RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11069
(391 letters)
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 39.6 bits (93), Expect = 1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+MC + CGK F L+ H+R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.5 bits (72), Expect = 0.007
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ + C C KRFT L+ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.8 bits (70), Expect = 0.015
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQH 353
F C CGK F RS+ LQ H H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 26.5 bits (59), Expect = 0.50
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
+ F CT C F+ L+RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 38.5 bits (90), Expect = 3e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C ++GC KS+ + +LK+H R H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 33.1 bits (76), Expect = 0.003
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K + C + C K ++ L NLK H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 31.2 bits (71), Expect = 0.011
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ C C KS+ R E+L+ H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 26.5 bits (59), Expect = 0.43
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
K KCT +GC+ +S LK H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 38.1 bits (89), Expect = 4e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + C + F A L H R+H
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIH 27
Score = 31.9 bits (73), Expect = 0.007
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
R + CP+ +C + F RS L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 30.4 bits (69), Expect = 0.018
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ Y C ++C++RF+ ++L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 26.5 bits (59), Expect = 0.58
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
+ + C + C FS + L RH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.9 bits (86), Expect = 1e-04
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C + GC K F +LKSH H
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 33.1 bits (76), Expect = 0.003
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ Y C CNK+F +NLK H++ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 32.7 bits (75), Expect = 0.003
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
R + CP C K F +S +L+ H+L H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 28.1 bits (63), Expect = 0.15
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKS 321
+ + C DGC F+ + LK H +
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 23.1 bits (50), Expect = 7.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHS 232
C GC +KF +H+ H+
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTHA 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY CD+ GC K+F L H++ H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGK 203
+ Y CD C+K F +L H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 32.3 bits (74), Expect = 0.005
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNE 355
+ C C K+F+R+ L H H E
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 27.7 bits (62), Expect = 0.21
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
+ + C H GC F L RH
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRH 24
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 1e-04
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 329 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY 364
F CP CGKSF +HL+EHM H++ + + C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
Score = 34.7 bits (80), Expect = 7e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVH 262
+ C CGKSF LK H ++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 30.5 bits (69), Expect = 0.021
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 177 YPCDQKNCNKRFTTLSNLKMHMVRH 201
+ C + C K F +LK HM H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 26.6 bits (59), Expect = 0.46
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 297 NFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPC 331
+F C C F+ K LK H K H + R + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYIC 34
Score = 26.2 bits (58), Expect = 0.75
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 209 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 242
C E CG+ F K H+K HS+ Y+C++
Sbjct: 4 CPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 36
Score = 23.9 bits (52), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 300
CGK F L+EH K +H T+++ C
Sbjct: 6 EPACGKSFNFKKHLKEHMK-LHSDTRDYIC 34
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 36.2 bits (84), Expect = 2e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C ++GCGK F L +L++H R+H
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 31.2 bits (71), Expect = 0.011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K + C + C KRF+ NL+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 29.3 bits (66), Expect = 0.050
