Query psy1107
Match_columns 218
No_of_seqs 151 out of 1931
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 17:15:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361|consensus 100.0 1.4E-35 3.1E-40 218.9 13.8 204 15-218 2-212 (264)
2 COG2226 UbiE Methylase involve 99.9 2.1E-21 4.6E-26 147.2 15.2 113 79-197 51-164 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 1.8E-20 3.9E-25 143.4 9.8 128 61-196 31-160 (233)
4 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.3E-20 4.9E-25 139.4 7.8 153 29-195 9-167 (243)
5 PLN02233 ubiquinone biosynthes 99.8 7.3E-18 1.6E-22 131.7 16.2 113 76-194 70-187 (261)
6 PF12847 Methyltransf_18: Meth 99.8 1.9E-18 4.2E-23 118.1 10.2 106 79-189 1-111 (112)
7 PF13847 Methyltransf_31: Meth 99.8 2.9E-18 6.3E-23 123.6 10.5 109 78-191 2-112 (152)
8 TIGR03840 TMPT_Se_Te thiopurin 99.8 1.1E-17 2.4E-22 126.4 14.0 139 46-191 1-154 (213)
9 PTZ00098 phosphoethanolamine N 99.8 1E-17 2.2E-22 131.0 13.8 147 36-193 12-160 (263)
10 PF08241 Methyltransf_11: Meth 99.8 4.4E-18 9.5E-23 112.6 9.4 95 84-187 1-95 (95)
11 PLN02396 hexaprenyldihydroxybe 99.8 1.1E-17 2.4E-22 133.4 12.5 107 79-193 131-239 (322)
12 PLN02244 tocopherol O-methyltr 99.8 2.2E-17 4.8E-22 133.6 14.2 108 78-192 117-226 (340)
13 TIGR00477 tehB tellurite resis 99.7 1.6E-17 3.5E-22 124.4 10.0 106 78-190 29-134 (195)
14 PRK11207 tellurite resistance 99.7 5.4E-17 1.2E-21 121.8 12.8 104 78-188 29-133 (197)
15 PF13649 Methyltransf_25: Meth 99.7 7.9E-18 1.7E-22 113.0 6.4 97 83-183 1-101 (101)
16 KOG1540|consensus 99.7 2.4E-16 5.1E-21 118.2 14.6 115 75-195 96-220 (296)
17 PRK15451 tRNA cmo(5)U34 methyl 99.7 9.9E-17 2.1E-21 124.5 12.2 108 77-190 54-165 (247)
18 KOG4300|consensus 99.7 1.8E-17 3.9E-22 120.5 7.3 136 77-218 74-211 (252)
19 KOG1270|consensus 99.7 3.6E-17 7.9E-22 123.2 8.9 154 29-193 31-199 (282)
20 PF03848 TehB: Tellurite resis 99.7 1.2E-16 2.7E-21 117.6 10.8 107 77-190 28-134 (192)
21 PRK13255 thiopurine S-methyltr 99.7 4.1E-16 8.8E-21 118.4 14.0 136 45-187 3-153 (218)
22 PRK11036 putative S-adenosyl-L 99.7 1E-16 2.2E-21 125.1 10.6 109 78-193 43-153 (255)
23 TIGR02752 MenG_heptapren 2-hep 99.7 1.9E-16 4.2E-21 121.8 12.0 112 76-193 42-155 (231)
24 PRK14103 trans-aconitate 2-met 99.7 1.8E-16 3.9E-21 123.7 11.8 101 77-190 27-127 (255)
25 smart00138 MeTrc Methyltransfe 99.7 2.3E-16 5E-21 123.3 12.2 142 46-191 57-244 (264)
26 PF08242 Methyltransf_12: Meth 99.7 1E-17 2.2E-22 112.1 3.5 98 84-185 1-99 (99)
27 PF05401 NodS: Nodulation prot 99.7 4.6E-16 9.9E-21 113.5 12.3 137 46-191 7-148 (201)
28 TIGR00740 methyltransferase, p 99.7 2.1E-16 4.6E-21 122.2 11.0 108 78-191 52-163 (239)
29 TIGR03587 Pse_Me-ase pseudamin 99.7 6.3E-16 1.4E-20 116.3 13.0 109 75-194 39-147 (204)
30 PLN02336 phosphoethanolamine N 99.7 4.7E-16 1E-20 131.6 12.7 110 77-193 264-373 (475)
31 PRK12335 tellurite resistance 99.7 3.3E-16 7.1E-21 124.2 10.6 104 79-189 120-223 (287)
32 PRK00107 gidB 16S rRNA methylt 99.7 7E-16 1.5E-20 114.2 10.1 104 78-192 44-148 (187)
33 PRK10258 biotin biosynthesis p 99.7 2.6E-15 5.5E-20 117.0 13.7 106 79-196 42-147 (251)
34 TIGR02072 BioC biotin biosynth 99.7 1.3E-15 2.8E-20 117.6 11.8 108 78-194 33-140 (240)
35 PRK06922 hypothetical protein; 99.7 9E-16 1.9E-20 130.4 11.2 112 77-190 416-538 (677)
36 PF13489 Methyltransf_23: Meth 99.7 1.2E-15 2.5E-20 110.8 10.2 100 77-193 20-119 (161)
37 PRK05785 hypothetical protein; 99.6 6.1E-15 1.3E-19 112.8 14.3 99 78-192 50-148 (226)
38 PRK01683 trans-aconitate 2-met 99.6 2E-15 4.4E-20 118.0 12.0 102 77-189 29-130 (258)
39 PRK15068 tRNA mo(5)U34 methylt 99.6 9.8E-16 2.1E-20 122.9 10.3 105 78-190 121-227 (322)
40 KOG1271|consensus 99.6 8.8E-16 1.9E-20 109.6 8.8 144 42-189 15-181 (227)
41 PRK13256 thiopurine S-methyltr 99.6 5.4E-15 1.2E-19 111.9 13.6 144 43-191 7-165 (226)
42 PF05724 TPMT: Thiopurine S-me 99.6 5.6E-15 1.2E-19 111.9 13.4 136 45-187 3-153 (218)
43 PF05175 MTS: Methyltransferas 99.6 1.6E-15 3.5E-20 111.2 10.1 106 79-189 31-140 (170)
44 PRK11873 arsM arsenite S-adeno 99.6 2E-15 4.3E-20 119.0 11.2 110 76-191 74-185 (272)
45 smart00828 PKS_MT Methyltransf 99.6 1.9E-15 4E-20 115.8 10.8 104 81-191 1-106 (224)
46 PRK08317 hypothetical protein; 99.6 3.6E-15 7.9E-20 115.1 12.4 110 75-190 15-125 (241)
47 TIGR00452 methyltransferase, p 99.6 3.3E-15 7.2E-20 118.8 11.4 106 77-190 119-226 (314)
48 PF02353 CMAS: Mycolic acid cy 99.6 3.6E-15 7.8E-20 116.7 10.8 112 75-194 58-171 (273)
49 PLN02490 MPBQ/MSBQ methyltrans 99.6 5.1E-15 1.1E-19 118.7 11.6 104 78-189 112-215 (340)
50 PRK06202 hypothetical protein; 99.6 5.8E-15 1.3E-19 113.7 11.5 110 77-194 58-171 (232)
51 PLN03075 nicotianamine synthas 99.6 1.7E-14 3.7E-19 112.9 14.0 106 79-189 123-233 (296)
52 TIGR00138 gidB 16S rRNA methyl 99.6 6E-15 1.3E-19 109.0 10.3 100 79-189 42-142 (181)
53 COG4106 Tam Trans-aconitate me 99.6 3.6E-15 7.7E-20 109.4 8.6 102 76-188 27-128 (257)
54 TIGR02716 C20_methyl_CrtF C-20 99.6 1.1E-14 2.4E-19 116.6 11.5 109 77-192 147-257 (306)
55 PRK00216 ubiE ubiquinone/menaq 99.6 2.3E-14 4.9E-19 110.7 12.5 110 78-193 50-162 (239)
56 PRK00121 trmB tRNA (guanine-N( 99.6 5E-15 1.1E-19 111.5 8.2 109 79-189 40-156 (202)
57 COG2230 Cfa Cyclopropane fatty 99.6 1.1E-14 2.4E-19 112.7 10.2 112 75-194 68-181 (283)
58 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.8E-14 6E-19 109.1 12.3 108 78-192 38-146 (223)
59 TIGR03438 probable methyltrans 99.6 2.2E-14 4.8E-19 114.4 11.4 148 40-189 23-177 (301)
60 TIGR02469 CbiT precorrin-6Y C5 99.6 4.6E-14 9.9E-19 97.9 10.8 104 78-189 18-122 (124)
61 TIGR03533 L3_gln_methyl protei 99.6 2.4E-14 5.2E-19 113.1 10.4 106 79-189 121-251 (284)
62 TIGR02021 BchM-ChlM magnesium 99.6 4.5E-14 9.7E-19 107.8 11.6 103 77-188 53-157 (219)
63 PRK11705 cyclopropane fatty ac 99.6 3.7E-14 8E-19 116.3 11.7 109 76-194 164-272 (383)
64 PLN02336 phosphoethanolamine N 99.5 5.4E-14 1.2E-18 119.1 12.0 109 78-191 36-144 (475)
65 PRK15001 SAM-dependent 23S rib 99.5 4.1E-14 9E-19 115.0 10.6 105 80-189 229-340 (378)
66 TIGR00537 hemK_rel_arch HemK-r 99.5 9.4E-14 2E-18 102.8 10.9 108 78-193 18-144 (179)
67 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.8E-14 6E-19 106.9 8.0 110 79-189 16-132 (194)
68 PRK05134 bifunctional 3-demeth 99.5 1.6E-13 3.6E-18 105.7 12.5 108 77-191 46-153 (233)
69 PRK14966 unknown domain/N5-glu 99.5 3E-14 6.5E-19 116.1 8.4 110 77-189 249-381 (423)
70 PRK11805 N5-glutamine S-adenos 99.5 6.1E-14 1.3E-18 111.8 10.0 104 81-189 135-263 (307)
71 TIGR00536 hemK_fam HemK family 99.5 6.4E-14 1.4E-18 110.9 10.0 104 81-189 116-244 (284)
72 PRK09489 rsmC 16S ribosomal RN 99.5 1.7E-13 3.7E-18 110.6 12.4 105 79-189 196-303 (342)
73 PRK11188 rrmJ 23S rRNA methylt 99.5 2.1E-13 4.6E-18 103.1 12.2 112 77-198 49-174 (209)
74 PRK08287 cobalt-precorrin-6Y C 99.5 1.1E-13 2.4E-18 103.1 10.3 103 76-189 28-131 (187)
75 PRK07580 Mg-protoporphyrin IX 99.5 1.8E-13 3.9E-18 105.2 11.8 101 77-186 61-163 (230)
76 PRK13944 protein-L-isoaspartat 99.5 1.6E-13 3.4E-18 103.7 10.8 101 77-189 70-173 (205)
77 TIGR03534 RF_mod_PrmC protein- 99.5 1.1E-13 2.5E-18 107.7 10.2 106 79-189 87-217 (251)
78 PRK09328 N5-glutamine S-adenos 99.5 1.8E-13 3.8E-18 108.1 10.7 108 77-189 106-238 (275)
79 PRK11088 rrmA 23S rRNA methylt 99.5 1.6E-13 3.4E-18 108.1 10.2 99 79-194 85-186 (272)
80 PF03291 Pox_MCEL: mRNA cappin 99.5 6.7E-14 1.4E-18 112.2 8.1 112 79-191 62-188 (331)
81 PRK04266 fibrillarin; Provisio 99.5 4.8E-13 1E-17 102.0 11.9 105 76-187 69-174 (226)
82 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.8E-13 3.9E-18 111.0 10.0 110 78-189 121-235 (390)
83 PRK13942 protein-L-isoaspartat 99.5 2.8E-13 6E-18 102.8 10.1 103 75-189 72-176 (212)
84 PF13659 Methyltransf_26: Meth 99.5 1.5E-13 3.2E-18 94.5 7.9 107 80-189 1-115 (117)
85 PF08003 Methyltransf_9: Prote 99.5 2.8E-13 6E-18 105.2 9.8 107 77-191 113-221 (315)
86 TIGR00080 pimt protein-L-isoas 99.5 5.5E-13 1.2E-17 101.5 11.2 102 76-189 74-177 (215)
87 COG4123 Predicted O-methyltran 99.5 2.7E-13 5.8E-18 103.3 9.1 113 75-189 40-170 (248)
88 PF00891 Methyltransf_2: O-met 99.5 4.3E-13 9.2E-18 103.9 10.0 104 76-192 97-202 (241)
89 PLN02585 magnesium protoporphy 99.5 1.1E-12 2.3E-17 104.6 12.4 98 79-186 144-247 (315)
90 COG2813 RsmC 16S RNA G1207 met 99.5 1.4E-12 3.1E-17 101.3 12.0 110 79-194 158-271 (300)
91 PRK14967 putative methyltransf 99.4 9.1E-13 2E-17 100.8 10.3 107 77-189 34-159 (223)
92 TIGR00406 prmA ribosomal prote 99.4 1.1E-12 2.3E-17 104.1 10.4 108 77-196 157-266 (288)
93 COG2264 PrmA Ribosomal protein 99.4 7.1E-13 1.5E-17 103.5 8.8 104 77-191 160-265 (300)
94 TIGR01983 UbiG ubiquinone bios 99.4 1.6E-12 3.4E-17 99.6 10.4 106 79-191 45-151 (224)
95 TIGR01177 conserved hypothetic 99.4 2.2E-12 4.7E-17 104.3 10.9 115 76-196 179-301 (329)
96 COG2890 HemK Methylase of poly 99.4 1.3E-12 2.9E-17 102.7 9.1 103 82-190 113-239 (280)
97 PRK00377 cbiT cobalt-precorrin 99.4 2.1E-12 4.6E-17 97.0 9.9 105 76-188 37-144 (198)
98 PRK00312 pcm protein-L-isoaspa 99.4 2.9E-12 6.3E-17 97.3 10.7 102 75-190 74-176 (212)
99 PRK07402 precorrin-6B methylas 99.4 2.3E-12 5E-17 96.7 9.9 109 76-193 37-146 (196)
100 KOG1975|consensus 99.4 7.8E-13 1.7E-17 102.6 7.4 150 33-188 73-236 (389)
101 PF06325 PrmA: Ribosomal prote 99.4 1.3E-12 2.9E-17 102.8 8.6 110 75-196 157-266 (295)
102 PRK04457 spermidine synthase; 99.4 3.6E-12 7.8E-17 99.6 10.9 114 77-193 64-181 (262)
103 cd02440 AdoMet_MTases S-adenos 99.4 5.2E-12 1.1E-16 84.1 10.1 102 82-188 1-103 (107)
104 KOG3010|consensus 99.4 2.5E-12 5.5E-17 96.1 9.2 101 81-191 35-139 (261)
105 COG2242 CobL Precorrin-6B meth 99.4 5.9E-12 1.3E-16 91.3 10.7 105 75-189 30-135 (187)
106 PRK01544 bifunctional N5-gluta 99.4 2.4E-12 5.3E-17 109.2 9.8 104 80-188 139-268 (506)
107 PRK00517 prmA ribosomal protei 99.4 4.2E-12 9E-17 98.8 10.1 101 77-195 117-219 (250)
108 PF07021 MetW: Methionine bios 99.4 3.5E-12 7.6E-17 93.1 9.0 93 75-178 9-101 (193)
109 PF01739 CheR: CheR methyltran 99.4 3.9E-12 8.4E-17 94.7 9.1 109 78-190 30-176 (196)
110 PRK10611 chemotaxis methyltran 99.4 1.6E-11 3.5E-16 96.4 12.8 133 53-190 90-263 (287)
111 PRK14968 putative methyltransf 99.4 8.8E-12 1.9E-16 92.8 11.0 106 78-190 22-149 (188)
112 TIGR03704 PrmC_rel_meth putati 99.4 2.5E-12 5.5E-17 99.9 8.0 106 80-189 87-216 (251)
113 COG2518 Pcm Protein-L-isoaspar 99.3 1.2E-11 2.5E-16 91.7 10.4 102 75-190 68-170 (209)
114 TIGR02081 metW methionine bios 99.3 1.5E-11 3.3E-16 92.1 11.0 95 76-181 10-104 (194)
115 PTZ00146 fibrillarin; Provisio 99.3 1.7E-11 3.7E-16 95.8 11.3 106 76-187 129-235 (293)
116 COG1352 CheR Methylase of chem 99.3 3.9E-11 8.5E-16 93.1 12.9 143 45-191 54-243 (268)
117 PRK00811 spermidine synthase; 99.3 1E-11 2.2E-16 98.2 9.6 109 78-189 75-191 (283)
118 PRK10901 16S rRNA methyltransf 99.3 2.3E-11 5.1E-16 101.6 12.1 113 75-189 240-372 (427)
119 PF05891 Methyltransf_PK: AdoM 99.3 2.7E-11 5.8E-16 90.1 10.3 106 79-189 55-161 (218)
120 TIGR00438 rrmJ cell division p 99.3 2.4E-11 5.2E-16 90.6 10.2 110 75-194 28-151 (188)
121 PLN02781 Probable caffeoyl-CoA 99.3 2.4E-11 5.3E-16 93.4 9.9 111 73-188 62-177 (234)
122 KOG2899|consensus 99.3 1.4E-11 3.1E-16 92.1 8.1 113 75-188 54-208 (288)
123 PHA03411 putative methyltransf 99.3 6.4E-11 1.4E-15 91.7 11.6 103 77-188 62-182 (279)
124 PF01135 PCMT: Protein-L-isoas 99.3 8.5E-12 1.8E-16 93.9 6.3 104 75-190 68-173 (209)
125 PF02390 Methyltransf_4: Putat 99.3 1.6E-11 3.5E-16 91.7 7.7 109 80-189 18-133 (195)
126 PRK13943 protein-L-isoaspartat 99.3 2.4E-11 5.3E-16 97.1 8.3 102 76-189 77-180 (322)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.2 6.2E-11 1.3E-15 92.9 10.3 111 75-189 67-199 (264)
128 PF06080 DUF938: Protein of un 99.2 5.6E-11 1.2E-15 88.0 9.3 108 82-189 28-141 (204)
129 PRK14903 16S rRNA methyltransf 99.2 8.4E-11 1.8E-15 98.1 11.3 113 75-190 233-367 (431)
130 PLN02232 ubiquinone biosynthes 99.2 4.1E-11 9E-16 86.9 8.3 82 107-194 1-86 (160)
131 TIGR00563 rsmB ribosomal RNA s 99.2 1.7E-10 3.7E-15 96.4 12.3 115 75-191 234-370 (426)
132 PRK14901 16S rRNA methyltransf 99.2 1.5E-10 3.3E-15 96.9 11.7 114 76-189 249-384 (434)
133 PRK14904 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 96.4 11.9 113 75-192 246-380 (445)
134 COG0220 Predicted S-adenosylme 99.2 6.1E-11 1.3E-15 90.1 7.8 107 81-189 50-164 (227)
135 PRK01581 speE spermidine synth 99.2 1.9E-10 4.1E-15 92.4 10.9 110 77-189 148-268 (374)
136 PLN02366 spermidine synthase 99.2 1.9E-10 4.2E-15 91.5 10.5 108 78-187 90-204 (308)
137 PRK14902 16S rRNA methyltransf 99.2 2.3E-10 5.1E-15 96.1 11.5 111 76-189 247-379 (444)
138 COG4122 Predicted O-methyltran 99.2 1.2E-10 2.7E-15 87.5 8.7 110 72-188 52-165 (219)
139 COG4976 Predicted methyltransf 99.2 1.4E-11 3.1E-16 91.4 3.5 111 69-189 113-225 (287)
140 PF01596 Methyltransf_3: O-met 99.2 7.7E-11 1.7E-15 88.5 7.3 110 75-189 41-155 (205)
141 KOG2904|consensus 99.2 3E-10 6.4E-15 86.6 10.4 110 78-189 147-285 (328)
142 KOG1541|consensus 99.2 2E-10 4.4E-15 84.8 9.2 111 77-196 48-167 (270)
143 PRK15128 23S rRNA m(5)C1962 me 99.2 1.8E-10 3.8E-15 94.9 9.9 113 76-189 217-339 (396)
144 PHA03412 putative methyltransf 99.2 3.2E-10 6.9E-15 85.9 10.4 99 79-187 49-160 (241)
145 TIGR00417 speE spermidine synt 99.2 1.8E-10 4E-15 90.5 9.5 108 79-189 72-186 (270)
146 PRK13168 rumA 23S rRNA m(5)U19 99.2 2.6E-10 5.6E-15 95.8 10.5 105 77-189 295-400 (443)
147 PF10294 Methyltransf_16: Puta 99.2 1.2E-10 2.6E-15 85.5 7.1 113 76-191 42-158 (173)
148 PF05148 Methyltransf_8: Hypot 99.1 1E-09 2.2E-14 81.0 11.5 103 63-189 53-158 (219)
149 smart00650 rADc Ribosomal RNA 99.1 7.9E-10 1.7E-14 81.0 11.0 99 77-187 11-111 (169)
150 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2.1E-10 4.6E-15 101.2 9.2 114 72-189 531-656 (702)
151 COG2519 GCD14 tRNA(1-methylade 99.1 4.7E-10 1E-14 85.1 9.8 103 75-189 90-195 (256)
152 PRK10909 rsmD 16S rRNA m(2)G96 99.1 6.5E-10 1.4E-14 83.2 10.4 108 78-192 52-162 (199)
153 PLN02476 O-methyltransferase 99.1 5.1E-10 1.1E-14 87.4 10.0 112 72-188 111-227 (278)
154 PLN02672 methionine S-methyltr 99.1 4.9E-10 1.1E-14 101.3 9.4 108 80-190 119-279 (1082)
155 PF05219 DREV: DREV methyltran 99.1 1.5E-09 3.3E-14 82.7 10.6 107 66-188 74-187 (265)
156 PF08704 GCD14: tRNA methyltra 99.1 7.9E-10 1.7E-14 85.0 8.9 107 75-189 36-146 (247)
157 PRK03612 spermidine synthase; 99.1 1.2E-09 2.5E-14 93.4 10.5 109 78-189 296-415 (521)
158 KOG1499|consensus 99.1 4.8E-10 1E-14 88.6 7.3 106 75-186 56-164 (346)
159 COG2263 Predicted RNA methylas 99.1 1.1E-09 2.4E-14 79.4 8.5 73 77-157 43-115 (198)
160 PRK03522 rumB 23S rRNA methylu 99.0 1.4E-09 3.1E-14 87.4 9.2 101 79-189 173-274 (315)
161 COG3963 Phospholipid N-methylt 99.0 3.9E-09 8.5E-14 74.8 10.2 128 63-195 33-162 (194)
162 COG1041 Predicted DNA modifica 99.0 3.6E-09 7.8E-14 84.1 9.8 110 75-190 193-311 (347)
163 PF12147 Methyltransf_20: Puta 99.0 9.1E-09 2E-13 79.6 11.6 113 76-189 132-249 (311)
164 PLN02589 caffeoyl-CoA O-methyl 99.0 2.8E-09 6E-14 82.2 7.9 106 75-187 75-188 (247)
165 TIGR02085 meth_trns_rumB 23S r 99.0 4.5E-09 9.7E-14 86.4 9.6 123 57-189 208-334 (374)
166 TIGR00479 rumA 23S rRNA (uraci 98.9 4.1E-09 8.9E-14 88.4 8.6 106 77-189 290-396 (431)
167 PLN02823 spermine synthase 98.9 8.6E-09 1.9E-13 83.0 9.8 107 78-188 102-219 (336)
168 PF02527 GidB: rRNA small subu 98.9 1.3E-08 2.9E-13 75.1 9.9 97 82-189 51-148 (184)
169 KOG1331|consensus 98.9 7.7E-09 1.7E-13 79.6 8.8 132 50-194 16-148 (293)
170 TIGR00095 RNA methyltransferas 98.9 7E-09 1.5E-13 77.2 8.4 107 77-189 47-159 (189)
171 PRK04338 N(2),N(2)-dimethylgua 98.9 5.1E-09 1.1E-13 85.9 8.1 100 80-189 58-158 (382)
172 KOG3191|consensus 98.9 1.3E-08 2.8E-13 73.2 8.8 112 80-196 44-175 (209)
173 KOG3420|consensus 98.9 3.7E-09 8.1E-14 73.2 5.6 78 78-160 47-124 (185)
174 KOG2940|consensus 98.9 1.9E-09 4.1E-14 80.3 4.3 115 78-200 71-185 (325)
175 PRK01544 bifunctional N5-gluta 98.9 6E-09 1.3E-13 88.7 7.8 110 78-189 346-462 (506)
176 KOG3178|consensus 98.9 1.3E-08 2.9E-13 80.6 8.7 102 80-193 178-279 (342)
177 COG1092 Predicted SAM-dependen 98.9 9.3E-09 2E-13 83.9 7.6 112 77-189 215-336 (393)
178 PF01170 UPF0020: Putative RNA 98.9 1.3E-08 2.9E-13 75.1 7.8 109 75-187 24-149 (179)
179 PF05185 PRMT5: PRMT5 arginine 98.8 9.9E-09 2.1E-13 85.8 7.7 103 80-187 187-295 (448)
180 KOG3045|consensus 98.8 2.5E-08 5.5E-13 75.6 8.9 90 75-190 176-265 (325)
181 PRK11727 23S rRNA mA1618 methy 98.8 1.8E-08 4E-13 80.4 8.7 82 79-162 114-201 (321)
182 PF03602 Cons_hypoth95: Conser 98.8 5E-09 1.1E-13 77.5 4.6 120 68-191 30-155 (183)
183 TIGR03439 methyl_EasF probable 98.8 8.6E-08 1.9E-12 76.6 11.8 147 40-188 36-196 (319)
184 PF02475 Met_10: Met-10+ like- 98.8 2.2E-08 4.8E-13 74.8 7.5 104 71-185 93-198 (200)
185 COG0421 SpeE Spermidine syntha 98.8 6.5E-08 1.4E-12 76.0 10.2 109 75-188 73-189 (282)
186 COG0357 GidB Predicted S-adeno 98.8 1.2E-07 2.7E-12 71.2 11.2 97 80-187 68-166 (215)
187 PRK04148 hypothetical protein; 98.8 1.4E-07 3.1E-12 65.4 10.4 98 79-194 16-114 (134)
188 PRK11933 yebU rRNA (cytosine-C 98.7 9.2E-08 2E-12 80.4 10.3 111 76-189 110-242 (470)
189 KOG1500|consensus 98.7 6.2E-08 1.3E-12 76.2 7.9 104 77-187 175-280 (517)
190 TIGR00755 ksgA dimethyladenosi 98.7 3.2E-07 7E-12 71.6 11.9 62 76-140 26-87 (253)
191 PF01728 FtsJ: FtsJ-like methy 98.7 9.5E-09 2.1E-13 76.1 3.0 107 79-195 23-145 (181)
192 KOG1661|consensus 98.7 8.4E-08 1.8E-12 70.7 7.5 103 75-189 78-193 (237)
193 PRK14896 ksgA 16S ribosomal RN 98.7 1.8E-07 3.9E-12 73.2 9.4 74 77-159 27-100 (258)
194 PF09445 Methyltransf_15: RNA 98.7 8.3E-08 1.8E-12 69.1 6.7 71 82-156 2-75 (163)
195 PRK00274 ksgA 16S ribosomal RN 98.6 2.7E-07 5.9E-12 72.7 10.0 74 76-157 39-112 (272)
196 PF10672 Methyltrans_SAM: S-ad 98.6 5.7E-08 1.2E-12 76.4 6.0 118 70-189 114-238 (286)
197 PF01564 Spermine_synth: Sperm 98.6 1.1E-07 2.5E-12 73.6 7.6 110 78-189 75-191 (246)
198 COG2521 Predicted archaeal met 98.6 9.4E-08 2E-12 71.6 6.6 112 75-189 130-245 (287)
199 TIGR00478 tly hemolysin TlyA f 98.6 6.3E-07 1.4E-11 68.4 11.3 95 78-188 74-170 (228)
200 PRK05031 tRNA (uracil-5-)-meth 98.6 1.3E-07 2.8E-12 77.5 7.8 100 81-189 208-320 (362)
201 COG0742 N6-adenine-specific me 98.6 3.5E-07 7.6E-12 67.0 8.6 116 68-189 31-154 (187)
202 PF11968 DUF3321: Putative met 98.6 5.9E-07 1.3E-11 67.0 9.9 129 43-189 10-149 (219)
203 PF04672 Methyltransf_19: S-ad 98.6 1.6E-07 3.5E-12 72.5 6.7 115 79-193 68-194 (267)
204 KOG1663|consensus 98.6 5.9E-07 1.3E-11 67.3 8.9 109 75-188 69-182 (237)
205 PF03141 Methyltransf_29: Puta 98.6 4.3E-08 9.3E-13 81.2 3.2 107 78-193 116-223 (506)
206 TIGR02143 trmA_only tRNA (urac 98.6 2.7E-07 5.9E-12 75.3 7.9 100 81-189 199-311 (353)
207 KOG1709|consensus 98.6 1E-06 2.2E-11 65.3 10.0 107 77-188 99-205 (271)
208 COG2520 Predicted methyltransf 98.5 6.5E-07 1.4E-11 71.8 9.6 112 73-195 182-295 (341)
209 TIGR00308 TRM1 tRNA(guanine-26 98.5 3.1E-07 6.8E-12 75.1 7.7 100 81-189 46-147 (374)
210 PTZ00338 dimethyladenosine tra 98.5 2.2E-07 4.8E-12 73.8 6.4 75 76-158 33-109 (294)
211 PRK00050 16S rRNA m(4)C1402 me 98.5 4.1E-07 8.8E-12 71.9 7.6 81 77-158 17-98 (296)
212 KOG2730|consensus 98.5 2.2E-07 4.9E-12 68.9 5.5 77 79-157 94-172 (263)
213 KOG4589|consensus 98.5 3.7E-07 8E-12 66.1 6.4 116 75-200 65-195 (232)
214 PF09243 Rsm22: Mitochondrial 98.5 1.1E-06 2.4E-11 69.2 9.7 114 77-196 31-146 (274)
215 COG2265 TrmA SAM-dependent met 98.5 7.7E-07 1.7E-11 74.1 9.2 124 56-189 267-396 (432)
216 COG0144 Sun tRNA and rRNA cyto 98.5 1.8E-06 3.9E-11 70.5 10.7 114 74-189 151-288 (355)
217 PF07942 N2227: N2227-like pro 98.5 1.9E-06 4E-11 67.1 9.8 105 78-187 55-200 (270)
218 COG0293 FtsJ 23S rRNA methylas 98.5 6.1E-07 1.3E-11 66.7 6.7 113 75-197 41-167 (205)
219 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 8.8E-07 1.9E-11 68.5 7.7 111 78-190 55-200 (256)
220 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.1E-06 2.4E-11 70.7 8.6 113 75-189 42-183 (311)
221 PRK00536 speE spermidine synth 98.4 3E-06 6.4E-11 65.9 9.9 95 78-188 71-170 (262)
222 TIGR00006 S-adenosyl-methyltra 98.4 4.3E-06 9.3E-11 66.3 10.8 90 66-156 8-98 (305)
223 COG3897 Predicted methyltransf 98.4 1.8E-06 3.8E-11 63.1 7.5 109 77-196 77-186 (218)
224 KOG3987|consensus 98.4 8.2E-07 1.8E-11 65.4 5.3 106 66-188 94-206 (288)
225 PF01269 Fibrillarin: Fibrilla 98.4 1.2E-05 2.7E-10 60.3 11.6 109 75-189 69-178 (229)
226 COG4076 Predicted RNA methylas 98.3 1.6E-06 3.6E-11 62.9 6.5 99 81-187 34-133 (252)
227 KOG0820|consensus 98.3 1.9E-06 4.2E-11 66.1 7.2 74 75-156 54-129 (315)
228 KOG2352|consensus 98.3 4.7E-06 1E-10 69.0 9.8 109 78-191 46-163 (482)
229 COG0030 KsgA Dimethyladenosine 98.3 1E-05 2.2E-10 62.6 11.0 76 75-156 26-101 (259)
230 KOG1269|consensus 98.3 9.1E-07 2E-11 71.9 5.5 110 75-191 106-217 (364)
231 PF07091 FmrO: Ribosomal RNA m 98.3 1.6E-06 3.4E-11 66.2 5.8 123 66-196 92-214 (251)
232 TIGR02987 met_A_Alw26 type II 98.3 3.9E-06 8.5E-11 72.2 8.8 81 79-159 31-121 (524)
233 COG0500 SmtA SAM-dependent met 98.3 2.3E-05 5E-10 56.0 11.5 106 83-194 52-160 (257)
234 PF08123 DOT1: Histone methyla 98.3 3.4E-06 7.5E-11 63.4 6.8 109 75-187 38-156 (205)
235 KOG2915|consensus 98.2 8.9E-06 1.9E-10 62.5 8.7 104 75-187 101-208 (314)
236 PF03059 NAS: Nicotianamine sy 98.2 9.2E-06 2E-10 63.5 8.6 106 79-189 120-230 (276)
237 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.3E-05 2.9E-10 71.2 10.3 111 78-190 189-348 (702)
238 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 8.9E-06 1.9E-10 64.4 7.4 113 75-189 81-219 (283)
239 KOG2187|consensus 98.1 1.5E-05 3.3E-10 66.4 8.2 81 57-139 358-442 (534)
240 PF05958 tRNA_U5-meth_tr: tRNA 98.1 7.7E-06 1.7E-10 66.8 6.3 79 57-138 172-254 (352)
241 PF06962 rRNA_methylase: Putat 98.1 1.5E-05 3.1E-10 55.8 6.2 89 105-197 1-100 (140)
242 TIGR01444 fkbM_fam methyltrans 98.0 8.6E-06 1.9E-10 57.7 4.9 58 82-139 1-59 (143)
243 PF04816 DUF633: Family of unk 98.0 2E-05 4.4E-10 59.3 6.2 96 83-187 1-99 (205)
244 COG1889 NOP1 Fibrillarin-like 97.9 0.00013 2.7E-09 53.9 9.4 108 75-188 72-179 (231)
245 COG0116 Predicted N6-adenine-s 97.9 0.00011 2.4E-09 59.7 10.0 111 75-189 187-344 (381)
246 KOG3115|consensus 97.9 3.9E-05 8.5E-10 56.5 6.7 114 75-189 56-183 (249)
247 PF13578 Methyltransf_24: Meth 97.9 4.2E-06 9.1E-11 56.2 1.6 100 84-190 1-106 (106)
