BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1107
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 100 WSKICYIHACDISP-RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158
WS + + CD+ R K L A K V CDVT+ L VP D
Sbjct: 126 WSPV-VTYVCDLEGNRVKGPEKEEKLRQAVK-QVLKCDVTQSQPLGAVPLPPADCVLSTL 183
Query: 159 VLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189
L A P+ + ++NL +LK GG ++ D
Sbjct: 184 CLDAACPDLPTYCRALRNLGSLLKPGGFLVIMD 216
>pdb|2I62|A Chain A, Mouse Nicotinamide N-methyltransferase
pdb|2I62|B Chain B, Mouse Nicotinamide N-methyltransferase
pdb|2I62|C Chain C, Mouse Nicotinamide N-methyltransferase
pdb|2I62|D Chain D, Mouse Nicotinamide N-methyltransferase
Length = 265
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 131 NVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFR 188
V CDVT+ L V D L A P+ + T ++NL +LK GG ++
Sbjct: 138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV 197
Query: 189 D 189
D
Sbjct: 198 D 198
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 64 NWTVNEFHEFVNQDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123
N+++ EF EF D +W I IH D+ R FF ++P
Sbjct: 36 NYSIEEFREFKTTDVESVLPFRDSSTP--------TWINITGIHRTDVVQRVGEFFGIHP 87
Query: 124 LYDASKMNV 132
L +NV
Sbjct: 88 LVLEDILNV 96
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 64 NWTVNEFHEFVNQDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123
N+++ EF EF D +W I IH D+ R FF ++P
Sbjct: 45 NYSIEEFREFKTTDVESVLPFRDSSTP--------TWINITGIHRTDVVQRVGEFFGIHP 96
Query: 124 LYDASKMNV 132
L +NV
Sbjct: 97 LVLEDILNV 105
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 64 NWTVNEFHEFVNQDXXXXXXXXXXXXXXNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123
N+++ EF EF D +W I IH D+ R FF ++P
Sbjct: 12 NYSIEEFREFKTTDVESVLPFRDSSTP--------TWINITGIHRTDVVQRVGEFFGIHP 63
Query: 124 LYDASKMNV 132
L +NV
Sbjct: 64 LVLEDILNV 72
>pdb|3PNU|A Chain A, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni.
pdb|3PNU|B Chain B, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni
Length = 359
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 7 FSNSVVAPILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWT 66
FS V+ P+L + L +QNS +++ + + N K +DL +K ++ +++ W
Sbjct: 280 FSAPVILPVLAE-----LFKQNSS--EENLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQ 332
Query: 67 VNEFHE 72
V +E
Sbjct: 333 VPNVYE 338
>pdb|2J4X|A Chain A, Streptococcus Dysgalactiae-Derived Mitogen (Sdm)
Length = 213
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 44 KKKYWDLFYKRNETKF---FKDRNWTVNE 69
KK YW + YK N TKF F N+T NE
Sbjct: 164 KKGYWGIHYKDNTTKFTDLFTHPNYTDNE 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,861,459
Number of Sequences: 62578
Number of extensions: 208398
Number of successful extensions: 474
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 11
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)