = 37.5 bits (88), Expect = 0.001
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
K H +H KPF+CK C F L H +H +K + C +C K+F
Sbjct: 55 KRHQRRHTGVKPFQCKT-------CQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKF 106
Query: 189 TTLSNLKMHMVRH 201
L H H
Sbjct: 107 ARSDELVRHHNMH 119
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 64.8 bits (159), Expect = 2e-12
Identities = 65/207 (31%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 157 FFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGC 214
F + +K Y C + C K F+ +L H H G KP C E C
Sbjct: 3 EFGSSSSVAQAALEPGEKP-YACPE--CGKSFSRSDHLAEHQRTHTGEKPYK--CPE--C 55
Query: 215 GRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC 271
G+ F L H PY C CGKSF A+L++HQR H T + C
Sbjct: 56 GKSFS----DKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTH-TGEKPYAC 108
Query: 272 KGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC 331
CGK F LR H + H K +KC C FS + L H ++ H + + C
Sbjct: 109 PECGKSFSQLAHLRAHQR-THTGEKPYKCPE--CGKSFSREDNLHTHQRT-HTGEKPYKC 164
Query: 332 PLVTCGKSFLRSEHLQEHMLQHNENKP 358
P CGKSF R + L H H K
Sbjct: 165 P--ECGKSFSRRDALNVHQRTHTGKKT 189
Score = 60.9 bits (149), Expect = 3e-11
Identities = 63/198 (31%), Positives = 81/198 (40%), Gaps = 25/198 (12%)
Query: 188 FTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDY 242
S+ G KP C E CG+ F S HL EH PY C
Sbjct: 3 EFGSSSSVAQAALEPGEKPYA--CPE--CGKSFS----RSDHLAEHQRTHTGEKPYKC-- 52
Query: 243 KGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
CGKSF L HQR H T + C CGK F LR H + H K + C
Sbjct: 53 PECGKSFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPE 110
Query: 303 DGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
C FS + L+ H ++ H + + CP CGKSF R ++L H H KP + C
Sbjct: 111 --CGKSFSQLAHLRAHQRT-HTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP-YKC 164
Query: 363 PYQDCLMSYVAKSSLYAH 380
+C S+ + +L H
Sbjct: 165 --PECGKSFSRRDALNVH 180
Score = 59.0 bits (144), Expect = 1e-10
Identities = 59/185 (31%), Positives = 75/185 (40%), Gaps = 29/185 (15%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
KP+ C C F L H +H +K Y C + C K F+ +L H
Sbjct: 20 KPYACP-------ECGKSFSRSDHLAEHQRTHTGEKP-YKCPE--CGKSFSDKKDLTRHQ 69
Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 253
H G KP C E CG+ F +L+ H PY C CGKSF +A
Sbjct: 70 RTHTGEKPYK--CPE--CGKSF----SQRANLRAHQRTHTGEKPYAC--PECGKSFSQLA 119
Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKS 313
L++HQR H T + C CGK F L H + H K +KC C FS +
Sbjct: 120 HLRAHQRTH-TGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRD 175
Query: 314 ALKRH 318
AL H
Sbjct: 176 ALNVH 180
Score = 46.7 bits (112), Expect = 3e-06
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 248 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKL 307
S + +S + + + C CGK F L EH + H K +KC C
Sbjct: 2 SEFGSSSSVAQAALE-PGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPE--CGK 57
Query: 308 LFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
FS K L RH ++ H + + CP CGKSF + +L+ H H KP + CP +C
Sbjct: 58 SFSDKKDLTRHQRT-HTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKP-YACP--EC 111
Query: 368 LMSYVAKSSLYAH 380
S+ + L AH
Sbjct: 112 GKSFSQLAHLRAH 124
Score = 45.5 bits (109), Expect = 6e-06
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
KP+KC C F + L H +H +K Y C + C K F+ L++L+ H
Sbjct: 76 KPYKCP-------ECGKSFSQRANLRAHQRTHTGEKP-YACPE--CGKSFSQLAHLRAHQ 125
Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKSFYLMA 253
H G KP C E CG+ F +L H PY C CGKSF
Sbjct: 126 RTHTGEKPYK--CPE--CGKSFS----REDNLHTHQRTHTGEKPYKC--PECGKSFSRRD 175
Query: 254 SLKSHQRVH 262
+L HQR H
Sbjct: 176 ALNVHQRTH 184
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 61.1 bits (149), Expect = 4e-12
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 37/119 (31%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST- 295
+ CDY GC K + + LK+H R H T
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTH--------------------------------TG 42
Query: 296 -KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
K +KCT +GC F+ L RH KH + F C + C +SF RS+HL HM +H
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 58.0 bits (141), Expect = 5e-11
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
++ + CD C K +T S+LK H+ H KP C GC +F + + H ++H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--CTWEGCDWRFARSDELTRHYRKH 70
Query: 232 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
+ P+ C C +SF L H + H
Sbjct: 71 TGAK-PFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 51.1 bits (123), Expect = 1e-08
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 98 SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGF 157
S + G + +K+++ C C + K HL H +KP+KC C W F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC-----TWEGCDWRF 57
Query: 158 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+L RH H K + C CN+ F+ +L +HM RH
Sbjct: 58 ARSDELTRHYRKHTGAKP-FQCGV--CNRSFSRSDHLALHMKRH 98
Score = 50.7 bits (122), Expect = 2e-08
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNE 355
+ C + GC +++ S LK H H + + C C F RS+ L H +H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 356 NKPKFTCPYQDCLMSYVAKSSLYAHLK 382
KP F C C S+ L H+K
Sbjct: 73 AKP-FQCG--VCNRSFSRSDHLALHMK 96
Score = 41.8 bits (99), Expect = 3e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 309 FSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
S R+ C C K + +S HL+ H+ H KP + C ++ C
Sbjct: 3 SGSSGPDLEK-------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGC 53
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 61.0 bits (149), Expect = 4e-12
Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 37/119 (31%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST- 295
+ CDY GCGK++ + LK+H R H T
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTH--------------------------------TG 32
Query: 296 -KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
K + C DGC F+ L RH KH R F C C ++F RS+HL HM +H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 54.5 bits (132), Expect = 6e-10
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
+ CD C K +T S+LK H+ H KP C+ GCG KF + + H ++H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH--CDWDGCGWKFARSDELTRHYRKH 60
Query: 232 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
+ P+ C C ++F L H + H
Sbjct: 61 TGHR-PFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 49.1 bits (118), Expect = 5e-08
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
T C + GC ++ S LK H H + + C CG F RS+ L H +H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 355 ENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
++P F C C ++ L H+K
Sbjct: 62 GHRP-FQCQ--KCDRAFSRSDHLALHMK 86
Score = 44.8 bits (107), Expect = 2e-06
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 113 CPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 172
C C T + K HL H +KP+ C + C W F +L RH H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-----DWDGCGWKFARSDELTRHYRKHTG 62
Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ + C + C++ F+ +L +HM RH
Sbjct: 63 HRP-FQCQK--CDRAFSRSDHLALHMKRH 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 59.5 bits (145), Expect = 8e-12
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
+ C GC +FS++ L H K +H++ + F CP CGKSF +HL+EHM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 352 QHNENKPKFTCP 363
H++ + + C
Sbjct: 62 LHSDTRD-YICE 72
Score = 53.7 bits (130), Expect = 1e-09
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHM-VRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
PCD C + F+ L H +H K + C E CG+ F + HLKEH
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPACGKSF----NFKKHLKEH 59
Query: 232 SNV---SAPYMCDYKGCGKSF 249
+ + Y+C++ G S
Sbjct: 60 MKLHSDTRDYICEF--SGPSS 78
Score = 49.1 bits (118), Expect = 4e-08
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHM-LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST 387
PC CG+ F ++L H QH K F+CP C S+ K L H +HS
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEH-MKLHSD 65
Query: 388 NK 389
+
Sbjct: 66 TR 67
Score = 48.7 bits (117), Expect = 6e-08
Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 32/104 (30%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
CD+ GCG+ F L H++ H K
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKY-----------------------------QHIHQK 37
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF 340
+F C C F+ K LK H K H + R + C G S
Sbjct: 38 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE--FSGPSS 78
Score = 42.2 bits (100), Expect = 1e-05
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
C C F ++ L H +K + C + C K F +LK HM
Sbjct: 6 SGMPCDFPG-----CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 199 VRHG--KPLTLCCEELGCGRKF 218
H + CE G
Sbjct: 61 KLHSDTRDYI--CEF--SGPSS 78
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 58.8 bits (143), Expect = 2e-11
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 295
Y+C ++ CGK+F LK HQ H T C GC K+F +P RL+ H K VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKH 323
K D C + + + +H H
Sbjct: 60 PCKKD--DSCSFVGKTWTLYLKHVAECH 85
Score = 56.1 bits (136), Expect = 2e-10
Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 32/116 (27%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 236
Y C +NC K F + LK+H H T
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH------------------------TQQL------- 30
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
PY C ++GC K F L + LK H++VH C K +H H
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 49.5 bits (119), Expect = 3e-08
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
+ C + C F + LK H + H + CP C K F L+ H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 358 PKFTCPYQDCLMSYVAKSSLYAHLKHVH 385
C + H+ H
Sbjct: 61 C-KKD--DSCSFVGKTWTLYLKHVAECH 85
Score = 39.1 bits (92), Expect = 2e-04
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 328 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
M+ C CGK+F + L+ H H + P + CP++ C + S L H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 52
Score = 39.1 bits (92), Expect = 2e-04
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 113 CPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 172
C NC N K+H H + P++C + C F +L RH H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 173 DK--KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K C K +T LK H
Sbjct: 59 YPCKKDDSCSF--VGKTWTLY--LKHVAECH 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 59.8 bits (146), Expect = 2e-11
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH--YKAVHES 294
C C K F LK H R H T + C CGK + L EH ++ S
Sbjct: 7 GVEC--PTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
+ F C+ C+ F + L+ H S H + C +C + F++ + LQ HM
Sbjct: 64 EQVFTCSV--CQETFRRRMELRLHMVS-HTGEMPYKCS--SCSQQFMQKKDLQSHM 114
Score = 44.4 bits (106), Expect = 5e-06
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
+C C F SK+ L H H +K + C + C K + NL H
Sbjct: 6 SGVECP-------TCHKKFLSKYYLKVHNRKHTGEKP-FECPK--CGKCYFRKENLLEHE 55
Query: 199 VRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 253
R+ + T C C F+ + H+ H+ PY C C + F
Sbjct: 56 ARNCMNRSEQVFT--CSV--CQETFRRRMELRLHMVSHTG-EMPYKC--SSCSQQFMQKK 108
Query: 254 SLKSHQ-RVH 262
L+SH ++H
Sbjct: 109 DLQSHMIKLH 118
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 58.6 bits (143), Expect = 2e-11
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
+ Y C ++C++RF+ +L H+ H G KP C C R F S HL H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRI--CMRNF----SRSDHLTTHI 54
Query: 233 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ CD CG+ F K H ++H
Sbjct: 55 RTHTGEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 55.2 bits (134), Expect = 3e-10
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
PY C + C + F SL H R+H T + C+ C + F L H + H K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 297 NFKCTHDGCKLLFSSKSALKRH 318
F C C F+ KRH
Sbjct: 62 PFACDI--CGRKFARSDERKRH 81
Score = 42.5 bits (101), Expect = 1e-05
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
+ + C + C FS +L RH +R+ F C C ++F RS+HL H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-------IRIHTGQKPFQCR--ICMRNFSRSDHLTTH 53
Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
+ H KP F C C + H K