248 PRK11760 putative 23S rRNA C24 97.9 0.00011 2.4E-09 59.0 9.0 88 77-182 209-296 (357)
249 PF13679 Methyltransf_32: Meth 97.8 4E-05 8.8E-10 54.3 5.5 91 78-177 24-122 (141)
250 PF00398 RrnaAD: Ribosomal RNA 97.8 0.00038 8.3E-09 54.6 11.3 93 76-177 27-119 (262)
251 PF04989 CmcI: Cephalosporin h 97.8 8.8E-05 1.9E-09 55.4 6.2 110 77-189 30-147 (206)
252 KOG3201|consensus 97.7 1.9E-05 4E-10 56.1 1.9 113 78-194 28-145 (201)
253 COG0275 Predicted S-adenosylme 97.7 0.00079 1.7E-08 52.9 11.0 82 75-156 19-102 (314)
254 KOG1122|consensus 97.7 0.00037 7.9E-09 57.0 9.1 113 75-189 237-371 (460)
255 COG1189 Predicted rRNA methyla 97.6 0.00044 9.5E-09 52.5 7.8 104 75-189 75-178 (245)
256 COG4262 Predicted spermidine s 97.6 0.00078 1.7E-08 54.2 9.4 104 78-189 288-407 (508)
257 KOG1099|consensus 97.5 7.8E-05 1.7E-09 56.0 3.0 109 80-198 42-172 (294)
258 KOG2198|consensus 97.5 0.00049 1.1E-08 55.4 7.7 115 75-189 151-296 (375)
259 COG5459 Predicted rRNA methyla 97.5 0.0002 4.4E-09 57.2 5.1 117 76-194 110-230 (484)
260 COG2384 Predicted SAM-dependen 97.5 0.001 2.2E-08 49.9 8.5 95 77-180 14-111 (226)
261 COG4627 Uncharacterized protei 97.4 3.9E-05 8.5E-10 54.1 0.6 46 144-189 41-86 (185)
262 PF11599 AviRa: RRNA methyltra 97.4 0.00061 1.3E-08 50.9 6.5 112 78-189 50-214 (246)
263 KOG1596|consensus 97.4 0.0012 2.7E-08 50.1 8.1 105 75-189 152-261 (317)
264 PLN02668 indole-3-acetate carb 97.4 0.0018 3.9E-08 53.3 9.4 112 79-194 63-242 (386)
265 PF01795 Methyltransf_5: MraW 97.4 0.0013 2.7E-08 52.5 8.1 89 67-156 9-99 (310)
266 PF01861 DUF43: Protein of unk 97.2 0.003 6.5E-08 48.3 8.8 110 78-193 43-152 (243)
267 COG4798 Predicted methyltransf 97.2 0.0023 5E-08 47.1 7.8 109 75-191 44-168 (238)
268 PF03492 Methyltransf_7: SAM d 97.2 0.0022 4.7E-08 52.1 8.5 115 76-194 13-188 (334)
269 KOG2793|consensus 97.2 0.0042 9.1E-08 47.9 9.1 113 79-194 86-204 (248)
270 PF03141 Methyltransf_29: Puta 97.2 0.00053 1.2E-08 57.4 4.4 100 77-189 363-467 (506)
271 PF05971 Methyltransf_10: Prot 97.1 0.0012 2.6E-08 52.3 5.9 83 80-164 103-191 (299)
272 KOG2798|consensus 97.1 0.0062 1.3E-07 48.2 9.1 37 149-187 258-294 (369)
273 COG0286 HsdM Type I restrictio 96.9 0.008 1.7E-07 51.5 9.4 110 78-187 185-324 (489)
274 PRK10742 putative methyltransf 96.9 0.0023 5E-08 49.3 5.5 74 78-156 85-170 (250)
275 PF06859 Bin3: Bicoid-interact 96.9 0.00041 8.9E-09 46.2 1.0 39 150-188 1-43 (110)
276 KOG1562|consensus 96.9 0.0044 9.5E-08 48.6 6.7 113 75-189 117-236 (337)
277 COG1867 TRM1 N2,N2-dimethylgua 96.9 0.0038 8.3E-08 50.5 6.5 101 80-189 53-154 (380)
278 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0028 6E-08 52.3 5.2 102 79-189 49-154 (377)
279 COG4301 Uncharacterized conser 96.7 0.018 3.9E-07 44.2 8.9 113 75-189 74-193 (321)
280 TIGR00027 mthyl_TIGR00027 meth 96.6 0.0072 1.6E-07 47.4 6.6 109 80-191 82-199 (260)
281 COG3510 CmcI Cephalosporin hyd 96.6 0.0091 2E-07 43.9 6.5 119 71-196 62-187 (237)
282 COG1064 AdhP Zn-dependent alco 96.6 0.021 4.5E-07 46.2 9.0 100 75-192 162-262 (339)
283 KOG1253|consensus 96.5 0.0018 3.9E-08 54.1 2.5 109 75-189 105-216 (525)
284 COG3315 O-Methyltransferase in 96.5 0.01 2.2E-07 47.4 6.5 107 80-189 93-209 (297)
285 KOG4058|consensus 96.3 0.012 2.7E-07 41.4 5.3 106 77-194 70-177 (199)
286 cd00315 Cyt_C5_DNA_methylase C 96.2 0.017 3.6E-07 45.8 6.5 74 82-163 2-75 (275)
287 PF04072 LCM: Leucine carboxyl 96.2 0.0058 1.3E-07 45.3 3.7 95 80-175 79-182 (183)
288 PF07757 AdoMet_MTase: Predict 96.2 0.024 5.3E-07 37.7 6.1 34 78-113 57-90 (112)
289 PF01555 N6_N4_Mtase: DNA meth 96.2 0.017 3.6E-07 43.9 6.3 45 75-121 187-231 (231)
290 KOG1501|consensus 96.2 0.0082 1.8E-07 49.7 4.6 96 80-179 67-164 (636)
291 KOG2671|consensus 96.1 0.0089 1.9E-07 47.9 4.2 110 75-189 204-354 (421)
292 PRK11524 putative methyltransf 95.9 0.023 5E-07 45.2 5.9 48 75-124 204-251 (284)
293 KOG0822|consensus 95.8 0.034 7.4E-07 47.2 6.7 108 80-192 368-481 (649)
294 PF02636 Methyltransf_28: Puta 95.8 0.03 6.5E-07 43.7 6.0 47 79-125 18-72 (252)
295 PHA01634 hypothetical protein 95.7 0.027 5.9E-07 38.7 4.8 46 78-124 27-72 (156)
296 PF11899 DUF3419: Protein of u 95.7 0.031 6.7E-07 46.2 6.0 65 128-194 275-339 (380)
297 PF05711 TylF: Macrocin-O-meth 95.6 0.071 1.5E-06 41.4 7.2 110 77-192 72-215 (248)
298 KOG2539|consensus 95.5 0.089 1.9E-06 44.1 7.8 114 77-192 198-318 (491)
299 PF03686 UPF0146: Uncharacteri 95.3 0.11 2.4E-06 35.7 6.6 104 70-195 4-108 (127)
300 PF11312 DUF3115: Protein of u 95.2 0.059 1.3E-06 42.9 5.9 110 80-189 87-242 (315)
301 COG1063 Tdh Threonine dehydrog 95.2 0.12 2.7E-06 42.3 7.9 105 78-194 167-274 (350)
302 KOG2920|consensus 95.2 0.015 3.3E-07 45.5 2.4 108 77-189 114-234 (282)
303 cd08283 FDH_like_1 Glutathione 95.0 0.11 2.4E-06 43.1 7.3 107 76-189 181-306 (386)
304 PF00145 DNA_methylase: C-5 cy 95.0 0.06 1.3E-06 43.4 5.6 74 82-164 2-75 (335)
305 PF03269 DUF268: Caenorhabditi 94.9 0.026 5.6E-07 40.4 2.8 107 80-195 2-117 (177)
306 PRK13699 putative methylase; P 94.9 0.091 2E-06 40.3 6.0 47 76-124 160-206 (227)
307 PF04445 SAM_MT: Putative SAM- 94.8 0.053 1.1E-06 41.6 4.5 75 81-160 77-161 (234)
308 PF02254 TrkA_N: TrkA-N domain 94.8 0.19 4.1E-06 33.9 6.9 96 88-194 4-101 (116)
309 KOG0024|consensus 94.8 0.13 2.9E-06 41.2 6.7 110 75-195 165-279 (354)
310 COG3129 Predicted SAM-dependen 94.7 0.1 2.2E-06 39.8 5.6 96 67-163 61-166 (292)
311 KOG2651|consensus 94.5 0.12 2.6E-06 42.3 5.9 47 75-122 149-195 (476)
312 PRK01747 mnmC bifunctional tRN 94.2 0.097 2.1E-06 46.7 5.5 109 78-189 56-206 (662)
313 PRK09424 pntA NAD(P) transhydr 94.1 0.61 1.3E-05 40.2 9.9 104 78-190 163-286 (509)
314 COG1565 Uncharacterized conser 94.1 0.11 2.4E-06 42.2 5.0 47 78-124 76-130 (370)
315 cd08237 ribitol-5-phosphate_DH 93.6 0.83 1.8E-05 37.2 9.5 94 78-190 162-257 (341)
316 PF10354 DUF2431: Domain of un 93.4 0.72 1.6E-05 33.6 7.8 109 86-194 3-130 (166)
317 PRK09880 L-idonate 5-dehydroge 93.3 0.9 2E-05 37.0 9.3 98 78-190 168-267 (343)
318 KOG1227|consensus 93.3 0.095 2.1E-06 41.5 3.3 95 78-184 193-290 (351)
319 PF00107 ADH_zinc_N: Zinc-bind 93.2 0.33 7.2E-06 33.3 5.7 88 89-192 1-92 (130)
320 PF10237 N6-adenineMlase: Prob 93.2 1.6 3.6E-05 31.6 9.3 100 77-189 23-123 (162)
321 PTZ00357 methyltransferase; Pr 93.0 0.7 1.5E-05 41.1 8.2 104 81-184 702-830 (1072)
322 KOG2078|consensus 92.9 0.088 1.9E-06 43.6 2.7 61 75-137 245-308 (495)
323 KOG2352|consensus 92.9 0.19 4E-06 42.5 4.6 112 78-189 294-416 (482)
324 PRK03659 glutathione-regulated 92.9 0.63 1.4E-05 41.2 8.1 103 81-196 401-505 (601)
325 COG0270 Dcm Site-specific DNA 92.8 0.48 1E-05 38.5 6.8 79 80-164 3-81 (328)
326 TIGR00675 dcm DNA-methyltransf 91.9 0.36 7.9E-06 39.0 5.2 72 83-163 1-72 (315)
327 KOG0821|consensus 91.9 0.28 6E-06 37.2 4.0 61 79-140 50-110 (326)
328 COG1255 Uncharacterized protei 91.5 2.8 6.1E-05 28.4 8.0 101 72-194 6-107 (129)
329 TIGR03366 HpnZ_proposed putati 91.5 1.4 3E-05 34.8 8.0 100 78-190 119-219 (280)
330 COG2933 Predicted SAM-dependen 91.5 2.1 4.6E-05 33.6 8.4 37 75-113 207-243 (358)
331 PF05206 TRM13: Methyltransfer 91.4 0.93 2E-05 35.6 6.7 65 77-142 16-87 (259)
332 KOG3924|consensus 91.4 0.43 9.4E-06 39.3 4.9 110 75-188 188-307 (419)
333 PRK11524 putative methyltransf 91.4 0.29 6.3E-06 38.9 4.0 58 129-188 8-79 (284)
334 KOG2918|consensus 91.4 4.3 9.3E-05 32.6 10.2 122 73-194 81-232 (335)
335 TIGR01202 bchC 2-desacetyl-2-h 91.3 1.6 3.5E-05 35.0 8.3 88 79-190 144-232 (308)
336 COG1568 Predicted methyltransf 91.2 0.84 1.8E-05 35.9 6.1 106 78-189 151-260 (354)
337 cd08230 glucose_DH Glucose deh 90.7 3.7 8.1E-05 33.5 10.0 97 78-191 171-271 (355)
338 PRK03562 glutathione-regulated 90.6 1.4 3E-05 39.2 7.8 103 80-194 400-503 (621)
339 PF02153 PDH: Prephenate dehyd 90.4 1.8 3.9E-05 33.9 7.6 75 94-186 2-76 (258)
340 PF11899 DUF3419: Protein of u 90.1 1.7 3.7E-05 36.1 7.4 46 75-122 31-76 (380)
341 cd08254 hydroxyacyl_CoA_DH 6-h 90.0 1.7 3.6E-05 35.0 7.4 98 77-190 163-264 (338)
342 PRK10669 putative cation:proto 89.8 2.1 4.4E-05 37.6 8.2 97 81-190 418-516 (558)
343 PRK10458 DNA cytosine methylas 89.4 6.1 0.00013 33.9 10.4 58 80-139 88-145 (467)
344 TIGR03451 mycoS_dep_FDH mycoth 89.4 2 4.4E-05 35.1 7.5 99 76-190 173-277 (358)
345 KOG1201|consensus 88.7 1.1 2.3E-05 35.7 5.0 79 79-160 37-124 (300)
346 TIGR02822 adh_fam_2 zinc-bindi 88.4 6.9 0.00015 31.7 9.8 93 76-190 162-255 (329)
347 cd08281 liver_ADH_like1 Zinc-d 87.9 3 6.6E-05 34.3 7.6 98 77-190 189-291 (371)
348 TIGR00497 hsdM type I restrict 87.8 11 0.00025 32.6 11.2 44 79-122 217-264 (501)
349 KOG1098|consensus 86.7 1.1 2.3E-05 39.3 4.2 112 75-197 40-166 (780)
350 COG0287 TyrA Prephenate dehydr 86.3 4.9 0.00011 31.9 7.6 89 81-185 4-94 (279)
351 PRK13699 putative methylase; P 86.2 0.94 2E-05 34.8 3.4 55 132-188 4-71 (227)
352 COG0686 Ald Alanine dehydrogen 86.2 2.4 5.2E-05 34.1 5.6 99 79-187 167-266 (371)
353 COG0541 Ffh Signal recognition 85.8 7.4 0.00016 32.8 8.5 138 77-216 97-251 (451)
354 PF05050 Methyltransf_21: Meth 85.7 1.2 2.7E-05 31.7 3.8 38 85-122 1-42 (167)
355 TIGR00561 pntA NAD(P) transhyd 85.4 3.4 7.3E-05 35.8 6.7 101 78-187 162-282 (511)
356 PRK10309 galactitol-1-phosphat 85.4 7.7 0.00017 31.5 8.7 100 77-190 158-261 (347)
357 cd05188 MDR Medium chain reduc 84.6 5.5 0.00012 30.6 7.2 96 78-189 133-232 (271)
358 cd08239 THR_DH_like L-threonin 83.6 5.9 0.00013 32.0 7.3 98 77-190 161-263 (339)
359 PLN02740 Alcohol dehydrogenase 83.4 11 0.00023 31.2 8.8 102 76-190 195-301 (381)
360 PRK07109 short chain dehydroge 82.9 6.4 0.00014 32.0 7.1 77 80-159 8-94 (334)
361 COG1748 LYS9 Saccharopine dehy 82.3 6.7 0.00014 32.7 6.9 72 81-156 2-74 (389)
362 PRK05872 short chain dehydroge 82.2 13 0.00028 29.5 8.5 79 79-160 8-95 (296)
363 PLN02827 Alcohol dehydrogenase 81.7 9.2 0.0002 31.7 7.7 100 76-190 190-296 (378)
364 TIGR02819 fdhA_non_GSH formald 81.0 7.2 0.00016 32.6 6.9 109 77-191 183-301 (393)
365 PRK06701 short chain dehydroge 80.7 8.5 0.00018 30.5 7.0 79 79-159 45-133 (290)
366 PRK08324 short chain dehydroge 80.7 9.5 0.00021 34.4 8.0 78 80-159 422-507 (681)
367 PRK05786 fabG 3-ketoacyl-(acyl 80.6 15 0.00032 27.8 8.1 109 79-189 4-135 (238)
368 PF12692 Methyltransf_17: S-ad 80.4 2.4 5.2E-05 30.1 3.2 54 80-139 29-82 (160)
369 TIGR02825 B4_12hDH leukotriene 79.8 18 0.0004 28.9 8.8 99 76-189 135-237 (325)
370 PRK07806 short chain dehydroge 79.6 12 0.00026 28.6 7.4 109 80-189 6-134 (248)
371 PRK07502 cyclohexadienyl dehyd 79.6 17 0.00037 29.2 8.4 90 81-187 7-98 (307)
372 PRK07904 short chain dehydroge 79.3 13 0.00028 28.7 7.5 79 78-158 6-95 (253)
373 cd08232 idonate-5-DH L-idonate 78.8 12 0.00026 30.1 7.5 95 79-189 165-262 (339)
374 PRK06139 short chain dehydroge 78.7 5.7 0.00012 32.3 5.5 79 79-159 6-93 (330)
375 PRK06128 oxidoreductase; Provi 78.6 9.9 0.00021 30.2 6.8 107 80-189 55-191 (300)
376 COG0569 TrkA K+ transport syst 78.2 9.3 0.0002 29.3 6.2 69 82-156 2-72 (225)
377 PRK07985 oxidoreductase; Provi 78.0 9.2 0.0002 30.4 6.4 109 79-189 48-185 (294)
378 COG5379 BtaA S-adenosylmethion 77.7 5.9 0.00013 31.7 4.9 74 110-189 293-366 (414)
379 TIGR03201 dearomat_had 6-hydro 77.5 12 0.00026 30.5 7.1 46 76-122 163-209 (349)
380 cd08285 NADP_ADH NADP(H)-depen 77.5 15 0.00033 29.8 7.7 98 77-189 164-266 (351)
381 COG5379 BtaA S-adenosylmethion 77.2 7.2 0.00016 31.2 5.3 46 75-122 59-104 (414)
382 PRK09496 trkA potassium transp 77.1 32 0.00069 29.1 9.8 95 82-188 2-98 (453)
383 PRK12939 short chain dehydroge 77.1 13 0.00029 28.2 7.0 78 80-158 7-92 (250)
384 PRK09496 trkA potassium transp 77.0 27 0.00058 29.6 9.3 72 79-156 230-303 (453)
385 cd00401 AdoHcyase S-adenosyl-L 76.6 21 0.00045 30.2 8.3 89 78-190 200-290 (413)
386 KOG2360|consensus 76.5 3.5 7.6E-05 34.1 3.5 65 75-139 209-275 (413)
387 PF02086 MethyltransfD12: D12 75.5 8.5 0.00018 29.8 5.5 40 79-120 20-59 (260)
388 PRK07533 enoyl-(acyl carrier p 75.2 19 0.0004 27.9 7.4 80 79-159 9-97 (258)
389 PRK07417 arogenate dehydrogena 75.1 25 0.00054 27.8 8.1 84 82-185 2-87 (279)
390 PF03435 Saccharop_dh: Sacchar 75.0 12 0.00027 31.0 6.6 71 83-156 1-73 (386)
391 KOG0780|consensus 74.9 22 0.00047 29.8 7.6 137 78-216 99-252 (483)
392 cd08234 threonine_DH_like L-th 74.8 31 0.00068 27.6 8.8 99 76-190 156-258 (334)
393 cd05278 FDH_like Formaldehyde 74.6 17 0.00037 29.3 7.3 98 77-189 165-267 (347)
394 KOG2811|consensus 74.2 5.8 0.00013 32.6 4.2 64 78-141 181-247 (420)
395 PRK06940 short chain dehydroge 73.9 18 0.00039 28.3 7.1 77 82-160 4-86 (275)
396 KOG1209|consensus 73.6 24 0.00051 27.1 7.0 76 79-159 6-90 (289)
397 PRK08507 prephenate dehydrogen 73.5 28 0.0006 27.4 8.0 85 82-186 2-88 (275)
398 PLN03154 putative allyl alcoho 73.5 17 0.00036 29.7 7.0 97 77-189 156-258 (348)
399 PRK12491 pyrroline-5-carboxyla 73.4 20 0.00044 28.3 7.2 89 82-189 4-96 (272)
400 cd08294 leukotriene_B4_DH_like 73.4 28 0.0006 27.8 8.2 96 77-189 141-241 (329)
401 PRK12743 oxidoreductase; Provi 73.3 21 0.00045 27.5 7.2 78 81-159 3-89 (256)
402 PF01210 NAD_Gly3P_dh_N: NAD-d 72.6 16 0.00035 26.1 6.0 93 82-189 1-103 (157)
403 PRK06249 2-dehydropantoate 2-r 72.5 29 0.00063 27.9 8.0 42 149-195 71-112 (313)
404 cd08261 Zn_ADH7 Alcohol dehydr 72.2 20 0.00043 28.8 7.1 100 76-189 156-258 (337)
405 KOG0023|consensus 72.1 11 0.00024 30.6 5.2 103 77-193 179-283 (360)
406 cd08300 alcohol_DH_class_III c 72.1 32 0.0007 28.2 8.4 99 76-190 183-289 (368)
407 TIGR02818 adh_III_F_hyde S-(hy 72.1 17 0.00036 29.9 6.7 100 76-190 182-288 (368)
408 PRK05866 short chain dehydroge 72.0 7.9 0.00017 30.8 4.6 79 80-159 40-126 (293)
409 PRK06079 enoyl-(acyl carrier p 71.6 44 0.00095 25.7 8.8 78 79-159 6-92 (252)
410 PRK09291 short chain dehydroge 71.5 12 0.00026 28.7 5.5 77 81-158 3-81 (257)
411 cd05285 sorbitol_DH Sorbitol d 71.2 47 0.001 26.8 9.1 100 76-189 159-265 (343)
412 PF06016 Reovirus_L2: Reovirus 71.1 28 0.00061 33.5 8.3 95 79-183 822-919 (1289)
413 PRK08415 enoyl-(acyl carrier p 70.6 34 0.00073 26.9 7.9 79 79-160 4-93 (274)
414 KOG2782|consensus 70.3 5.1 0.00011 30.6 2.9 49 75-123 39-87 (303)
415 cd08265 Zn_ADH3 Alcohol dehydr 70.2 39 0.00085 27.9 8.5 101 77-189 201-307 (384)
416 cd08231 MDR_TM0436_like Hypoth 70.2 55 0.0012 26.6 9.3 97 79-189 177-280 (361)
417 COG0863 DNA modification methy 69.8 9.4 0.0002 30.3 4.6 48 75-124 218-265 (302)
418 COG0604 Qor NADPH:quinone redu 69.2 24 0.00052 28.7 6.9 104 76-192 139-244 (326)
419 cd08236 sugar_DH NAD(P)-depend 68.8 34 0.00074 27.5 7.8 99 77-189 157-258 (343)
420 cd08301 alcohol_DH_plants Plan 68.8 32 0.0007 28.2 7.7 102 76-190 184-290 (369)
421 cd08277 liver_alcohol_DH_like 68.8 41 0.00089 27.5 8.3 100 76-190 181-287 (365)
422 cd08255 2-desacetyl-2-hydroxye 68.7 52 0.0011 25.4 8.9 95 76-189 94-190 (277)
423 PRK05650 short chain dehydroge 68.5 10 0.00022 29.5 4.5 77 82-159 2-86 (270)
424 PRK12937 short chain dehydroge 67.3 42 0.00092 25.3 7.7 108 79-189 4-139 (245)
425 PRK00050 16S rRNA m(4)C1402 me 67.1 7.2 0.00016 31.3 3.4 30 167-196 214-243 (296)
426 PRK06182 short chain dehydroge 67.1 54 0.0012 25.4 8.4 74 80-160 3-84 (273)
427 PRK07984 enoyl-(acyl carrier p 67.1 39 0.00083 26.3 7.5 78 79-159 5-93 (262)
428 PLN02586 probable cinnamyl alc 67.0 45 0.00097 27.4 8.2 95 78-190 182-279 (360)
429 PRK05867 short chain dehydroge 66.2 21 0.00045 27.4 5.8 79 79-159 8-95 (253)
430 PRK10537 voltage-gated potassi 66.1 36 0.00077 28.6 7.4 99 81-194 241-341 (393)
431 KOG1269|consensus 66.1 29 0.00062 28.8 6.7 112 78-194 179-318 (364)
432 cd08293 PTGR2 Prostaglandin re 66.0 41 0.00089 27.1 7.8 93 81-189 156-254 (345)
433 TIGR00518 alaDH alanine dehydr 65.9 18 0.00038 30.1 5.5 102 79-191 166-269 (370)
434 PLN02178 cinnamyl-alcohol dehy 65.9 54 0.0012 27.2 8.5 95 78-190 177-274 (375)
435 cd08233 butanediol_DH_like (2R 65.7 36 0.00077 27.6 7.3 98 77-190 170-273 (351)
436 PRK06484 short chain dehydroge 65.6 47 0.001 28.7 8.4 76 79-159 268-352 (520)
437 PRK08594 enoyl-(acyl carrier p 65.5 31 0.00067 26.7 6.7 78 79-158 6-95 (257)
438 PLN02819 lysine-ketoglutarate 65.4 21 0.00046 33.9 6.4 73 79-156 568-654 (1042)
439 PRK07677 short chain dehydroge 65.3 23 0.00049 27.2 5.9 76 81-158 2-86 (252)
440 cd08295 double_bond_reductase_ 65.1 34 0.00075 27.6 7.1 98 76-189 148-251 (338)
441 PRK06124 gluconate 5-dehydroge 64.8 25 0.00054 26.9 6.0 80 79-159 10-97 (256)
442 PRK07890 short chain dehydroge 64.7 25 0.00054 26.9 6.0 78 79-159 4-91 (258)
443 PRK05562 precorrin-2 dehydroge 64.3 54 0.0012 25.2 7.5 69 77-157 22-92 (223)
444 KOG1252|consensus 64.3 11 0.00024 30.7 3.9 45 71-115 203-251 (362)
445 PF02558 ApbA: Ketopantoate re 64.1 38 0.00083 23.6 6.4 46 148-198 65-110 (151)
446 PF02719 Polysacc_synt_2: Poly 64.0 13 0.00028 29.8 4.2 77 87-164 4-91 (293)
447 cd05281 TDH Threonine dehydrog 64.0 50 0.0011 26.6 7.9 99 78-189 162-262 (341)
448 PRK12744 short chain dehydroge 63.9 38 0.00082 26.0 6.9 80 79-159 7-98 (257)
449 COG4017 Uncharacterized protei 63.8 7.7 0.00017 29.0 2.7 72 77-165 42-114 (254)
450 KOG2666|consensus 63.7 9.4 0.0002 30.9 3.3 38 81-118 2-41 (481)
451 PRK06172 short chain dehydroge 63.3 27 0.00059 26.7 6.0 79 79-159 6-93 (253)
452 PRK06500 short chain dehydroge 63.2 63 0.0014 24.4 8.8 74 80-159 6-89 (249)
453 PRK07097 gluconate 5-dehydroge 62.7 27 0.00058 27.0 5.9 80 79-160 9-97 (265)
454 PRK07063 short chain dehydroge 62.7 28 0.00061 26.7 6.0 79 79-159 6-95 (260)
455 COG1179 Dinucleotide-utilizing 62.7 47 0.001 26.0 6.8 38 79-116 29-67 (263)
456 PRK06505 enoyl-(acyl carrier p 62.6 51 0.0011 25.7 7.5 79 79-160 6-95 (271)
457 PF05575 V_cholerae_RfbT: Vibr 62.4 16 0.00035 26.6 4.1 50 75-124 75-124 (286)
458 KOG0022|consensus 62.3 19 0.00042 29.2 4.8 100 77-189 190-294 (375)
459 PRK09072 short chain dehydroge 62.0 37 0.0008 26.2 6.6 78 79-159 4-89 (263)
460 PF01795 Methyltransf_5: MraW 61.9 7.6 0.00016 31.3 2.6 28 167-194 219-246 (310)
461 cd08278 benzyl_alcohol_DH Benz 61.9 39 0.00083 27.7 6.9 99 77-189 184-285 (365)
462 PRK08217 fabG 3-ketoacyl-(acyl 61.8 31 0.00067 26.2 6.0 79 79-158 4-90 (253)
463 PRK06603 enoyl-(acyl carrier p 61.6 65 0.0014 24.9 7.9 78 79-159 7-95 (260)
464 PRK07035 short chain dehydroge 61.6 29 0.00063 26.5 5.8 79 79-159 7-94 (252)
465 COG1062 AdhC Zn-dependent alco 61.5 22 0.00049 29.1 5.1 102 75-191 181-287 (366)
466 PRK07889 enoyl-(acyl carrier p 60.8 75 0.0016 24.5 8.3 78 79-159 6-94 (256)
467 PRK05876 short chain dehydroge 60.7 31 0.00067 27.0 5.9 78 79-159 5-92 (275)
468 PRK08862 short chain dehydroge 60.4 31 0.00068 26.2 5.8 78 79-158 4-91 (227)
469 PRK07478 short chain dehydroge 60.4 35 0.00075 26.1 6.1 78 80-159 6-92 (254)
470 cd08245 CAD Cinnamyl alcohol d 60.2 86 0.0019 25.0 9.8 96 77-189 160-256 (330)
471 PRK07454 short chain dehydroge 60.2 37 0.0008 25.7 6.2 79 80-159 6-92 (241)
472 PRK05396 tdh L-threonine 3-deh 60.2 53 0.0011 26.5 7.4 97 79-190 163-264 (341)
473 PRK10867 signal recognition pa 60.0 62 0.0013 27.6 7.8 44 149-192 182-225 (433)
474 PRK06484 short chain dehydroge 59.4 71 0.0015 27.6 8.4 76 79-159 4-88 (520)
475 PRK07814 short chain dehydroge 59.3 37 0.0008 26.2 6.1 79 79-158 9-95 (263)
476 PLN02702 L-idonate 5-dehydroge 59.3 97 0.0021 25.3 9.0 101 77-189 179-285 (364)
477 cd08286 FDH_like_ADH2 formalde 59.0 63 0.0014 26.0 7.7 102 77-189 164-266 (345)
478 PRK07024 short chain dehydroge 58.8 53 0.0011 25.2 6.9 78 81-160 3-88 (257)
479 PRK06522 2-dehydropantoate 2-r 58.4 90 0.002 24.6 10.1 100 82-193 2-104 (304)
480 PRK06113 7-alpha-hydroxysteroi 57.6 38 0.00081 26.0 5.9 79 79-159 10-97 (255)
481 cd08238 sorbose_phosphate_red 57.4 69 0.0015 26.8 7.8 102 77-188 173-287 (410)
482 PRK08293 3-hydroxybutyryl-CoA 57.3 67 0.0015 25.4 7.3 40 81-122 4-45 (287)
483 PRK06077 fabG 3-ketoacyl-(acyl 57.2 79 0.0017 23.9 7.6 109 80-189 6-140 (252)
484 PRK05708 2-dehydropantoate 2-r 57.2 1E+02 0.0022 24.8 10.1 104 81-196 3-111 (305)
485 PF03514 GRAS: GRAS domain fam 57.1 88 0.0019 26.1 8.2 110 78-187 109-242 (374)
486 PRK11064 wecC UDP-N-acetyl-D-m 56.7 1.2E+02 0.0026 25.6 9.2 38 81-120 4-43 (415)
487 PRK08339 short chain dehydroge 56.6 43 0.00093 26.0 6.1 78 79-158 7-93 (263)
488 PLN02253 xanthoxin dehydrogena 56.4 32 0.0007 26.8 5.4 78 80-159 18-103 (280)
489 TIGR00692 tdh L-threonine 3-de 56.3 75 0.0016 25.6 7.6 99 77-190 159-262 (340)
490 PRK08159 enoyl-(acyl carrier p 56.3 86 0.0019 24.5 7.8 79 80-159 10-97 (272)
491 PRK06194 hypothetical protein; 56.2 39 0.00085 26.4 5.9 80 80-160 6-93 (287)
492 PF07279 DUF1442: Protein of u 55.9 90 0.002 23.8 8.8 105 75-189 37-148 (218)
493 PLN02514 cinnamyl-alcohol dehy 55.8 88 0.0019 25.6 8.0 97 78-190 179-276 (357)
494 PRK05884 short chain dehydroge 55.7 84 0.0018 23.6 7.4 69 82-157 2-76 (223)
495 PRK06035 3-hydroxyacyl-CoA deh 55.6 82 0.0018 25.0 7.6 39 81-121 4-44 (291)
496 PRK08818 prephenate dehydrogen 55.3 42 0.0009 28.0 5.9 74 80-184 4-83 (370)
497 PRK07370 enoyl-(acyl carrier p 55.2 53 0.0011 25.4 6.3 80 79-159 5-96 (258)
498 PF14740 DUF4471: Domain of un 54.8 8.8 0.00019 30.7 1.9 33 149-189 221-254 (289)
499 PRK07523 gluconate 5-dehydroge 54.7 45 0.00097 25.5 5.9 80 79-159 9-96 (255)
500 PRK08267 short chain dehydroge 54.5 58 0.0012 25.0 6.5 73 82-159 3-86 (260)
No 1
>KOG2361|consensus
Probab=100.00 E-value=1.4e-35 Score=218.93 Aligned_cols=204 Identities=47% Similarity=0.781 Sum_probs=183.7
Q ss_pred CCChHHHH----HHHhhhccccchhhHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh-hhcCCCcEEEEecCC
Q psy1107 15 ILTDDLNK----NLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV-NQDVGEGVLLEVGCG 89 (218)
Q Consensus 15 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vLDiGcG 89 (218)
+|+.++.. .++.+....+..++...|.....++|+.+|..+...|+.+++|+.+++++++ ....+..+|||+|||
T Consensus 2 ~wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCG 81 (264)
T KOG2361|consen 2 EWSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCG 81 (264)
T ss_pred CcCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccC
Confidence 46666554 3455667788889999999999999999999999999999999999999997 223334489999999
Q ss_pred CchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch
Q psy1107 90 VGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK 167 (218)
Q Consensus 90 ~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~ 167 (218)
.|.....+++..++ ..++++|.|+.+++..+.+......+++...+|++.+.+..+...+++|+|++.+++..++|+.