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ F C CGK F +L+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 25.0 bits (55), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRH 318
K F+CT +GC FS L+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 34.3 bits (78), Expect = 0.002
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 289
Y C CGKSF + H +H+ C CGK+FK+ L H K
Sbjct: 3 LYPCQ---CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMK 51
Score = 33.9 bits (77), Expect = 0.002
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 231
K YPC C K FT S HM H C CG+KF+ H+K H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 32.3 bits (73), Expect = 0.007
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
K + C C F+ KS RH +++ + P CGK F HL HM H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRH---MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 27.3 bits (60), Expect = 0.40
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 336 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 382
CGKSF HM H C + K L H+K
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGL---RPYGCGVCGKKFKMKHHLVGHMK 51
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 33.8 bits (77), Expect = 0.002
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 220 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 262
++ +Y + + + C + GC K+F +++SH + H
Sbjct: 6 SIDKYVKEMPDK-----TFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 31.8 bits (72), Expect = 0.010
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 158 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ + +++ + K + C C K F N++ H+ H
Sbjct: 2 LPRGSIDKYVKEMPD--KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 28.7 bits (64), Expect = 0.14
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 312 KSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 357
+ ++ ++ K + + F C C K+F R +++ H+ H E++
Sbjct: 4 RGSIDKY--VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L HQRVH
Sbjct: 7 PYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 29.1 bits (66), Expect = 0.060
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K Y C + C K F+ S L H H
Sbjct: 6 KPYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 26.4 bits (59), Expect = 0.53
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 336 CGKSFLRSEHLQEHMLQH 353
CGK+F RS L +H H
Sbjct: 13 CGKAFSRSSILVQHQRVH 30
Score = 24.1 bits (53), Expect = 4.0
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
H +KP+ C C F L++H H
Sbjct: 2 HSGEKPYGCVE-------CGKAFSRSSILVQHQRVH 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 32.2 bits (74), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P+ C C ++F L +H R H
Sbjct: 3 PFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 27.6 bits (62), Expect = 0.19
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K + C C + F+ +L H+ H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 26.4 bits (59), Expect = 0.55
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 336 CGKSFLRSEHLQEHMLQH 353
C ++F RS+HL H+ H
Sbjct: 9 CMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.2 bits (74), Expect = 0.005
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
++C+ C ++F LK H R H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 28.4 bits (64), Expect = 0.11
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
+ + C+ C + F +LK H H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 27.6 bits (62), Expect = 0.24
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 336 CGKSFLRSEHLQEHMLQH 353
C ++F R EHL+ H H
Sbjct: 8 CTRAFARQEHLKRHYRSH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.9 bits (73), Expect = 0.006
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 271 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 300
C+ CGK F P L H K VH S + KC
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 27.7 bits (62), Expect = 0.22
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 237 PYMCDYKGCGKSFYLMASLKSH-QRVH 262
PY+C CGK F L H ++VH
Sbjct: 5 PYICQS--CGKGFSRPDHLNGHIKQVH 29
Score = 27.7 bits (62), Expect = 0.23
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 174 KKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K Y C C K F+ +L H+ +
Sbjct: 3 GKPYICQS--CGKGFSRPDHLNGHIKQV 28
Score = 26.9 bits (60), Expect = 0.49
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKHLNMRMFPCPL 333
K + C C FS L H K H + R C +
Sbjct: 4 KPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 25.7 bits (57), Expect = 1.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 336 CGKSFLRSEHLQEHM-LQHNENKPKFTC 362
CGK F R +HL H+ H +P C
Sbjct: 11 CGKGFSRPDHLNGHIKQVHTSERP-HKC 37
Score = 24.6 bits (54), Expect = 2.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 138 KKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCD 180
KP+ C+ C GF L H+ ++ + C