Sbjct: 54 IRTHTGEKP-FACD--ICGRKFARSDERKRHTK 83
Score = 34.7 bits (81), Expect = 0.007
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
H+ H +KPF+C CM F L H+ +H +K + CD C ++F
Sbjct: 23 TRHIRIHTGQKPFQC-------RICMRNFSRSDHLTTHIRTHTGEKP-FACDI--CGRKF 72
Query: 189 TTLSNLKMHMVRH 201
K H H
Sbjct: 73 ARSDERKRHTKIH 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 52.1 bits (126), Expect = 6e-09
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ES 294
C + CGK F + L H+ H + + C CG +FK R+ H H
Sbjct: 7 GVAC--EICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSV 62
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKH 323
K + C C FS L H K H
Sbjct: 63 GKPYICQS--CGKGFSRPDHLNGHIKQVH 89
Score = 39.8 bits (94), Expect = 1e-04
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN- 354
C C +F L RH S H + + CP CG F R + + H+ H+
Sbjct: 6 SGVACEI--CGKIFRDVYHLNRHKLS-HSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDG 60
Query: 355 -ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
KP + C Q C + L H+K VHS
Sbjct: 61 SVGKP-YIC--QSCGKGFSRPDHLNGHIKQVHS 90
Score = 36.3 bits (85), Expect = 0.002
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
C+ C F + L RH SH +K Y C C RF + H+
Sbjct: 6 SGVACE-------ICGKIFRDVYHLNRHKLSHSGEKP-YSCPV--CGLRFKRKDRMSYHV 55
Query: 199 VRH----GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
H GKP C+ CG+ F HL H
Sbjct: 56 RSHDGSVGKPYI--CQS--CGKGF----SRPDHLNGH 84
Score = 33.2 bits (77), Expect = 0.020
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD-EDKKCYPCDQKNCNKRFTTLSNLKMH 197
KP+ C C F K ++ H+ SHD K Y C C K F+ +L H
Sbjct: 34 KPYSCP-------VCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGH 84
Query: 198 MVR 200
+ +
Sbjct: 85 IKQ 87
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.7 bits (119), Expect = 3e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK--KCYPCDQKNCNKRFTTLSNLKM 196
+C++ C + K L H H E +PC+ C KRF ++
Sbjct: 6 SGLQCEI-------CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAA 56
Query: 197 HMVRHGKPLTLCCEE 211
H + L L +E
Sbjct: 57 HRSKSHPALLLAPQE 71
Score = 47.4 bits (113), Expect = 2e-07
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL--VCKGCGKQFKVPCRLREHYKAVHES 294
C+ CG + ASL HQR H L C+ CGK+F+ P + H H +
Sbjct: 7 GLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 295 TK 296
Sbjct: 65 LL 66
Score = 44.7 bits (106), Expect = 1e-06
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 32/102 (31%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 236
C+ C ++L H +H + +
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETV---------AAL------------------- 37
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
+ C++ CGK F S+ +H+ + G
Sbjct: 38 RFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNK--SKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+C C K++L H + ++ + FPC CGK F + + + H +
Sbjct: 6 SGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKS 61
Query: 354 NENKPKFTC 362
+
Sbjct: 62 HPALLLAPQ 70
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNEN---KPKFTCPYQDCLMSYVAKSSLYAHLKHVH 385
C + CG + + L H +H E F C + C + S+ AH H
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALR-FPCEF--CGKRFEKPDSVAAHRSKSH 62
Query: 386 S 386
Sbjct: 63 P 63
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.1 bits (115), Expect = 9e-08
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ + C + C FS L RH H + F C + C ++F RS+HL H+ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72
Score = 42.7 bits (101), Expect = 8e-06
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 187 RFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 246
++NL ++V +P C C R+F + + H++ H+ P+ C C
Sbjct: 2 EPHPMNNLLNYVVPKMRPYA--CPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRI--CM 56
Query: 247 KSFYLMASLKSHQRVH 262
++F L +H R H
Sbjct: 57 RNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 2e-05
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 125 LNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC 184
+N +++ +P+ C C F +L RH+ H K + C C
Sbjct: 6 MNNLLNYVVPK--MRPYAC-----PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRI--C 55
Query: 185 NKRFTTLSNLKMHMVRH 201
+ F+ +L H+ H
Sbjct: 56 MRNFSRSDHLTTHIRTH 72
Score = 41.1 bits (97), Expect = 3e-05
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 225 STHLKEHSNVSA-PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR 283
+L + PY C + C + F L H R+H T + C+ C + F
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64
Query: 284 LREHYK 289
L H +
Sbjct: 65 LTTHIR 70
Score = 39.6 bits (93), Expect = 8e-05
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 307 LLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 363
+ + L + K R + CP+ +C + F RS+ L H+ H KP F C
Sbjct: 1 MEPHPMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCR 53
Score = 38.1 bits (89), Expect = 3e-04
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 159 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGR 216
+ LL ++ + Y C ++C++RF+ L H+ H KP C C R
Sbjct: 5 PMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--CRI--CMR 57
Query: 217 KFQTMKQYSTHLKEHS 232
F +TH++ H+
Sbjct: 58 NFSRSDHLTTHIRTHT 73
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 48.2 bits (115), Expect = 9e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
++ C+H GC + S LK H + H + F C C + F RS+ L H
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 352 QH 353
H
Sbjct: 71 TH 72
Score = 45.5 bits (108), Expect = 7e-07
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 367
S+ + +R C CGK++ +S HL+ H H KP F+C ++ C
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGC 55
Score = 45.5 bits (108), Expect = 8e-07
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 192 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKS 248
S + + + C GCG+ + S+HLK H+ P+ C +KGC +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTGEKPFSCSWKGCERR 58
Query: 249 FYLMASLKSHQRVH 262
F L H+R H
Sbjct: 59 FARSDELSRHRRTH 72
Score = 39.7 bits (93), Expect = 8e-05
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 31/97 (31%)
Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 281
S + S ++C + GCGK+++ + LK+H R H
Sbjct: 3 SGSSGPQIDSSR-IRSHICSHPGCGKTYFKSSHLKAHTRTHT------------------ 43
Query: 282 CRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRH 318
K F C+ GC+ F+ L RH
Sbjct: 44 ------------GEKPFSCSWKGCERRFARSDELSRH 68
Score = 32.4 bits (74), Expect = 0.034
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 98 SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGF 157
SS +S + + C C T + K H H +KPF C + C F
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC-----SWKGCERRF 59
Query: 158 FSKHKLLRHMTSH 170
+L RH +H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 25.8 bits (57), Expect = 7.0
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 343 SEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHL 381
S + + + C + C +Y S L AH
Sbjct: 2 SSGSSGPQIDSSRIRS-HICSHPGCGKTYFKSSHLKAHT 39
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 47.9 bits (115), Expect = 1e-07
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
K + C C + F+ +L H+ H G KP C+ CGRKF S K H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRHR 51
Query: 233 NV--SAPYMCDYKGCGKSFYLMASLKSHQ---RVH 262
++ P + D + L++ +
Sbjct: 52 DIQHILPILEDK--VEELLSKNYHLENEVARLKKL 84
Score = 47.5 bits (114), Expect = 2e-07
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
P+ C C ++F L +H R H T + C CG++F + H H
Sbjct: 3 PFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--L 57
Query: 297 NFKCTHDGCKLLFSSKSALKRHNK 320
+ L S L+
Sbjct: 58 PILEDK--VEELLSKNYHLENEVA 79
Score = 41.3 bits (98), Expect = 3e-05
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
KPF+C CM F L H+ +H +K + CD C ++F K H
Sbjct: 2 KPFQC-------RICMRNFSRSDHLTTHIRTHTGEKP-FACDI--CGRKFARSDERKRHR 51
Query: 199 VRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
P+ ++ + HL+
Sbjct: 52 DIQHILPIL--EDK--VEELL----SKNYHLENE 77
Score = 40.6 bits (96), Expect = 6e-05
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRM------FPCPLVTCGKSFLRSEHLQEH 349
K F+C C FS L H +R F C CG+ F RS+ + H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTH-------IRTHTGEKPFACD--ICGRKFARSDERKRH 50
Query: 350 MLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKH 383
+ P L +
Sbjct: 51 RDIQHI-LP-ILE--DKVEELLSKNYHLENEVAR 80
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 48.6 bits (117), Expect = 1e-07
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
Y C CGKSF + H +H C CGK+FK+ L H K +H K
Sbjct: 10 LYPCQ---CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIK 64
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHL 346
++C C F + + RH + + ++ +
Sbjct: 65 PYECNI--CAKRFMWRDSFHRH---VTSCTKSYEAA--KAEQNTTEASGP 107
Score = 43.2 bits (103), Expect = 1e-05
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
K YPC C K FT S HM H G +P C CG+KF + HL H
Sbjct: 9 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYG--CGV--CGKKF----KMKHHLVGHM 57
Query: 233 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
+ PY C C K F S H+ V + + +
Sbjct: 58 KIHTGIKPYEC--NICAKRFMWRDSF--HRHVT-SCTKSYEAAKAEQNT 101
Score = 32.0 bits (74), Expect = 0.091
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
K + C+ C F K + RHM+ H + Y C C K+F +L HM
Sbjct: 9 KLYPCQ--------CGKSFTHKSQRDRHMSMHLGLRP-YGCGV--CGKKFKMKHHLVGHM 57
Query: 199 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLK 256
H G KP C C ++F M + S H S Y ++ +
Sbjct: 58 KIHTGIKPYE--CNI--CAKRF--MWRDSFHRHVTSCTK-SYEA--AKAEQNTTEASGPS 108
Query: 257 S 257
S
Sbjct: 109 S 109
Score = 30.1 bits (69), Expect = 0.33
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
CGKSF HM H +P + C C + K L H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP-YGC--GVCGKKFKMKHHLVGH 56
Score = 29.7 bits (68), Expect = 0.50
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 309 FSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCL 368
F+ KS RH S HL +R + C CGK F HL HM H KP + C C
Sbjct: 19 FTHKSQRDRH-MSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKP-YEC--NICA 72
Query: 369 MSYVAKSSLYAHLKHVHS 386
++ + S H +HV S
Sbjct: 73 KRFMWRDSF--H-RHVTS 87
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSK-HLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
E ++C C +++ S RH + N++++PCP C K F R +++ H+
Sbjct: 5 KEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHV 60
Query: 351 LQHNE 355
++
Sbjct: 61 KIIHK 65
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHV-TNPEDLVCKGCGKQFKVPCRLREHYKAVHE 293
Y C C + + +++ H N + C C K+F + H K +H+
Sbjct: 10 TYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 36.8 bits (86), Expect = 6e-04
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHM-TSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 197
++CK+ C + RH TSH + K YPC C K FT N+ H
Sbjct: 9 HTYRCKV-------CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAH 59
Query: 198 MVRH 201
+
Sbjct: 60 VKII 63
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 33/86 (38%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 236
Y C C++ +T +SN H V NV
Sbjct: 11 YRCKV--CSRVYTHISNFCRHYVTS----------------------------HKRNVK- 39
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C + C K F ++ +H ++
Sbjct: 40 VYPCPF--CFKEFTRKDNMTAHVKII 63
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 46.6 bits (112), Expect = 5e-07
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
+ C+ C K F+ LK HM H G KP C+ C + HL+ HS
Sbjct: 7 GPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYK--CKT--CDYAAADSSSLNKHLRIHS 60
Query: 233 NVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
+ P+ C + C + + L H R H
Sbjct: 61 D-ERPFKC--QICPYASRNSSQLTVHLRSH 87
Score = 45.5 bits (109), Expect = 1e-06
Identities = 26/122 (21%), Positives = 36/122 (29%), Gaps = 37/122 (30%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
P+ C + CGK F LK+H R H T + CK C L +H +H +
Sbjct: 8 PHKC--EVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKH-LRIHSDER 63
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
FKC C + S L H+ H +
Sbjct: 64 PFKCQI---------------------------------CPYASRNSSQLTVHLRSHTGD 90
Query: 357 KP 358
Sbjct: 91 SG 92
Score = 42.4 bits (101), Expect = 1e-05