T Consensus 82 vGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek 161 (264)
T KOG2361|consen 82 VGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK 161 (264)
T ss_pred CCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH
Confidence 99999999988776 8999999999999999999887778899999999998876778889999999999999999999
Q ss_pred HHHHHHHHHHhccCCeEEEEEecCCCchhhhccCCCCccCccceeccCCCC
Q psy1107 168 FSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218 (218)
Q Consensus 168 ~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
...+++.+.++|||||.|++.||+.+|.++++|++++-++.++|+|+||||
T Consensus 162 ~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~ 212 (264)
T KOG2361|consen 162 MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTR 212 (264)
T ss_pred HHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCce
Confidence 999999999999999999999999999999999999999999999999996
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=2.1e-21 Score=147.20 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=103.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||||.++..+++..+.++++++|+|+.|++.++++....+ .++.|+++|+.+ +++++++||+|.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~----LPf~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN----LPFPDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh----CCCCCCccCEEEee
Confidence 7899999999999999999998777899999999999999999977544 459999999988 78999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
+.+++++ ++..+|++++|+|||||.+++.++.....+.
T Consensus 127 fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 127 FGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred ehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 9999995 8999999999999999999999988776543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.8e-20 Score=143.43 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=89.2
Q ss_pred CCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCC
Q psy1107 61 KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVT 138 (218)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~ 138 (218)
.+..|.. .+... ....++.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.++++....+ .++.++++|+.
T Consensus 31 ~~~~wr~-~~~~~-~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~ 108 (233)
T PF01209_consen 31 QDRRWRR-KLIKL-LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE 108 (233)
T ss_dssp ------S-HHHHH-HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT
T ss_pred HHHHHHH-HHHhc-cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH
Confidence 3445544 22232 34567789999999999999999876 566799999999999999998865443 58999999998
Q ss_pred CcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 139 EDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 139 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+ .++++++||+|++.+.+++++ ++.+.++++.++|||||.+++.++......
T Consensus 109 ~----lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 109 D----LPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp B------S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred H----hcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 8 678889999999999999995 788999999999999999999998877654
No 4
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=2.3e-20 Score=139.43 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=113.7
Q ss_pred ccccchhhHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh---h---hcCCCcEEEEecCCCchhHHHHhhcCC
Q psy1107 29 SRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV---N---QDVGEGVLLEVGCGVGNFIFPLLSWSK 102 (218)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~vLDiGcG~G~~~~~~~~~~~ 102 (218)
...++..+-.+|..-...+|+...... ..+.++.....++ . ..-++.+|||+|||-|.++..+|+.+
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~------~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G- 81 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFK------PLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG- 81 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCcee------eeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-
Confidence 345666777778888888887432111 1111111111111 1 11478999999999999999999988
Q ss_pred ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 103 ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 103 ~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
++|+|+|+++.+++.|+.++...+.++.+....+.+ .....++||+|+|..|++|++ ++..+++.+.+++|||
T Consensus 82 -a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----l~~~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 82 -ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----LASAGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKPG 154 (243)
T ss_pred -CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----HHhcCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCCC
Confidence 699999999999999999988777667777766655 223336999999999999996 7888999999999999
Q ss_pred eEEEEEecCCCch
Q psy1107 183 GIILFRDYGLHDM 195 (218)
Q Consensus 183 G~li~~~~~~~~~ 195 (218)
|.++++...+...
T Consensus 155 G~lf~STinrt~k 167 (243)
T COG2227 155 GILFLSTINRTLK 167 (243)
T ss_pred cEEEEeccccCHH
Confidence 9999988665443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=7.3e-18 Score=131.67 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=95.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCc----ccCCCceEEeccCCCcccccCCCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPL----YDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
...++.+|||+|||+|.++..+++. ++..+++|+|+|+.+++.|+++.. ....++.+++.|+.+ .++++++
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~----lp~~~~s 145 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD----LPFDDCY 145 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc----CCCCCCC
Confidence 4456789999999999999888876 455699999999999999987642 112478999999876 5677889
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
||+|++.+++++++ ++..++.++.++|||||.+++.++....
T Consensus 146 fD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 146 FDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99999999999985 7889999999999999999999987654
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=1.9e-18 Score=118.09 Aligned_cols=106 Identities=19% Similarity=0.317 Sum_probs=87.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccC-CCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDV-TEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~~~~~D~i~ 155 (218)
|+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++.. ....++.+++.|+ .. ... ...||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~-~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD----PDF-LEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG----TTT-SSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC----ccc-CCCCCEEE
Confidence 5689999999999999999997677899999999999999999872 3347999999999 22 222 23699999
Q ss_pred ech-hhcCCCc-chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIF-VLSAIHP-NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~-~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.. .++++.+ ++...+++.+.+.|+|||++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988 5554432 567889999999999999999864
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=2.9e-18 Score=123.61 Aligned_cols=109 Identities=23% Similarity=0.364 Sum_probs=92.2
Q ss_pred CCCcEEEEecCCCchhHHHHh-hcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL-SWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~-~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+.+++..+ .++.|.+.|+.+.. ..++ +.||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~--~~~~-~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP--QELE-EKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC--GCSS-TTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc--cccC-CCeeEEE
Confidence 457899999999999999999 56777899999999999999999765444 47999999998822 1133 6899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+..++++++ +...+++.+.++|+++|.+++.++.
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999884 7789999999999999999998866
No 8
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.77 E-value=1.1e-17 Score=126.45 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=103.0
Q ss_pred hhHHHHHHHhhhccCCCcccchHHHHHHhhhc--CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC
Q psy1107 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQD--VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 46 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
++|+..|......|.. .-..+.+...+... .++.+|||+|||.|..+..++.++ ..|+|+|+|+.+++.+....
T Consensus 1 ~~Wd~ry~~~~~~w~~--~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~ 76 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQ--SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAEN 76 (213)
T ss_pred ChHHHHHhcCCCCCcc--CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHc
Confidence 3799999776555421 22233343433222 466799999999999999999877 58999999999999864321
Q ss_pred cc-------------cCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 124 LY-------------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 124 ~~-------------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. ...++.+.++|+.+.. ....+.||.|+...+++|++++....++..+.++|+|||.+++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 77 GLTPTVTQQGEFTRYRAGNIEIFCGDFFALT---AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcceeccccceeeecCceEEEEccCCCCC---cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 11 1346889999997732 1113479999999999999999999999999999999998777655
Q ss_pred C
Q psy1107 191 G 191 (218)
Q Consensus 191 ~ 191 (218)
.
T Consensus 154 ~ 154 (213)
T TIGR03840 154 D 154 (213)
T ss_pred E
Confidence 4
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=1e-17 Score=130.97 Aligned_cols=147 Identities=16% Similarity=0.237 Sum_probs=109.8
Q ss_pred hHHHHhhhhHhhHHHHHHHhhhccCCCcccchHHHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 36 VAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 36 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
+..+|.......|+..+...--. ... .+....++ ....++.+|||+|||+|..+..++... ..+|+++|+|+
T Consensus 12 ~~~~y~~~~~~~~e~~~g~~~~~---~gg--~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~ 85 (263)
T PTZ00098 12 ENNQYSDEGIKAYEFIFGEDYIS---SGG--IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICE 85 (263)
T ss_pred hccccccccchhHHHHhCCCCCC---CCc--hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCH
Confidence 45556666666777655432110 100 11222232 345678899999999999998887654 46999999999
Q ss_pred HHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 114 RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+++.++.+... ..++.+...|+.. .++++++||+|++..++.|++.++...+++++.++|||||.|++.++...
T Consensus 86 ~~~~~a~~~~~~-~~~i~~~~~D~~~----~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 86 KMVNIAKLRNSD-KNKIEFEANDILK----KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred HHHHHHHHHcCc-CCceEEEECCccc----CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999987553 3578999999876 46677799999999888888766889999999999999999999987543
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=4.4e-18 Score=112.58 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=81.1
Q ss_pred EEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCC
Q psy1107 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI 163 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~ 163 (218)
||+|||+|..+..+++. +..+++++|+++.+++.++++... ..+.+...|+.+ .++++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~----l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAED----LPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTS----SSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHh----Cccccccccccccccceeec
Confidence 89999999999999988 457999999999999999987653 345588899887 58888899999999999999
Q ss_pred CcchHHHHHHHHHHhccCCeEEEE
Q psy1107 164 HPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 164 ~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+++..+++++.++|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6899999999999999999986
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=1.1e-17 Score=133.41 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=89.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||||||+|.++..++..+ .+|+|+|+++.+++.|+.+....+ .++.+++.|+.+ .++..++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~----l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK----LADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH----hhhccCCCCEEEE
Confidence 56799999999999999888754 699999999999999997754332 478899988765 3445568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ +...+++.+.++|||||.+++....+.
T Consensus 205 ~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 205 LEVIEHVA--NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred hhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999995 778999999999999999999876544
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=2.2e-17 Score=133.62 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|..+..++... ..+|+|+|+|+.+++.++++....+ .++.+.+.|+.+ .++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~----~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN----QPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc----CCCCCCCccEEE
Confidence 567899999999999999998865 4699999999999999988754433 478999999877 466778999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+..+++|++ +...++.++.++|||||.|++.++..
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999995 67899999999999999999987643
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=1.6e-17 Score=124.39 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++....+.++.+...|+.. .+++ ++||+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~I~~~ 101 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA----AALN-EDYDFIFST 101 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh----cccc-CCCCEEEEe
Confidence 356799999999999999999865 599999999999999987655444346677777644 2233 479999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+++++++++...+++.+.++|+|||++++..+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999999877888999999999999999766543
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=5.4e-17 Score=121.77 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=86.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.++++....+ .++.+.+.|+.+ ..++ ++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN----LTFD-GEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh----CCcC-CCcCEEEE
Confidence 456899999999999999999875 599999999999999988755433 457888888765 2333 47999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..+++++++++...++..+.++|+|||.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999988778899999999999999996553
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.73 E-value=7.9e-18 Score=112.98 Aligned_cols=97 Identities=21% Similarity=0.401 Sum_probs=80.5
Q ss_pred EEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec-h
Q psy1107 83 LLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI-F 158 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~-~ 158 (218)
|||+|||+|..+..++... |..+++++|+|+.+++.++++....+.++++++.|+.+ .+...++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~----l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD----LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC----HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH----CcccCCCeeEEEEcCC
Confidence 7999999999999998774 44699999999999999999876655689999999977 34456699999995 4
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGG 183 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG 183 (218)
+++|++++....+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999998899999999999999998
No 16
>KOG1540|consensus
Probab=99.73 E-value=2.4e-16 Score=118.24 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=99.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc------cEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI------CYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~------~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~ 144 (218)
..+.+..++||++||+|..+..+.+..+. .+|+++|+|+.+++.+++++...+ ..+.++++|+.+ +
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~----L 171 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED----L 171 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc----C
Confidence 45566799999999999999999877443 689999999999999999874433 348899999988 7
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
++++.+||+.+..+.+.+++ ++.+.+++++|+|||||+|++.++....+
T Consensus 172 pFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 79999999999999999996 88999999999999999999999887663
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=9.9e-17 Score=124.51 Aligned_cols=108 Identities=17% Similarity=0.321 Sum_probs=90.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..++.+|||+|||+|..+..++.. .|..+++++|+|+.+++.|+++....+ .++.++++|+.+ .++ ..+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~D 127 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENAS 127 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh----CCC--CCCC
Confidence 356789999999999999888773 577899999999999999998865433 478999998865 222 3589
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|++..+++++++++...+++++.+.|+|||.|++.+.
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999999877788999999999999999999873
No 18
>KOG4300|consensus
Probab=99.72 E-value=1.8e-17 Score=120.45 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=110.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCce-EEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMN-VFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~-~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
......+||+|||+|..-..+- ..|..+|+++|+++.+.+.+.+.+... +.++. |+..+..+ ...++++++|+|
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~---l~~l~d~s~DtV 149 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN---LPQLADGSYDTV 149 (252)
T ss_pred ccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc---CcccccCCeeeE
Confidence 3445678999999998875553 346679999999999999999886554 35666 88888777 234788999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhhccCCCCccCccceeccCCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQDKTR 218 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
++..+++.. +++.+.+++..++|+|||.+++.+++......+.+.-.+...+.|..-.|||+
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ 211 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV 211 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE
Confidence 999999977 68999999999999999999999998888777766666677777788888874
No 19
>KOG1270|consensus
Probab=99.71 E-value=3.6e-17 Score=123.22 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=105.7
Q ss_pred ccccchhhHHHHhhhhHhhHHHHHHHhh-hccCCCc-ccchHHHHHHh-hhcCC-----CcEEEEecCCCchhHHHHhhc
Q psy1107 29 SRLVSKHVAEEIEQNKKKYWDLFYKRNE-TKFFKDR-NWTVNEFHEFV-NQDVG-----EGVLLEVGCGVGNFIFPLLSW 100 (218)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~vLDiGcG~G~~~~~~~~~ 100 (218)
...++..+..++.......|+.--.... ...-..| .|+...+..-. .+.++ +++|||+|||.|.++..+++.
T Consensus 31 ~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 31 TTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred eecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh
Confidence 3445556667777777788885322211 1110111 11222222221 11222 478999999999999999998
Q ss_pred CCccEEEEEeCCHHHHHHHHhCCcccC---C----CceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHH
Q psy1107 101 SKICYIHACDISPRAVNFFKLNPLYDA---S----KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVK 173 (218)
Q Consensus 101 ~~~~~v~~~D~s~~~~~~~~~~~~~~~---~----~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~ 173 (218)
+ +.|+|+|++..+++.|+......+ . ++.+.+.++.. . .+.||.|+|..+++|+ .++..+++
T Consensus 111 g--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~------~-~~~fDaVvcsevleHV--~dp~~~l~ 179 (282)
T KOG1270|consen 111 G--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG------L-TGKFDAVVCSEVLEHV--KDPQEFLN 179 (282)
T ss_pred C--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh------c-ccccceeeeHHHHHHH--hCHHHHHH
Confidence 8 599999999999999999855444 2 24455555544 1 2259999999999999 68999999
Q ss_pred HHHHhccCCeEEEEEecCCC
Q psy1107 174 NLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 174 ~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+.++|||||.+++.+..+.
T Consensus 180 ~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHHHHhCCCCceEeeehhhh
Confidence 99999999999999885443
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.71 E-value=1.2e-16 Score=117.62 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=87.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.++||+|||.|..+..+++.+ ..|+++|.|+.+++.+++.+...+-.++..+.|+.+ ..++ +.||+|++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~----~~~~-~~yD~I~s 100 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND----FDFP-EEYDFIVS 100 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC----BS-T-TTEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh----cccc-CCcCEEEE
Confidence 3467899999999999999999987 589999999999999888766555678899999877 3343 47999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..++++++++....++..+.+.++|||++++..+
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9999999999999999999999999999888543
No 21
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.71 E-value=4.1e-16 Score=118.36 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=99.9
Q ss_pred HhhHHHHHHHhhhccCCCcccchHHHHHHhh--hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVN--QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 45 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
.++|+..|......|.. .-..+.+...+. ...++.+|||+|||.|..+..++..+ .+|+|+|+|+.+++.+...
T Consensus 3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~ 78 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAE 78 (218)
T ss_pred HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHH
Confidence 35799999776544421 122333333321 23456799999999999999999876 5999999999999986432
Q ss_pred Cc-------------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 123 PL-------------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 123 ~~-------------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.. ....++.+.++|+.+.. ....+.||.|+...++++++++....++..+.++|+|||.+++
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~---~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 79 NGLTPQTRQSGEFEHYQAGEITIYCGDFFALT---AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCCCccccccccccccccCceEEEECcccCCC---cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 11 11356888999987732 1122479999999999999999999999999999999986555
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=1e-16 Score=125.14 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=90.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.|+++....+ .++.++++|+.+. ...+.++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l---~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI---AQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH---hhhcCCCCCEEE
Confidence 456799999999999999999875 589999999999999998765443 4688999888662 234456899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+..+++|++ ++..++..+.++|||||.+++..+...
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 999999994 677899999999999999998766544
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.70 E-value=1.9e-16 Score=121.82 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=92.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++.+....+ .++.+++.|+.. .+++.++||+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~ 117 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME----LPFDDNSFDY 117 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc----CCCCCCCccE
Confidence 3456789999999999999999876 456799999999999999998754333 578889998876 3455678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
|++..++++++ +...++.++.++|+|||.+++.+....
T Consensus 118 V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 118 VTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99999988885 678899999999999999999876543
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=1.8e-16 Score=123.73 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=86.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...|..+++|+|+|+.+++.+++. ++.+.++|+.+ . .+.++||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~----~-~~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRD----W-KPKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhh----C-CCCCCceEEEE
Confidence 3567899999999999999999887778999999999999999763 57788888764 1 23468999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++|++ +...++.++.++|||||.+++...
T Consensus 96 ~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 96 NAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999995 678899999999999999998653
No 25
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.70 E-value=2.3e-16 Score=123.26 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=100.2
Q ss_pred hhHHHHH---HHhhhccCCCcccchH----HHHHHhhh--cCCCcEEEEecCCCch----hHHHHhhcCC-----ccEEE
Q psy1107 46 KYWDLFY---KRNETKFFKDRNWTVN----EFHEFVNQ--DVGEGVLLEVGCGVGN----FIFPLLSWSK-----ICYIH 107 (218)
Q Consensus 46 ~~w~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~vLDiGcG~G~----~~~~~~~~~~-----~~~v~ 107 (218)
+.|+... ..+.+.|+++...... .++.++.. ..++.+|+|+|||+|. ++..+++..+ +.+|+
T Consensus 57 ~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~ 136 (264)
T smart00138 57 EELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKIL 136 (264)
T ss_pred HHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 4455433 3345677776532221 12222211 2356799999999997 3444444433 46999
Q ss_pred EEeCCHHHHHHHHhCCcc----------------------------cCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 108 ACDISPRAVNFFKLNPLY----------------------------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 108 ~~D~s~~~~~~~~~~~~~----------------------------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
|+|+|+.+++.|++..-. ...++.|.+.|+.+ .+.+.++||+|+|..+
T Consensus 137 g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~----~~~~~~~fD~I~crnv 212 (264)
T smart00138 137 ATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA----ESPPLGDFDLIFCRNV 212 (264)
T ss_pred EEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC----CCCccCCCCEEEechh
Confidence 999999999999986310 01368888898877 3345678999999999
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
++|+++.....+++.+.+.|+|||+|++....
T Consensus 213 l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 213 LIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 99998778889999999999999999997633
No 26
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.70 E-value=1e-17 Score=112.06 Aligned_cols=98 Identities=26% Similarity=0.441 Sum_probs=64.4
Q ss_pred EEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhhcC
Q psy1107 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~ 162 (218)
||+|||+|.++..+++..|..+++++|+|+.+++.++++..... .+......+..+ .......++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLD--LFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCC--hhhcccccccceehhhhhHhh
Confidence 79999999999999998888899999999999988887755433 233344333332 112222258999999999999
Q ss_pred CCcchHHHHHHHHHHhccCCeEE
Q psy1107 163 IHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 163 ~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
+ .++..+++.+.++|+|||.|
T Consensus 79 l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred h--hhHHHHHHHHHHHcCCCCCC
Confidence 9 58889999999999999976
No 27
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.70 E-value=4.6e-16 Score=113.45 Aligned_cols=137 Identities=21% Similarity=0.263 Sum_probs=98.1
Q ss_pred hhHHHHHHHhhhccCCCcccchH-HHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh
Q psy1107 46 KYWDLFYKRNETKFFKDRNWTVN-EFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL 121 (218)
Q Consensus 46 ~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~ 121 (218)
+.|+. +....++|.....|..+ ....++ ....+..++||+|||.|.++..++..+ -+++++|+|+.+++.|++
T Consensus 7 ~~l~~-~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 7 QLLNR-ELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARE 83 (201)
T ss_dssp HHHHH-HHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHH
T ss_pred HHHHH-HhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHH
Confidence 34443 33445566444455544 222222 344556899999999999999999987 389999999999999999
Q ss_pred CCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 122 NPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 122 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+.... .++.+.+.|+.. ..|.++||+|++..+++++.+ ++...++..+...|.|||.|++.++.
T Consensus 84 Rl~~~-~~V~~~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 84 RLAGL-PHVEWIQADVPE-----FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HTTT--SSEEEEES-TTT--------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hcCCC-CCeEEEECcCCC-----CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 87644 589999998855 456789999999999999975 67889999999999999999998864
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=2.1e-16 Score=122.21 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=91.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+|||+|||+|..+..+++. .|.++++++|+|+.+++.|+++....+ .++.+++.|+.+ .+++ ++|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~--~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH----VEIK--NASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh----CCCC--CCCE
Confidence 46779999999999999999875 367899999999999999998755432 468899998876 2232 5899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..+++++++++...+++++.++|+|||.+++.+..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 99999999998777889999999999999999998754
No 29
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.69 E-value=6.3e-16 Score=116.34 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=89.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++...+..+++|+|+|+.+++.|+.+.. ++.+.+.|+.+ ++++++||+|
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-----~~~~~sfD~V 109 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-----PFKDNFFDLV 109 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-----CCCCCCEEEE
Confidence 34557789999999999999999887666799999999999999987642 46677777654 4566799999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
++..+++|+++++...+++++.+++ ++++++.++....
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999999998888899999999987 5688887764433
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=4.7e-16 Score=131.64 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=93.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+.+......++.|.+.|+.. .++++++||+|++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~I~s 338 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK----KTYPDNSFDVIYS 338 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc----CCCCCCCEEEEEE
Confidence 4567899999999999998888764 4699999999999999988765444578999999876 4556678999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ ++..++.++.++|||||.+++.++...
T Consensus 339 ~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 339 RDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred CCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 99999995 788999999999999999999886543
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=3.3e-16 Score=124.16 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=87.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++...+.++.+...|+... .+ .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEcc
Confidence 45699999999999999998865 5999999999999999887655445788888887652 22 45899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++++++++....+++.+.++|+|||++++..
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999987788899999999999999976643
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=7e-16 Score=114.21 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
+++.+|||+|||+|..+..++...+..+|+++|+++.+++.++++....+ .++++.++|+.+. .. .++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~----~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF----GQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC----CC-CCCccEEEE
Confidence 45789999999999999999887777899999999999999998866554 4589999998762 22 558999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.. + .++..+++.+.++|+|||.+++.....
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 64 2 356789999999999999999987443
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.66 E-value=2.6e-15 Score=117.01 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+.. ...+++.|+.. .++++++||+|++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~----~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA----ADHYLAGDIES----LPLATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC----CCCEEEcCccc----CcCCCCcEEEEEECc
Confidence 56799999999999998887654 599999999999999987643 35678888866 456677899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++++++ ++..++.++.++|+|||.+++..++.....
T Consensus 112 ~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~ 147 (251)
T PRK10258 112 AVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLP 147 (251)
T ss_pred hhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchH
Confidence 998874 788999999999999999999987765433
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=1.3e-15 Score=117.63 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=92.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++..+++++|+++.+++.++.... .++.++.+|+.+ .+++.++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEK----LPLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhh----CCCCCCceeEEEEh
Confidence 34579999999999999999998887789999999999999988754 378889998876 34566789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+++++. +...++..+.++|+|||.+++..+....
T Consensus 106 ~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 106 LALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 9999884 6788999999999999999998765444
No 35
>PRK06922 hypothetical protein; Provisional
Probab=99.65 E-value=9e-16 Score=130.36 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=92.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|..+..++...|+.+++|+|+|+.+++.++++....+.++.++++|+.+. ...+++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence 3467899999999999999998888888999999999999999987554445678888887651 12366778999999
Q ss_pred chhhcCCC-----------cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIH-----------PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+++++. +++...+++.+.++|||||.+++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88887642 24678999999999999999999874
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=1.2e-15 Score=110.79 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=80.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||.|.++..++..+. +++++|+++.+++. .+......+... ...+.++||+|+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK---------RNVVFDNFDAQD----PPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH---------TTSEEEEEECHT----HHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh---------hhhhhhhhhhhh----hhccccchhhHhh
Confidence 56788999999999999999977764 99999999999888 122222222212 2345569999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++|++ ++..+++.+.++|||||++++.+....
T Consensus 85 ~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 85 NDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999996 799999999999999999999987654
No 37
>PRK05785 hypothetical protein; Provisional
Probab=99.65 E-value=6.1e-15 Score=112.82 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|..+..++... ..+++|+|+|+.+++.++... .++++|+.+ .++++++||+|++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~----lp~~d~sfD~v~~~ 117 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEA----LPFRDKSFDVVMSS 117 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------ceEEechhh----CCCCCCCEEEEEec
Confidence 457899999999999999998875 359999999999999998641 346677766 57788899999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+++++++ ++...++++.++|||. +.+.+++.
T Consensus 118 ~~l~~~~--d~~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 118 FALHASD--NIEKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred ChhhccC--CHHHHHHHHHHHhcCc--eEEEEeCC
Confidence 9999884 7889999999999994 33444443
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=2e-15 Score=118.05 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=86.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...+..+++++|+|+.+++.++++. .++.+...|+... .+..+||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCCCCccEEEE
Confidence 35678999999999999999998877789999999999999998764 3578888887641 23358999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..++++++ +...++.++.++|+|||.+++..