Sbjct: 3 GKPYICQS-------CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.6 bits (72), Expect = 0.009
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C + C K+F L H + +
Sbjct: 8 PYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 28.5 bits (64), Expect = 0.11
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K Y C C+K F L MH R+
Sbjct: 7 KPYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 26.9 bits (60), Expect = 0.37
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 336 CGKSFLRSEHLQEHMLQHNE 355
C K+F + + L H ++++
Sbjct: 14 CDKTFRQKQLLDMHFKRYHD 33
Score = 23.9 bits (52), Expect = 5.1
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 135 HFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK 174
H +KP+ C C F K L H + +
Sbjct: 3 HTGEKPYACS-------HCDKTFRQKQLLDMHFKRYHDPN 35
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.1 bits (71), Expect = 0.013
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K Y C C+ RFT +KMH+++
Sbjct: 7 KPYECYI--CHARFTQSGTMKMHILQK 31
Score = 26.9 bits (60), Expect = 0.46
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 237 PYMCDYKGCGKSFYLMASLKSH-QRVH 262
PY C C F ++K H + H
Sbjct: 8 PYECYI--CHARFTQSGTMKMHILQKH 32
Score = 26.1 bits (58), Expect = 0.72
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 323 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 353
H + + C C F +S ++ H+LQ
Sbjct: 3 HSGEKPYECY--ICHARFTQSGTMKMHILQK 31
Score = 25.3 bits (56), Expect = 1.7
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKH 323
H K ++C C F+ +K H KH
Sbjct: 2 THSGEKPYECYI--CHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 7.2
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 271 CKGCGKQFKVPCRLREHYKAVH 292
C C +F ++ H H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 30.8 bits (69), Expect = 0.015
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C ++GC K F L + LK H++VH
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 30.4 bits (68), Expect = 0.023
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 298 FKCTHDGCKLLFSSKSALKRHNK 320
++C H+GC FS S LKRH K
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEK 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.018
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
+ C C K F L H + H
Sbjct: 2 KFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 26.9 bits (60), Expect = 0.31
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K + C + C KRF +L H+ H
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 25.0 bits (55), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 336 CGKSFLRSEHLQEHMLQHNENK 357
C K F+RS+HL +H+ H K
Sbjct: 8 CPKRFMRSDHLSKHIKTHQNKK 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.023
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY C CGK+F + L +HQR+H
Sbjct: 2 PYKC--LECGKAFSQNSGLINHQRIH 25
Score = 23.7 bits (52), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 336 CGKSFLRSEHLQEHMLQH 353
CGK+F ++ L H H
Sbjct: 8 CGKAFSQNSGLINHQRIH 25
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 30.0 bits (67), Expect = 0.030
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 296 KNFKCTHDGCKLLFSSKSALKRHNKSKH 323
KNF C DGC L F++K+ +K+H H
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNRFH 28
Score = 25.8 bits (56), Expect = 0.95
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVR 200
K + CD C+ RFTT +N+K H R
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNR 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 28.5 bits (64), Expect = 0.10
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVHV 263
P+ C C +SF L H++ H+
Sbjct: 11 PFQCPD--CDRSFSRSDHLALHRKRHM 35
Score = 25.8 bits (57), Expect = 0.99
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K + C C++ F+ +L +H RH
Sbjct: 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 23.5 bits (51), Expect = 6.9
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 291 VHESTKNFKCTHDGCKLLFSSKSALKRHNKSKHLNM 326
K F+C FS L H K +H+ +
Sbjct: 5 GSTGIKPFQCPDCDRS--FSRSDHLALHRK-RHMLV 37
Score = 23.2 bits (50), Expect = 9.7
Identities = 9/40 (22%), Positives = 10/40 (25%), Gaps = 7/40 (17%)
Query: 131 HLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
KPF+C C F L H H
Sbjct: 2 STRGSTGIKPFQCP-------DCDRSFSRSDHLALHRKRH 34
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 28.6 bits (64), Expect = 0.11
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P++C C +F A+ H +VH
Sbjct: 7 PFVCRI--CLSAFTTKANCARHLKVH 30
Score = 27.0 bits (60), Expect = 0.38
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 330 PCPLVTCGKSFLRSEHLQEHMLQHNEN 356
P C +F + H+ H +
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 25.1 bits (55), Expect = 1.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 178 PCDQKNCNKRFTTLSNLKMHMVRH 201
P + C FTT +N H+ H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 28.2 bits (63), Expect = 0.16
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 165 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