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN 265
CE CG+ F LK H PY C K C + +SL H R+H ++
Sbjct: 11 CEV--CGKCFS----RKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIH-SD 61
Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 300
C+ C + +L H + H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 30.1 bits (69), Expect = 0.29
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHML 351
S+ KC C FS K LK H + H ++ + C TC + S L +H+
Sbjct: 3 SGSSGPHKCEV--CGKCFSRKDKLKTHMRC-HTGVKPYKCK--TCDYAAADSSSLNKHLR 57
Query: 352 QHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
H++ +P F C Q C + S L H
Sbjct: 58 IHSDERP-FKC--QICPYASRNSSQLTVH 83
Score = 28.2 bits (64), Expect = 1.5
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
KP+KCK C + L +H+ H +++ + C C S L +H+
Sbjct: 35 KPYKCK-------TCDYAAADSSSLNKHLRIHSDERP-FKCQI--CPYASRNSSQLTVHL 84
Query: 199 VRH 201
H
Sbjct: 85 RSH 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 46.3 bits (111), Expect = 7e-07
Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 38/126 (30%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 296
++C K CG+ F +L H+R H T+ C C K F+ LR+H + +H K
Sbjct: 17 EFIC--KFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDH-RYIHSKEK 72
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
FKC CGK F +S L H H +
Sbjct: 73 PFKCQE---------------------------------CGKGFCQSRTLAVHKTLHMQT 99
Query: 357 KPKFTC 362
T
Sbjct: 100 SS-PTA 104
Score = 45.1 bits (108), Expect = 2e-06
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 192 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCG 246
S + K C+ CGR F S +L H PY C C
Sbjct: 3 SGSSGGRLPSKTKKEFI--CKF--CGRHFT----KSYNLLIHERTHTDERPYTC--DICH 52
Query: 247 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
K+F L+ H+ +H + + C+ CGK F L H K +H T +
Sbjct: 53 KAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105
Score = 35.1 bits (82), Expect = 0.007
Identities = 32/129 (24%), Positives = 43/129 (33%), Gaps = 45/129 (34%)
Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 193
KK F CK C F + LL H +H DE + Y CD C+K F +
Sbjct: 12 SKTKKEFICK-------FCGRHFTKSYNLLIHERTHTDE--RPYTCDI--CHKAFRRQDH 60
Query: 194 LKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 253
L+ H H K P+ C + CGK F
Sbjct: 61 LRDHRYIH------------SKEK-------------------PFKC--QECGKGFCQSR 87
Query: 254 SLKSHQRVH 262
+L H+ +H
Sbjct: 88 TLAVHKTLH 96
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 44.4 bits (106), Expect = 2e-06
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ESTKNFKCTHDGCKLLFSS 311
S S R H + + C C +F ++ H E+ F C H C + +
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPH--CDTVIAR 57
Query: 312 KSALKRHNKSKH 323
KS L H + +H
Sbjct: 58 KSDLGVHLRKQH 69
Score = 43.7 bits (104), Expect = 3e-06
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 34/99 (34%)
Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
+H +K Y C C+ RFT +KMH+++
Sbjct: 2 SSGSSGRTHSGEKP-YECYI--CHARFTQSGTMKMHILQK-------------------- 38
Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR 260
H+ A + C + C + L H R
Sbjct: 39 ---------HTENVAKFHCPH--CDTVIARKSDLGVHLR 66
Score = 42.9 bits (102), Expect = 6e-06
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 336 CGKSFLRSEHLQEHMLQHN-ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
C F +S ++ H+LQ + EN KF CP+ C KS L HL+ HS
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHS 70
Score = 42.5 bits (101), Expect = 9e-06
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVH 292
PY C C F ++K H T E++ C C L H + H
Sbjct: 15 PYECYI--CHARFTQSGTMKMHILQKHT--ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 127 TFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCN 185
+ H +KP++C + C F + H+ E+ + C C+
Sbjct: 2 SSGSSGRTHSGEKPYECYI-------CHARFTQSGTMKMHILQKHTENVAKFHCPH--CD 52
Query: 186 KRFTTLSNLKMHM 198
S+L +H+
Sbjct: 53 TVIARKSDLGVHL 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 59/366 (16%), Positives = 99/366 (27%), Gaps = 93/366 (25%)
Query: 57 VRHADVLIMPANHV--LTVSWVYEEDAITEALQSL--GINKEYFISSTGGKNSKKQQLWS 112
V + L + + + E LQ L I+ + S N
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------- 222
Query: 113 CPIVNCNFTSVNLNTF---KIH---LL-----------KHFDKKPFKCK--LTT--ANNT 151
+ + L K + LL F+ CK LTT T
Sbjct: 223 -IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVT 278
Query: 152 PCMWGFFSKHKLLRHMT---SHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLC 208
+ + H L H + + DE K K + R L V P L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLP----REVLTTNPRRLS 331
Query: 209 CEELGCGRKFQTM-------KQYS----THLKEHS-NVSAPYMCDYKGCGKSFYLMASLK 256
+ K + T + E S NV P +Y+ F ++
Sbjct: 332 ----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKM---FDRLSVFP 382
Query: 257 SHQRVHVT--------------NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
H+ + +V K K V + +E ++ K
Sbjct: 383 PS--AHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 303 DGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM--LQHNENKPKF 360
+ L +S + +N K + P + H+ H+ ++H E F
Sbjct: 440 ENEYAL--HRSIVDHYNIPKTFDSDDLI-PPYLDQYFY---SHIGHHLKNIEHPERMTLF 493
Query: 361 TCPYQD 366
+ D
Sbjct: 494 RMVFLD 499
Score = 47.9 bits (113), Expect = 5e-06
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 46/230 (20%)
Query: 50 ENMFVFCVRHADVLIMPANHVLTVSW----VYEEDAITEALQ--SLGINKEYFISSTGGK 103
+ + VF I +L++ W + + L SL + K+
Sbjct: 376 DRLSVF---PPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQP-------- 421
Query: 104 NSKKQQLWSCPIVNCNFTSVNLNTFKIH--LLKHFDKKPFKCKLTTANNTPCMWGFFSKH 161
K+ S P + N + +H ++ H++ K + P + +F H
Sbjct: 422 ---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSH 476
Query: 162 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 221
+ H+ + + ++ + RF L K +RH T Q +
Sbjct: 477 -IGHHLKNIEHPERMTLFRMVFLDFRF--LEQ-K---IRHDS--TAWNASGSILNTLQQL 527
Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE-DLV 270
K Y ++ ++ + F L + + + DL+
Sbjct: 528 KFYKPYICDNDPKYERLVNAI----LDF-----LPKIEENLICSKYTDLL 568
Score = 36.4 bits (83), Expect = 0.017
Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 52/178 (29%)
Query: 183 NCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 242
N N+ F K ++ R + + ++Q L+ NV +
Sbjct: 121 NDNQVFA-----KYNVSRL--------------QPYLKLRQALLELRPAKNVLIDGV--- 158
Query: 243 KGCGKSFYLMASLKSHQRV-------------HVTNPEDLVCKGCGKQFKVPC-RLREHY 288
G GK++ + S++ + +PE ++ + + ++ ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-----EMLQKLLYQIDPNW 213
Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKS----------KHLNMRMFPCP-LVT 335
+ + + N K + K + K N C L+T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Score = 33.7 bits (76), Expect = 0.11
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 283 RLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHN---KSKHLNMR-----MFPCPLV 334
++ + T+ + D L++ ++N +L +R + P V
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 335 T------CGKSFLRSEHLQEHMLQHNENKPKF 360
GK+++ + + +Q + F
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 42.5 bits (101), Expect = 1e-05
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 163 LLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 222
+H +K Y C C+K F L MH
Sbjct: 3 SGSSGRTHTGEKP-YACSH--CDKTFRQKQLLDMHF------------------------ 35
Query: 223 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 278
+ + V A ++C CGK+F ++ H P+ + + G
Sbjct: 36 --KRYHDPNF-VPAAFVC--SKCGKTFTRRNTMARHADNC-AGPDGVEGENSGPSS 85
Score = 40.6 bits (96), Expect = 5e-05
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVHE 293
PY C C K+F L H + + VC CGK F + H
Sbjct: 15 PYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCA 71
Query: 294 STKNFKCTH 302
+ +
Sbjct: 72 GPDGVEGEN 80
Score = 36.0 bits (84), Expect = 0.002
Identities = 20/113 (17%), Positives = 27/113 (23%), Gaps = 40/113 (35%)
Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH----ESTKNFKCTHDGCKLLF 309
S S R H T + C C K F+ L H+K + F C+
Sbjct: 2 SSGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSK------- 52
Query: 310 SSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
CGK+F R + H
Sbjct: 53 --------------------------CGKTFTRRNTMARHADNCAGPDG-VEG 78
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 41.7 bits (99), Expect = 2e-05
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 225 STHLKEHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 281
H HS+++ PY CD C SF +L SH+ VH T + C CG QF P
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRP 58
Query: 282 CRLREH 287
L+ H
Sbjct: 59 ANLKTH 64
Score = 36.3 bits (85), Expect = 0.001
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 192 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCG 246
+ H KP C+ C F+ Y +L H V PY C CG
Sbjct: 3 HHHHHHSHMTHSDKPYK--CDR--CQASFR----YKGNLASHKTVHTGEKPYRC--NICG 52
Query: 247 KSFYLMASLKSHQRVH 262
F A+LK+H R+H
Sbjct: 53 AQFNRPANLKTHTRIH 68
Score = 34.7 bits (81), Expect = 0.005
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 35/105 (33%)
Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKS 313
H + + + C C F+ L H K VH K ++C
Sbjct: 4 HHHHHSHMT-HSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNI----------- 50
Query: 314 ALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKP 358
CG F R +L+ H H+ KP
Sbjct: 51 ----------------------CGAQFNRPANLKTHTRIHSGEKP 73
Score = 27.4 bits (62), Expect = 1.7
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
KP+KC C F K L H T H +K Y C+ C +F +NLK H
Sbjct: 16 KPYKCD-------RCQASFRYKGNLASHKTVHTGEKP-YRCNI--CGAQFNRPANLKTHT 65
Query: 199 VRH 201
H
Sbjct: 66 RIH 68
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 35/88 (39%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
C + C+ ++ + L++H H C +
Sbjct: 8 HPEKCSE--CSYSCSSKAALRIHERIH------------CTDR----------------- 36
Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C+Y C ++L H +
Sbjct: 37 --PFKCNY--CSFDTKQPSNLSKHMKKF 60
Score = 40.6 bits (96), Expect = 3e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 289
P C C S A+L+ H+R+H C C K P L +H K
Sbjct: 9 PEKCSE--CSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 38.2 bits (90), Expect = 2e-04
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 134 KHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 193
P KC C + SK L H H D+ + C+ C+ SN
Sbjct: 3 SGSSGHPEKCS-------ECSYSCSSKAALRIHERIHCTDRP-FKCNY--CSFDTKQPSN 52
Query: 194 LKMHMVRH 201
L HM +
Sbjct: 53 LSKHMKKF 60
Score = 32.5 bits (75), Expect = 0.029
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
C S L+ H H ++P F C Y C S+L H+K
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRP-FKCNY--CSFDTKQPSNLSKHMK 58
Score = 30.9 bits (71), Expect = 0.077
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 290 AVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEH 349
+ S KC+ C SSK+AL+ H + H R F C C + +L +H
Sbjct: 2 SSGSSGHPEKCSE--CSYSCSSKAALRIH-ERIHCTDRPFKCNY--CSFDTKQPSNLSKH 56
Query: 350 MLQH 353
M +
Sbjct: 57 MKKF 60
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.8 bits (97), Expect = 3e-05
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 293 ESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQ 352
E+ + ++C C SS H + CP C F E QEH +
Sbjct: 12 ENKEVYQCRL--CNAKLSSLLEQGSHERLCR---NAAVCPY--CSLRFFSPELKQEHESK 64
Query: 353 HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNKIT 391
K TC +C+ ++ + S++ H VH+ N +
Sbjct: 65 CEYK--KLTCL--ECMRTFKSSFSIWRHQVEVHNQNNMA 99
Score = 41.8 bits (97), Expect = 4e-05
Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 9/109 (8%)
Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY 288
Y C C + SH+R+ VC C +F P +EH
Sbjct: 8 ASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH- 61
Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCG 337
K C C F S ++ RH H M P + G
Sbjct: 62 -ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 214 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG 273
C K ++ + +H + N +C Y C F+ + H+ L C
Sbjct: 22 CNAKLSSLLEQGSHERLCRNA---AVCPY--CSLRFFSPELKQEHESKCEYKK--LTCLE 74
Query: 274 CGKQFKVPCRLREHYKAVH 292
C + FK + H VH
Sbjct: 75 CMRTFKSSFSIWRHQVEVH 93
Score = 31.0 bits (69), Expect = 0.18
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 137 DKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 196
+K+ ++C+L C S + H C C+ RF + +