T Consensus 100 ~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLP--DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhhCC--CHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999985 67889999999999999998854
No 39
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=9.8e-16 Score=122.92 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+|||||||+|.++..++..++. .|+|+|+|+.++..++.... ....++.+..+|+.+ .+. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~----lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ----LPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH----CCC-cCCcCEEE
Confidence 35689999999999999999988764 79999999998875443211 113478999998876 334 56899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|..+++|.. ++..++.++++.|+|||.+++.+.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999984 788899999999999999998654
No 40
>KOG1271|consensus
Probab=99.65 E-value=8.8e-16 Score=109.57 Aligned_cols=144 Identities=22% Similarity=0.361 Sum_probs=102.6
Q ss_pred hhhHhhHHHHHHHhhhccCCCc----ccchHHH--------HHHh--hhcCCC-cEEEEecCCCchhHHHHhhcCCccEE
Q psy1107 42 QNKKKYWDLFYKRNETKFFKDR----NWTVNEF--------HEFV--NQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYI 106 (218)
Q Consensus 42 ~~~~~~w~~~~~~~~~~~~~~~----~~~~~~~--------~~~~--~~~~~~-~~vLDiGcG~G~~~~~~~~~~~~~~v 106 (218)
.+.++||+..|.....+|.... -|..... ...+ ....+. .+|||+|||.|.++..+++.+-....
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L 94 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKL 94 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCc
Confidence 4678899999999888775221 2222111 1111 112333 39999999999999999988644469
Q ss_pred EEEeCCHHHHHHHHhCCcccC-C-CceEEeccCCCcccccCCCCCcccEEEechhhcCCC--c----chHHHHHHHHHHh
Q psy1107 107 HACDISPRAVNFFKLNPLYDA-S-KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH--P----NKFSTVVKNLFIM 178 (218)
Q Consensus 107 ~~~D~s~~~~~~~~~~~~~~~-~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~----~~~~~~l~~~~~~ 178 (218)
+|+|+|+.+++.|+..++..+ . .|.|.+.|++++ .+..+.||+|+--..+..++ | ..+...+..+.++
T Consensus 95 ~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l 170 (227)
T KOG1271|consen 95 TGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL 170 (227)
T ss_pred cccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc
Confidence 999999999999998876655 3 499999999984 34455788887755554443 2 1235677888999
Q ss_pred ccCCeEEEEEe
Q psy1107 179 LKSGGIILFRD 189 (218)
Q Consensus 179 Lk~gG~li~~~ 189 (218)
|+|||+|++..
T Consensus 171 l~~~gifvItS 181 (227)
T KOG1271|consen 171 LSPGGIFVITS 181 (227)
T ss_pred cCCCcEEEEEe
Confidence 99999999854
No 41
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.65 E-value=5.4e-15 Score=111.89 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred hhHhhHHHHHHHhhhccCCCcccchHHHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 43 NKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 43 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
...++|+..|..+...|.... ....+.+.+ ....++.+||.+|||.|..+..++..+ .+|+|+|+|+.+++.+.
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~--pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQES--PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFF 82 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCC--CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHH
Confidence 345689999988877774332 233333332 122356799999999999999999987 48999999999999986
Q ss_pred hCC-------------cccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 121 LNP-------------LYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 121 ~~~-------------~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+.. ...+.++.+.++|+.+... ..-..+.||+|+-...+++++|+...++.+.+.++|+|||.+++
T Consensus 83 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~-~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 83 SQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK-IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred HHcCCCcceecccccceeccCceEEEEccCcCCCc-cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 521 1223578999999987321 01122579999999999999999999999999999999999988
Q ss_pred EecC
Q psy1107 188 RDYG 191 (218)
Q Consensus 188 ~~~~ 191 (218)
..+.
T Consensus 162 l~~~ 165 (226)
T PRK13256 162 LVME 165 (226)
T ss_pred EEEe
Confidence 7653
No 42
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.64 E-value=5.6e-15 Score=111.94 Aligned_cols=136 Identities=23% Similarity=0.323 Sum_probs=100.5
Q ss_pred HhhHHHHHHHhhhccCCCcccchHHHHHHhh--hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh-
Q psy1107 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVN--QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL- 121 (218)
Q Consensus 45 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~- 121 (218)
.++|+..|..+..+| +..-..+.+..++. ...++.+||.+|||.|..+..+++.+ .+|+|+|+|+.+++.+.+
T Consensus 3 ~~~W~~~w~~~~~~w--~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 3 PEFWEERWQEGQTPW--DQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp HHHHHHHHHTT--TT----TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--CCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHH
Confidence 468999998887777 33334445555542 25667899999999999999999887 599999999999999832
Q ss_pred CCc------------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 122 NPL------------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 122 ~~~------------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+.. ....++.+.++|+.+. ..-..++||+|+-...++.++|+......+.+.++|+|||.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l---~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFEL---PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTG---GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccC---ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 211 0124678999999873 22222579999999999999999999999999999999999443
No 43
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=1.6e-15 Score=111.18 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=86.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..+|||+|||+|..+..++..+|..+++++|+++.+++.++.+...++. ++.++..|+.+ ..+.++||+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-----~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-----ALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-----TCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-----cccccceeEEEEc
Confidence 67899999999999999999999888899999999999999998776653 38888988865 3446799999998
Q ss_pred hhhcCCCc---chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHP---NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-.++.-.. +....++..+.++|+|||.|++..
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 76554432 246788999999999999997654
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=2e-15 Score=118.97 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=90.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++.. ++..+++++|+++.+++.++++....+ .++.+...|+.+ .++++++||+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~----l~~~~~~fD~ 149 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA----LPVADNSVDV 149 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh----CCCCCCceeE
Confidence 4567889999999999988776654 455689999999999999998754433 478888888866 3556678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|++..++++.+ +...+++++.++|||||.|++.++.
T Consensus 150 Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 150 IISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999988775 6678999999999999999997753
No 45
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=1.9e-15 Score=115.82 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=88.1
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..+++.++..+++++|+|+.+++.++.+....+ .++.+...|+... +++ ++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~~-~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PFP-DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CCC-CCCCEeehHH
Confidence 37999999999999999988777899999999999999998765432 5788999988652 233 4899999999
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++|++ ++..+++.+.++|+|||.+++.++.
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999995 6889999999999999999998754
No 46
>PRK08317 hypothetical protein; Provisional
Probab=99.64 E-value=3.6e-15 Score=115.08 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=92.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|.++..++... +..+++++|+++.+++.++.+......++.+...|+.. .+++.++||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~ 90 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG----LPFPDGSFDA 90 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc----CCCCCCCceE
Confidence 345677899999999999999998875 66799999999999999988743344678899988876 3455678999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|++..++++++ ++..+++.+.++|+|||.+++.+.
T Consensus 91 v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 91 VRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999999985 788899999999999999998764
No 47
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.63 E-value=3.3e-15 Score=118.78 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=82.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC--CcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN--PLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~--~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..++. .|+|+|+|+.++..+... ......++.+..+++.+ .+.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~----lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ----LHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH----CCCC-CCcCEE
Confidence 345789999999999999888887764 899999999988764332 11122467777777755 2222 379999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++..+++|.+ ++..++.++++.|+|||.|++.+.
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999999994 778899999999999999998754
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=3.6e-15 Score=116.72 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=86.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||-|.++..+++.+ +++|+|+.+|+...+.+++.+...+ .++.+...|..+. +. +||
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------~~-~fD 129 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------PG-KFD 129 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-S
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc------CC-CCC
Confidence 556789999999999999999999985 4799999999999999998766544 5688888887652 22 899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.|++..+++|+.+.+...+++++.++|+|||.+++-.....+
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999999998889999999999999999999986544333
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.62 E-value=5.1e-15 Score=118.66 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|..+..+++..+..+++++|+|+.+++.++++.. ..++.+..+|+.+ .+++.++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~----lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAED----LPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHh----CCCCCCceeEEEEc
Confidence 45679999999999999888876655799999999999999998753 2467888888876 45667789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++++++ +...+++++.++|+|||.+++.+
T Consensus 186 ~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred ChhhhCC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999885 56789999999999999998865
No 50
>PRK06202 hypothetical protein; Provisional
Probab=99.62 E-value=5.8e-15 Score=113.68 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..++.+|||+|||+|.++..++.. ++..+++|+|+|+.+++.++++... .++.+...+... .+.++++||
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~----l~~~~~~fD 131 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDE----LVAEGERFD 131 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEeccc----ccccCCCcc
Confidence 356789999999999998887653 4556999999999999999887543 245565555433 223456899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..+++|+++.+...++.++.++++ |.+++.++.+..
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~ 171 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSR 171 (232)
T ss_pred EEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCH
Confidence 9999999999986566789999999998 667777777654
No 51
>PLN03075 nicotianamine synthase; Provisional
Probab=99.62 E-value=1.7e-14 Score=112.87 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCcEEEEecCCCchhHHHHh--hcCCccEEEEEeCCHHHHHHHHhCCcc-c--CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLL--SWSKICYIHACDISPRAVNFFKLNPLY-D--ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~--~~~~~~~v~~~D~s~~~~~~~~~~~~~-~--~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
++.+|+|||||.|.++..+. ...|+.+++++|+++.+++.|++.+.. . ..++.|..+|+.+. ....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcCE
Confidence 77899999999886644433 457888999999999999999998743 2 25799999998762 112357999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++. +++++...+...+++.+.+.|+|||.|++..
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999 8888866789999999999999999999976
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=6e-15 Score=109.00 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|..+..++...+..+++++|.|+.+++.++++....+ .++.++++|+.+. . ..++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEeh
Confidence 4789999999999999999877777899999999999999887755444 4689999998662 1 24589999986
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
. ++ +...+++.+.++|+|||.+++..
T Consensus 117 ~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 117 A-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 5 22 45567888899999999999875
No 53
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.61 E-value=3.6e-15 Score=109.38 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=88.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..-+..+|.|+|||+|..+..++++.|.+.++|+|.|+.|++.|+.+. .+++|...|+.+ ..+....|+++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~-----w~p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRT-----WKPEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhh-----cCCCCccchhh
Confidence 345678999999999999999999999999999999999999998763 578899998865 34455799999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++.+++++| +-..++.++...|.|||.|.+-
T Consensus 98 aNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 98 ANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 999999997 5567889999999999988873
No 54
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.60 E-value=1.1e-14 Score=116.58 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=91.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..+|||||||+|.++..+++.+|..+++++|. +.+++.++++....+ .++.++.+|+.+. .++ .+|+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v 219 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAV 219 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEE
Confidence 45678999999999999999999999899999997 789999887765443 5789999998762 333 36999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++..++|+++++....+++++++.|+|||.+++.++..
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999998876667889999999999999999998643
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.59 E-value=2.3e-14 Score=110.69 Aligned_cols=110 Identities=17% Similarity=0.291 Sum_probs=91.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|..+..++..++ ..+++++|+++.+++.++++.... ..++.+..+|+.+ ...+.++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA----LPFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc----CCCCCCCccEE
Confidence 3568999999999999999988875 579999999999999999886542 2568888898876 23445689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++..++++++ +...++..+.++|+|||.+++.++...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 9999888884 678899999999999999999876443
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=5e-15 Score=111.54 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccC-CCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDV-TEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~-~~~~~~~~~~~~~~D~i~~ 156 (218)
+..+|||+|||+|..+..++...|..+++++|+|+.+++.++++....+ .++.++++|+ .. +...++.++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--LLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH--HHHHcCccccceEEE
Confidence 5789999999999999999888777799999999999999998765433 5789999988 43 112255678999998
Q ss_pred chhhcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.. ......+++.+.++|+|||.|++..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 65432221 0124678999999999999999875
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.1e-14 Score=112.69 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=96.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.+..++.+|||||||-|.+++.+|+.+ +.+|+|+++|+.+.+.+++++...+ .++++...|..+. .+.||
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------~e~fD 139 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------EEPFD 139 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------ccccc
Confidence 667899999999999999999999986 5799999999999999999765544 4788888877552 22499
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
-|++..+++|+..+....++..+.++|+|||.+++-+....+
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999999999999888999999999999999999997766555
No 58
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.59 E-value=2.8e-14 Score=109.06 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=91.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|..+..++...+. .+++++|+++.+++.++.+.. ...++.+..+|+.+ .+++.++||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~----~~~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEA----LPFEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhc----CCCCCCcEEEEEE
Confidence 36789999999999999999888765 689999999999999988765 34578899998876 2345568999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
..++++++ +...+++.+.++|+|||.+++.++..
T Consensus 113 ~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 113 AFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 98888874 68899999999999999999987643
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.58 E-value=2.2e-14 Score=114.39 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=100.6
Q ss_pred HhhhhHhhHHHHHHHhhhccCCC---cccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHH
Q psy1107 40 IEQNKKKYWDLFYKRNETKFFKD---RNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRA 115 (218)
Q Consensus 40 ~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~ 115 (218)
|.....+.|+..+.. ..|+.. ...+......++....++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+
T Consensus 23 yd~~G~~lf~~i~~~--peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m 100 (301)
T TIGR03438 23 YDARGSELFEQICEL--PEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA 100 (301)
T ss_pred ccchHHHHHHHHHCC--CccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence 344555667765432 222211 1223334444444456778999999999999999988764 4699999999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCc-ccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTED-DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~-~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.+.++..... .++.++++|+.+. .+......+...++++...++++++++...+++++++.|+|||.|++..
T Consensus 101 L~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 101 LKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999988754322 3567788998763 1211111112334555567888988889999999999999999998854
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=4.6e-14 Score=97.93 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++...|..+++++|+++.+++.++.+....+ .++.++..|+... ......+||+|++
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~ 94 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFI 94 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEE
Confidence 45679999999999999999988777899999999999999988755433 4677777776531 1112248999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.... .....+++.+.+.|+|||.|++.-
T Consensus 95 ~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSG-----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcc-----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 5432 345689999999999999998854
No 61
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=2.4e-14 Score=113.11 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.|+.++...+ .++.+++.|+.+ .++..+||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEEE
Confidence 4579999999999999999988887899999999999999999876544 468899998754 234457999998
Q ss_pred chhh------cCCC------c-----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVL------SAIH------P-----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l------~~~~------~-----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+-.. .+++ | +....++..+.++|+|||.+++-.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5211 1111 0 124677888999999999988744
No 62
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.56 E-value=4.5e-14 Score=107.82 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=85.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+ .+++|+|+|+.++..++++..... .++.+.++|+... . ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----C---GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----C---CCcCEE
Confidence 3567899999999999999998764 599999999999999998765433 3788999887652 2 589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++..+++|+++.+...++..+.+++++++++.+.
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999987777888999999999887766654
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.56 E-value=3.7e-14 Score=116.30 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=89.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||||||+|.++..++... .++|+++|+|+.+++.++++... ..+.+...|... + .++||.|+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~------l-~~~fD~Iv 233 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRD------L-NGQFDRIV 233 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhh------c-CCCCCEEE
Confidence 34677899999999999999998764 36999999999999999987642 346777777643 1 35899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+..+++|++..+...+++.+.++|||||.+++..+....
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~ 272 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK 272 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 999999997667789999999999999999998765443
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=5.4e-14 Score=119.12 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=90.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.... ...++.+++.|+.... .+++.++||+|++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~--~~~~~~~fD~I~~~ 110 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPD--LNISDGSVDLIFSN 110 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccc--cCCCCCCEEEEehh
Confidence 356799999999999999998875 489999999999988765422 2357889999986532 34666789999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++|+++++...++.++.++|||||++++.+..
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999998667889999999999999999997743
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=4.1e-14 Score=114.99 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=84.3
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..+|||+|||+|.++..++..+|..+++++|.|+.+++.++.+...+. .++.+...|... .++..+||+|+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-----~~~~~~fDlIl 303 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVEPFRFNAVL 303 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-----cCCCCCEEEEE
Confidence 469999999999999999999998999999999999999998765332 256777777654 23345899999
Q ss_pred echhhcCC---CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAI---HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~---~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+-.++.. +.....+++..+.+.|+|||.|++..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 97665532 23345688999999999999999975
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=9.4e-14 Score=102.76 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=85.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.++.+|||+|||+|.++..++..++ +++++|+++.+++.++.+....+.++.+..+|+.+. . .++||+|+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~-~~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG-----V-RGKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-----c-CCcccEEEEC
Confidence 3557899999999999999998775 899999999999999988665555678888887551 1 2489999998
Q ss_pred hhhcCCCcc-------------------hHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPN-------------------KFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
..+++.++. ....+++.+.++|+|||.+++......
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 766555321 145688999999999999999875554
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=2.8e-14 Score=106.86 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=84.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..++||||||+|.++..++..+|...++|+|++..+++.++.+....+ .++.++++|+.+.. ...++.+++|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEEE
Confidence 4569999999999999999999998999999999999999987755433 58999999986521 112445589999986
Q ss_pred hhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+...+.... ....++..+.++|||||.|++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 543322110 11468999999999999999865
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.53 E-value=1.6e-13 Score=105.67 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=86.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+.++.+...|+... .....++||+|++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~Ii~ 120 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL---AAEHPGQFDVVTC 120 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh---hhhcCCCccEEEE
Confidence 4567899999999999998888764 5899999999999999876543334567777766541 1123468999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..++++.+ +...+++.+.++|+|||.+++....
T Consensus 121 ~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 121 MEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99999885 6778999999999999999987654
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.53 E-value=3e-14 Score=116.11 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++...+..+++++|+|+.+++.++++....+.++.+.++|+.+... + ..++||+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~-~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--P-SEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--c-cCCCccEEEE
Confidence 345679999999999999999887777899999999999999999876555678999999865321 1 1347999999
Q ss_pred chhhcCC------------Cc-----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAI------------HP-----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~------------~~-----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+-..... .| +....+++.+.+.|+|||.+++..
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5432100 00 124477778889999999887744
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=6.1e-14 Score=111.82 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=81.2
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..++...|..+++++|+|+.+++.|++++...+ .++.++++|+.+ .++.++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCccEEEECC
Confidence 68999999999999999988888899999999999999999876544 468999998754 22345799999852
Q ss_pred hh-------------cCCCc----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VL-------------SAIHP----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l-------------~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .+-|. +....++..+.++|+|||.+++-.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 11110 124578899999999999998844
No 71
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.53 E-value=6.4e-14 Score=110.92 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=81.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+|||+|.++..++...+..+++++|+|+.+++.++.+....+ .++.++++|+.+ .++..+||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEECC
Confidence 69999999999999999988887899999999999999999866444 348899998865 23334799999852
Q ss_pred -------------hhcCCCc----------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 -------------VLSAIHP----------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 -------------~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+..|-|. +....++..+.++|+|||.+++..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1122111 145678899999999999888754
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=110.63 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=84.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...+|||+|||+|.++..++..+|..+++++|+|+.+++.++.+....+....+...|+.. .. .++||+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~-----~~-~~~fDlIvsNP 269 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS-----DI-KGRFDMIISNP 269 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc-----cc-CCCccEEEECC
Confidence 3458999999999999999998888899999999999999998766554455666677644 12 45899999988
Q ss_pred hhcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|... .+....++..+.+.|+|||.|+++.
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 777532 2456789999999999999998865
No 73
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.52 E-value=2.1e-13 Score=103.08 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=81.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~~ 151 (218)
..++.+|||+|||+|.++..+++.. +...|+++|+++- .. ..++.++++|+.+... ...+..++|
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DP----IVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cC----CCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 4667899999999999999888774 4469999999881 11 1368899999987421 112456789
Q ss_pred cEEEechhhcCCCcc--h-------HHHHHHHHHHhccCCeEEEEEecCCCchhhh
Q psy1107 152 DIATLIFVLSAIHPN--K-------FSTVVKNLFIMLKSGGIILFRDYGLHDMAQM 198 (218)
Q Consensus 152 D~i~~~~~l~~~~~~--~-------~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~ 198 (218)
|+|++....++.... + ...++..+.++|+|||.|++..+...+....
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~ 174 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEY 174 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHH
Confidence 999997654443210 1 2468899999999999999988877664433
No 74
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=1.1e-13 Score=103.13 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=81.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..++..+++++|+++.+++.++++....+ .++.++..|... .++ ++||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~~-~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----ELP-GKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hcC-cCCCEE
Confidence 3457789999999999999999988887899999999999999988755433 467888777632 222 479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..... ....++..+.+.|+|||.+++..
T Consensus 102 ~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 9865432 34578899999999999998865
No 75
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=1.8e-13 Score=105.19 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=80.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+ ..++++|+|+.+++.++.+....+ .++.+..+|+.. ..++||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEE
Confidence 3467899999999999999998776 479999999999999998754433 368888888432 23579999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
++..+++|++......++..+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999988876777888888888776555443
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=1.6e-13 Score=103.66 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=78.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.++++....+ .++.++.+|+.+. .....+||+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~----~~~~~~fD~ 145 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG----LEKHAPFDA 145 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC----CccCCCccE
Confidence 4567899999999999998888754 34599999999999999988765443 3588999988652 122458999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++..++.+++ ..+.+.|+|||.|++..
T Consensus 146 Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 99987766553 35778999999998854
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.51 E-value=1.1e-13 Score=107.66 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=81.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++...+...++++|+++.+++.++.+....+ .++.+.++|+.+ .++.++||+|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEEC
Confidence 4569999999999999999988777899999999999999998865444 468888988765 2345689999985
Q ss_pred hhhcC------CCcc------------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSA------IHPN------------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~------~~~~------------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..... +.++ ....++..+.++|+|||.+++..
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33221 1111 12467889999999999998865
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1.8e-13 Score=108.07 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=82.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|..+..++...+..+++++|+++.+++.++.+.. ....++.+..+|+.. +++.++||+|+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-----~~~~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-----PLPGGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-----cCCCCceeEEE
Confidence 346779999999999999999988877899999999999999998865 223578999998854 22346899999
Q ss_pred echhhc------CCCc------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLS------AIHP------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~------~~~~------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++-... .+.+ +....++..+.++|+|||.+++..
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 853211 0111 124577888889999999998854
No 79
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=1.6e-13 Score=108.14 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCc---cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKI---CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~---~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
+..+|||+|||+|.++..++...+. ..++|+|+|+.+++.|.++. .++.+.+.|+.+ .++++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~----lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHR----LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeeccc----CCCcCCceeEEE
Confidence 4578999999999999998876542 37999999999999998653 468888888876 467778999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+... + ..+.++.++|||||+|++...+...
T Consensus 157 ~~~~----~-----~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 157 RIYA----P-----CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred EecC----C-----CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 7542 1 2357789999999999998765443
No 80
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.50 E-value=6.7e-14 Score=112.16 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-------c----CCCceEEeccCCCcccccCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-------D----ASKMNVFPCDVTEDDILNQVP 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-------~----~~~i~~~~~d~~~~~~~~~~~ 147 (218)
++.+|||+|||.|..+..+..... ..++|+|++..+++.|+.+... . .-...|+..|.....+...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 788999999999999999988765 4999999999999999988611 0 123456777777655444444
Q ss_pred C--CcccEEEechhhcCCC--cchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 148 H--NSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 148 ~--~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
. ..||+|.|.+.+|++- .+..+.++..+...|+|||+|+.....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 4 4899999999999873 356678999999999999999987643
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.49 E-value=4.8e-13 Score=102.03 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++...+...|+++|+++.+++.+.+++... .++.++.+|+........++ .+||+|+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 445788999999999999999988755568999999999988776654432 57888889886521111233 3699998
Q ss_pred echhhcCCC-cchHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+. ++ +.....++..+.++|||||.+++
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 53 22 22334568999999999999999
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.49 E-value=1.8e-13 Score=110.95 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=87.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+..+||||||+|.++..+|...|...++|+|+++.+++.+..++...+ .++.++++|+... ...++++++|.|++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~s~D~I~l 198 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSNSVEKIFV 198 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCCceeEEEE
Confidence 34569999999999999999999999999999999999999988865544 6899999998652 23567789999998
Q ss_pred chhhcCCCcc----hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN----KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+...+.... ....++..+.++|+|||.+.+..
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6543332111 12478999999999999999854
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=2.8e-13 Score=102.79 Aligned_cols=103 Identities=19% Similarity=0.087 Sum_probs=80.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +..+++++|+++.+++.++++....+ .++.+.++|.... ..+.++||
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~fD 147 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAPYD 147 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCCcC
Confidence 345678899999999999998888763 44699999999999999998866544 5789999998652 23346899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++......+ ...+.+.|+|||.+++..
T Consensus 148 ~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 99987655443 235667899999988864
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.48 E-value=1.5e-13 Score=94.51 Aligned_cols=107 Identities=21% Similarity=0.394 Sum_probs=84.2
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+....+ .++.+++.|+.+.. ..++.++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEEC
Confidence 4689999999999999999888 5799999999999999999877654 57899999986632 34667899999997
Q ss_pred hhhcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-...... ......+++.+.++|+|||.+++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6554321 1235688999999999999998864
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.48 E-value=2.8e-13 Score=105.20 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=80.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.-.+.+|||||||+|..+..++..++. .|+|+|.+..............+. .+.+....+.+ .+. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~----Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED----LPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----ccc-cCCcCEE
Confidence 346889999999999999999999874 899999988776554433222222 23333233333 222 4689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+|++|++|. .++...+.+++..|+|||.|++-...
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999999999 48889999999999999999986543
No 86
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=5.5e-13 Score=101.49 Aligned_cols=102 Identities=19% Similarity=0.098 Sum_probs=79.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+ .++.++..|.... .....+||+
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~----~~~~~~fD~ 149 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG----WEPLAPYDR 149 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC----CcccCCCCE
Confidence 45678899999999999999988774 34579999999999999998866544 5789999988652 122348999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.....++ ...+.+.|+|||++++.-
T Consensus 150 Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 9987554433 345678899999998864
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=103.27 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=89.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.......+|||+|||+|..+..++.+.+.++++++|+++++.+.|+++...++ .++++++.|+.+.. ......+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hcccccccC
Confidence 33445789999999999999999998777899999999999999999976644 68999999997732 234444799
Q ss_pred EEEechhhcCCC----------------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIH----------------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~----------------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+|+-...... ..+...+++.+.++|||||.+.++.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 999954433221 1225688899999999999999876
No 88
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.46 E-value=4.3e-13 Score=103.90 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=88.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+..+|||||+|.|.++..+++.+|+.+++.+|. |.+++.+++ ..++.+..+|+.+ ++|. +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~-----~~P~--~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD-----PLPV--ADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT-----CCSS--ESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHh-----hhcc--cccee
Confidence 345667999999999999999999999999999998 888888887 4689999999974 3444 99999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCC--eEEEEEecCC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSG--GIILFRDYGL 192 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~g--G~li~~~~~~ 192 (218)
+..++|++++++...+|+++++.|+|| |.|++.++-.
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999999999999999999999999 9999988553
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=1.1e-12 Score=104.63 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc------CCCceEEeccCCCcccccCCCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD------ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++.... ..++.|...|+.. + .++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l-~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------L-SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------c-CCCcC
Confidence 56799999999999999999865 58999999999999999885432 2356777777643 1 35899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+|+|..+++|++.+....++..+.++ .++|+++
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 99999999998765566677777654 5665543
No 90
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=101.35 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=86.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
...+|||+|||.|.+++.+++.+|..+++.+|.|..+++.++.+...+.. +..+...|... +... +||+|+++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-----~v~~-kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-----PVEG-KFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-----cccc-cccEEEeC
Confidence 34499999999999999999999999999999999999999999876553 33555666544 3444 89999998
Q ss_pred hhhcCCC---cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIH---PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
-.+|.-- +.-..+++..+.+.|++||.|.++..+..+
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 7776332 122348899999999999999998764333
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=9.1e-13 Score=100.84 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=80.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.++.+....+.++.++..|+.. .++.++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-----AVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-----hccCCCeeEEEE
Confidence 35668999999999999999887643 499999999999999988765544467777887754 234568999998
Q ss_pred chhhcCCCc-------------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHP-------------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~-------------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+......+. .....++..+.++|+|||.+++..
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 643221110 124567888999999999999854
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.43 E-value=1.1e-12 Score=104.08 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=80.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.++++....+ ..+.+...+. .....++||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~------~~~~~~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL------EQPIEGKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc------ccccCCCceEE
Confidence 34678999999999999988887654 489999999999999998865443 2344444432 12234589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+++... .....++..+.++|+|||.++++........
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~ 266 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGILETQAQ 266 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHH
Confidence 986432 3456788999999999999999876554433
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.1e-13 Score=103.53 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=78.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCC--ceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK--MNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.+++..++.+.. +++|+|+++.+++.++.|+..++-. ++....+.. .....++||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-----~~~~~~~~DvI 233 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-----EVPENGPFDVI 233 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-----hhcccCcccEE
Confidence 458899999999999999999998864 8999999999999999997765532 112111111 12223589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++- +. +-...+...+.+.|+|||+++++..-
T Consensus 234 VANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 234 VANI-LA----EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred Eehh-hH----HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 9853 22 34568889999999999999997733
No 94
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.42 E-value=1.6e-12 Score=99.57 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=85.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.+.+|||+|||+|.++..++..+ .+++++|+++.+++.++.+....+. ++.+...|+.+.. ....++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEEeh
Confidence 47799999999999999888765 4799999999999999887554433 5788777765521 1113589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+++++. +...++..+.++|+|||.+++....
T Consensus 120 ~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EVLEHVP--DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999884 7788999999999999999987654
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=2.2e-12 Score=104.30 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=86.4
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++..+ ..++|+|+++.++..++.++...+ .++.+...|+.+ .+++.++||+|
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~----l~~~~~~~D~I 252 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK----LPLSSESVDAI 252 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc----CCcccCCCCEE
Confidence 45677899999999999998876654 589999999999999998866544 457888999877 34445689999
Q ss_pred EechhhcC---C----CcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSA---I----HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~---~----~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++...... . ..+....++..+.++|+|||.+++......+..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 99533211 1 112357899999999999999988764443433
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.3e-12 Score=102.75 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=79.1
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+|||+|||+|..++.++..+|.++|+++|+|+.+++.|+.|+..++ .++.++..|+.. +... +||+|+++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~~~-~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PLRG-KFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----ccCC-ceeEEEeCCCC
Confidence 7999999999999999999998999999999999999999987766 555566666543 3333 89999995421
Q ss_pred c--C---CCc------------------chHHHHHHHHHHhccCCeEEEEEec
Q psy1107 161 S--A---IHP------------------NKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 161 ~--~---~~~------------------~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
- . ..+ +....++..+.+.|+|||.+++-..
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0 101 1245788889999999998888553
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=2.1e-12 Score=97.03 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=81.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++.. .+..+++++|+++.+++.++++....+ .++.++..|..+. .....+.||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcCCCCC
Confidence 3457789999999999999998765 455699999999999999988765443 5788888887541 111234799
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.|++... ......+++.+.+.|+|||.+++.
T Consensus 114 ~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGGG-----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECCC-----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 9997431 135678999999999999999873
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.40 E-value=2.9e-12 Score=97.33 Aligned_cols=102 Identities=17% Similarity=0.022 Sum_probs=77.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||+|||+|..+..++... .+++++|+++.+++.++++....+ .++.+...|..+. ..+.++||+
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~ 147 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----WPAYAPFDR 147 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----CCcCCCcCE
Confidence 345677899999999999998777765 389999999999999998765444 4688888887541 112358999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|++...+.++ ...+.+.|+|||.+++.-.