R E + Y CD+ C K F+ S+L H H
Sbjct: 2 RSEWQQRERR-RYKCDE--CGKSFSHSSDLSKHRRTH 35
Score = 26.7 bits (59), Expect = 0.52
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 131 HLLKHFDKKPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 170
+ +++ +KC C F L +H +H
Sbjct: 3 SEWQQRERRRYKCD-------ECGKSFSHSSDLSKHRRTH 35
Score = 26.3 bits (58), Expect = 0.67
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
Y CD CGKSF + L H+R H
Sbjct: 12 RYKCDE--CGKSFSHSSDLSKHRRTH 35
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 27.5 bits (61), Expect = 0.20
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
PY+C GC K + +SL+ H +
Sbjct: 2 PYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 25.6 bits (56), Expect = 1.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K Y C C KR+T S+L+ H+
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 25.2 bits (55), Expect = 1.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 360 FTCPYQDCLMSYVAKSSLYAHLKHVH 385
+ C C Y SSL H+K VH
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTVH 28
Score = 24.0 bits (52), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 272 KGCGKQFKVPCRLREHYKAVH 292
GC K++ P LR+H K VH
Sbjct: 8 PGCTKRYTDPSSLRKHVKTVH 28
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.8 bits (59), Expect = 0.57
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 172 EDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 201
D K + C C +RFT +L +H +H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 26.4 bits (58), Expect = 0.65
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ F C CG+ F +HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 25.2 bits (55), Expect = 1.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQRVH 262
P++C GCG+ F L H+ H
Sbjct: 6 PFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.72
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 175 KCYPCDQKNCNKRFTTLSNLKMHMVRH 201
K +PC ++ C K FT+L +L H + H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 24.6 bits (53), Expect = 2.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 327 RMFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ FPC C K F HL H L H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 26.2 bits (57), Expect = 0.87
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 335 TCGKSFLRSEHLQEHMLQHNENKP 358
CGK F HL H L H+ KP
Sbjct: 10 ICGKIFRDVYHLNRHKLSHSGEKP 33
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.7 bits (56), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 328 MFPCPLVTCGKSFLRSEHLQEHMLQH 353
+ PC L CGK F + L++H QH
Sbjct: 6 ILPCGL--CGKVFTDANRLRQHEAQH 29
Score = 25.0 bits (54), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 269 LVCKGCGKQFKVPCRLREHYKAVHEST 295
L C CGK F RLR+H +A H T
Sbjct: 7 LPCGLCGKVFTDANRLRQH-EAQHGVT 32
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 24.9 bits (54), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 237 PYMCDYKGCGKSFYLMASLKSHQ-RVH 262
PYMC+++GC K+F + HQ R H
Sbjct: 2 PYMCEHEGCSKAFSNASDRAKHQNRTH 28
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 24.7 bits (53), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 238 YMCDYKGCGKSFYLMASLKSHQRVH 262
Y+C ++ CGK+F LK HQ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.6 bits (53), Expect = 2.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 300 CTHDGCKLLFSSKSALKRHNKSKHLNMR 327
C GC +FS++ L H K +H++ +
Sbjct: 3 CDFPGCGRIFSNRQYLNHHKKYQHIHQK 30
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 25.7 bits (56), Expect = 4.3
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 40 IPRTVCGDILENMFVFCVRHADVLIMPANHVLTVSWVYEEDAITEALQSL 89
I + ++ F + ++ + P V + E A A+ S+
Sbjct: 26 IASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESA-AHAIVSV 74
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 24.7 bits (54), Expect = 5.3
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 298 FKCTHDGCKLLFSSKSALKRHNKSK 322
+C C F + LK H +SK
Sbjct: 16 HRCLA--CARYFIDSTNLKTHFRSK 38
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 6.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 178 PCDQKNCNKRFTTLSNLKMHMVRHG 202
C K C K F S ++ H+ HG
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTHG 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.0 bits (49), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 245 CGKSFYLMASLKSHQRVH 262
CGK+F + LK HQ VH
Sbjct: 8 CGKAFVESSKLKRHQLVH 25
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 23.9 bits (51), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 266 PEDLVCKGCGKQFKVPCRLREHYKAVHES 294
P V +GC F + L HY+AVH+S
Sbjct: 20 PYRCVHQGCFAAFTIQQNLILHYQAVHKS 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.133 0.431
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,441,238
Number of extensions: 66981
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 164
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.0 bits)