Sbjct: 13 NKEVYQCRL-------CNAKLSSLLEQGSHERLCRNAAVC-----PYCSLRFFSPELKQE 60
Query: 197 HMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSN 233
H + C E C R F++ H E N
Sbjct: 61 HESKCEYKKLTCLE---CMRTFKSSFSIWRHQVEVHN 94
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 39.7 bits (94), Expect = 8e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
+ C C K F S L H++ H +P C+ CG++F + +K+H+ +
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYP--CQY--CGKRFH----QKSDMKKHTFI 51
Query: 235 ---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C + CGK+F ++L +H R H
Sbjct: 52 HTGEKPHKC--QVCGKAFSQSSNLITHSRKH 80
Score = 39.7 bits (94), Expect = 9e-05
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED 268
C+ CG+ F+ STHL HS+ + PY C Y CGK F+ + +K H +H T +
Sbjct: 4 CKI--CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKP 57
Query: 269 LVCKGCGKQFKVPCRLREH 287
C+ CGK F L H
Sbjct: 58 HKCQVCGKAFSQSSNLITH 76
Score = 38.9 bits (92), Expect = 2e-04
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 37/116 (31%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN 297
+ C K CGKSF ++L +H +H ++ C+ CGK+F +++H +H K
Sbjct: 2 FDC--KICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKP 57
Query: 298 FKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
KC CGK+F +S +L H +H
Sbjct: 58 HKCQV---------------------------------CGKAFSQSSNLITHSRKH 80
Score = 29.3 bits (67), Expect = 0.47
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
CGKSF RS L H+L H++ +P + C Q C + KS + H
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRP-YPC--QYCGKRFHQKSDMKKH 48
Score = 28.5 bits (65), Expect = 0.84
Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 37/110 (33%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFP 330
CK CGK FK L H +H T+ + C +
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQY---------------------------- 34
Query: 331 CPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
CGK F + +++H H KP C Q C ++ S+L H
Sbjct: 35 -----CGKRFHQKSDMKKHTFIHTGEKP-HKC--QVCGKAFSQSSNLITH 76
Score = 25.5 bits (57), Expect = 9.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 130 IHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFT 189
HLL H D +P+ C+ C F K + +H H +K + C C K F+
Sbjct: 19 THLLIHSDTRPYPCQ-------YCGKRFHQKSDMKKHTFIHTGEKP-HKCQV--CGKAFS 68
Query: 190 TLSNLKMHMVRH 201
SNL H +H
Sbjct: 69 QSSNLITHSRKH 80
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.5 bits (94), Expect = 9e-05
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 254 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAV-HESTKNFKCTHDGCKLLFSSK 312
S K + + T CK C + L H H N + ++ K +
Sbjct: 6 SGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 313 SALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
+ K ++ C CG SF + L HM++
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTK 104
Score = 39.7 bits (92), Expect = 2e-04
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 166 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM--VRHGKPLTLCCEELGCGRKFQTMKQ 223
+ + K + C C+ + TL L +HM H + + R + K+
Sbjct: 10 YGSIFTGASK-FRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 224 YSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 258
++ + C Y CG SF + L H
Sbjct: 67 SLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVH 99
Score = 33.2 bits (75), Expect = 0.037
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 134 KHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 193
H+ + NN P W K LL D +K C C F +L +
Sbjct: 43 GHYRDDNHET----DNNNPKRWSKPRKRSLLEMEGKEDA-QKVLKCMY--CGHSFESLQD 95
Query: 194 LKMHMVRH 201
L +HM++
Sbjct: 96 LSVHMIKT 103
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.0 bits (92), Expect = 1e-04
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 287
PY C CGK+F + L HQRVH T + C CGK F L H
Sbjct: 14 PYGC--VECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINH 61
Score = 34.8 bits (81), Expect = 0.005
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
C E CG+ F S+ L +H V PY C CGK+F + L +HQR+H
Sbjct: 17 CVE--CGKAFS----RSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIH 65
Score = 33.2 bits (77), Expect = 0.017
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 255 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSA 314
+H + + C CGK F L +H + VH K +KC C FS S
Sbjct: 2 SSGSSGIH-SGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLE--CGKAFSQNSG 57
Query: 315 LKRH 318
L H
Sbjct: 58 LINH 61
Score = 26.7 bits (60), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
CGK+F RS L +H H KP + C +C ++ S L H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKP-YKC--LECGKAFSQNSGLINH 61
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 264 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTHDGCKLL---FSSKSALKR 317
K C + F L H H N C + C F +K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 318 HNKSKHLNMRMFPC 331
H + H + P
Sbjct: 81 HIRV-HTGEKSGPS 93
Score = 36.1 bits (83), Expect = 0.003
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 173 DKKCYPCDQKNCNKRFTTLSNLKMHM----VRHGKPLTLCCEELGCGRKFQTMKQYS--- 225
D+ +K+C++ F+T+ L H+ V + C C R+ ++ K
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 226 THLKEHSNVSAPYMC 240
H++ H+
Sbjct: 80 NHIRVHTG-EKSGPS 93
Score = 36.1 bits (83), Expect = 0.003
Identities = 16/74 (21%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 295 TKNFKCTHDGCKLLFSSKSALKRHNKSKHL---NMRMFPCPLVTC---GKSFLRSEHLQE 348
C FS+ L H +H+ C C GKSF L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 349 HMLQHNENKPKFTC 362
H+ H K
Sbjct: 81 HIRVHTGEKS-GPS 93
Score = 34.2 bits (78), Expect = 0.010
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 237 PYMCDYKGCGKSFYLMASLKSH-QRVHVTNPEDLV-------CKGCGKQFKVPCRLREHY 288
K C ++F M L +H HV PE C GK FK +L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 289 KAVHESTKNFKCT 301
+ VH K+ +
Sbjct: 83 R-VHTGEKSGPSS 94
Score = 33.8 bits (77), Expect = 0.017
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQ---HNENKPKFTCPYQDCL---MSYVAKSSLYAHLK 382
P +C ++F L H+ + C +++C S+ AK L H+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI- 82
Query: 383 HVHS 386
VH+
Sbjct: 83 RVHT 86
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 37.9 bits (89), Expect = 3e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
++C+ C ++F LK H R H TN + C C + F L H + +H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.8 bits (81), Expect = 0.003
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 335 TCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
C ++F R EHL+ H H KP + C C ++ + L H + +HS
Sbjct: 7 VCTRAFARQEHLKRHYRSHTNEKP-YPCG--LCNRAFTRRDLLIRHAQKIHS 55
Score = 28.6 bits (65), Expect = 0.44
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 139 KPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 198
+ F C+ C F + L RH SH +K YPC CN+ FT L H
Sbjct: 1 RSFVCE-------VCTRAFARQEHLKRHYRSHTNEKP-YPCGL--CNRAFTRRDLLIRHA 50
Query: 199 VR 200
+
Sbjct: 51 QK 52
Score = 27.1 bits (61), Expect = 1.5
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
+ + C+ C + F +LK H H KP C C R F L H+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYP--CGL--CNRAF----TRRDLLIRHA 50
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.8 bits (89), Expect = 4e-04
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 287
Y CD CGKSF + L H+R H T + C CGK F L H
Sbjct: 18 RYKCDE--CGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGH 65
Score = 32.8 bits (76), Expect = 0.023
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 262
C+E CG+ F +S+ L +H PY C CGK+F + L H RVH
Sbjct: 21 CDE--CGKSFS----HSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVH 69
Score = 27.4 bits (62), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 380
CGKSF S L +H H KP + C +C +++ +S L H
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKP-YKC--DECGKAFIQRSHLIGH 65
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.5 bits (85), Expect = 6e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 226 THLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
+ + P+ C + GCG F L H+R H
Sbjct: 2 SSGSSGTG-EKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 362
+ F C CG F RS+ L H H+ KP
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGP 45
Score = 31.9 bits (73), Expect = 0.022
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC 331
K F CT GC FS L RH + H ++
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRH-RRSHSGVKPSGP 45
Score = 31.1 bits (71), Expect = 0.048
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 166 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+S +K + C C RF+ L H H
Sbjct: 3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSH 37
Score = 29.2 bits (66), Expect = 0.22
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 131 HLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCD 180
+KPF C C W F +L RH SH K
Sbjct: 3 SGSSGTGEKPFAC-----TWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCD 241
C GCG +F + S H + HS V P
Sbjct: 15 CTWPGCGWRFSRSDELSRHRRSHSGVK-PSGPS 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 71/474 (14%), Positives = 125/474 (26%), Gaps = 201/474 (42%)
Query: 4 YHHASLHGNQELHTCPARLSPSL----------------ACLVSLV----GSASALIPRT 43
+ + L GN ++H A+L A +++ S SAL
Sbjct: 91 FENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 44 VCGDI------------------LENMF--------VFCVRHADVLIMPANHVLTVSWVY 77
G+ L +++ A+ L L V+
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 78 EE--DAITEALQSLGI--NKEYFISSTGGKNSKKQQLWSCPIVN----CNFTSVNLNTFK 129
+ + I E L++ +K+Y +S SCP++ ++ + T K
Sbjct: 210 TQGLN-ILEWLENPSNTPDKDYLLSIP----------ISCPLIGVIQLAHY----VVTAK 254
Query: 130 IHLLKHFDKKPFKCKLTT------------ANNTPCMWGFFSK--HKLLRHMT-----SH 170
+ + + + T ++ W F K + + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---WESFFVSVRKAITVLFFIGVRCY 311
Query: 171 DEDKKCYP-------------------------------------CDQKNC----NKR-F 188
+ YP ++ N K+
Sbjct: 312 E----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 189 TTLSNLKMHMVRHGKPLTLC--CEELGCGRKF-------QTMKQYSTHLKEHSN----VS 235
+L N ++V G P +L L RK Q+ +S + SN V+
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 236 APYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGC---GKQFKVP-------CRLR 285
+P+ + +DLV K ++P LR
Sbjct: 425 SPFHSHL---------LVPASDLI------NKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 286 EHY-------------KAVH-ESTKNFKCTHDGCKLLF-----SSKSALKRHNK 320
V E+T FK TH L F S L NK
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATH---ILDFGPGGASGLGVLTHRNK 520
Score = 36.2 bits (83), Expect = 0.022
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 56/157 (35%)
Query: 6 HASLHGNQE---LHTCPAR-LSPSLACLVSLV---GSASA-LIPRTVCGDILENMFVFCV 57
H SL G E L A +S + LV +V G +PR G M
Sbjct: 1762 H-SL-G--EYAAL-ASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGM----- 1809
Query: 58 RHADVLIMPANHVLTVSWVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVN 117
+ I P V+ + ++A+ ++ +G TG W IVN
Sbjct: 1810 ----IAINPG----RVAASFSQEALQYVVERVG-------KRTG---------WLVEIVN 1845
Query: 118 CNF---------TSVNLNTFKIHLLKHFDKKPFKCKL 145
N L+T ++L + K +
Sbjct: 1846 YNVENQQYVAAGDLRALDTV-TNVLNFIKLQ--KIDI 1879
Score = 34.6 bits (79), Expect = 0.072
Identities = 72/398 (18%), Positives = 111/398 (27%), Gaps = 123/398 (30%)
Query: 34 GS--ASALIPRTVCGDILENMFVFCVRHADVL------IMPANHVLTVSWVYEEDAITEA 85
GS L+P F A L I+P T + +++ T A
Sbjct: 14 GSLEHVLLVP--------TASFF----IASQLQEQFNKILPEP---TEGFAADDEPTTPA 58
Query: 86 -LQS--LGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIH-----LLKHFD 137
L LG ++SS + Q + F + L IH LL+ D
Sbjct: 59 ELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 138 KKPFKCKLTTAN--------NTPCMWGFFSKH---KLLRHMTSHDEDKKCYPC--DQKNC 184
K K N P F K L R + + + Q N
Sbjct: 114 TTLVKTKELIKNYITARIMAKRP-----FDKKSNSALFRA--VGEGNAQLVAIFGGQGNT 166
Query: 185 NKRFTTLSNL--------KMHMVRHGKPL-TLCCEELGCGRKFQTMKQYSTHLKEHSNV- 234
+ F L +L + + L L L + F L+ SN
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK----- 289
Y+ S L+ + Q H + K G P LR + K
Sbjct: 227 DKDYLL---SIPISCPLIGVI---QLAHYV----VTAKLLGFT---PGELRSYLKGATGH 273
Query: 290 ----------AVHESTKNF-KCTHDGCKLLF--------------SSKSALK---RHNKS 321
A +S ++F +LF S L+ +N+
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 322 KHLNMRMFPCP-LVTCGKSFLRSEHLQEHMLQHNENKP 358