T Consensus 148 I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 9987654433 3456789999999988664
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=2.3e-12 Score=96.70 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=81.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++...+..+++++|+++.+++.++++....+ .++.++..|+.+. ...+. ..+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~~-~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC--LAQLA-PAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH--HhhCC-CCCCEE
Confidence 3456789999999999999999877676799999999999999998765443 4688888887541 11111 235666
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+... . .....+++.+.++|+|||.+++......
T Consensus 114 ~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 114 CIEG----G--RPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred EEEC----C--cCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 5421 1 3567889999999999999999875543
No 100
>KOG1975|consensus
Probab=99.40 E-value=7.8e-13 Score=102.58 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=103.4
Q ss_pred chhhHHHHhhhhHhhHHHHHHHhhhccC---CCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEE
Q psy1107 33 SKHVAEEIEQNKKKYWDLFYKRNETKFF---KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHAC 109 (218)
Q Consensus 33 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~ 109 (218)
+...+.+|+.......... ..++.+ .-++|+...+... ...+...++++|||.|..++.+-.++.+ .++|+
T Consensus 73 ~~~Va~HYN~~~e~g~e~R---q~S~Ii~lRnfNNwIKs~LI~~--y~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igi 146 (389)
T KOG1975|consen 73 SSEVAEHYNERTEVGREKR---QRSPIIFLRNFNNWIKSVLINL--YTKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGI 146 (389)
T ss_pred hHHHHHHHHHHHHHhHhhh---ccCceeehhhhhHHHHHHHHHH--HhccccccceeccCCcccHhHhhhhccc-ceEee
Confidence 4455666665544443321 112221 2235555444443 3567789999999999999999877654 99999
Q ss_pred eCCHHHHHHHHhCCcccC---C----CceEEeccCCCcccc--cCCCCCcccEEEechhhcCCC--cchHHHHHHHHHHh
Q psy1107 110 DISPRAVNFFKLNPLYDA---S----KMNVFPCDVTEDDIL--NQVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIM 178 (218)
Q Consensus 110 D~s~~~~~~~~~~~~~~~---~----~i~~~~~d~~~~~~~--~~~~~~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~ 178 (218)
|++...++.|+.+..... . .+.|+.+|-+...+. ..+++.+||+|-|.+++|+.- .+..+.++..+.+.
T Consensus 147 DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~ 226 (389)
T KOG1975|consen 147 DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKC 226 (389)
T ss_pred ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh
Confidence 999999999998754221 1 367888887665432 233555699999999998663 45678899999999
Q ss_pred ccCCeEEEEE
Q psy1107 179 LKSGGIILFR 188 (218)
Q Consensus 179 Lk~gG~li~~ 188 (218)
|+|||+++-.
T Consensus 227 LkpGG~FIgT 236 (389)
T KOG1975|consen 227 LKPGGVFIGT 236 (389)
T ss_pred cCCCcEEEEe
Confidence 9999977654
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.40 E-value=1.3e-12 Score=102.82 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=79.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|.+++..++.+. .+|+++|+++.+++.|+.|+..++-...+..... .....++||+|
T Consensus 157 ~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~------~~~~~~~~dlv 229 (295)
T PF06325_consen 157 KYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS------EDLVEGKFDLV 229 (295)
T ss_dssp HHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT------SCTCCS-EEEE
T ss_pred HhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe------cccccccCCEE
Confidence 3346778999999999999999998875 3899999999999999999776663223322211 22334689999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
+++-. .+....+...+.++|+|||.|+++..-.....
T Consensus 230 vANI~-----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~ 266 (295)
T PF06325_consen 230 VANIL-----ADVLLELAPDIASLLKPGGYLILSGILEEQED 266 (295)
T ss_dssp EEES------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred EECCC-----HHHHHHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence 98532 23556788888999999999999875544443
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.39 E-value=3.6e-12 Score=99.58 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||||||.|.++..++...|..+++++|+++.+++.|++.+... ..++.++..|+.+. .... .++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~--l~~~-~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY--IAVH-RHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--HHhC-CCCCCEE
Confidence 44677999999999999999988888889999999999999999886543 36789999987652 1122 2479999
Q ss_pred Eechhh-cCCCcc-hHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVL-SAIHPN-KFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l-~~~~~~-~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
++...- ...++. ....++..+.+.|+|||.+++.-+...
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 985311 112211 236899999999999999998655433
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=5.2e-12 Score=84.08 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=80.8
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-ccCCCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+++|+|||.|..+..++. .+..+++++|+++..+..+++... ....++.+...|+.+.. ....+++|+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP---PEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc---cccCCceEEEEEccce
Confidence 589999999999988887 345699999999999998884322 22357888888887632 1234589999999888
Q ss_pred cCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 161 SAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+++ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 773 357889999999999999999875
No 104
>KOG3010|consensus
Probab=99.39 E-value=2.5e-12 Score=96.08 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=74.7
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEecc--CCCcc-cccCCCCCcccEEEec
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD--VTEDD-ILNQVPHNSVDIATLI 157 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~-~~~~~~~~~~D~i~~~ 157 (218)
..++|+|||+|.-++.++.... +|+++|+|+.+++.+.+.... .+.+.- +.+.+ +.+.-.+++.|+|+|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~-----~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPV-----TYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCc-----ccccCCccccccccccccCCCcceeeehhh
Confidence 4899999999977777777653 899999999999999887442 222211 11111 1111226699999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCe-EEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGG-IILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG-~li~~~~~ 191 (218)
..+|++ +..++.+.+.++||+.| .+.+..|.
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999999 78899999999998755 77776655
No 105
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=5.9e-12 Score=91.33 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
..+.++..++|||||+|..+.+++..+|.++++++|-++++++..++|....+ +|+.++.++.-+. +...+ ++|.
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~--L~~~~--~~da 105 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA--LPDLP--SPDA 105 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh--hcCCC--CCCE
Confidence 55678899999999999999999988899999999999999999999876554 7899999987541 12222 6999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.... .....+++.+...|+|||.++..-
T Consensus 106 iFIGGg------~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 106 IFIGGG------GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEECCC------CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 998765 256789999999999999999865
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=2.4e-12 Score=109.17 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=78.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+.+|||+|||+|.++..++...|..+++++|+|+.+++.|+.++...+ .++.++++|+.+ .++.++||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEEC
Confidence 468999999999999999887777899999999999999999865443 468888888754 2334579999984
Q ss_pred hhh--------------cCCC-------c---chHHHHHHHHHHhccCCeEEEEE
Q psy1107 158 FVL--------------SAIH-------P---NKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 158 ~~l--------------~~~~-------~---~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
-.. .+-| . +.+..++..+.++|+|||.+++.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 311 1111 0 12456778889999999998874
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.38 E-value=4.2e-12 Score=98.80 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=74.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--CceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS--KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++....+. .+.+.. .+.+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEE
Confidence 457889999999999999888776653 799999999999999988654331 111111 11169999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+++.. .+....++..+.++|+|||.+++........
T Consensus 184 vani~-----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~ 219 (250)
T PRK00517 184 VANIL-----ANPLLELAPDLARLLKPGGRLILSGILEEQA 219 (250)
T ss_pred EEcCc-----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhH
Confidence 98532 2345678899999999999999987654443
No 108
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.38 E-value=3.5e-12 Score=93.06 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=78.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||.|.+...+... .+.+.+|+|+++..+..+.++ .+.++++|+.+. ...+++++||.|
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~g--L~~f~d~sFD~V 79 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEG--LADFPDQSFDYV 79 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHh--HhhCCCCCccEE
Confidence 44578899999999999999888765 457999999999999999876 577899998773 356889999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIM 178 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~ 178 (218)
+++.++.++ ..+..+++++.++
T Consensus 80 IlsqtLQ~~--~~P~~vL~EmlRV 101 (193)
T PF07021_consen 80 ILSQTLQAV--RRPDEVLEEMLRV 101 (193)
T ss_pred ehHhHHHhH--hHHHHHHHHHHHh
Confidence 999999999 4788888888766
No 109
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.37 E-value=3.9e-12 Score=94.75 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCcEEEEecCCCchhHHHHh----hc----CC-ccEEEEEeCCHHHHHHHHhCC-------------------cc----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL----SW----SK-ICYIHACDISPRAVNFFKLNP-------------------LY---- 125 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~----~~----~~-~~~v~~~D~s~~~~~~~~~~~-------------------~~---- 125 (218)
.+..+|+..||++|.-...+| +. .+ ..+++|+|+|+.+++.|++-. ..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999995544433 31 11 469999999999999998742 00
Q ss_pred ------cCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 126 ------DASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 126 ------~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.-..+.|...|+.+ ...+.+.||+|+|..|+.++.++....+++.+.+.|+|||+|++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 01457788888776 23344689999999999999988899999999999999999999663
No 110
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.36 E-value=1.6e-11 Score=96.42 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=93.3
Q ss_pred HHhhhccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHh----hcC----CccEEEEEeCCHHHHHHHHhCCc
Q psy1107 53 KRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLL----SWS----KICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~----~~~----~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
..+.+.||++.... ..+...+....+..+|+..||++|.-...+| +.. ...+|+|+|+|+.+++.|++-.-
T Consensus 90 tineT~FFRd~~~f-~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 90 TTNLTAFFREAHHF-PILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred hCCCCCccCCcHHH-HHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 34456777775432 2232322222345899999999995444333 221 13689999999999999987520
Q ss_pred c-----------------------------cC---CCceEEeccCCCcccccCC-CCCcccEEEechhhcCCCcchHHHH
Q psy1107 125 Y-----------------------------DA---SKMNVFPCDVTEDDILNQV-PHNSVDIATLIFVLSAIHPNKFSTV 171 (218)
Q Consensus 125 ~-----------------------------~~---~~i~~~~~d~~~~~~~~~~-~~~~~D~i~~~~~l~~~~~~~~~~~ 171 (218)
. .+ ..+.|...|+.+. ++ +.+.||+|+|..++.|++++....+
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~----~~~~~~~fD~I~cRNvliyF~~~~~~~v 244 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK----QWAVPGPFDAIFCRNVMIYFDKTTQERI 244 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC----CCccCCCcceeeHhhHHhcCCHHHHHHH
Confidence 0 01 3467777777652 22 2468999999999999988889999
Q ss_pred HHHHHHhccCCeEEEEEec
Q psy1107 172 VKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 172 l~~~~~~Lk~gG~li~~~~ 190 (218)
+..+.+.|+|||+|++..-
T Consensus 245 l~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHhCCCcEEEEeCc
Confidence 9999999999999998663
No 111
>PRK14968 putative methyltransferase; Provisional
Probab=99.36 E-value=8.8e-12 Score=92.76 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-C--ceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-K--MNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~--i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....+. + +.++.+|+.+ .+...+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence 567799999999999999998873 6999999999999999877554332 2 7888888755 2334479999
Q ss_pred EechhhcCCC-------------------cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIH-------------------PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~-------------------~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+++..+.... ......+++.+.++|+|||.+++...
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 9865432211 12245688999999999999888653
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.36 E-value=2.5e-12 Score=99.86 Aligned_cols=106 Identities=23% Similarity=0.222 Sum_probs=78.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.++.++...+ +.++++|+.+.. .... .++||+|+++-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l-~~~~-~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDAL-PTAL-RGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhc-chhc-CCCEeEEEECCC
Confidence 458999999999999999887776799999999999999998865433 578888876521 1111 247999998643
Q ss_pred hc------CCCcc------------------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 160 LS------AIHPN------------------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 160 l~------~~~~~------------------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .++++ ....++..+.++|+|||.+++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 11111 13577888889999999988764
No 113
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-11 Score=91.69 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=83.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+|||||||+|..+..+++.. .+|+.+|..+...+.|+++....+ .|+.+.++|... ..-+...||.
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~----G~~~~aPyD~ 141 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK----GWPEEAPYDR 141 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc----CCCCCCCcCE
Confidence 566788999999999999999998876 399999999999999999877766 489999999876 2223368999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+.......+| ..+.+.|++||++++...
T Consensus 142 I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 99987666554 335568899999999775
No 114
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=1.5e-11 Score=92.09 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=73.5
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++... ...++++|+++.+++.++.. ++.+++.|+.+. ..++++++||+|+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~--l~~~~~~sfD~Vi 80 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG--LEAFPDKSFDYVI 80 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc--ccccCCCCcCEEE
Confidence 34567799999999999998887653 35789999999999988653 467778887541 1235567899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccC
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKS 181 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~ 181 (218)
+..+++|++ +...+++++.+.+++
T Consensus 81 ~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 999999995 677888888776654
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=1.7e-11 Score=95.79 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+|||+|||+|.++..++... +...|+++|+++.+.+.....+... .|+.++..|+..... ......++|+|
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~-y~~~~~~vDvV 206 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQK-YRMLVPMVDVI 206 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhh-hhcccCCCCEE
Confidence 35678899999999999999999873 4568999999987654443332211 478888899865321 11122479999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++... .++....++.++.++|||||.|++
T Consensus 207 ~~Dva----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 FADVA----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEeCC----CcchHHHHHHHHHHhccCCCEEEE
Confidence 88652 345666777889999999999999
No 116
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.33 E-value=3.9e-11 Score=93.09 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=98.3
Q ss_pred HhhHHHH---HHHhhhccCCCcccchH----HHHHHhhhcC-CCcEEEEecCCCchhHHHH----hhcCC-----ccEEE
Q psy1107 45 KKYWDLF---YKRNETKFFKDRNWTVN----EFHEFVNQDV-GEGVLLEVGCGVGNFIFPL----LSWSK-----ICYIH 107 (218)
Q Consensus 45 ~~~w~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~vLDiGcG~G~~~~~~----~~~~~-----~~~v~ 107 (218)
...|+.+ ...+.+.||++...... .++.++.... ...+|+-.||++|.-...+ .+..+ ..+|+
T Consensus 54 ~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~ 133 (268)
T COG1352 54 SEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKIL 133 (268)
T ss_pred HHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEE
Confidence 4445543 34456777777643221 2222322222 4789999999999543333 33332 47999
Q ss_pred EEeCCHHHHHHHHhCCcc-------------------c-----------CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 108 ACDISPRAVNFFKLNPLY-------------------D-----------ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 108 ~~D~s~~~~~~~~~~~~~-------------------~-----------~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
|+|+|..+++.|+.-.-. . -..|.|...|+..+ .+..+.||+|+|.
T Consensus 134 AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~----~~~~~~fD~IfCR 209 (268)
T COG1352 134 ATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDD----SPFLGKFDLIFCR 209 (268)
T ss_pred EEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCC----ccccCCCCEEEEc
Confidence 999999999999874200 0 13466777777663 2244589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.|+.++.......+++.+...|+|||+|++..-.
T Consensus 210 NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 210 NVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 9999998888999999999999999999997643
No 117
>PRK00811 spermidine synthase; Provisional
Probab=99.32 E-value=1e-11 Score=98.15 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc------cCCCceEEeccCCCcccccCCCCCcc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY------DASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
.++.+||++|||.|..+..+++..+..+|+++|+++.+++.|++.+.. ...++.++..|.... .....++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCCcc
Confidence 456799999999999999998764445899999999999999987542 235788999987652 12235689
Q ss_pred cEEEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|++...-...++.. ...+++.+.+.|+|||.+++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999854322222111 2577889999999999988743
No 118
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=2.3e-11 Score=101.55 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=84.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+|||+|||+|..+..++...+..+++++|+++.+++.++.++...+.++.+++.|+.+.. ...+.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCEE
Confidence 3456788999999999999999998876569999999999999999987766555788888887521 11234579999
Q ss_pred EechhhcC------C-------Ccc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSA------I-------HPN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~------~-------~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++...... - .++ .+..++..+.++|||||.++++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 96332111 0 111 13478999999999999999865
No 119
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.31 E-value=2.7e-11 Score=90.11 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+..++||+|+|.|..+..++...- -+|-.+|..+..++.|++..... +.-..++++.+.+ ...+.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~----f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQD----FTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhh----ccCCCCcEeEEEeh
Confidence 467999999999999987754432 38999999999999999765442 2335666666554 12224589999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++.|+++++...++.++...|+|+|++++-+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 99999999999999999999999999999865
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.30 E-value=2.4e-11 Score=90.57 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=77.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
....++.+|||+|||+|.++..++... +..+++++|+++.+ . ..++.+++.|+.+... ...++.+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 445678899999999999998888764 44689999999854 1 1357788888765321 0124456
Q ss_pred cccEEEechhhcC-----CC----cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 150 SVDIATLIFVLSA-----IH----PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 150 ~~D~i~~~~~l~~-----~~----~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+||+|++....+. +. .+....++..+.++|+|||.+++..+....
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE 151 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence 8999998543211 10 012467899999999999999996655444
No 121
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=2.4e-11 Score=93.41 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=83.8
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc--ccCCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI--LNQVP 147 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~--~~~~~ 147 (218)
++....++.+|||+|||+|..+..++... +..+++++|+++.+++.|++++...+ .++.++.+|+.+..- ....+
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCC
Confidence 33556678899999999999888887653 45799999999999999999876554 468899998865210 01112
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.++||+|++.. .......++..+.++|+|||.+++-
T Consensus 142 ~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 142 KPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899998742 2245667889999999999988873
No 122
>KOG2899|consensus
Probab=99.29 E-value=1.4e-11 Score=92.10 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=81.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC--------------------------
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-------------------------- 128 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-------------------------- 128 (218)
.....+..+|||||.+|.++..+++.+-...+.|+||++..+..|+.+......
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 445678899999999999999999886557899999999999999987542110
Q ss_pred ----------CceEEeccCC--CcccccCCCCCcccEEEechhhcCCC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 129 ----------KMNVFPCDVT--EDDILNQVPHNSVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 129 ----------~i~~~~~d~~--~~~~~~~~~~~~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++.|...+.. ..++ ..+....||+|+|..+-.+++ ++.+..++.++.++|.|||+|++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111111110 0011 133456899999977654432 467889999999999999999983
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=99.28 E-value=6.4e-11 Score=91.67 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.....+|||+|||+|.++..++...+..+++++|+++.+++.++.+. .++.+++.|+.+. . ...+||+|++
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVIS 132 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEE
Confidence 33457999999999999988877654569999999999999998864 3678889988762 1 2358999999
Q ss_pred chhhcCCCcchH------------------HHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKF------------------STVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~------------------~~~l~~~~~~Lk~gG~li~~ 188 (218)
+-.+.+.++.+. ..++.....+|+|+|.+++.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 877776654322 34556668889999976664
No 124
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.27 E-value=8.5e-12 Score=93.90 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=77.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||||||+|..+..++.. ++...|+++|.++...+.|+++....+ .++.+.++|.... ......||
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g----~~~~apfD 143 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG----WPEEAPFD 143 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT----TGGG-SEE
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc----cccCCCcC
Confidence 44678999999999999999988876 555689999999999999999877655 4899999987652 12235899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++......+| ..+.+.|++||+|++.-.
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999987665443 335678999999999654
No 125
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.27 E-value=1.6e-11 Score=91.69 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=81.7
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
...+||||||.|.++..+|...|+..++|+|++...+..+..++...+ .|+.++++|+.... ..-++++++|.|+..+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-RRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-HHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-hhcccCCchheEEEeC
Confidence 348999999999999999999999999999999999999988766544 79999999987631 1234567999999866
Q ss_pred hhcCCCcch------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNK------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--+.-... ...++..+.++|+|||.|.+.+
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 433322111 2478899999999999999865
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=2.4e-11 Score=97.13 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=76.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|.++..+++..+ ...|+++|+++.+++.|++++...+ .++.++..|+... .....+||+
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~fD~ 152 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAPYDV 152 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCCccE
Confidence 345678999999999999999987653 2479999999999999998765444 5688888887542 222347999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++...+.++ ...+.+.|+|||.+++..
T Consensus 153 Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 9986443332 334678899999988854
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.25 E-value=6.2e-11 Score=92.91 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +...++++|+++.+++.+++++...+ .++.+.+.|.... ....++||
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~----~~~~~~fD 142 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF----GAAVPKFD 142 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh----hhhccCCC
Confidence 445677899999999999999988764 23589999999999999998876655 4678888887542 22234699
Q ss_pred EEEechhhcC------C-------Ccc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSA------I-------HPN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~------~-------~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|++...... - .++ ....++..+.++|||||.|+.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9987332111 1 111 23468899999999999998875
No 128
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.25 E-value=5.6e-11 Score=87.96 Aligned_cols=108 Identities=14% Similarity=0.093 Sum_probs=84.5
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCc-eEEeccCCCcccccC----CCCCcccEEE
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKM-NVFPCDVTEDDILNQ----VPHNSVDIAT 155 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i-~~~~~d~~~~~~~~~----~~~~~~D~i~ 155 (218)
+|||||||+|..+..++...|.......|.+...+..........+ .|+ .-+..|+........ ....+||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999999999899999999988655555433222 232 344567776533221 2345899999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|..++|-++.+....++..+.++|++||.|+++.
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999999988889999999999999999999954
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=8.4e-11 Score=98.12 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+.+.|.... .....++||
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l---~~~~~~~fD 309 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL---TEYVQDTFD 309 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh---hhhhhccCC
Confidence 445677899999999999999988763 45699999999999999999876555 4578888887652 112345799
Q ss_pred EEEechhhcCC------C-------c-------chHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAI------H-------P-------NKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~------~-------~-------~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++....... | + ..+..++..+.++|||||.++++.-
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99973322111 1 1 1235778999999999999988763
No 130
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.24 E-value=4.1e-11 Score=86.93 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=69.2
Q ss_pred EEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 107 HACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 107 ~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
+|+|+|+.+++.|+++.... ..++.++++|+.+ .++++++||+|++..++++++ +...+++++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID----LPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh----CCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 48999999999997654321 2468999999977 567778999999999999984 7889999999999999
Q ss_pred eEEEEEecCCCc
Q psy1107 183 GIILFRDYGLHD 194 (218)
Q Consensus 183 G~li~~~~~~~~ 194 (218)
|.|++.++...+
T Consensus 75 G~l~i~d~~~~~ 86 (160)
T PLN02232 75 SRVSILDFNKSN 86 (160)
T ss_pred eEEEEEECCCCC
Confidence 999999987654
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=1.7e-10 Score=96.44 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceE--EeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV--FPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~--~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++...+..+++++|+++.+++.++.+.+..+..+.+ ..+|..... ...+.++||
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~fD 311 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQFD 311 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--ccccccccC
Confidence 3455778999999999999999988765679999999999999999887655533333 445543311 111345799
Q ss_pred EEEec------hhhcCCCc-------c-------hHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLI------FVLSAIHP-------N-------KFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~------~~l~~~~~-------~-------~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.|++. ++++..|. + .+..++..+.++|||||.|+++.-.
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99863 23333331 0 1467899999999999999987633
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.5e-10 Score=96.90 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=84.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+++.|+...........++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 34567899999999999999998763 34699999999999999998876655 46889999887631101123458999
Q ss_pred EEech------hhcCCCc-------ch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIF------VLSAIHP-------NK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~------~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.. ++.+-+. ++ +..++..+.++|||||.|++++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99732 2332221 11 4688999999999999998765
No 133
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.1e-10 Score=96.39 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=83.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++.+|||+|||+|..+..++... ...+++++|+++.+++.+++++...+ .++.+.+.|+... . +..+||
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD 320 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPD 320 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCC
Confidence 344567899999999999998887653 33599999999999999998876555 4688888887652 1 345799
Q ss_pred EEEech------hhcC-------CCcc-------hHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 153 IATLIF------VLSA-------IHPN-------KFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 153 ~i~~~~------~l~~-------~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
+|++.. ++.. ..++ .+..++..+.++|+|||.|++..-..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999631 1111 1111 23468999999999999999977443
No 134
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.20 E-value=6.1e-11 Score=90.05 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=87.2
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCC-CceEEeccCCCcccccCC-CCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDAS-KMNVFPCDVTEDDILNQV-PHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~-~~~~~D~i~~~~ 158 (218)
..+||||||.|.+...+|..+|+..++|+|+....+..|...+...+. |+.+++.|+... ...+ ++++.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~--l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV--LDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH--HHhcCCCCCeeEEEEEC
Confidence 589999999999999999999999999999999999999998887776 999999998763 2333 445999999866
Q ss_pred hhcCCCc-c-----hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHP-N-----KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~-~-----~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--+.-. . ....++..+.+.|+|||.|.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5333211 1 13478899999999999999965
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=1.9e-10 Score=92.36 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=79.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC--------cccCCCceEEeccCCCcccccCCCC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP--------LYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~--------~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..++.+||++|||.|..+..+++..+..+++++|+++.+++.|+... .....++.++..|.... .....
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSPS 224 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhcC
Confidence 35567999999999999988887655569999999999999999631 11246889999988752 12234
Q ss_pred CcccEEEechhhc--C-CCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLS--A-IHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~--~-~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++||+|++...-. . ...--...+++.+++.|+|||++++..
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 5899999863210 0 000112568899999999999988864
No 136
>PLN02366 spermidine synthase
Probab=99.19 E-value=1.9e-10 Score=91.52 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+||+||||.|..+..+++..+..+++.+|+++.+++.+++.+.. ...++.++..|.... ....+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~--l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF--LKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH--HhhccCCCCC
Confidence 467899999999999999998764345899999999999999987542 235799999987541 1223345899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEE
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~ 187 (218)
+|++...-...++. -...+++.+.+.|+|||.++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99985432222111 134688999999999998876
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.3e-10 Score=96.11 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=82.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++.+++.|+.... ..++ ++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~fD~ 323 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EKFDK 323 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-ccCCE
Confidence 34567899999999999999998764 55799999999999999998876555 46889999986621 1233 57999
Q ss_pred EEechhhcCC------C-------cch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAI------H-------PNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~------~-------~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++....... | +.+ ...++..+.++|||||.|++..
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9975321111 1 111 2467899999999999999654
No 138
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=87.46 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=86.8
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEe-ccCCCcccccCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFP-CDVTEDDILNQVP 147 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~-~d~~~~~~~~~~~ 147 (218)
.++....++.+|||||.+.|..++.|+...| +.+++++|.+++..+.|+++++..+ .++..+. +|..+. .....
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~--l~~~~ 129 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV--LSRLL 129 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH--HHhcc
Confidence 3335566889999999999999999998877 7899999999999999999977655 3466776 465542 12244
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.++||+|+.- ..+.+...+++.+.++|+|||++++-
T Consensus 130 ~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 130 DGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 5799999973 23357788999999999999987773
No 139
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.18 E-value=1.4e-11 Score=91.39 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=81.7
Q ss_pred HHHHHh--hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC
Q psy1107 69 EFHEFV--NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 69 ~~~~~~--~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 146 (218)
.+.+++ ....+..++||+|||+|-.+..+.... .+++|+|+|..|++.|.++-... ...+.+... +....
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~ 184 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDL 184 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH----HHHHHHHHH--Hhhhc
Confidence 344444 334457899999999999998887654 38999999999999998873211 111222211 11223
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+||+|++..|+.++ .....++--+...|+|||.|.++.
T Consensus 185 ~~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 185 TQERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred cCCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEe
Confidence 34589999999999999 588899999999999999999975
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.18 E-value=7.7e-11 Score=88.46 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
....++.+||||||++|..+..++...| +.+++.+|.++...+.|++.+...+ .++.++.+|..+.. +...-+.+
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 4456788999999999999999998754 5799999999999999998866544 57999999876521 11112235
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|+.-. .......+++.+.++|+|||.+++-.
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 899999743 34678889999999999999877743
No 141
>KOG2904|consensus
Probab=99.18 E-value=3e-10 Score=86.60 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc-ccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI-LNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~-~~~~~~~~~D~i 154 (218)
.++..|||+|||+|..+..++...|...++++|.|+.++..|.+|+.... +.+.+++.+.+.+.. ..+...+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 34558999999999999999988888999999999999999999976544 456666554444322 234566899999
Q ss_pred EechhhcCCCcch--------------------------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNK--------------------------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~--------------------------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++-. +++.++ ...++.-+.++|+|||.+.+.-
T Consensus 227 vsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 98432 111111 3366777889999999888754
No 142
>KOG1541|consensus
Probab=99.18 E-value=2e-10 Score=84.85 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=83.2
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
...+.-|||||||+|..+..+...+ -..+|+|+|+.|++.|.+.- ..-.++.+|+-. -.+++.++||.+++
T Consensus 48 ~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e----~egdlil~DMG~---GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 48 GPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERE----LEGDLILCDMGE---GLPFRPGTFDGVIS 118 (270)
T ss_pred CCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhh----hhcCeeeeecCC---CCCCCCCccceEEE
Confidence 3357899999999999998887666 48999999999999999631 123567777765 36888999999988
Q ss_pred chhhcCC---C------cchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 157 IFVLSAI---H------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 157 ~~~l~~~---~------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
...+.++ . ......++..++..|++|+..++--|..++..
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 6554433 1 11244678889999999999988776655554
No 143
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.17 E-value=1.8e-10 Score=94.89 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=80.1
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.+++++..++ .++.++++|+.+..........+||
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 34567899999999999988766544 3499999999999999999876554 3688999998652100111234799
Q ss_pred EEEechhhcCCCc-------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|++.-....-.. .....++..+.++|+|||.|++.+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998643211111 134456667889999999988754
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=85.92 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCchhHHHHhhcC---CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS---KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~---~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.|+.+.. ++.+.+.|+... .+ .++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~----~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTT----EF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhcc----cc-cCCccEEE
Confidence 46799999999999999887652 34699999999999999997743 578888888652 22 34899999
Q ss_pred echhhcCCCc----------chHHHHHHHHHHhccCCeEEEE
Q psy1107 156 LIFVLSAIHP----------NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 156 ~~~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++-.+.-... .....++..+.+++++|+. ++
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9665442221 1144688888887777775 44
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.17 E-value=1.8e-10 Score=90.55 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
++.+||++|||+|..+..++...+..+++++|+++.+++.+++..... ..++.++..|.... .....++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~---l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF---LADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH---HHhCCCCccE
Confidence 455999999999999988887654568999999999999999865321 24677777765431 1112358999
Q ss_pred EEechhhcCCCcch--HHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.......+... ...+++.+.+.|+|||.+++..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99854321111112 4578899999999999998853
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=2.6e-10 Score=95.80 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... .+++++|+|+.+++.|++++...+ .++.+..+|+.+.....++...+||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3566899999999999999998876 489999999999999999876544 5799999998652111123345799998
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.- |.......+..+.+ ++|+++++++.
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 742 22233455555544 68999988876
No 147
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.15 E-value=1.2e-10 Score=85.52 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=74.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
...++.+|||+|||+|..++.++......+|+..|.++ .+..++.+...+. .++.+...|..+..........+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34578899999999999999998874456999999998 8888888765432 577888887755321112334589
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+|++..+++.- +....++..+.++|+++|.+++..-.