P P L L E +Q+++ + N + P
Sbjct: 334 V-------PSPMLSISN---LTQEQVQDYVNKTNSHLP 361
Score = 31.6 bits (71), Expect = 0.55
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 30/77 (38%)
Query: 39 LIPRTVCGDILENMFVFCVRHADVLIM------PANHVLTVSWVYEEDAITEALQ----- 87
L + +I E+ + R L+ PA + + A E L+
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA--LTLMEK-----AAFEDLKSKGLI 1753
Query: 88 ---------SLGINKEY 95
SLG EY
Sbjct: 1754 PADATFAGHSLG---EY 1767
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
++C +GCGK + + L++H R H
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 31.2 bits (71), Expect = 0.039
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
KK + C + C K + S+L+ H+ H
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 30.8 bits (70), Expect = 0.047
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ C + CGK + ++ HL+ H+ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 24.6 bits (54), Expect = 8.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
K C GC ++ S L+ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAH 29
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C+ CG F + +LKSH R+H
Sbjct: 11 PYPCEI--CGTRFRHLQTLKSHLRIH 34
Score = 31.7 bits (73), Expect = 0.021
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K YPC+ C RF L LK H+ H
Sbjct: 10 KPYPCEI--CGTRFRHLQTLKSHLRIH 34
Score = 28.2 bits (64), Expect = 0.44
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKP 358
+PC CG F + L+ H+ H + P
Sbjct: 12 YPCE--ICGTRFRHLQTLKSHLRIHTGSGP 39
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.6 bits (80), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 322 KHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
++ F CP C +SF RS+HL H +H
Sbjct: 5 GSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C CGKSF SL HQR
Sbjct: 11 PYLC--GQCGKSFTQRGSLAVHQRSC 34
Score = 28.0 bits (63), Expect = 0.58
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF + L H +++ P
Sbjct: 17 CGKSFTQRGSLAVHQRSCSQSGP 39
Score = 24.9 bits (55), Expect = 7.5
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
Y C Q C K FT +L +H
Sbjct: 10 TPYLCGQ--CGKSFTQRGSLAVHQRSC 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.1 bits (79), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C + CGKSF SL H+R+H
Sbjct: 10 VYEC--QECGKSFRQKGSLTLHERIH 33
Score = 24.5 bits (54), Expect = 9.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF + L H H + P
Sbjct: 16 CGKSFRQKGSLTLHERIHTGSGP 38
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.004
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ CD CGK+F +++L+ HQRVH
Sbjct: 12 SHTCDE--CGKNFCYISALRIHQRVH 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.7 bits (78), Expect = 0.004
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
R F C CGK F RS+ LQ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.8 bits (73), Expect = 0.018
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+MC + CGK F L+ H+R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.6 bits (62), Expect = 0.54
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRH 201
+ C C KRFT L+ H H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.3 bits (78), Expect = 0.004
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 289
Y+C+ CG + LK H R H T+ C C FK L +H K
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.8 bits (74), Expect = 0.014
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
CEE CG + + H++ H++ PY C Y C SF +L H +
Sbjct: 4 CEE--CGIRXKKPSMLKKHIRTHTD-VRPYHCTY--CNFSFKTKGNLTKHMKSK 52
Score = 30.1 bits (67), Expect = 0.14
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHS 232
Y C++ C R S LK H+ H C C F+T + H+K +
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKA 53
Score = 29.3 bits (65), Expect = 0.26
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
CG + L++H+ H + +P + C C S+ K +L H+K
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRP-YHC--TYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (64), Expect = 0.34
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 118 CNFTSVNLNTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKK 175
C + K H+ H D +P+ C C + F +K L +HM S KK
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCT-------YCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 25.1 bits (54), Expect = 9.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 310 SSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
S LK+H ++ H ++R + C C SF +L +HM +K
Sbjct: 12 KKPSMLKKHIRT-HTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSK 56
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C+ CG F +A L++H +H
Sbjct: 11 PYKCET--CGARFVQVAHLRAHVLIH 34
Score = 30.2 bits (69), Expect = 0.083
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 335 TCGKSFLRSEHLQEHMLQHNENKP 358
TCG F++ HL+ H+L H + P
Sbjct: 16 TCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.6 bits (65), Expect = 0.31
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 166 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
S +K Y C+ C RF +++L+ H++ H
Sbjct: 2 SSGSSGGEKP-YKCET--CGARFVQVAHLRAHVLIH 34
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 33.3 bits (77), Expect = 0.008
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C K CGKSF + L HQRVH
Sbjct: 12 PYNC--KECGKSFRWASCLLKHQRVH 35
Score = 27.9 bits (63), Expect = 0.58
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + CK CGK F+ L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPS 44
Score = 24.8 bits (55), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF + L +H H+ KP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKP 40
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C K CG +F SL H R H
Sbjct: 12 PFQC--KECGMNFSWSCSLFKHLRSH 35
Score = 31.0 bits (71), Expect = 0.049
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + CK CG F C L +H + HE T +
Sbjct: 2 SSGSSG-TGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPSS 45
Score = 28.3 bits (64), Expect = 0.47
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CG +F S L +H+ H P
Sbjct: 18 CGMNFSWSCSLFKHLRSHERTDP 40
Score = 24.9 bits (55), Expect = 7.7
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 166 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+S +K + C + C F+ +L H+ H
Sbjct: 3 SGSSGTGEKP-FQCKE--CGMNFSWSCSLFKHLRSH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 33.0 bits (75), Expect = 0.011
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTC 362
CGK F HL H L H+ KP ++
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKP-YSS 43
Score = 27.2 bits (60), Expect = 1.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
C+ CGK F + L H+ H
Sbjct: 12 QVACEI--CGKIFRDVYHLNRHKLSH 35
Score = 27.2 bits (60), Expect = 1.4
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 168 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
S +K C+ C K F + +L H + H
Sbjct: 4 GSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSH 35
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 32.7 bits (74), Expect = 0.011
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY CD+ GC K+F L H++ H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 26.9 bits (59), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 356
R + C C K+F+R+ L H H E
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 25.0 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRHGKP 204
Y CD C+K F +L H H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 24.6 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 298 FKCTHDGCKLLFSSKSALKRHNKS 321
+ C H GC F L RH KS
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKS 27
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C C F +SL+ HQ VH
Sbjct: 12 TWKCRE--CDMCFSQASSLRLHQNVH 35
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
C F ++ L+ H H KP
Sbjct: 18 CDMCFSQASSLRLHQNVHVGEKP 40
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 32.9 bits (76), Expect = 0.013
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 237 PYMCDYKGCGKSFYLMASLKSH-QRVHVTNPEDLVCKGCGKQF 278
PY+C CGK F L H ++VH T+ C+
Sbjct: 12 PYICQS--CGKGFSRPDHLNGHIKQVH-TSERPHKCQVWVSGP 51
Score = 31.8 bits (73), Expect = 0.032
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 300
C+ CGK F P L H K VH S + KC
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 29.9 bits (68), Expect = 0.15
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 289 KAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF 340
+ K + C C FS L H K H + R C
Sbjct: 4 GSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQ--VWVSGP 51
Score = 28.3 bits (64), Expect = 0.52
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 336 CGKSFLRSEHLQEHMLQ-HNENKPKFTC 362
CGK F R +HL H+ Q H +P C
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERP-HKC 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C K CGKSF L H+R+H
Sbjct: 12 LYNC--KECGKSFSRAPCLLKHERLH 35
Score = 25.6 bits (57), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF R+ L +H H+ KP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKP 40
Score = 24.8 bits (55), Expect = 7.0
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + CK CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 32.5 bits (75), Expect = 0.014
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F SL H RVH
Sbjct: 11 PYRC--DQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F + L H+ H + P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGP 39
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 32.5 bits (75), Expect = 0.015
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F L SHQR H
Sbjct: 10 PYEC--SECGKAFNRKDQLISHQRTH 33
Score = 24.8 bits (55), Expect = 7.6
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R + L H H
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESG 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.016
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C CG+ F L + L HQR+H
Sbjct: 12 SHQCHE--CGRGFTLKSHLNQHQRIH 35
Score = 26.4 bits (59), Expect = 2.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CG+ F HL +H H KP
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.016
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C + CGK FY + SHQR H
Sbjct: 12 PFKC--EECGKGFYTNSQCYSHQRSH 35
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + C+ CGK F + H + H K +
Sbjct: 2 SSGSSG-SGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F + H H+ KP
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKP 40
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.1 bits (73), Expect = 0.018
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 236 APYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C + GC K+F +++SH + H
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 32.1 bits (73), Expect = 0.021
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
+ F C C K+F R +++ H+ H E++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 31.8 bits (72), Expect = 0.029
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 164 LRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ DK + C C K F N++ H+ H
Sbjct: 7 IDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 28.7 bits (64), Expect = 0.37
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMR 327
K F+C GC F + ++ H ++ HL R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR 47
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 32.1 bits (74), Expect = 0.018
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGKSF + + L +HQR+H
Sbjct: 12 PFEC--AECGKSFSISSQLATHQRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F + +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 5.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF S L H H KP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.021
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY CD C KSF +SL HQR+H
Sbjct: 12 PYKCDV--CHKSFRYGSSLTVHQRIH 35
Score = 25.6 bits (57), Expect = 3.7
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C C K F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.021
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 225 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
S+ + PY C K C K+F + L H+RVH
Sbjct: 5 SSGSGKK-----PYEC--KECRKTFIQIGHLNQHKRVH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
C K+F++ HL +H H +
Sbjct: 18 CRKTFIQIGHLNQHKRVHTGERS 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ CD CGKSF + L H VH
Sbjct: 12 PFKCDI--CGKSFCGRSRLNRHSMVH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF L H + H KP
Sbjct: 18 CGKSFCGRSRLNRHSMVHTAEKP 40
Score = 25.9 bits (58), Expect = 3.6
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F RL H VH + K +
Sbjct: 2 SSGSSG-TGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.4 bits (75), Expect = 0.022
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 252 MASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 294
+ LK H V + L C+ C KQFK L H A H +
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Score = 29.9 bits (66), Expect = 0.35
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 305 CKLLF-SSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPK 359
C ++ + LK+H + C C K F L H + + KP
Sbjct: 30 CNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 28.0 bits (61), Expect = 1.7
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 284 LREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLN 325
L++H + + KC H C+ F SK+ L H ++H
Sbjct: 41 LKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSA 80
Score = 26.4 bits (57), Expect = 6.6
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 329 FPCPLVTCGKSFLRS-EHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST 387
CP TC ++ L++HM + + C + C + +K+ L H HS
Sbjct: 25 AVCP--TCNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSA 80
Query: 388 NKIT 391
Sbjct: 81 KPSD 84
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.022
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGKSF + L HQR+H
Sbjct: 12 PYEC--SDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +L H + +H +
Sbjct: 2 SSGSSG-TGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPSS 45
Score = 24.8 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF++ L H H P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 32.7 bits (74), Expect = 0.022
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 336 CGKSFLRSEHLQEHML------QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 385
C +S LQ H+L C ++DC +S+ H+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 26.2 bits (57), Expect = 3.9
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 268 DLVCK--GCGKQFKVPCRLREHYKAVH------ESTKNFKCTHDGCKLLFSSKSALKRHN 319
DL CK C + L+ H H + C + C L +++ H
Sbjct: 1 DLKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHI 60
Query: 320 KSKH 323
++H
Sbjct: 61 NAQH 64
Score = 25.4 bits (55), Expect = 7.2
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 238 YMCDYKGCGKSFYLMASLKSH-QRVHV-----TNPEDLVC--KGCGKQFKVPCRLREHYK 289
C +K C +S + L+ H + HV E L C + C + H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 290 AVH 292
A H
Sbjct: 62 AQH 64
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F ++L +HQ++H
Sbjct: 12 PYRC--AECGKAFTDRSNLFTHQKIH 35
Score = 26.7 bits (60), Expect = 1.9
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H K +H K +
Sbjct: 2 SSGSSG-TGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGPSS 45
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.023
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+CDY CGK+F L A L HQR+H
Sbjct: 12 PYVCDY--CGKAFGLSAELVRHQRIH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S + + VC CGK F + L H + +H K +
Sbjct: 2 SSGSSG-SGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F S L H H KP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKP 40
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.023
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + CGK F L +H VH
Sbjct: 12 PYKC--EECGKGFICRRDLYTHHMVH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C+ CGK F L H VH K +
Sbjct: 2 SSGSSG-TGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F+ L H + H KP
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKP 40
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C CGK F ++ H+R+H
Sbjct: 12 GHRCSD--CGKFFLQASNFIQHRRIH 35
Score = 25.2 bits (56), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK FL++ + +H H KP
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKP 40
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F L A L H RVH
Sbjct: 12 PYSC--NVCGKAFVLSAHLNQHLRVH 35
Score = 28.6 bits (65), Expect = 0.37
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F+ S HL +H+ H +
Sbjct: 18 CGKAFVLSAHLNQHLRVHTQETL 40
Score = 26.3 bits (59), Expect = 2.5
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F + L +H VH +
Sbjct: 2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPSS 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C CGK+F ++L HQ++H
Sbjct: 12 PYIC--TVCGKAFTDRSNLIKHQKIH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T +C CGK F L +H K +H K +
Sbjct: 2 SSGSSG-TGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.027
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C C K+F ASL HQRVH
Sbjct: 12 PYEC--DVCRKAFSHHASLTQHQRVH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C C K F L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 31.7 bits (73), Expect = 0.027
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGKSF +L +HQR+H
Sbjct: 12 PFEC--THCGKSFRAKGNLVTHQRIH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F+ L H + +H K+ +
Sbjct: 2 SSGSSG-TGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS 44
Score = 25.2 bits (56), Expect = 6.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF +L H H K
Sbjct: 18 CGKSFRAKGNLVTHQRIHTGEKS 40
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.027
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGKSF + L+ HQ+ H
Sbjct: 12 PYKC--SDCGKSFTWKSRLRIHQKCH 35
Score = 28.3 bits (64), Expect = 0.43
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F RLR H K H ++ +
Sbjct: 2 SSGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.7 bits (73), Expect = 0.029
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C C K+F + L HQ+ H
Sbjct: 10 PFGCSC--CEKAFSSKSYLLVHQQTH 33
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
C K+F +L H H E KP
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKP 38
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C + CGKSF + L HQR+H
Sbjct: 12 PHEC--RECGKSFSFNSQLIVHQRIH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C+ CGK F +L H + +H +
Sbjct: 2 SSGSSG-TGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C+ CGK + +L HQRVH
Sbjct: 12 PYKCED--CGKGYNRRLNLDMHQRVH 35
Score = 25.9 bits (58), Expect = 2.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + C+ CGK + L H + VH K +
Sbjct: 2 SSGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPS 44
Score = 25.1 bits (56), Expect = 5.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK + R +L H H K
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKT 40
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 31.7 bits (73), Expect = 0.030
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C C K+F L + L HQR H
Sbjct: 12 PYGC--SQCAKTFSLKSQLIVHQRSH 35
Score = 25.2 bits (56), Expect = 5.4
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C C K F + +L H + H K +
Sbjct: 2 SSGSSG-TGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.031
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PYMC CGK+F + +SL +HQ +H
Sbjct: 12 PYMC--NECGKAFSVYSSLTTHQVIH 35
Score = 26.3 bits (59), Expect = 2.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + +C CGK F V L H + +H K +
Sbjct: 2 SSGSSG-TGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK + L HQRVH
Sbjct: 12 PYKC--VECGKGYKRRLDLDFHQRVH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK + R L H H K
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKL 40
Score = 25.2 bits (56), Expect = 5.3
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + C CGK +K L H + VH K +
Sbjct: 2 SSGSSG-SGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L HQR+H
Sbjct: 12 PYKC--NECGKVFRHNSYLSRHQRIH 35
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F + +L H H KP
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKP 40
Score = 25.2 bits (56), Expect = 6.8
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSS 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.3 bits (72), Expect = 0.033
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C CGK+F + L H R H
Sbjct: 12 PYVC--NECGKAFRSKSYLIIHTRTH 35
Score = 24.8 bits (55), Expect = 6.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F +L H H
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGESG 40
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.033
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + CGK+F + L+ HQR+H
Sbjct: 12 PYNC--EECGKAFIHDSQLQEHQRIH 35
Score = 26.0 bits (58), Expect = 3.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C+ CGK F +L+EH + +H K +
Sbjct: 2 SSGSSG-TGEKPYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F+ LQEH H KP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKP 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.034
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L +HQR H
Sbjct: 12 PYGC--NECGKTFSQKSILSAHQRTH 35
Score = 24.8 bits (55), Expect = 7.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F + L H H KP
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKP 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.034
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C + CGK F + L SHQRVH
Sbjct: 12 PFKC--EECGKRFTQNSQLHSHQRVH 35
Score = 25.9 bits (58), Expect = 3.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ L H H KP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKP 40
Score = 24.8 bits (55), Expect = 9.3
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + C+ CGK+F +L H + VH K +
Sbjct: 2 SSGSSG-SGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.034
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C CGK+F + ++L HQ++H
Sbjct: 12 PYIC--AECGKAFTIRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.17
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + +C CGK F + L +H K +H K +
Sbjct: 2 SSGSSG-TGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.035
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGK+F L H+R+H
Sbjct: 12 PFDC--IDCGKAFSDHIGLNQHRRIH 35
Score = 27.5 bits (62), Expect = 1.0
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F L +H H KP
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKP 40
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.035
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGKSF + L HQ++H
Sbjct: 12 PYEC--SICGKSFTKKSQLHVHQQIH 35
Score = 27.9 bits (63), Expect = 0.71
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSS 45
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.035
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C+ CGK F + L H R+H
Sbjct: 12 PFKCNE--CGKGFGRRSHLAGHLRLH 35
Score = 28.3 bits (64), Expect = 0.47
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F R HL H+ H+ K
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKS 40
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.036
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F +SL H+R H
Sbjct: 12 PYEC--IECGKAFKTKSSLICHRRSH 35
Score = 25.2 bits (56), Expect = 6.7
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F L H H KP
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKP 40
Score = 24.8 bits (55), Expect = 8.2
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T C CGK FK L H + H K +
Sbjct: 2 SSGSSG-TGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.037
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L HQ+ H
Sbjct: 12 PYKC--SDCGKAFTRKSGLHIHQQSH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F L H + H ++ +
Sbjct: 2 SSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS 44
Score = 24.8 bits (55), Expect = 9.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R L H H +
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGERH 40
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.037
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y CD CGK F + L++HQRVH
Sbjct: 12 CYKCDV--CGKEFSQSSHLQTHQRVH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F +S HLQ H H KP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 25.2 bits (56), Expect = 6.9
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + C CGK+F L+ H + VH K +