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999998754 68889999999999999986665433
No 148
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.14 E-value=1e-09 Score=81.05 Aligned_cols=103 Identities=21% Similarity=0.447 Sum_probs=64.6
Q ss_pred cccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 63 RNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 63 ~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..|....+..++ ...++...|-|+|||.+.++..+... ..|..+|+-. .+-.+..||+.+
T Consensus 53 ~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva--------------~n~~Vtacdia~ 115 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA--------------PNPRVTACDIAN 115 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS---------------SSTTEEES-TTS
T ss_pred hcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC--------------CCCCEEEecCcc
Confidence 355554444444 44455679999999999998665322 3799999733 234577899977
Q ss_pred cccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 140 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|+++++.|++++.-.|..- ++..++.++.|+|||||.|.+.+
T Consensus 116 ----vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 116 ----VPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp -----S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEE
Confidence 67888999999987666555 78999999999999999999987
No 149
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=7.9e-10 Score=80.99 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=71.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++... ..++.+++.|+.+ ..++..++|.|++
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~----~~~~~~~~d~vi~ 83 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALK----FDLPKLQPYKVVG 83 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhc----CCccccCCCEEEE
Confidence 3456799999999999999999874 5999999999999999988653 3578899999877 3344446899987
Q ss_pred chhhcCCCcchHHHHHHHHHHh--ccCCeEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIM--LKSGGIILF 187 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~--Lk~gG~li~ 187 (218)
+-.+ +. ...++..+.+. +.++|.+++
T Consensus 84 n~Py-~~----~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 84 NLPY-NI----STPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CCCc-cc----HHHHHHHHHhcCCCcceEEEEE
Confidence 5433 22 22334444332 347777766
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.14 E-value=2.1e-10 Score=101.18 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..+....++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..++ .++.++++|+.+. .... .
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~~-~ 606 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKEA-R 606 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHHc-C
Confidence 3334445678999999999999999998653 379999999999999999976544 3689999998652 1112 3
Q ss_pred CcccEEEechhhcCCC---------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIH---------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+||+|++.-....-. ..+...++..+.++|+|||.+++..
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5899999853210000 1235677888899999999998855
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.7e-10 Score=85.09 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=85.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|+|.|.|+|.++..++.. +|..+++.+|+.+...+.|++|+...+ .++.+...|+.+. .... .|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~----~~~~-~v 164 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG----IDEE-DV 164 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc----cccc-cc
Confidence 56789999999999999999999864 777899999999999999999976533 3488888888773 2223 89
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|.|++ .+| ++..+++.+..+|+|||.+++..
T Consensus 165 Dav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 165 DAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred CEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEc
Confidence 99996 344 67789999999999999998865
No 152
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=6.5e-10 Score=83.16 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|||+|||+|.++..++..+. .+++++|.++.+++.++++++..+ .++.+++.|+.+. ......+||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~---l~~~~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF---LAQPGTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---HhhcCCCceEEEE
Confidence 4567999999999999987665554 599999999999999998866544 4688989887652 1112346999998
Q ss_pred chhhcCCCcchHHHHHHHHHH--hccCCeEEEEEecCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFI--MLKSGGIILFRDYGL 192 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~li~~~~~~ 192 (218)
.-.+.. .....++..+.. +|+|+|++++.....
T Consensus 128 DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 128 DPPFRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 644211 233445555544 478999888876543
No 153
>PLN02476 O-methyltransferase
Probab=99.13 E-value=5.1e-10 Score=87.37 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=85.5
Q ss_pred HHhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc--CC
Q psy1107 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN--QV 146 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~--~~ 146 (218)
.++....++.+|||+|+++|..+..++... +..+++++|.+++..+.|+++++..+ .++.++.+|+.+..-.. .-
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 333556678999999999999999998764 35689999999999999999876555 47999999876521000 11
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
..++||+|+... +......+++.+.++|+|||.+++-
T Consensus 191 ~~~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred cCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 135899999742 3356788999999999999988773
No 154
>PLN02672 methionine S-methyltransferase
Probab=99.09 E-value=4.9e-10 Score=101.31 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=79.0
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-----------------CCceEEeccCCCccc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-----------------SKMNVFPCDVTEDDI 142 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-----------------~~i~~~~~d~~~~~~ 142 (218)
+.+|||+|||+|..++.++...+..+++++|+|+.+++.|+.|+..++ .++.+++.|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 468999999999999999988877799999999999999998865321 36899999986521
Q ss_pred ccCCCCCcccEEEechh--------------hcCCC-------------------c---chHHHHHHHHHHhccCCeEEE
Q psy1107 143 LNQVPHNSVDIATLIFV--------------LSAIH-------------------P---NKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~--------------l~~~~-------------------~---~~~~~~l~~~~~~Lk~gG~li 186 (218)
.-...+||+|+++-. ..+-| . +.+.+++..+.++|+|||.++
T Consensus 198 --~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 198 --RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred --cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 101136999998321 10100 0 113678888899999999888
Q ss_pred EEec
Q psy1107 187 FRDY 190 (218)
Q Consensus 187 ~~~~ 190 (218)
+-..
T Consensus 276 lEiG 279 (1082)
T PLN02672 276 FNMG 279 (1082)
T ss_pred EEEC
Confidence 7543
No 155
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.08 E-value=1.5e-09 Score=82.73 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=80.7
Q ss_pred chHHHHHHhhhc-------CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC
Q psy1107 66 TVNEFHEFVNQD-------VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138 (218)
Q Consensus 66 ~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~ 138 (218)
...++..++... ....++||||+|.|..+..++..+. +|++.|.|+.|....+++ ...++.. .
T Consensus 74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------g~~vl~~--~ 143 (265)
T PF05219_consen 74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------GFTVLDI--D 143 (265)
T ss_pred cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------CCeEEeh--h
Confidence 345666665222 2567899999999999999988774 899999999999888875 2222222 1
Q ss_pred CcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 139 EDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 139 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+ + .. .+.+||+|.|..++.-. +.+..+++.+++.|+|+|+++++
T Consensus 144 ~--w-~~-~~~~fDvIscLNvLDRc--~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 D--W-QQ-TDFKFDVISCLNVLDRC--DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred h--h-hc-cCCceEEEeehhhhhcc--CCHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1 11 13479999999998866 57889999999999999999984
No 156
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.08 E-value=7.9e-10 Score=85.02 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||.|.|+|.++..++.. +|..+|+.+|+.+...+.|+++++..+ .++.+.+.|+....+.... +..+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCcc
Confidence 66789999999999999999999865 688899999999999999999977654 5799999999763331122 3579
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhc-cCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIML-KSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~L-k~gG~li~~~ 189 (218)
|.|++- +| ++-..+..+.+.| ++||.+++..
T Consensus 115 DavfLD-----lp--~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 115 DAVFLD-----LP--DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEEEEE-----SS--SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cEEEEe-----CC--CHHHHHHHHHHHHhcCCceEEEEC
Confidence 999873 43 4556788899999 8999998865
No 157
>PRK03612 spermidine synthase; Provisional
Probab=99.07 E-value=1.2e-09 Score=93.39 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC--c------ccCCCceEEeccCCCcccccCCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP--L------YDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
+++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++. . ..+++++++..|..+. .....+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~---l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW---LRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---HHhCCC
Confidence 4678999999999999999987543369999999999999999842 1 1225788899987652 111235
Q ss_pred cccEEEechhhcCCCc---chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP---NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|++.......+. --...+++.+.+.|+|||.+++..
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 8999998643221110 012357889999999999988854
No 158
>KOG1499|consensus
Probab=99.06 E-value=4.8e-10 Score=88.58 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=77.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.+..+++.|||+|||+|.++...|+.+. .+|+++|.|.-+ +.|.+....++ ..+.++++.+.+. .+|..+.|
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi----~LP~eKVD 129 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI----ELPVEKVD 129 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE----ecCcccee
Confidence 3456789999999999999999999985 599999987655 77766655444 3578888887773 44456899
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEE
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li 186 (218)
+|++.+.-+++- .+.+..++----++|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999977655553 2234444444468999999665
No 159
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=79.40 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=62.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.-.+.+|+|+|||+|.+++..+..++ ..|+++|+++++++.++++......++.|+++|+.+. .+.+|.++.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvim 114 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVIM 114 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEEE
Confidence 44677899999999999999988887 4999999999999999999887778999999999773 235676666
Q ss_pred c
Q psy1107 157 I 157 (218)
Q Consensus 157 ~ 157 (218)
+
T Consensus 115 N 115 (198)
T COG2263 115 N 115 (198)
T ss_pred C
Confidence 4
No 160
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.03 E-value=1.4e-09 Score=87.42 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=73.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.|++++...+ .++.|++.|+.+.. ....+.||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEEC
Confidence 56899999999999999999865 599999999999999998876554 47899999986521 1123469999975
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-. .......+..+...+.|+++++++.
T Consensus 248 PP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 248 PP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 22 1222222333344468888888876
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.03 E-value=3.9e-09 Score=74.80 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=101.2
Q ss_pred cccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc
Q psy1107 63 RNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141 (218)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 141 (218)
..|+.+.+... .....+..|||+|.|+|.++..+++++ +...++++++|+..+....+... .++++.+|..+..
T Consensus 33 Ss~lA~~M~s~-I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l~ 107 (194)
T COG3963 33 SSILARKMASV-IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDLR 107 (194)
T ss_pred cHHHHHHHHhc-cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----CccccccchhhHH
Confidence 34555555554 344567899999999999999998874 44589999999999999998754 3558888877653
Q ss_pred -cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 142 -ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 142 -~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
.........||.|++.-.+-.+|.....++++.+...|.+||.++--.|++-+.
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s~ 162 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLSP 162 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCCc
Confidence 123455668999999888888888888899999999999999999999885544
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.00 E-value=3.6e-09 Score=84.08 Aligned_cols=110 Identities=23% Similarity=0.258 Sum_probs=86.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEec-cCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPC-DVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~~~~~~D 152 (218)
+...++..|||.-||||.+++...-.+ ++++|.|++..++.-++.|....+ ....+... |+++ .+++..++|
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~----lpl~~~~vd 266 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN----LPLRDNSVD 266 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc----CCCCCCccc
Confidence 667788899999999999999987766 699999999999999999988775 45555554 8887 567777899
Q ss_pred EEEechhhcC---CC----cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSA---IH----PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~---~~----~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.|++--...- .. .+....+++.+.++|++||++++...
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9998332111 11 13367888999999999999988764
No 163
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.99 E-value=9.1e-09 Score=79.58 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccC-CCc-eEEeccCCCcccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDA-SKM-NVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~-~~i-~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....+.+||||.||.|......+...|. .++...|+|+..++..++.++..+ .++ +|.+.|..+......+. ...
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~-p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD-PAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC-CCC
Confidence 4467889999999999999888887765 589999999999999999877665 444 99999998864433332 257
Q ss_pred cEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++++....++.+++.+ ....+..+...+.|||+|+...
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999999998644 4567899999999999999866
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.96 E-value=2.8e-09 Score=82.22 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=83.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV----- 146 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~----- 146 (218)
....++.+|||||+++|..++.++... +..+++++|.++...+.|+.++...+ .++.++.+|..+. ...+
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~--L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--LDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH--HHHHHhccc
Confidence 555678899999999999999998764 46799999999999999998876544 6899999987652 1111
Q ss_pred CCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 147 PHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..++||+|+.-. .......+++.+.++|+|||++++
T Consensus 153 ~~~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 153 YHGTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cCCcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 125899999742 235677888889999999998776
No 165
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.96 E-value=4.5e-09 Score=86.39 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred hccCCCcccchHHHHHHhh---hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFVN---QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..|++......+.+...+. ...++.+|||++||+|.++..++..+ .+++++|+++.+++.++.+++..+ .++.|
T Consensus 208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~ 285 (374)
T TIGR02085 208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSF 285 (374)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 3444544444444433321 12355799999999999999998655 589999999999999999876554 47899
Q ss_pred EeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 133 FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 133 ~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+|+.+.. .. ...+||+|++.-.-..+ ...++..+. .++|++++++..
T Consensus 286 ~~~d~~~~~--~~-~~~~~D~vi~DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 286 AALDSAKFA--TA-QMSAPELVLVNPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred EECCHHHHH--Hh-cCCCCCEEEECCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 999986521 11 12359999875322212 234445454 468999988877
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.93 E-value=4.1e-09 Score=88.40 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+|||+|||+|.++..++... .+++++|+++.+++.|+.++...+ .++.++.+|+.+..........+||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999998765 489999999999999999876544 5799999998652100112344799998
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.-.-.. ....+++.+.+ ++|+++++++.
T Consensus 368 ~dPPr~G----~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRKG----CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ECcCCCC----CCHHHHHHHHh-cCCCEEEEEcC
Confidence 6422111 12455555443 78999887765
No 167
>PLN02823 spermine synthase
Probab=98.93 E-value=8.6e-09 Score=83.02 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
.++.+||.+|+|.|..+..+++..+..+++++|+++.+++.+++.+... +.++.++..|.... .....++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~---L~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE---LEKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH---HhhCCCCcc
Confidence 3567999999999999998887655568999999999999999886532 36788999987762 222345899
Q ss_pred EEEechhhcC---CCcc--hHHHHHH-HHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSA---IHPN--KFSTVVK-NLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~---~~~~--~~~~~l~-~~~~~Lk~gG~li~~ 188 (218)
+|++... .. .++. -...+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998521 11 1110 1235676 789999999988764
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.92 E-value=1.3e-08 Score=75.06 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=79.0
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechhh
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l 160 (218)
+++|+|+|.|.-++.++-..|+.+++.+|.+.+.+...+......+ .|+.+++..+.+ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehh-
Confidence 8999999999999999999999999999999999988887766555 679999988765 233458999999644
Q ss_pred cCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 161 SAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.....++..+..++++||.+++.-
T Consensus 125 -----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 356788899999999999998865
No 169
>KOG1331|consensus
Probab=98.92 E-value=7.7e-09 Score=79.58 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=98.2
Q ss_pred HHHHHhhhccCCCcccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCC
Q psy1107 50 LFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129 (218)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~ 129 (218)
..|..-...|..++....+....++.....+..++|+|||.|-.+. ..|.+.++++|++...+..+++. ..
T Consensus 16 ~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-----~~ 86 (293)
T KOG1331|consen 16 SIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-----GG 86 (293)
T ss_pred HHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-----CC
Confidence 3555555555556555555555665555668899999999997762 23777999999999888877654 11
Q ss_pred ceEEeccCCCcccccCCCCCcccEEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 130 i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.....+|+.+ .++...+||.++...++||+.. .....+++++.+.|+|||...+..+....
T Consensus 87 ~~~~~ad~l~----~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 87 DNVCRADALK----LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ceeehhhhhc----CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 1566678777 6777889999999999999974 45668999999999999998887655433
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=7e-09 Score=77.21 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=74.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCC-CCC-ccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQV-PHN-SVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~-~~~-~~D 152 (218)
..++.++||++||+|.++..++.++. .+++++|.++.+++.+++++...+ .++.++..|+.... ... ... .+|
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l--~~~~~~~~~~d 123 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL--KFLAKKPTFDN 123 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH--HHhhccCCCce
Confidence 34678999999999999999999875 389999999999999998876544 36788899885421 111 122 367
Q ss_pred EEEechhhcCCCcchHHHHHHHHH--HhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLF--IMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~li~~~ 189 (218)
+|+..-.+.. .....++..+. .+|+++|++++-.
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 7776433221 23344454443 4688888777644
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.91 E-value=5.1e-09 Score=85.92 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|||++||+|..++.++...+..+|+++|+++.+++.++.+++.++ .++.+.+.|+.... .. ...||+|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l--~~--~~~fD~V~lD- 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL--HE--ERKFDVVDID- 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH--hh--cCCCCEEEEC-
Confidence 358999999999999999876544589999999999999999876554 45667888875421 11 3469999874
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.....++..+.+.+++||++++..
T Consensus 133 -----P~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 -----PFGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -----CCCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 22344567888788899999999974
No 172
>KOG3191|consensus
Probab=98.90 E-value=1.3e-08 Score=73.22 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=82.5
Q ss_pred CcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
+..+||||||+|..+..+++. +|+..+.++|+++.+.+...+.+..+..++..+++|+.. .+..++.|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-----~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-----GLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-----hhccCCccEEEECC
Confidence 678999999999999888866 577789999999999999887776666678888888765 33346889888743
Q ss_pred hhcCCCcc-------------------hHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPN-------------------KFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
..---+++ ..++++.++-.+|.|.|.+++.....+...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 21111111 134667777788899999998776555544
No 173
>KOG3420|consensus
Probab=98.89 E-value=3.7e-09 Score=73.15 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-.+.+++|+|||.|.+++......+ ..+.|+|+++++++.+..|+..-.-++.+++||+.+ ..+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild----le~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD----LELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc----hhccCCeEeeEEec
Confidence 4688999999999999977765544 489999999999999999988766788999999988 44555789999875
Q ss_pred hhh
Q psy1107 158 FVL 160 (218)
Q Consensus 158 ~~l 160 (218)
-.+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 443
No 174
>KOG2940|consensus
Probab=98.89 E-value=1.9e-09 Score=80.28 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
.....++||||+.|.....+...+- .+++.+|.|..+++.++.... ....+....+|-.. .++.++++|+|+..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~----Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEF----LDFKENSVDLIISS 144 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCC-CceEEEEEecchhc----ccccccchhhhhhh
Confidence 4467899999999999999988774 489999999999999987532 11345566666544 56888899999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhhcc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~ 200 (218)
..+|+. .+....+.++...|||+|.|+.+-++......+++
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 999988 47778889999999999999888788777776655
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=6e-09 Score=88.69 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=84.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.....+||||||.|.++..+|..+|+..++|+|++...+..+.......+ .|+.+.+.|+.. +...++++++|.|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~--~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL--ILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH--HHHhcCcccccEEEE
Confidence 34678999999999999999999999999999999998888877654433 578887776533 224477788999998
Q ss_pred chhhcCCCcc------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 157 IFVLSAIHPN------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+.--+.-.. ....++..+.++|+|||.+.+.+
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 7653332111 12478899999999999998865
No 176
>KOG3178|consensus
Probab=98.87 E-value=1.3e-08 Score=80.59 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=80.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
-...+|+|.|.|..+..+...+|. +-+++.+...+..+..... ..+..+-+|... . .| +-|+|++.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq----~-~P--~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQ----D-TP--KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceecccccc----c-CC--CcCeEEEEee
Confidence 478999999999999999988774 6666666666655555432 227777777766 2 34 3579999999
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+||+++++..+++++++..|+|||.+++.+.-..
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 9999999999999999999999999999886333
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=9.3e-09 Score=83.93 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=83.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...+++||++.|=||.++...+..+. .+++.+|.|..+++.|++|+..++ ..+.+++.|+.+-.-...-...+||+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 34589999999999999999998774 399999999999999999977655 45789999986621111122348999
Q ss_pred EEechh-hcCCC------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFV-LSAIH------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~-l~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++--. +.--+ ..+...++..+.++|+|||.+++..
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 998321 11000 1345678888999999999999866
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.85 E-value=1.3e-08 Score=75.10 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=74.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccE---------EEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICY---------IHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDIL 143 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~---------v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~ 143 (218)
....++..+||..||+|.+.++.+....... ++|+|+++.+++.++.++...+ ..+.+.+.|+.+
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~---- 99 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE---- 99 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG----
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh----
Confidence 4456778999999999999998877655444 8999999999999999876544 457888889887
Q ss_pred cCCCCCcccEEEechhhcCC-C-----cchHHHHHHHHHHhccCCeEEEE
Q psy1107 144 NQVPHNSVDIATLIFVLSAI-H-----PNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~-~-----~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.++..+++|.|++.-....- . ..-...+++.+.+++++...+++
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34556689999985443221 1 01244677888899999444433
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.84 E-value=9.9e-09 Score=85.77 Aligned_cols=103 Identities=23% Similarity=0.226 Sum_probs=69.8
Q ss_pred CcEEEEecCCCchhHHHHhhcC----CccEEEEEeCCHHHHHHHHhCCc--ccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS----KICYIHACDISPRAVNFFKLNPL--YDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~----~~~~v~~~D~s~~~~~~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
+..|+|+|||+|.++...++.+ ...+|++++-++.++..++.... ..+.+|.++++|+++-. .+. ++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~----lpe-kvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE----LPE-KVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC----HSS--EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC----CCC-ceeE
Confidence 5789999999999987766553 23599999999988877654422 23468999999998833 233 8999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
|++-..-....-+.....+..+.+.|||+|+++=
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9985432222224455678888899999997663
No 180
>KOG3045|consensus
Probab=98.84 E-value=2.5e-08 Score=75.64 Aligned_cols=90 Identities=21% Similarity=0.424 Sum_probs=69.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
........|.|+|||-+.++. .-+ -.|..+|+-+ .+-+++.||+.+ .++++++.|++
T Consensus 176 k~r~~~~vIaD~GCGEakiA~----~~~-~kV~SfDL~a--------------~~~~V~~cDm~~----vPl~d~svDva 232 (325)
T KOG3045|consen 176 KRRPKNIVIADFGCGEAKIAS----SER-HKVHSFDLVA--------------VNERVIACDMRN----VPLEDESVDVA 232 (325)
T ss_pred HhCcCceEEEecccchhhhhh----ccc-cceeeeeeec--------------CCCceeeccccC----CcCccCcccEE
Confidence 344566789999999988774 112 2788888722 356778899988 68888999999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
++.-.+..- ++..++.++.++|++||.|++.+.
T Consensus 233 V~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 233 VFCLSLMGT---NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EeeHhhhcc---cHHHHHHHHHHHhccCceEEEEeh
Confidence 876555443 788999999999999999999873
No 181
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=1.8e-08 Score=80.43 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-C--CCceEEec-cCCCcccccC--CCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-A--SKMNVFPC-DVTEDDILNQ--VPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~--~~i~~~~~-d~~~~~~~~~--~~~~~~D 152 (218)
+..++||||||+|.....++...+.++++++|+++.+++.|+.++..+ + .++.+... |..+ +... .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 468999999999988877777666789999999999999999997765 2 35666543 2211 1112 2355899
Q ss_pred EEEechhhcC
Q psy1107 153 IATLIFVLSA 162 (218)
Q Consensus 153 ~i~~~~~l~~ 162 (218)
+|+|+-.++.
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999766543
No 182
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.82 E-value=5e-09 Score=77.46 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=80.6
Q ss_pred HHHHHHhhhc-CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc
Q psy1107 68 NEFHEFVNQD-VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 68 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 144 (218)
+.+..++... -++.++||+.||+|.++.+.+.++. .+++.+|.++.++..++++.+..+ .++.++..|+.......
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence 3444444444 5789999999999999999999885 399999999999999999976554 34778888865421111
Q ss_pred CCCCCcccEEEechhhcCCCcch-HHHHHHHHH--HhccCCeEEEEEecC
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNK-FSTVVKNLF--IMLKSGGIILFRDYG 191 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~--~~Lk~gG~li~~~~~ 191 (218)
.....+||+|++.-.... .. ...++..+. .+|+++|.+++-...
T Consensus 109 ~~~~~~fDiIflDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHCTS-EEEEEE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred cccCCCceEEEECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 113568999998533221 23 367777776 789999988875533
No 183
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.81 E-value=8.6e-08 Score=76.65 Aligned_cols=147 Identities=10% Similarity=0.026 Sum_probs=97.9
Q ss_pred HhhhhHhhHHHHHHHhhhccCCCc---ccchHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcC----CccEEEEEeCC
Q psy1107 40 IEQNKKKYWDLFYKRNETKFFKDR---NWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS----KICYIHACDIS 112 (218)
Q Consensus 40 ~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~----~~~~v~~~D~s 112 (218)
|....-+.|+..... ..|+..+ ..+.+...+++....++..++|+|||+|.-+..++... ....|+++|+|
T Consensus 36 YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 36 YDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred hcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 444555667764322 3333222 22333445555666777799999999998877666542 23589999999
Q ss_pred HHHHHHHHhCCc-ccCCCc--eEEeccCCCcccccC--CCCCcccEEEech-hhcCCCcchHHHHHHHHHH-hccCCeEE
Q psy1107 113 PRAVNFFKLNPL-YDASKM--NVFPCDVTEDDILNQ--VPHNSVDIATLIF-VLSAIHPNKFSTVVKNLFI-MLKSGGII 185 (218)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~i--~~~~~d~~~~~~~~~--~~~~~~D~i~~~~-~l~~~~~~~~~~~l~~~~~-~Lk~gG~l 185 (218)
..+++.+..... ..-+.+ .-+++|+.+.....+ .......+++..+ .+.++++.....+++.+.+ .|+|||.|
T Consensus 114 ~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~l 193 (319)
T TIGR03439 114 RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSF 193 (319)
T ss_pred HHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 999999998876 322344 447788766421111 1122346666654 7999999999999999999 99999988
Q ss_pred EEE
Q psy1107 186 LFR 188 (218)
Q Consensus 186 i~~ 188 (218)
++.
T Consensus 194 LiG 196 (319)
T TIGR03439 194 LIG 196 (319)
T ss_pred EEe
Confidence 884
No 184
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.80 E-value=2.2e-08 Score=74.78 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=72.7
Q ss_pred HHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 148 (218)
..+.....++.+|||+.||.|.+++.++...+...|+++|++|.+++.+++++..+. ..+..+++|..+. . +.
T Consensus 93 ~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~---~--~~ 167 (200)
T PF02475_consen 93 RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF---L--PE 167 (200)
T ss_dssp HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------T
T ss_pred HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh---c--Cc
Confidence 344445678899999999999999999985555689999999999999999876554 4577888887662 1 15
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
+.+|-|++.. | .....++..+.+++++||.+
T Consensus 168 ~~~drvim~l-----p-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 168 GKFDRVIMNL-----P-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp T-EEEEEE-------T-SSGGGGHHHHHHHEEEEEEE
T ss_pred cccCEEEECC-----h-HHHHHHHHHHHHHhcCCcEE
Confidence 6899888742 2 23346888899999999865
No 185
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=6.5e-08 Score=75.96 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-----CCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-----ASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+..+ .+||-||.|.|..++.+++..+..+++.+|+++..++.+++.+... .+++.++..|..+ +....+.
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~v~~~~~- 148 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--FLRDCEE- 148 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--HHHhCCC-
Confidence 34444 6999999999999999999887779999999999999999975532 2677888888765 2222333
Q ss_pred cccEEEechhhcCCCcc---hHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIHPN---KFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+||+|++...-. ..|. --..+++.+.+.|+++|+++..
T Consensus 149 ~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 149 KFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 899999843211 1111 1257899999999999988886
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=1.2e-07 Score=71.17 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCc-ccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNS-VDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~~ 157 (218)
+.+++|||+|.|.-++.++-..|+.+++.+|...+.+...+......+ .|+++++..+.+.. . ... ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----~-~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----Q-EKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----c-ccccCcEEEee
Confidence 689999999999999999988898999999999999999988877666 57999999886621 1 112 9999996
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.+ .....+++-+..++++||.+++
T Consensus 143 Av------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hc------cchHHHHHHHHHhcccCCcchh
Confidence 54 2456778888999999988754
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1.4e-07 Score=65.44 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCch-hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCGVGN-FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG~G~-~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.++||||||+|. .+..+++.+ ..|+++|+++.+++.++.+ .++++..|+++... .+ -..+|+|.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~--~~-y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL--EI-YKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH--HH-HhcCCEEEEe
Confidence 45789999999996 787888766 5999999999999999875 46888999987432 11 2368999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
. ||.+....+..+.+.+ |.-+++...+...
T Consensus 85 r-----pp~el~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 85 R-----PPRDLQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred C-----CCHHHHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 2 4344455555555543 4457777766554
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.74 E-value=9.2e-08 Score=80.38 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||+|+|+|.-+..++... ....+++.|+++..+..++.++...+ .++.+...|..... ..+ ...||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~--~~~-~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG--AAL-PETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--hhc-hhhcCe
Confidence 45688999999999999999998763 33589999999999999998877665 56777777776521 122 347999
Q ss_pred EEechh------hcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFV------LSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~------l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++-.. +..-| ++ .+..++..+.++|||||.|+.+.
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 996222 21111 11 13588899999999999998765
No 189
>KOG1500|consensus
Probab=98.71 E-value=6.2e-08 Score=76.20 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=73.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.|||+|||+|.++...+..+. .+|++++. .++.+.|+...+.+. .++.++.+-+.+ -.+|+ +.|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEd----ieLPE-k~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIED----IELPE-KVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCcccc----ccCch-hccEE
Confidence 34678999999999999998888875 49999996 567788887755443 578888887766 34444 78999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++.-.-.-+--+......-.++++|+|+|..+-
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 974322212112333444557899999997764
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.71 E-value=3.2e-07 Score=71.58 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=52.3
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
...++.+|||+|||+|.++..++..++ .++++|+++.+++.++.+... ..++.++++|+...
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV 87 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence 345678999999999999999998874 699999999999999887543 35788999998763
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.70 E-value=9.5e-09 Score=76.10 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCC--CCcc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVP--HNSV 151 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~--~~~~ 151 (218)
++.++||+||++|.|+..++... +..+++++|+.+.. ....+.++.+|+.+... ...+. ...+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------PLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------cccceeeeecccchhhHHHhhhhhccccccCc
Confidence 56899999999999999998876 56799999997751 11355666666655321 11122 2589
Q ss_pred cEEEechhhcCCC---------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 152 DIATLIFVLSAIH---------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 152 D~i~~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
|+|++-....... .......+..+...|+|||.+++--+.....
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 9999965222111 0123345556678899999999877665443
No 192
>KOG1661|consensus
Probab=98.69 E-value=8.4e-08 Score=70.68 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=75.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-C-CccEEEEEeCCHHHHHHHHhCCccc-----------CCCceEEeccCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-S-KICYIHACDISPRAVNFFKLNPLYD-----------ASKMNVFPCDVTEDD 141 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~-~~~~v~~~D~s~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~~ 141 (218)
.+..|+.++||+|+|+|.++..++.. + +.....|+|.-++.++.++++.... -.++.++.+|...
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-- 155 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-- 155 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc--
Confidence 56789999999999999999888743 2 3334589999999999999885321 1467788888766
Q ss_pred cccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 142 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......+||.|.+..... .+.+.+...|++||.+++.-
T Consensus 156 --g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 156 --GYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --cCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence 233345899999874322 34455667889999888854
No 193
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.67 E-value=1.8e-07 Score=73.17 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=59.9
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..++.++++|+.+. .++ .+|.|++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~----~~~--~~d~Vv~ 97 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKV----DLP--EFNKVVS 97 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccC----Cch--hceEEEE
Confidence 4567899999999999999999875 4899999999999999987653 35799999998763 222 4788887
Q ss_pred chh
Q psy1107 157 IFV 159 (218)
Q Consensus 157 ~~~ 159 (218)
+-.
T Consensus 98 NlP 100 (258)
T PRK14896 98 NLP 100 (258)
T ss_pred cCC
Confidence 544
No 194
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.66 E-value=8.3e-08 Score=69.05 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc-ccEEEe
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS-VDIATL 156 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~ 156 (218)
.|+|+.||.|..++++|..+. +|+++|+++..++.++.++..++ .++.++++|+.+... .+.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hccccccccEEEE
Confidence 699999999999999999874 89999999999999999988776 589999999877321 222222 799998
No 195
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.65 E-value=2.7e-07 Score=72.71 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=57.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++.+|||+|||+|.++..++..++ +++++|+++.+++.++++... .++.++++|+.+.. ++.-..+.|+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~----~~~~~~~~vv 110 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD----LSELQPLKVV 110 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC----HHHcCcceEE
Confidence 345678999999999999999998874 899999999999999887542 57999999987732 2211146777
Q ss_pred ec
Q psy1107 156 LI 157 (218)
Q Consensus 156 ~~ 157 (218)
++
T Consensus 111 ~N 112 (272)
T PRK00274 111 AN 112 (272)
T ss_pred Ee
Confidence 64
No 196
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.64 E-value=5.7e-08 Score=76.35 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~ 146 (218)
....+....++.+|||+.|=+|.++...+..+. .+++.+|.|..+++.+++++..++ .++.++..|+.+..- ..-
T Consensus 114 nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~-~~~ 191 (286)
T PF10672_consen 114 NRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK-RLK 191 (286)
T ss_dssp HHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-HHH
T ss_pred hHHHHHHHcCCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-HHh
Confidence 334444456789999999999999998877663 489999999999999999976554 468899988865211 101
Q ss_pred CCCcccEEEechh-hcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFV-LSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~-l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..++||+|++--. +.--. ..+...++..+.++|+|||.|++..