Sbjct: 2 SSGSSG-MGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.037
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + +SL +HQ +H
Sbjct: 12 PYEC--NQCGKAFSVRSSLTTHQAIH 35
Score = 28.3 bits (64), Expect = 0.49
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F V L H +A+H K +
Sbjct: 2 SSGSSG-TGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 31.3 bits (72), Expect = 0.038
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGK F ++L H ++H
Sbjct: 12 PFKC--VECGKGFSRRSALNVHHKLH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H+K +H K +
Sbjct: 2 SSGSSG-TGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F R L H H KP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKP 40
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.038
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F SL HQR+H
Sbjct: 12 PYEC--SVCGKAFSHRQSLSVHQRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.038
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F L SHQR H
Sbjct: 12 PYEC--HECGKAFSRKYQLISHQRTH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T C CGK F +L H + H K +
Sbjct: 2 SSGSSG-TGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R L H H KP
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKP 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.038
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C CGK+F ++L HQR+H
Sbjct: 12 HYEC--SECGKAFARKSTLIMHQRIH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 5.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R L H H KP
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKP 40
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.038
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L H + H
Sbjct: 12 PYGC--NECGKNFGRHSHLIEHLKRH 35
Score = 30.9 bits (71), Expect = 0.051
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTC 362
CGK+F R HL EH+ +H K
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + C CGK F L EH K H K+ +
Sbjct: 2 SSGSSG-SGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.039
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F +SL HQ H
Sbjct: 12 PYKC--NECGKAFRARSSLAIHQATH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F+ L H +A H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.040
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F A+L HQR+H
Sbjct: 12 PYRC--GECGKAFAQKANLTQHQRIH 35
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F + +L +H H KP
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.3 bits (72), Expect = 0.040
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 225 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
S+ E+ PY C CGK F L SHQ+ H
Sbjct: 5 SSGTGEN-----PYEC--CECGKVFSRKDQLVSHQKTH 35
Score = 25.5 bits (57), Expect = 4.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F R + L H H+
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQSG 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.040
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L HQRVH
Sbjct: 12 PYQC--NECGKAFSQTSKLARHQRVH 35
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +L H + VH K +
Sbjct: 2 SSGSSG-TGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F ++ L H H KP
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKP 40
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.041
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C C KSF L HQR+H
Sbjct: 12 PYKCSQ--CEKSFSGKLRLLVHQRMH 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.041
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 219 QTMKQYSTHLKEHSNVSAPYM 239
Q +K+ LK +++ SAP +
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.041
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGKSF L H H
Sbjct: 12 PYQC--SECGKSFSGSYRLTQHWITH 35
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF S L +H + H KP
Sbjct: 18 CGKSFSGSYRLTQHWITHTREKP 40
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 31.0 bits (70), Expect = 0.043
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPK 359
F CP C K F+RS+HL +H+ H +
Sbjct: 3 FACP--ECPKRFMRSDHLSKHITLHELLGEE 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.043
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L H+R H
Sbjct: 12 PYEC--NECGKAFIWKSLLIVHERTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.047
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C CGK+F ++L HQR+H
Sbjct: 12 HYEC--SECGKAFIQKSTLSMHQRIH 35
Score = 25.9 bits (58), Expect = 3.2
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS 45
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.048
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C + CGK F + L SHQRVH
Sbjct: 12 PFQC--EECGKRFTQNSHLHSHQRVH 35
Score = 26.7 bits (60), Expect = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKP 40
Score = 24.4 bits (54), Expect = 10.0
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + C+ CGK+F L H + VH K +
Sbjct: 2 SSGSSG-SGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.049
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F +S HQR+H
Sbjct: 12 PYKC--MECGKAFGDNSSCTQHQRLH 35
Score = 27.5 bits (62), Expect = 0.99
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +H + +H + +
Sbjct: 2 SSGSSG-TGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPSS 45
Score = 24.8 bits (55), Expect = 7.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F + +H H +P
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRP 40
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.051
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGKSF A L HQR+H
Sbjct: 12 PHKC--NECGKSFIQSAHLIQHQRIH 35
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF++S HL +H H KP
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKP 40
Score = 25.5 bits (57), Expect = 4.7
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T C CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.051
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P C CGK+F + L HQR H
Sbjct: 12 PCKC--TECGKAFCWKSQLIMHQRTH 35
Score = 24.8 bits (55), Expect = 8.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F L H H ++K
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKH 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.052
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L H R H
Sbjct: 12 PYGC--SECGKAFSSKSYLIIHMRTH 35
Score = 25.2 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F +L HM H+ KP
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
Score = 24.4 bits (54), Expect = 9.5
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + C CGK F L H + H K +
Sbjct: 2 SSGSSG-AGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.9 bits (71), Expect = 0.054
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C C K+F ++L HQR H
Sbjct: 12 PYEC--NECQKAFNTKSNLMVHQRTH 35
Score = 24.7 bits (55), Expect = 9.4
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
C K+F +L H H
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGESG 40
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.054
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P++C CGK F +L HQ++H
Sbjct: 12 PFIC--SECGKVFTHKTNLIIHQKIH 35
Score = 25.9 bits (58), Expect = 3.3
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T +C CGK F L H K +H + +
Sbjct: 2 SSGSSG-TGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.054
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + CGK + +L HQ+VH
Sbjct: 12 PYKC--EKCGKGYNSKFNLDMHQKVH 35
Score = 25.2 bits (56), Expect = 5.3
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C+ CGK + L H K VH + +
Sbjct: 2 SSGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.054
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C K C K+F A L HQ+ H
Sbjct: 12 PYEC--KVCSKAFTQKAHLAQHQKTH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
C K+F + HL +H H KP
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 25.2 bits (56), Expect = 5.7
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + CK C K F L +H K H K +
Sbjct: 2 SSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.055
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C C K+F ++L HQR H
Sbjct: 12 PFEC--SECQKAFNTKSNLIVHQRTH 35
Score = 25.1 bits (56), Expect = 6.1
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C C K F L H + H K +
Sbjct: 2 SSGSSG-TGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.056
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L HQR+H
Sbjct: 12 PYKC--NECGKAFSQTSKLARHQRIH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F ++ L H H KP
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKP 40
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 30.9 bits (71), Expect = 0.056
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C K CGK+F L HQRVH
Sbjct: 12 PYEC--KECGKAFSQTTHLIQHQRVH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + CK CGK F L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 2.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F ++ HL +H H KP
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.057
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F ++L +HQ +H
Sbjct: 12 PYKC--NECGKAFRAHSNLTTHQVIH 35
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F +L H + H KP
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKP 40
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.0 bits (74), Expect = 0.057
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 386
F CP C F S L++H+ K CP C + + S H+ H+
Sbjct: 75 FVCP--LCLMPFSSSVSLKQHIRYTEHTK---VCPV--CKKEFTSTDSALDHVCKKHN 125
Score = 30.3 bits (67), Expect = 0.44
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 126 NTFKIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCN 185
+++ LL F C L C+ F S L +H+ + K C C
Sbjct: 60 SSYLYRLLASKAISQFVCPL-------CLMPFSSSVSLKQHIRYTEHTKVC-----PVCK 107
Query: 186 KRFTTLSNLKMHMVRH 201
K FT+ + H+ +
Sbjct: 108 KEFTSTDSALDHVCKK 123
Score = 29.9 bits (66), Expect = 0.59
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 129 KIHLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 188
+ H L K+ + + T + P + L R + S + + C C F
Sbjct: 31 RYHQLTPEQKRLIRAIVKTLIHNPQL--LDESSYLYRLLASKAISQ--FVC--PLCLMPF 84
Query: 189 TTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 234
++ +LK H+ C C ++F + H+ + N+
Sbjct: 85 SSSVSLKQHIRYTEHTKV--CPV--CKKEFTSTDSALDHVCKKHNI 126
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.057
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C CGKSF + L H+R+H
Sbjct: 12 PYIC--NECGKSFIQKSHLNRHRRIH 35
Score = 27.9 bits (63), Expect = 0.71
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKSF++ HL H H KP
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKP 40
Score = 24.8 bits (55), Expect = 9.0
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + +C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.058
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C CGKS+ L HQRVH
Sbjct: 12 PFKC--GECGKSYNQRVHLTQHQRVH 35
Score = 26.7 bits (60), Expect = 1.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGKS+ + HL +H H KP
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKP 40
Score = 25.9 bits (58), Expect = 3.1
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK + L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSS 45
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.8 bits (70), Expect = 0.062
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C C ++F L HQ++H
Sbjct: 10 PYSC--AECKETFSDNNRLVQHQKMH 33
Score = 24.6 bits (54), Expect = 8.9
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 336 CGKSFLRSEHLQEHMLQH 353
C ++F + L +H H
Sbjct: 16 CKETFSDNNRLVQHQKMH 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.063
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C CGK+F ++L HQ++H
Sbjct: 12 HFEC--TECGKAFTRKSTLSMHQKIH 35
Score = 27.5 bits (62), Expect = 0.92
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H K +H K +
Sbjct: 2 SSGSSG-TGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R L H H KP
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKP 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.063
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C K CGK+F L SH R+H
Sbjct: 12 PFKC--KECGKAFRQNIHLASHLRIH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F ++ HL H+ H KP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKP 40