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2358999998321 11000 1356678889999999999988765
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.64 E-value=1.1e-07 Score=73.60 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+++.+||-||.|.|..+..+++..+..+++++|+++.+++.|++.+.. ...+++++..|...- .......+||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~--l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF--LKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH--HHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH--HHhccCCccc
Confidence 468899999999999999998776556999999999999999987542 236889998887652 1222222899
Q ss_pred EEEechhhcCCCcc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+.-..-...+.. -...+++.+.+.|+|+|.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99984321111111 13578899999999999998865
No 198
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.64 E-value=9.4e-08 Score=71.58 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=83.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||.|.|-|..++..++++. .+|+.++-++..++.|.-|.-... ..+.++.+|..+ ....+++.+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~~D~sf 206 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDFDDESF 206 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcCCcccc
Confidence 3345689999999999999999999884 499999999999999988743221 357888888766 3456888899
Q ss_pred cEEEechh-hcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFV-LSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+-.-. ++....--...+.++++++|||||.++-..
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 99984211 111110013478899999999999999865
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.64 E-value=6.3e-07 Score=68.43 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHH-HHhCCcccCCCceEEeccCCCccccc-CCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF-FKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~~D~i~ 155 (218)
.++.++||+|||+|.++..+++.+. .+++++|+++.++.. .+.+.. -+.+...|+....... ...-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 4677999999999999999998753 489999999988775 333322 1122333433211100 11112567666
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++ ...++..+.+.|+| |.+++.
T Consensus 149 iS----------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 149 IS----------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ee----------hHhHHHHHHHHhCc-CeEEEE
Confidence 53 22367888899999 766654
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.63 E-value=1.3e-07 Score=77.49 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=69.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccc-ccCC-----------C
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDI-LNQV-----------P 147 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~-----------~ 147 (218)
.++||++||+|.++..++... .+++++|+++.+++.+++++...+ .++.++..|+.+..- .... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 579999999999999888765 389999999999999999876554 478999999865210 0000 0
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+||+|++.-.-. .....++..+. +|+++++++.
T Consensus 286 ~~~~D~v~lDPPR~----G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 286 SYNFSTIFVDPPRA----GLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred CCCCCEEEECCCCC----CCcHHHHHHHH---ccCCEEEEEe
Confidence 22589998742211 11234444443 3788888876
No 201
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.60 E-value=3.5e-07 Score=66.96 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=82.9
Q ss_pred HHHHHHhhh-cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccccc
Q psy1107 68 NEFHEFVNQ-DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 68 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 144 (218)
+.+..++.+ .-.+.++||+-+|+|.++.+.+.++. .+++.+|.+..++..++++.+..+ .+..++..|... ...
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~L~ 107 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--ALK 107 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--HHH
Confidence 344555455 36789999999999999999999985 499999999999999999977666 678888888772 212
Q ss_pred CCCC-CcccEEEechhhcCCCcchH--HHHHHH--HHHhccCCeEEEEEe
Q psy1107 145 QVPH-NSVDIATLIFVLSAIHPNKF--STVVKN--LFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~-~~~D~i~~~~~l~~~~~~~~--~~~l~~--~~~~Lk~gG~li~~~ 189 (218)
.... +.||+|++--.++ . ... ...+.. -..+|+|+|.+++-.
T Consensus 108 ~~~~~~~FDlVflDPPy~-~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 108 QLGTREPFDLVFLDPPYA-K--GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred hcCCCCcccEEEeCCCCc-c--chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 2222 2599999854333 1 122 222333 457899999877744
No 202
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.60 E-value=5.9e-07 Score=66.97 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=83.6
Q ss_pred hhHhhHHHHHHHhhhccC--CCcccchHHHHHHhhhcC---CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHH
Q psy1107 43 NKKKYWDLFYKRNETKFF--KDRNWTVNEFHEFVNQDV---GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVN 117 (218)
Q Consensus 43 ~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~ 117 (218)
+.-+.|+.........-. ....|+.+-+.+...... ...++|||||-+....... .+-..|+.||+++.
T Consensus 10 GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~--- 83 (219)
T PF11968_consen 10 GGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ--- 83 (219)
T ss_pred cCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc---cCceeeEEeecCCC---
Confidence 444555654444322111 123555555555432222 3479999999866554332 23357999998662
Q ss_pred HHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCC-cchHHHHHHHHHHhccCCeE-----EEEEe
Q psy1107 118 FFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGI-----ILFRD 189 (218)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~-----li~~~ 189 (218)
.-.+.++|+.+..++ .-+.++||+|.++-|+.++| |...-.++.++.+.|+|+|. |+++-
T Consensus 84 -----------~~~I~qqDFm~rplp-~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 84 -----------HPGILQQDFMERPLP-KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred -----------CCCceeeccccCCCC-CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 345677888774321 12356899999999999998 67788999999999999999 77653
No 203
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.58 E-value=1.6e-07 Score=72.53 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCcEEEEecCC--CchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC--Cccc
Q psy1107 79 GEGVLLEVGCG--VGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH--NSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG--~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~--~~~D 152 (218)
.-.+.|||||| +-....++++. .|.++|+.+|.++.++..++......+ ....++..|+.+..-...-+. +-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 56899999999 44567777655 788999999999999999888755443 248899999988642211000 1122
Q ss_pred -----EEEechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 153 -----IATLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 153 -----~i~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
.+++..+++++++ ++...++..+...|-||.+|+++.....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 5666778999986 7899999999999999999999876544
No 204
>KOG1663|consensus
Probab=98.56 E-value=5.9e-07 Score=67.31 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcc--cccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDD--ILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~~~~ 149 (218)
.....+.++||+|.=+|..+..+|...| ..+|+++|+++...+.+.+..+..+ .++.+++++..+.- +......+
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 4456788999999999999988887754 4699999999999999977644333 67889888765531 11233567
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+||+++.- +.- ++......++.+++|+||.+++-
T Consensus 149 tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEe
Confidence 99999973 332 45557889999999999988873
No 205
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.56 E-value=4.3e-08 Score=81.16 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..-.++||+|||+|.++..+.+++-. .++..-|..+..+..|.++- +.....-+. ...++++++.||+|.|
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~--s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLG--SQRLPFPSNAFDMVHC 187 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC------cchhhhhhc--cccccCCccchhhhhc
Confidence 34468899999999999999887521 12222244455666666541 111111110 1147899999999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
...+....+.+ ..++-++-|+|+|||+++++....+
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 88766554332 4577889999999999999775544
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.56 E-value=2.7e-07 Score=75.29 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=68.6
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-C---C---C-----
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN-Q---V---P----- 147 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~---~---~----- 147 (218)
.+|||++||+|.++..++... .+++++|+++.+++.+++++...+ .++.++..|+.+..... . + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 479999999999999888765 389999999999999999876555 47899999886521100 0 1 0
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+|+|++.-.=. .....++..+ ++|+++++++.
T Consensus 277 ~~~~d~v~lDPPR~----G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 277 SYNCSTIFVDPPRA----GLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred cCCCCEEEECCCCC----CCcHHHHHHH---HcCCcEEEEEc
Confidence 11379988742211 1123444433 34788888876
No 207
>KOG1709|consensus
Probab=98.55 E-value=1e-06 Score=65.26 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=83.5
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.+||++|.|.|.....+.++.|. +-+.++..+.+++..+........++..+.+-..+ ....++++.||-|+.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD--vl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED--VLNTLPDKHFDGIYY 175 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHh--hhccccccCcceeEe
Confidence 478899999999999999888777665 77789999999999998865555677777765544 345678889999986
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
...-.+. ++...+.+.+.++|||+|.+-+-
T Consensus 176 DTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 4322222 67888899999999999987663
No 208
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=6.5e-07 Score=71.80 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=88.1
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
++....++.+|||+-+|.|.+++.+|..+.. .|+++|++|.+++.+++++..+. ..+..+++|.... ....+.
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev----~~~~~~ 256 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV----APELGV 256 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh----hhcccc
Confidence 3344567899999999999999999988753 59999999999999999977655 3477888988762 222257
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
+|-|+++.. .....++..+.+.+++||.+-+..+...+.
T Consensus 257 aDrIim~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 257 ADRIIMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CCEEEeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 999997532 345678899999999999999988776655
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.54 E-value=3.1e-07 Score=75.13 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred cEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|||+.||+|..++.++...+ ..+|+++|+++.+++.+++|.+.++ .++.+.+.|+.... ......||+|.+.-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC
Confidence 5899999999999999998732 2489999999999999999876554 35778888876521 11124799998732
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.....++..+.+.+++||+|++..
T Consensus 123 ------fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 ------FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ------CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 2334568899999999999999974
No 210
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.53 E-value=2.2e-07 Score=73.78 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=59.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+|||||||+|.++..++..+ .+++++|+++.+++.++++.... ..++.++++|+...+ + ..+|.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~----~--~~~d~ 104 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE----F--PYFDV 104 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc----c--cccCE
Confidence 34567899999999999999998875 48999999999999999875433 257999999997632 2 25788
Q ss_pred EEech
Q psy1107 154 ATLIF 158 (218)
Q Consensus 154 i~~~~ 158 (218)
|+++-
T Consensus 105 VvaNl 109 (294)
T PTZ00338 105 CVANV 109 (294)
T ss_pred EEecC
Confidence 88743
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.52 E-value=4.1e-07 Score=71.94 Aligned_cols=81 Identities=15% Similarity=0.038 Sum_probs=62.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++..+||++||.|..+..+++..+ ..+|+|+|.++.+++.++++... ..++.+++.|+.+......-.-.++|.|+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 35677999999999999999998864 67999999999999999987655 56899999988774211111112799998
Q ss_pred ech
Q psy1107 156 LIF 158 (218)
Q Consensus 156 ~~~ 158 (218)
+..
T Consensus 96 ~DL 98 (296)
T PRK00050 96 LDL 98 (296)
T ss_pred ECC
Confidence 843
No 212
>KOG2730|consensus
Probab=98.51 E-value=2.2e-07 Score=68.91 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
....|+|.-||.|..+++++..++ .|+++|+++..+..|+.+++.++ .++.|+++|+.+....+.+....+|+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 567899999999999999999885 89999999999999999998776 68999999988753333343334666665
Q ss_pred c
Q psy1107 157 I 157 (218)
Q Consensus 157 ~ 157 (218)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 3
No 213
>KOG4589|consensus
Probab=98.51 E-value=3.7e-07 Score=66.12 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=76.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-cCCCcc----cccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-DVTEDD----ILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~----~~~~~~~ 148 (218)
....|+.+|||+||-+|.|+.-..+. +|+.-+.|+|+-.-. -+..+.++++ |+++.. +.+.+|+
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 44578999999999999999777766 588899999983321 1123444444 777653 3456777
Q ss_pred CcccEEEechhhc--CCCc-------chHHHHHHHHHHhccCCeEEEEEecCCCchhhhcc
Q psy1107 149 NSVDIATLIFVLS--AIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200 (218)
Q Consensus 149 ~~~D~i~~~~~l~--~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~~~ 200 (218)
...|+|++.+.-. .+.. +....++.-+...++|+|.+++--|...+...+..
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r 195 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQR 195 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHH
Confidence 8899998743211 1111 11224444556778999999998888777665443
No 214
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.50 E-value=1.1e-06 Score=69.25 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=76.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceE-EeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNV-FPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...+.+|||+|||+|.-+..+....+ ..+++++|.|+.+++.++............ ....+.. ...+-...|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR----DFLPFPPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc----ccccCCCCcEE
Confidence 34677999999999987765555433 348999999999999998875543211111 0111111 11111234999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
++.++|..++......+++.+.+.+.+ .|++++.+.....
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 999999999876777888888777666 8888887655543
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=7.7e-07 Score=74.11 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=87.6
Q ss_pred hhccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCce
Q psy1107 56 ETKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMN 131 (218)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~ 131 (218)
...|++.+....+.+...+ ....++.++||+-||.|.++..++... .+|+|+|+++.+++.|+.+++.++ .|++
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEE
Confidence 3456666655555554444 344567899999999999999999655 599999999999999999988776 6799
Q ss_pred EEeccCCCcccccCC-CCCcccEEEechhhcCCCcchHH-HHHHHHHHhccCCeEEEEEe
Q psy1107 132 VFPCDVTEDDILNQV-PHNSVDIATLIFVLSAIHPNKFS-TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~-~~~~~D~i~~~~~l~~~~~~~~~-~~l~~~~~~Lk~gG~li~~~ 189 (218)
|...+..+.. ... ....+|.|+..- |..... .+++.+ ..++|..+++++.
T Consensus 345 f~~~~ae~~~--~~~~~~~~~d~VvvDP-----PR~G~~~~~lk~l-~~~~p~~IvYVSC 396 (432)
T COG2265 345 FIAGDAEEFT--PAWWEGYKPDVVVVDP-----PRAGADREVLKQL-AKLKPKRIVYVSC 396 (432)
T ss_pred EEeCCHHHHh--hhccccCCCCEEEECC-----CCCCCCHHHHHHH-HhcCCCcEEEEeC
Confidence 9988876632 122 234789998731 213333 444444 4458888888887
No 216
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.8e-06 Score=70.50 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred hhhcCCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCC-C
Q psy1107 74 VNQDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPH-N 149 (218)
Q Consensus 74 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~-~ 149 (218)
+....++.+|||+|++.|.-+.++++...+ ..|+++|.++..+.....+....+ .++...+.|..... ...+. .
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~--~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA--ELLPGGE 228 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc--ccccccC
Confidence 366778899999999999999999987543 456999999999999999987766 56677777765421 12222 2
Q ss_pred cccEEEech------hhcCCC-------cc-------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIF------VLSAIH-------PN-------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||.|++-. +++--| +. .+..++..+.++|||||.|+.+.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 599998822 221111 11 14588999999999999999865
No 217
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.46 E-value=1.9e-06 Score=67.15 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC---------------------------------c
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP---------------------------------L 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~---------------------------------~ 124 (218)
....+||-.|||-|.++..++..+ ..+.|.|.|.-|+-..+-.. .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 446799999999999999999986 58999999988754433210 0
Q ss_pred --------ccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 125 --------YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 125 --------~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..+.+++...+|+.+.-. .....++||.|+..+.+... .+....++.+.++|||||+++=
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~-~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYG-PDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecC-CcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe
Confidence 001245555555554110 11113689999988877766 4788999999999999996664
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=6.1e-07 Score=66.67 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=78.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc----cCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~ 149 (218)
....++..|+|+|+-+|.|+..+++. ++...|+++|+.+-. ...++.++++|++..+.. ..+...
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 33467899999999999999888776 344469999996631 124699999999987532 234555
Q ss_pred cccEEEechhh--------cCCC-cchHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 150 SVDIATLIFVL--------SAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 150 ~~D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
.+|+|++-..- .|.- .......+..+..+|+|||.+++-.+.+.+...
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~ 167 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED 167 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH
Confidence 67999973321 1110 011335566678899999999998887777554
No 219
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.45 E-value=8.8e-07 Score=68.52 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCCcEEEEecCCCchhHHHHh-hcCCccEEEEEeCCHHHHHHHHhCCccc----------------C-------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLL-SWSKICYIHACDISPRAVNFFKLNPLYD----------------A------------- 127 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~-~~~~~~~v~~~D~s~~~~~~~~~~~~~~----------------~------------- 127 (218)
.++.++||||||+-.....-+ ... -+|+..|+++..++..++..... +
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 457799999999865432222 222 37999999998887665532100 0
Q ss_pred CCc-eEEeccCCCcccccC-CC-CCcccEEEechhhcCCC--cchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 128 SKM-NVFPCDVTEDDILNQ-VP-HNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 128 ~~i-~~~~~d~~~~~~~~~-~~-~~~~D~i~~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
..+ .++.||+.+.....+ .. ...+|+|++.+.++... .+.....++++.++|||||.|++...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 112 377889988543222 11 12599999998888665 35678999999999999999999764
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.44 E-value=1.1e-06 Score=70.65 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=70.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-------CCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-------SKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-------~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~ 144 (218)
....++.+|+|++||+|.++..+... .+...++|+|+++.++..++.++...+ .+..+...|......
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~-- 119 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDK-- 119 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHS--
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccc--
Confidence 34456678999999999998888763 255699999999999998876543222 234577777655321
Q ss_pred CCCCCcccEEEechhhcCC--C---------------c--chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIFVLSAI--H---------------P--NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~--~---------------~--~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......||+|+++-.+... . + ..-..++..+.+.|++||.+.+.-
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1124589999995433322 0 0 112257788999999999876643
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=98.41 E-value=3e-06 Score=65.95 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-----cCCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-----DASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+++.+||=+|.|.|..++++++. +. +++.+|+++.+++.+++.... ..+++.++.. + .....++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~------~~~~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L------LDLDIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h------hhccCCcCC
Confidence 56789999999999999999976 44 999999999999999995432 2245555431 1 111235899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+|++-.. + ...+.+.+++.|+|||+++.-
T Consensus 142 VIIvDs~----~---~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQE----P---DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCC----C---ChHHHHHHHHhcCCCcEEEEC
Confidence 9997531 1 246778899999999988873
No 222
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.41 E-value=4.3e-06 Score=66.32 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-cc
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LN 144 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 144 (218)
+..++.+.+ ...++..++|.-+|.|..+..++...+..+++|+|.++.+++.+++.......++.+++.++.+... ..
T Consensus 8 ll~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 333444442 3456779999999999999999987655899999999999999998765555678888888776321 11
Q ss_pred CCCCCcccEEEe
Q psy1107 145 QVPHNSVDIATL 156 (218)
Q Consensus 145 ~~~~~~~D~i~~ 156 (218)
.....++|.|++
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 123346888877
No 223
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=1.8e-06 Score=63.15 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=81.7
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.-.+++|||+|+|+|..++..+..+. ..++..|+.+..+....-|++.++..+.+...|... .+..+|++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence 34689999999999999999888875 489999999999888888888888888888887643 3457999999
Q ss_pred chhhcCCCcchHHHHHHHHHHhccC-CeEEEEEecCCCchh
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKS-GGIILFRDYGLHDMA 196 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~-gG~li~~~~~~~~~~ 196 (218)
..++..-+ ...+++. +...|.. |-.+++.+.++....
T Consensus 149 gDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 149 GDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 99876553 4556666 5555555 445555665544433
No 224
>KOG3987|consensus
Probab=98.36 E-value=8.2e-07 Score=65.43 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=75.7
Q ss_pred chHHHHHHhhh-----cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEE-eccCCC
Q psy1107 66 TVNEFHEFVNQ-----DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVF-PCDVTE 139 (218)
Q Consensus 66 ~~~~~~~~~~~-----~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~-~~d~~~ 139 (218)
...++..++.. ...+.++||+|+|.|..+..++... -+|++.+.|..|....+.+. ..++ ..+..+
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~------ynVl~~~ew~~ 165 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN------YNVLTEIEWLQ 165 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC------Cceeeehhhhh
Confidence 34566666522 2346899999999999999988765 37999999999999988651 1111 111111
Q ss_pred cccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccC-CeEEEEE
Q psy1107 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKS-GGIILFR 188 (218)
Q Consensus 140 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~-gG~li~~ 188 (218)
.+-++|+|.|..++.-- .++-.+++.+..+|.| +|.+++.
T Consensus 166 -------t~~k~dli~clNlLDRc--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 -------TDVKLDLILCLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -------cCceeehHHHHHHHHhh--cChHHHHHHHHHHhccCCCcEEEE
Confidence 11279999998887633 2667899999999998 9988874
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.36 E-value=1.2e-05 Score=60.28 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=75.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....++.+||-+|..+|.....++.- ++...|++++.|+.....+...++. -.|+--+..|+..+.....+-+ ..|+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~~Y~~lv~-~VDv 146 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPEKYRMLVE-MVDV 146 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGGGGTTTS---EEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChHHhhcccc-cccE
Confidence 44568899999999999988888765 5577999999999664444332221 1578888889888654334434 8999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|++.- ..|+..+.+...+...||+||.+++.-
T Consensus 147 I~~DV----aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 147 IFQDV----AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEE-----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecC----CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99732 234677778888999999999998854
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=62.88 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=78.7
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
..+.|+|+|+|.++...+... -+|++++-+|.....|.++....+ .++.++.+|+.+- .+ ...|+|+|...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y----~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY----DF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc----cc--cccceeHHHHh
Confidence 789999999999997777653 399999999999999999977655 6899999998773 33 25799999665
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-..+-.+.+..+++.+.+.||-.+.++-
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 4444345667888888889998887764
No 227
>KOG0820|consensus
Probab=98.34 E-value=1.9e-06 Score=66.08 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=63.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+...+...|||+|.|+|.++..+.+.+ .+|+++++++.++.....+....+ ..+.++++|+...++ | .||
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P--~fd 125 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----P--RFD 125 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----c--ccc
Confidence 566788999999999999999999987 489999999999999999877666 679999999987432 2 588
Q ss_pred EEEe
Q psy1107 153 IATL 156 (218)
Q Consensus 153 ~i~~ 156 (218)
++++
T Consensus 126 ~cVs 129 (315)
T KOG0820|consen 126 GCVS 129 (315)
T ss_pred eeec
Confidence 8887
No 228
>KOG2352|consensus
Probab=98.34 E-value=4.7e-06 Score=69.04 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=86.3
Q ss_pred CCCc-EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~-~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+.. ++|-+|||.-.++..+.+.+- ..++.+|+|+.+++..............+...|+.. ..+++.+||+|+.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~----l~fedESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ----LVFEDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccCCcceEEEEecchh----ccCCCcceeEEEe
Confidence 3444 999999999999988887764 489999999999999988754334567888888887 6788889999999
Q ss_pred chhhcCCCcc-h-------HHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPN-K-------FSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~-~-------~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
-..++++..+ + ....+..+.+++++||+++...++
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 8887776422 1 235677889999999998887763
No 229
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1e-05 Score=62.63 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=60.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
+...++..|||||+|.|.++..+++.+. +|+++++++..+...++... ...++.++++|+...++..-. .++.|
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~---~~~~v 99 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA---QPYKV 99 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc---CCCEE
Confidence 4445578999999999999999999874 89999999999999998865 346899999999885432111 35666
Q ss_pred Ee
Q psy1107 155 TL 156 (218)
Q Consensus 155 ~~ 156 (218)
++
T Consensus 100 Va 101 (259)
T COG0030 100 VA 101 (259)
T ss_pred EE
Confidence 65
No 230
>KOG1269|consensus
Probab=98.33 E-value=9.1e-07 Score=71.93 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=87.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++..++|+|||.|.....++... .+.++|+|+++..+..+........ .+..+..+|+.+ .+++++.||
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~----~~fedn~fd 180 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK----MPFEDNTFD 180 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc----CCCCccccC
Confidence 445666789999999999998887653 4689999999988888776643222 334446666655 578888999
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.+.+..+..|.+ +...++.+++++++|||++++.++.
T Consensus 181 ~v~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHH
Confidence 999999999996 7888999999999999999987644
No 231
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.30 E-value=1.6e-06 Score=66.19 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=78.4
Q ss_pred chHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC
Q psy1107 66 TVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 66 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 145 (218)
+...+..+....+++.+|+|||||.-.++..+....++..|+++|++...++.........+.+..+...|+.. .
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~-----~ 166 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLS-----D 166 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTT-----S
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeec-----c
Confidence 34445555566677899999999999999999888778899999999999999998766666777788888765 3
Q ss_pred CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 146 VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 146 ~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.+....|+.++.-+++.+........++. ...+ +...++++|+.....
T Consensus 167 ~~~~~~DlaLllK~lp~le~q~~g~g~~l-l~~~--~~~~~vVSfPtrSL~ 214 (251)
T PF07091_consen 167 PPKEPADLALLLKTLPCLERQRRGAGLEL-LDAL--RSPHVVVSFPTRSLG 214 (251)
T ss_dssp HTTSEESEEEEET-HHHHHHHSTTHHHHH-HHHS--CESEEEEEEES----
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchHHHH-HHHh--CCCeEEEeccccccc
Confidence 34557999999888877632122122222 2222 333566666655554
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.29 E-value=3.9e-06 Score=72.24 Aligned_cols=81 Identities=21% Similarity=0.115 Sum_probs=54.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcCC--------ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-CCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSK--------ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN-QVPH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~--------~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~ 148 (218)
...+|||+|||+|.++..++...+ ...++++|+++.++..++.+....+ ..+.+.+.|........ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999988876542 2578999999999999987754332 23444444443321111 1112
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+.||+|+++-.
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 47999999543
No 233
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.27 E-value=2.3e-05 Score=55.96 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=70.2
Q ss_pred EEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccCCC-ceEEeccCCCcccccCCCC-CcccEEEechh
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASK-MNVFPCDVTEDDILNQVPH-NSVDIATLIFV 159 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~-~~~D~i~~~~~ 159 (218)
++|+|||+|... .+....+. ..++++|+++.++..+.......... +.+...|.... ..++.. ..+|++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeeee
Confidence 999999999976 33333222 37888999999998855543321111 56777766542 123444 47999943333
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.++.. ....+..+.+.++|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44442 678999999999999999997755443
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.26 E-value=3.4e-06 Score=63.39 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=63.4
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc----------ccCCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL----------YDASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~----------~~~~~i~~~~~d~~~~~~~~ 144 (218)
....+....+|+|||.|......+...+-.+.+|+++.+...+.|..... ....++.+.++|+.+.+...
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 34567889999999999998888766543469999999988877765311 12356788888887754321
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.+ -...|+|+++... +++ +....+......||+|-+++.
T Consensus 118 ~~-~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 118 DI-WSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HH-GHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred hh-hcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEE
Confidence 11 0246999997653 343 444555677778899987765
No 235
>KOG2915|consensus
Probab=98.24 E-value=8.9e-06 Score=62.50 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=78.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCccc--CCCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYD--ASKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....|+.+|||-|.|+|.++..+++. +|..+++.+|+.....+.|.+-++.. ++++.+.+.|+....+ ...+..+
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~a 178 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKA 178 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--ccccccc
Confidence 55689999999999999999999877 68889999999988888888776654 4799999999988432 2224678
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCe-EEEE
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGG-IILF 187 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG-~li~ 187 (218)
|.|++. +| .+...+..+..+||.+| +|+.
T Consensus 179 DaVFLD-----lP--aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 179 DAVFLD-----LP--APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEe
Confidence 999863 33 33445666777887766 4443
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.21 E-value=9.2e-06 Score=63.52 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCchhHHHHhh-c-CCccEEEEEeCCHHHHHHHHhCCc---ccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLS-W-SKICYIHACDISPRAVNFFKLNPL---YDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~-~-~~~~~v~~~D~s~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.+.+|+=||||+=.++..+.. . ++...+.++|+++.+++.+++... ....++.|+..|+.+.. ..-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~----~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT----YDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc----cccccCCE
Confidence 356999999998777655543 2 456789999999999999987654 23467899999986632 12237999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+....+. +..+....++..+.+.++||..+++..
T Consensus 196 V~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 98865432 333578899999999999999999975
No 237
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=1.3e-05 Score=71.17 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcC------------------------------------------CccEEEEEeCCHHH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWS------------------------------------------KICYIHACDISPRA 115 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~------------------------------------------~~~~v~~~D~s~~~ 115 (218)
.++..++|++||+|.+.++.+... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456899999999999998887521 11369999999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcC-CC-cchHHHHHHHHHHhc---cCCeEEEEE
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA-IH-PNKFSTVVKNLFIML---KSGGIILFR 188 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~L---k~gG~li~~ 188 (218)
++.|+.++...+ ..+.+.++|+.+.. .+...+++|+|+++-.... +. ..+...+...+.+.+ .+|+.+++.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~--~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLK--NPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcc--cccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999999977655 35889999987732 1222347999998754321 11 123334444444444 388888776
Q ss_pred ec
Q psy1107 189 DY 190 (218)
Q Consensus 189 ~~ 190 (218)
..
T Consensus 347 t~ 348 (702)
T PRK11783 347 SS 348 (702)
T ss_pred eC
Confidence 63
No 238
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.15 E-value=8.9e-06 Score=64.42 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
....++..|||+|++.|.-+..++.... ...+++.|++...+...+.+....+ .++.....|..... .......||
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~--~~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD--PKKPESKFD 158 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--HHHHTTTEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--ccccccccc
Confidence 5567788999999999999998887743 5699999999999999998876665 56677666665421 112223599
Q ss_pred EEEech------hhcCCCc-------c-------hHHHHHHHHHHhc----cCCeEEEEEe
Q psy1107 153 IATLIF------VLSAIHP-------N-------KFSTVVKNLFIML----KSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~------~l~~~~~-------~-------~~~~~l~~~~~~L----k~gG~li~~~ 189 (218)
.|++-. ++..-|. + .+..+++.+.+.+ ||||.++.+.
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 998822 2222221 1 1458889999999 9999999865
No 239
>KOG2187|consensus
Probab=98.11 E-value=1.5e-05 Score=66.39 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=62.3
Q ss_pred hccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..||+.+.-..+.+...+ +..+.+..++|++||+|.++..+++.. .+|+|+++++.+++.|..++..++ .|..|
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceee
Confidence 344455444444444444 556677899999999999999888754 499999999999999999988776 78999
Q ss_pred EeccCCC
Q psy1107 133 FPCDVTE 139 (218)
Q Consensus 133 ~~~d~~~ 139 (218)
+++-..+
T Consensus 436 i~gqaE~ 442 (534)
T KOG2187|consen 436 IVGQAED 442 (534)
T ss_pred eecchhh
Confidence 9995444
No 240
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.09 E-value=7.7e-06 Score=66.82 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred hccCCCcccchHHHHHHh---hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceE
Q psy1107 57 TKFFKDRNWTVNEFHEFV---NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNV 132 (218)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~ 132 (218)
..|++.+......+...+ ....+. .+||+.||.|.++..++... .+|+|+|+++.+++.|+.++..++ .|+.|
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 455565555555444443 222333 89999999999999999876 499999999999999999987766 68999
Q ss_pred EeccCC
Q psy1107 133 FPCDVT 138 (218)
Q Consensus 133 ~~~d~~ 138 (218)
...+..
T Consensus 249 ~~~~~~ 254 (352)
T PF05958_consen 249 IRGDAE 254 (352)
T ss_dssp EE--SH
T ss_pred EEeecc
Confidence 887654
No 241
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.06 E-value=1.5e-05 Score=55.84 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch---------HHHHHH
Q psy1107 105 YIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK---------FSTVVK 173 (218)
Q Consensus 105 ~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~---------~~~~l~ 173 (218)
+|+++|+.+.+++.++++....+ .++.+++.+-.+. ...++.+++|+++.+ +.++|..| ....++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l--~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL--DEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG--GGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH--HhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999866543 4688877765442 233444578988854 45666433 457888
Q ss_pred HHHHhccCCeEEEEEecCCCchhh
Q psy1107 174 NLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 174 ~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
.+.++|+|||++.+..|.+.+.+.