Score = 25.2 bits (56), Expect = 6.5
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S + + CK CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-SGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.065
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + CGK+F + + L H VH
Sbjct: 12 PYKC--QVCGKAFRVSSHLVQHHSVH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F S HL +H H+ +P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERP 40
Score = 25.9 bits (58), Expect = 3.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C+ CGK F+V L +H +VH + +
Sbjct: 2 SSGSSG-TGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.068
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C C K+F +SL HQR+H
Sbjct: 12 LFKC--NECKKTFTQSSSLTVHQRIH 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 30.2 bits (68), Expect = 0.069
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
F CP C K F+RS+HL H+L H K
Sbjct: 3 FACP--ECPKRFMRSDHLTLHILLHENKK 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.0 bits (68), Expect = 0.085
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
R F C C ++F R EHL+ H H
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSH 25
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.092
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L +HQR+H
Sbjct: 12 PYKC--NECGKVFTQNSHLANHQRIH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKP 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.9 bits (68), Expect = 0.11
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C CGK+F + L HQ++H
Sbjct: 12 SYNC--NECGKAFTRIFHLTRHQKIH 35
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 336 CGKSFLRSEHLQEHMLQHN-ENKPK 359
CGK+F R HL H H ++ P
Sbjct: 18 CGKAFTRIFHLTRHQKIHTRKSGPS 42
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L +H R+H
Sbjct: 12 PYKC--NECGKVFTQNSHLTNHWRIH 35
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKP 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (69), Expect = 0.11
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 281 PCRLREHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSF 340
+ K +H ++ KC+ C ++F +S L R C C K
Sbjct: 3 SGSSGKRQK-IHLGDRSQKCSK--CGIIFIRRSTLSRRKTPM--------CE--KCRKDS 49
Query: 341 LRSEHLQEHMLQHNENKP 358
+ L + + K
Sbjct: 50 CQEAALNKDEGNESGKKT 67
Score = 28.1 bits (62), Expect = 1.1
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 12/71 (16%)
Query: 192 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 251
+ H + C + CG F + ST + MC + C K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSK--CGIIF---IRRSTLSRRK-----TPMC--EKCRKDSCQ 51
Query: 252 MASLKSHQRVH 262
A+L +
Sbjct: 52 EAALNKDEGNE 62
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 301
S T + C CGK F L H++ H K +
Sbjct: 2 SSGSSG-TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.5 bits (62), Expect = 0.76
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQR 260
PY C CGK+F SL H R
Sbjct: 12 PYEC--IECGKAFIQNTSLIRHWR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y C CGK F + L HQ++H
Sbjct: 12 RYKC--NECGKVFSRNSQLSQHQKIH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F R+ L +H H KP
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKP 40
Score = 26.3 bits (59), Expect = 2.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F +L +H K +H K +
Sbjct: 2 SSGSSG-TGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F+ L H+R+H
Sbjct: 12 PYKC--SECGKAFHRHTHLNEHRRIH 35
Score = 28.2 bits (64), Expect = 0.45
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK+F R HL EH H +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRP 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLVRHRGIH 35
Score = 26.3 bits (59), Expect = 2.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKP 40
Score = 25.5 bits (57), Expect = 3.9
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L H+RVH
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRRVH 35
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKP 40
Score = 25.6 bits (57), Expect = 4.9
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H + VH K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLARH-RRVHTGGKPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRGIH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
Score = 25.2 bits (56), Expect = 6.1
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H +H K +
Sbjct: 2 SSGSSG-TGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L HQ +H
Sbjct: 12 PYKC--HECGKVFRRNSHLARHQLIH 35
Score = 27.8 bits (63), Expect = 0.71
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F R+ HL H L H KP
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKP 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.17
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRGIH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKP 358
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
Score = 24.8 bits (55), Expect = 7.2
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 257 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTH 302
S T + C CGK F L H +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS 45
>3kby_A Putative uncharacterized protein; all helical, unknown funct; 1.80A
{Staphylococcus aureus}
Length = 145
Score = 30.9 bits (69), Expect = 0.34
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 67 ANHVLTVSWVYEEDAITEALQSLGINKEYFISS 99
L SWVY+E+ ITE ++SL I +Y +++
Sbjct: 71 FESELPFSWVYDENGITETMKSLSIPLQYLVAA 103
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.58
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 222 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 281
+Q+ + + +VS P + LK H C CGKQ +
Sbjct: 23 EQWYLEIVDKGSVSCP-----TCQAVGRKTIEGLKKHMENCKQEM--FTCHHCGKQLRSL 75
Query: 282 CRLREHYKAVHESTKNFK 299
++ H A H S +
Sbjct: 76 AGMKYHVMANHNSLPSGP 93
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 0.65
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 259 QRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 292
+ + NP VC C +F L EH ++ H
Sbjct: 107 KVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.7 bits (61), Expect = 0.67
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 172 EDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTL 207
D K + C C +RFT +L +H +H L
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF 37
Score = 26.2 bits (57), Expect = 2.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQHN 354
+ F C CG+ F +HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 29.2 bits (65), Expect = 0.68
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 293 ESTKNFKC-----------THDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFL 341
+ F C + C + + A+ R +S+ + CP + C + +
Sbjct: 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYE-EDAIVRMIESRQKRKKKAYCPQIGCSHTDI 61
Query: 342 RSEHL 346
R L
Sbjct: 62 RKSDL 66
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.4 bits (65), Expect = 0.69
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 285 REHYKAVHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL-VTCGKSFLRS 343
H + + ++C + C + H S+H N+ + + V C R
Sbjct: 6 HHHNQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 344 EHLQEHMLQHNENKPKFTC 362
+ L EH L+++ + F
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
Score = 28.6 bits (63), Expect = 1.2
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 227 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE---DLVCKGCGKQFKVPCR 283
H +++ V Y C Y C + H N VC C K
Sbjct: 8 HNQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 284 LREHYKAVHESTKNFKCT 301
L EH H +NFK T
Sbjct: 66 LSEHNLKYHPGEENFKLT 83
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.0 bits (69), Expect = 0.93
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 235 SAPYMCDYKGCGKSFYLMASLKSHQRVHVT 264
Y C C + L +H H
Sbjct: 178 GHGYQCHV--CSAVLFSPLDLDAHVASHGL 205
Score = 30.2 bits (67), Expect = 1.6
Identities = 5/80 (6%), Positives = 13/80 (16%), Gaps = 5/80 (6%)
Query: 166 HMTSHDEDKKCYPCD---QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 222
++ P + + + C C +
Sbjct: 137 GNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPL 194
Query: 223 QYSTHLKEHSNVSAPYMCDY 242
H+ H +
Sbjct: 195 DLDAHVASHGLHGNMTLTSS 214
Score = 29.8 bits (66), Expect = 1.9
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 320 KSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ + C + C L H+ H
Sbjct: 172 PPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 27.0 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHM 350
F CP C K F+RS+ L +H+
Sbjct: 3 FACP--ACPKRFMRSDALSKHI 22
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 1.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C C + F L H+R H
Sbjct: 12 PFKCSK--CDRVFTQRNYLVQHERTH 35
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 270 VCKGCGKQFKVPCRLREHYKAVHESTK 296
VC C K+F RLR H + VH + +
Sbjct: 9 VCALCLKKFVSSIRLRSHIREVHGAAQ 35
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase
fold, structura genomics, joint center for structural
genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP:
d.38.1.1
Length = 152
Score = 28.2 bits (63), Expect = 3.0
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 75 WVYEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCN 119
+ + ++ E+L+S G+N G + S+ + PI++C
Sbjct: 31 FRWCHESWEESLESYGLN--PADIFPGSRKSEVTPEVALPIIHCQ 73
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.5 bits (55), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 330 PCPLVTCGKSFLRSEHLQEHMLQHNENK 357
PC V CGK+F ++ L H+ QH K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 27.9 bits (63), Expect = 4.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 267 EDLVCKGCGKQFKVPCRLREHYKAVHE 293
E+L G K+ KV + +K +E
Sbjct: 15 EEL-YLGKRKKIKVTRKRFIEHKVRNE 40
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.2 bits (59), Expect = 4.6
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 253 ASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK-AVHESTKNFKCTHDGCKLLFSS 311
++ S R + D CK C + HY+ H + + + +
Sbjct: 17 DAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPA 76
Query: 312 KSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHM 350
K + R CP+ C +F + H
Sbjct: 77 KKFKAAPAEISDGEDRSKCCPV--CNMTFSSPVVAESHY 113
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 25.0 bits (54), Expect = 5.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVH 262
Y+C ++ CG+SF L H+++H
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIH 27
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 26.1 bits (56), Expect = 5.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 292 HESTKNFKCTHDGCKLLFSSKSALKRHNKSKH 323
+ + ++C H GC F+ + L H ++ H
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH 53
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 27.2 bits (61), Expect = 6.9
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 267 EDLVCKGCGKQFKVPCR 283
EDL G K FK+ +
Sbjct: 12 EDL-FVGKKKSFKIGRK 27
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 26.0 bits (57), Expect = 7.2
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHEST 295
+ +VC CG FK L+ H H T
Sbjct: 19 DDHIVCLECGGSFKS---LKRHLTTHHSMT 45
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 8.9
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 14/49 (28%)
Query: 229 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE--DLVCKGCG 275
+ N++ C C + V D+VC CG
Sbjct: 13 RRGPNLNIVLTC--PECK----------VYPPKIVERFSEGDVVCALCG 49
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 25.6 bits (55), Expect = 9.8
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 154 MWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+W +F + C C + T+ NL H+ ++
Sbjct: 10 VWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTS--NLSYHLEKN 55
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.4 bits (52), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK F L +++H RVH
Sbjct: 3 PYSCS--VCGKRFSLKHQMETHYRVH 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.431
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,640,271
Number of extensions: 312937
Number of successful extensions: 2132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 592
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.7 bits)