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~ 100 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGK 100 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHH
T ss_pred HHHHhhccCCEEEEEEeCCCCCCH
Confidence 999999999999999998877653
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.03 E-value=8.6e-06 Score=57.73 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCC
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTE 139 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~ 139 (218)
++||+|||.|..+..++..++..+++++|+++.+.+.++++...++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999988887799999999999999998865443 457777766554
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.98 E-value=2e-05 Score=59.26 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=62.5
Q ss_pred EEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCc-ccEEEechh
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNS-VDIATLIFV 159 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~-~D~i~~~~~ 159 (218)
|.||||..|.+...+++.+...+++++|+++..++.|+++....+ .++.+..+|... .++.+. .|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence 689999999999999999876689999999999999999866544 568888888654 333333 677766432
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-. .....++......+++...|++
T Consensus 76 GG----~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 76 GG----ELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp -H----HHHHHHHHHTGGGGTT--EEEE
T ss_pred CH----HHHHHHHHhhHHHhccCCeEEE
Confidence 11 2344555555555544444444
No 244
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.00013 Score=53.92 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=79.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
....++.+||-+|+.+|.....++.-.+...+++++.|+....-....+... .|+.-+..|+..+.-...+-+ ..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve-~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKPEKYRHLVE-KVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCcHHhhhhcc-cccEE
Confidence 4467889999999999999888887666678999999998766655543322 577777788877532222323 68999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+.. -..|+...-+...+...||+||.+++.
T Consensus 150 y~D----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQD----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEe----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 862 224567777889999999999977774
No 245
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00011 Score=59.66 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=78.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc--------------------------------c-------EEEEEeCCHHH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI--------------------------------C-------YIHACDISPRA 115 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~--------------------------------~-------~v~~~D~s~~~ 115 (218)
....++..++|.=||+|.+.++.|...++ + .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 44456679999999999999999876532 1 27799999999
Q ss_pred HHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEechhhc-CCC-cc----hHHHHHHHHHHhccCCeEEEE
Q psy1107 116 VNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS-AIH-PN----KFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 116 ~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~-~~~-~~----~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++.|+.|+...+ ..|.|.+.|+.... .++ ..+|+|+|+-... -+. .. ....+.+.+.+.++.-+.+++
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~--~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLK--EPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCC--CCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999977655 57999999998732 222 5799999854321 111 11 233455566677777777777
Q ss_pred Ee
Q psy1107 188 RD 189 (218)
Q Consensus 188 ~~ 189 (218)
..
T Consensus 343 tt 344 (381)
T COG0116 343 TT 344 (381)
T ss_pred Ec
Confidence 65
No 246
>KOG3115|consensus
Probab=97.93 E-value=3.9e-05 Score=56.53 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=68.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------C-CCceEEeccCCCcccccCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------A-SKMNVFPCDVTEDDILNQV 146 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------~-~~i~~~~~d~~~~~~~~~~ 146 (218)
....+...+.|||||.|.++..++..+|+.-+.|++|.-.+-++.+.++... . .|+.+...+..... +.-+
T Consensus 56 ~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l-pn~f 134 (249)
T KOG3115|consen 56 RALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL-PNFF 134 (249)
T ss_pred hhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc-cchh
Confidence 3344567889999999999999999999999999998877776666653211 1 34555555432210 0112
Q ss_pred CCCcccEEEechhhcCCCc------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 147 PHNSVDIATLIFVLSAIHP------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 147 ~~~~~D~i~~~~~l~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+...-++..+.--|+.. -....++.+..-+|++||.++...
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222222222111111110 002256778888999999998764
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.93 E-value=4.2e-06 Score=56.24 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=42.6
Q ss_pred EEecCCCchhHHHHhhcCCc---cEEEEEeCCHH---HHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 84 LEVGCGVGNFIFPLLSWSKI---CYIHACDISPR---AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 84 LDiGcG~G~~~~~~~~~~~~---~~v~~~D~s~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
||+|+..|..+..+++..+. .+++++|..+. ..+..++ .....++.++.++..+. ...++..++|+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~--l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF--LPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHH--HHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH--HHHcCCCCEEEEEEC
Confidence 68999999998888765432 26999999984 3333322 12235788999887542 123334589999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. |. .+.....+..+.+.|+|||++++-|+
T Consensus 77 g~--H~-~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 77 GD--HS-YEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CC--CC-HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 31 11 23566778889999999999888653
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.88 E-value=0.00011 Score=58.95 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=61.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..++.++||+||++|.++..+++.+ .+|+++|..+-.-. .. ..+++.....|.... .+ +.+.+|.++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-L~-----~~~~V~h~~~d~fr~---~p-~~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-LM-----DTGQVEHLRADGFKF---RP-PRKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-hh-----CCCCEEEEeccCccc---CC-CCCCCCEEEE
Confidence 3578899999999999999999887 59999996542211 11 225677776665441 11 1457999998
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSG 182 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~g 182 (218)
-.+ +.+.++...+.++|..|
T Consensus 277 Dmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc------cCHHHHHHHHHHHHhcC
Confidence 544 24567777788888665
No 249
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.85 E-value=4e-05 Score=54.31 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+...|+|+|||.|.++..++.. .++.+|+++|.++..++.+..+..... .++.+...++... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE-----SSSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh-----cccC
Confidence 56789999999999999999871 266899999999999888887754332 3445544443321 1133
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHH
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFI 177 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~ 177 (218)
..++++..+.-..+ -..+++.+.+
T Consensus 99 ~~~~~vgLHaCG~L----s~~~l~~~~~ 122 (141)
T PF13679_consen 99 PPDILVGLHACGDL----SDRALRLFIR 122 (141)
T ss_pred CCeEEEEeecccch----HHHHHHHHHH
Confidence 56777765544433 2344444444
No 250
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.83 E-value=0.00038 Score=54.62 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=65.7
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...++..|||+|+|.|.++..+++.+ .+++++|+++...+..++... ...++.++..|+..-+....+. .....|+
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~~-~~~~~vv 102 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLLK-NQPLLVV 102 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHCS-SSEEEEE
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHhhc-CCceEEE
Confidence 34478999999999999999999887 599999999999999998765 4478999999998744322121 2334555
Q ss_pred echhhcCCCcchHHHHHHHHHH
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFI 177 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~ 177 (218)
++ +|...-..++.++..
T Consensus 103 ~N-----lPy~is~~il~~ll~ 119 (262)
T PF00398_consen 103 GN-----LPYNISSPILRKLLE 119 (262)
T ss_dssp EE-----ETGTGHHHHHHHHHH
T ss_pred EE-----ecccchHHHHHHHhh
Confidence 43 232334455555555
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.76 E-value=8.8e-05 Score=55.39 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=59.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCC----C
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVP----H 148 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~----~ 148 (218)
.-++..|+|+|.-.|..+..+|.. ++.++|+++|++...........-....++.++++|..+.+...... .
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 346789999999999888777643 36789999999654332221111001268999999988765433321 1
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
....+|+.- . +|.. +.....++....++++|+++++-|
T Consensus 110 ~~~vlVilD-s-~H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVILD-S-SHTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEEC-C-CccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 233455543 2 2222 466778888999999999999966
No 252
>KOG3201|consensus
Probab=97.71 E-value=1.9e-05 Score=56.11 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCCcccccCCCCCccc
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..+..|||+|.| +|..+..+|...|...|...|-++.++...+.....+ ...+.....+.... .+......||
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 356899999999 5555666666677789999999999988877542111 11222222222111 0122234899
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|+|...+-.- +-...+++.+..+|+|.|.-++....+.+
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99998754322 45567888899999999987776644444
No 253
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00079 Score=52.92 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=62.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-cCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~~D 152 (218)
....++...+|.--|.|..+..+++.++ ..+++++|-++.+++.|++.....+.++.+++.++.+.... .....+++|
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 3455678999999999999999998876 34699999999999999998776667888888877654221 122234667
Q ss_pred EEEe
Q psy1107 153 IATL 156 (218)
Q Consensus 153 ~i~~ 156 (218)
.|++
T Consensus 99 GiL~ 102 (314)
T COG0275 99 GILL 102 (314)
T ss_pred EEEE
Confidence 6665
No 254
>KOG1122|consensus
Probab=97.68 E-value=0.00037 Score=56.98 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=80.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
..+.++-+|||+|+-+|.-+..+|.. .....|++.|.+...+.....++...+ .+......|...... ..++. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-KEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-cccCc-ccc
Confidence 55678899999999999988888765 223589999999999999988876655 455555566654210 12444 899
Q ss_pred EEEechhhcC--CC--c----------------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSA--IH--P----------------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~--~~--~----------------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-|++-...+. +- + ..+++++..+..++++||+|+.+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9987443332 10 0 125688888999999999999865
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00044 Score=52.49 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=71.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.-..++..+||+|+.+|.++-.+.+.+. .+|+++|.....+..-.++ .+.-+.+...|+....- ..+.. ..|++
T Consensus 75 ~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~-~~~~~-~~d~~ 148 (245)
T COG1189 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTP-EDFTE-KPDLI 148 (245)
T ss_pred CcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCH-HHccc-CCCeE
Confidence 3456788999999999999999988875 4999999877665544433 12234444555554211 12222 67888
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.-.+ + -...++..+..+++++|.++..-
T Consensus 149 v~DvSF--I---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 149 VIDVSF--I---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEeeh--h---hHHHHHHHHHHhcCCCceEEEEe
Confidence 875433 2 35678889999999999888754
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.57 E-value=0.00078 Score=54.24 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCC--c------ccCCCceEEeccCCCcccccCCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNP--L------YDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~--~------~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
....++|-+|.|.|--++++.+. | ..+++-+|.+|++++.++.+. . ..+.+++++.-|..+ +..-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---WLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---HHHhhc
Confidence 55679999999999999999865 5 459999999999999998541 1 123567777777654 222333
Q ss_pred CcccEEEechhhcCCCcch-------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNK-------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~-------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..||.|+.... .|+. -..+...+.+.|+++|++++-.
T Consensus 364 ~~fD~vIVDl~----DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLP----DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCC----CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 48999987321 1221 1356677889999999888854
No 257
>KOG1099|consensus
Probab=97.52 E-value=7.8e-05 Score=56.03 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred CcEEEEecCCCchhHHHHhhcC----Cc-----cEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS----KI-----CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQV 146 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~----~~-----~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 146 (218)
-.+++|+|+-+|.|+..+.+.. +. ..++++|+.+-+ --..+.-+++|++... +...|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 4689999999999998877651 11 138999984421 0135677788888753 22346
Q ss_pred CCCcccEEEechh--hcCCCc-------chHHHHHHHHHHhccCCeEEEEEecCCCchhhh
Q psy1107 147 PHNSVDIATLIFV--LSAIHP-------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQM 198 (218)
Q Consensus 147 ~~~~~D~i~~~~~--l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~ 198 (218)
...+.|+|+|.+. +..++. +.+...+.....+|||||.|+.--|..++...+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 6678999999553 222221 123355566678999999999877777775543
No 258
>KOG2198|consensus
Probab=97.52 E-value=0.00049 Score=55.44 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=76.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc----cEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccccc-----
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI----CYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILN----- 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~----~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~----- 144 (218)
....|+.+|||+|+-+|.-+.++.+.... ..+++=|.++..+..........+ .++.+...|+.......
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 55689999999999999999888876432 278888999988888876654333 34555555544322111
Q ss_pred CCCCCcccEEEechhhc------CCC---------------cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIFVLS------AIH---------------PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~------~~~---------------~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
......||-|+|--... ..+ +..+..++....++||+||.|+.+.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 11223689888721111 000 1224578888999999999999876
No 259
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0002 Score=57.18 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCC-Cccc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPH-NSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~-~~~D 152 (218)
....+.+|||+|.|+|.-+...-...|+. +++.++.|+..-+..-...... ......-..|++.. ..+++. ..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d--Rl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED--RLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh--ccCCCccceee
Confidence 34567789999999988775555555544 5666777776544443322111 11111222233322 123332 3677
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..-+-+.. +..+...++.+..++.|||.|++.+-|...
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 777665444332 223445889999999999999999866433
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.49 E-value=0.001 Score=49.94 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC-CcccE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH-NSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~-~~~D~ 153 (218)
...+..+.||||..+.+...+...++...+++.|+++..++.|.++....+ ..+....+|... ++.. ..+|+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCE
Confidence 345556999999999999999999988899999999999999998876544 445555555533 3333 36888
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhcc
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLK 180 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk 180 (218)
|+..++-. .....++++....|+
T Consensus 89 ivIAGMGG----~lI~~ILee~~~~l~ 111 (226)
T COG2384 89 IVIAGMGG----TLIREILEEGKEKLK 111 (226)
T ss_pred EEEeCCcH----HHHHHHHHHhhhhhc
Confidence 87643211 234455555555444
No 261
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=3.9e-05 Score=54.06 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=41.8
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..|.+++.|+|++..+++|+..+.-..+++.+.+.|||||+|.++-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 5677789999999999999998888899999999999999999865
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.42 E-value=0.00061 Score=50.86 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=64.5
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCc--cEEEEEeCCHHHHHHHHhCC--------------------------------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNP-------------------------------- 123 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~~v~~~D~s~~~~~~~~~~~-------------------------------- 123 (218)
..+.++.|.|||+|.++..+.-.... ..+++.|+++.+++.|++|.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999998777654322 38999999999999999874
Q ss_pred ---------ccc--CCCceEEeccCCCcccccCCCC-CcccEEEechhhcCCC-------cchHHHHHHHHHHhccCCeE
Q psy1107 124 ---------LYD--ASKMNVFPCDVTEDDILNQVPH-NSVDIATLIFVLSAIH-------PNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 124 ---------~~~--~~~i~~~~~d~~~~~~~~~~~~-~~~D~i~~~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~ 184 (218)
... .......+.|+++.......+. ...|+|+..-...++. .+-...++..+..+|-+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 011 1235566777777433211222 1359988733322221 12356899999999966666
Q ss_pred EEEEe
Q psy1107 185 ILFRD 189 (218)
Q Consensus 185 li~~~ 189 (218)
+.+.+
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66654
No 263
>KOG1596|consensus
Probab=97.40 E-value=0.0012 Score=50.09 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=72.3
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHH----HHHHHhCCcccCCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRA----VNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~----~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
.+..|+.+||-+|+++|.....+..- +|...|++++.|... +.+|+++ .|+.-+.-|++.+.... ..-+
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~KYR-mlVg 225 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAKYR-MLVG 225 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchhee-eeee
Confidence 56789999999999999887777654 688899999998854 4444443 45666666666632111 1112
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
-.|+|++. -.+|+..+.+...+...||+||-++++-
T Consensus 226 mVDvIFaD----vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFAD----VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEecc----CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 46777752 2234566666788899999999999854
No 264
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.36 E-value=0.0018 Score=53.27 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCchhHHHHhhc---------------CCccEEEEEeCCHHHHHHHHhCCcc--------------cCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW---------------SKICYIHACDISPRAVNFFKLNPLY--------------DASK 129 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~---------------~~~~~v~~~D~s~~~~~~~~~~~~~--------------~~~~ 129 (218)
+..+|+|+|||+|..+..+... .|..+++.-|.-..-....-..... .+.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999887665432 1345666666443222222221110 0111
Q ss_pred ceEE---eccCCCcccccCCCCCcccEEEechhhcCCC--cc----------------------------------hHHH
Q psy1107 130 MNVF---PCDVTEDDILNQVPHNSVDIATLIFVLSAIH--PN----------------------------------KFST 170 (218)
Q Consensus 130 i~~~---~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~----------------------------------~~~~ 170 (218)
..|. .+.+.. .-+|.++.+++++...+|+++ |+ |+..
T Consensus 143 ~~f~~gvpGSFY~----RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~ 218 (386)
T PLN02668 143 SYFAAGVPGSFYR----RLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAG 218 (386)
T ss_pred ceEEEecCccccc----cccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHH
Confidence 1122 233443 457888999999999999886 22 1234
Q ss_pred HHHHHHHhccCCeEEEEEecCCCc
Q psy1107 171 VVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 171 ~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|+.-.+-|.|||.+++.-.++.+
T Consensus 219 FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 219 FLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHHHHhccCcEEEEEEecCCC
Confidence 455556788999999998877654
No 265
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.35 E-value=0.0013 Score=52.49 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=61.5
Q ss_pred hHHHHHHhhhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc-cC
Q psy1107 67 VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL-NQ 145 (218)
Q Consensus 67 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 145 (218)
..+..+.+ ...++..++|.-.|.|..+..+++..+.++++|+|-++.+++.++++......++.+++.++.+.... ..
T Consensus 9 l~Evl~~L-~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEAL-NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHH-T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhh-CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 33444442 35667899999999999999999988779999999999999999998776667899999988764321 12
Q ss_pred C-CCCcccEEEe
Q psy1107 146 V-PHNSVDIATL 156 (218)
Q Consensus 146 ~-~~~~~D~i~~ 156 (218)
. ...++|.|++
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3347888877
No 266
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.25 E-value=0.003 Score=48.26 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=62.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
-.+++||-+|-+- ..++.++..++..+|+.+|+++..++..+..++..+.++..+..|+.+.- +..+ .++||++++.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~L-P~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPL-PEEL-RGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTT-SS-BSEEEE-
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccC-CHHH-hcCCCEEEeC
Confidence 3578999998553 23334444444569999999999999999888777767999999988731 1112 3699999874
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
-. . .++...-++.+....||..|...+..++..
T Consensus 120 PP-y--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 120 PP-Y--TPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp ---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CC-C--CHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 21 1 124567788999999987663334343333
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.24 E-value=0.0023 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=65.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHH----------HHHHHHhCCcccCCCceEEeccCCCcccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPR----------AVNFFKLNPLYDASKMNVFPCDVTEDDIL 143 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~----------~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 143 (218)
....++.+|+|+-.|.|.++.-++.. +|...|+++-..+. +-..+++... .|+..+..+...
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~e~~~~~~~A---- 116 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANVEVIGKPLVA---- 116 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh---hhhhhhCCcccc----
Confidence 55678999999999999999888765 56667777643332 1111111100 122222222222
Q ss_pred cCCCCCcccEEEechhhc-----CCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 144 NQVPHNSVDIATLIFVLS-----AIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~-----~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
.. +....|++......| .+++.....+...+++.|||||.+++.++.
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 233456555532222 233567788999999999999999998744
No 268
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.23 E-value=0.0022 Score=52.12 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=63.6
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhc--------C--------CccEEEEEeCCHHHHHHHHhCCccc------CCCc--e
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSW--------S--------KICYIHACDISPRAVNFFKLNPLYD------ASKM--N 131 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~--------~--------~~~~v~~~D~s~~~~~~~~~~~~~~------~~~i--~ 131 (218)
......+|+|+||.+|..+..+... + |..+++--|.-..-....-...... ..++ .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3456679999999999988777643 1 2346777775443322222221111 1222 2
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhcCCC--cch-----------------------------------HHHHHHH
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH--PNK-----------------------------------FSTVVKN 174 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~~-----------------------------------~~~~l~~ 174 (218)
-+.+.+.. .-+|.++.|++++...+|+++ |.. +..+|+.
T Consensus 93 gvpgSFy~----rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~ 168 (334)
T PF03492_consen 93 GVPGSFYG----RLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKA 168 (334)
T ss_dssp EEES-TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhh----ccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455655 567888999999998888886 211 2244455
Q ss_pred HHHhccCCeEEEEEecCCCc
Q psy1107 175 LFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 175 ~~~~Lk~gG~li~~~~~~~~ 194 (218)
=.+-|+|||++++.-.++.+
T Consensus 169 Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 169 RAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHEEEEEEEEEEEEE-ST
T ss_pred hhheeccCcEEEEEEeeccc
Confidence 56778999999998877666
No 269
>KOG2793|consensus
Probab=97.18 E-value=0.0042 Score=47.93 Aligned_cols=113 Identities=17% Similarity=-0.002 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC------CcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN------PLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
+..+||++|+|+|-.+..++... ...|...|...........+ ....+..+.....+..+...........+|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 56689999999997777776644 35888888744332222221 111223555555555443222222221289
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+|++..++..- +....++..++.+|-.+|.+++.-.-+++
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecccc
Confidence 99999887755 46667777788888888855555444443
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.17 E-value=0.00053 Score=57.42 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=64.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHH----HHHHHHhCCcccCCCceEEeccCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPR----AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D 152 (218)
...-..|+|+.+|.|.++..+.+. .|+.+..-+. .+...-.+ -+.-...|..+ ..+....+||
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIydR------GLIG~yhDWCE---~fsTYPRTYD 429 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYDR------GLIGVYHDWCE---AFSTYPRTYD 429 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhhc------ccchhccchhh---ccCCCCcchh
Confidence 345679999999999999888754 2444443332 11111111 11111123333 1233345899
Q ss_pred EEEechhhcCCC-cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.+..++.... .-+...++-++-|+|+|+|.+++.|
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 999998887654 3467788999999999999999977
No 271
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.14 E-value=0.0012 Score=52.33 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred CcEEEEecCCCchh-HHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-C--CCceEEeccCCCcccccC--CCCCcccE
Q psy1107 80 EGVLLEVGCGVGNF-IFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-A--SKMNVFPCDVTEDDILNQ--VPHNSVDI 153 (218)
Q Consensus 80 ~~~vLDiGcG~G~~-~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~--~~i~~~~~d~~~~~~~~~--~~~~~~D~ 153 (218)
..++||||+|.... .+..+..+ +++++|.|+++.+++.|+.+...+ . .+|.+....-.. .++.. .+...||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~-~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD-NIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST--SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc-ccchhhhcccceeeE
Confidence 56899999997644 22223333 589999999999999999987665 2 567776553211 11111 22358999
Q ss_pred EEechhhcCCC
Q psy1107 154 ATLIFVLSAIH 164 (218)
Q Consensus 154 i~~~~~l~~~~ 164 (218)
.+|+-.++...
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99987666443
No 272
>KOG2798|consensus
Probab=97.07 E-value=0.0062 Score=48.19 Aligned_cols=37 Identities=19% Similarity=0.461 Sum_probs=30.6
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
++||+|+..+.+... .+....++.+..+|||||.++=
T Consensus 258 ~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEe
Confidence 479999887776655 5788899999999999998774
No 273
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.91 E-value=0.008 Score=51.47 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCC----ccEEEEEeCCHHHHHHHHhCCcccCCC--ceEEeccCCCccccc-CCCCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSK----ICYIHACDISPRAVNFFKLNPLYDASK--MNVFPCDVTEDDILN-QVPHNS 150 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~----~~~v~~~D~s~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~-~~~~~~ 150 (218)
.+..+|+|..||+|.+.....+... ...++|.|+++.....|+.+.--.+.+ +.....|-....... ......
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999999877765531 367999999999999999885544322 344444433321111 123357
Q ss_pred ccEEEechhhc--------------------C-CCc--chHHHHHHHHHHhccCCeEEEE
Q psy1107 151 VDIATLIFVLS--------------------A-IHP--NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 151 ~D~i~~~~~l~--------------------~-~~~--~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
||.|+++-.+. . +++ .....++..+...|+|||...+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 89888844332 0 111 1225788999999999885544
No 274
>PRK10742 putative methyltransferase; Provisional
Probab=96.91 E-value=0.0023 Score=49.27 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=54.7
Q ss_pred CCCc--EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-------C---CCceEEeccCCCcccccC
Q psy1107 78 VGEG--VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-------A---SKMNVFPCDVTEDDILNQ 145 (218)
Q Consensus 78 ~~~~--~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-------~---~~i~~~~~d~~~~~~~~~ 145 (218)
.++. +|||+.+|.|..+..++..+ ++|+++|-++......+...... . .++++++.|.... ...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~--L~~ 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--LTD 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH--Hhh
Confidence 4444 99999999999999999886 68999999998887777654331 1 3577777776542 222
Q ss_pred CCCCcccEEEe
Q psy1107 146 VPHNSVDIATL 156 (218)
Q Consensus 146 ~~~~~~D~i~~ 156 (218)
.+. +||+|++
T Consensus 161 ~~~-~fDVVYl 170 (250)
T PRK10742 161 ITP-RPQVVYL 170 (250)
T ss_pred CCC-CCcEEEE
Confidence 333 7999998
No 275
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.87 E-value=0.00041 Score=46.21 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=30.7
Q ss_pred cccEEEechhhcCCC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 150 SVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.||+|+|..|.-+++ ++....+++.+.+.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988766553 355778999999999999999884
No 276
>KOG1562|consensus
Probab=96.87 E-value=0.0044 Score=48.63 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=79.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc-----ccCCCceEEeccCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL-----YDASKMNVFPCDVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~ 149 (218)
....+++++|-||.|.|...+..+..-.-..+..+|++...++..++-.. ..+.++.++.+|... +....+.+
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~~~~ 194 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDLKEN 194 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHhccC
Confidence 33457789999999999999888876333478899999999998887643 234678888887654 22345567
Q ss_pred cccEEEechhhcCCCc--chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHP--NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+||+|+.-..=--.|. --...++..+.+.||++|+++...
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999997432111110 013577788899999999888754
No 277
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0038 Score=50.46 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|||.=+|+|.=++.++...+..+++.=|+|+.+++..+.|...+ +.+...+..|..... .-....||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm---~~~~~~fd~IDiD- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL---HELHRAFDVIDID- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH---HhcCCCccEEecC-
Confidence 78999999999999988887765458999999999999999997765 445555555543311 1112578888542
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|...+..+++.+.+.++.||+|.+..
T Consensus 129 -----PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 -----PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -----CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 22345578899999999999998854
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.74 E-value=0.0028 Score=52.28 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccC--C-CceEEeccCCCcccccCCCCCcccEE
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDA--S-KMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~--~-~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.+.++||.=+|+|.=++.++.. ....+|++-|+|+.+++..+.|...++ . .+.+.+.|+.... ......||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll---~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL---YSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH---CHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh---hhccccCCEE
Confidence 4579999999999998888876 333589999999999999999866554 2 3566676765421 1234589999
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
=.. |..-+..+++.+.+.++.||+|.+..
T Consensus 126 DlD------PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLD------PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeC------CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 652 22456689999999999999999965
No 279
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.018 Score=44.19 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=77.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCC-cccC-CCceEEeccCCCcccccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNP-LYDA-SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~-~~~~-~~i~~~~~d~~~~~~~~~~~~ 148 (218)
+..-.+...+|+|+|+..-++.+... +...+++.+|+|...+....... ..++ -.+.-+++|.... + ..++.
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~-L-a~~~~ 151 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELA-L-AELPR 151 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHH-H-hcccC
Confidence 33445789999999998877766654 33469999999998776554432 2222 3455556665432 1 12333
Q ss_pred CcccE-EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDI-ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~-i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+--+ ++....+..+.|++...++.++...++||-++++..
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33333 444567889999999999999999999999999854
No 280
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.64 E-value=0.0072 Score=47.38 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=71.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc----cCCCceEEeccCCCcccccC-----CCCCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY----DASKMNVFPCDVTEDDILNQ-----VPHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~-----~~~~~ 150 (218)
..+|+.+|||.-.-...+.. .+...++-+|. +.+++.-++.... ...+.+++.+|+. .++... +....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence 46899999997555544421 22346666665 3444444443332 2357889999988 443222 33334
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
--++++.+++.+++++....++..+.+...||+.+++-...
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45888889999999889999999999888788877775433
No 281
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.62 E-value=0.0091 Score=43.94 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHhhhcCCCcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ- 145 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 145 (218)
.+++ ...++..|+|+|.-.|..++.+|.. +...++.++|++-...+-+... .+.+.|+.++-.+.+..++
T Consensus 62 Qell-w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 62 QELL-WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred HHHH-HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHH
Confidence 4443 3446779999999998877776653 5557999999988765554432 2579999999888665332
Q ss_pred --CCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 146 --VPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 146 --~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
..++.--+.+|...-|+. +...+.++-+..+|..|-++++-|-..++.+
T Consensus 137 ~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred HHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 222222455565655655 4566777878899999999999775544443
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.60 E-value=0.021 Score=46.25 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=69.9
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
....|+.+|+=+|+| .|..+.++++..- ++|+++|.+++..+.|++.-. .+++... +.+....... .+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~--~~~~~~~~~~-~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSS--DSDALEAVKE-IADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcC--CchhhHHhHh-hCcE
Confidence 345678899888886 6688888887532 799999999999999998722 2233221 2111122222 3899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+.. . . ...+....+.|+++|.+++.....
T Consensus 233 ii~t-----v---~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDT-----V---G-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEC-----C---C-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 9853 2 2 456788889999999999988774
No 283
>KOG1253|consensus
Probab=96.50 E-value=0.0018 Score=54.08 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=81.9
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCc-cEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
....++.+|||.=|++|.-++.++...++ .++++-|.++.+++..+.+...+. .-+...+.|+...++........|
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 44567789999999999999999877554 389999999999999999876553 234455566655444444445689
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|-+. |......+++.+.+.++.||+|++..
T Consensus 185 DvIDLD------PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD------PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC------CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 988642 23455679999999999999999965
No 284
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.01 Score=47.36 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=75.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCcccccCCC-----CC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILNQVP-----HN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~-----~~ 149 (218)
..+|+-+|||-- ++.+.-..| ...++-+|. |+.++.=++.....+ ...+++.+|+.+.++...+. ..
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 689999999863 333322333 357777776 566666555554433 37899999999766654444 33
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.--++++.+++.+++++...+++..+.....||-.+++.-
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 4458888999999999999999999999988888666643
No 285
>KOG4058|consensus
Probab=96.30 E-value=0.012 Score=41.42 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=72.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
.++..+.+|+|+|.|......++.+ -...+|+++++-.+.+++-.+-. ......|...|+-+.++ . .|..+
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl----~--dy~~v 142 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL----R--DYRNV 142 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc----c--ccceE
Confidence 4556799999999999998888776 35789999999998888765332 23567787777765332 1 24333
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+...+- +....+-.++..-+..|..++..-|....
T Consensus 143 viFgae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 143 VIFGAE-----SVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred EEeehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 332221 23334556777788888888887766544
No 286
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.23 E-value=0.017 Score=45.76 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhc
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS 161 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~ 161 (218)
+++|+.||.|.++.-+...+- ..++++|+++.+++..+.+... ...+.|+.+.... .+ ...+|+++......
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~-~~-~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEK-DF-IPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchh-hc-CCCCCEEEeCCCCh
Confidence 689999999999888887763 3688899999999999887542 1455676663211 11 24689999855444
Q ss_pred CC
Q psy1107 162 AI 163 (218)
Q Consensus 162 ~~ 163 (218)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 33
No 287
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=96.23 E-value=0.0058 Score=45.26 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=58.4
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC----CCceEEeccCCCccccc-----CCCCCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA----SKMNVFPCDVTEDDILN-----QVPHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~----~~i~~~~~d~~~~~~~~-----~~~~~~ 150 (218)
..+|+.+|||.-.....+....+...++-+|. +.+++.-++.....+ .+.+++.+|+.+..+.. .+..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44999999998777766665444567777886 444444444433221 34678999999765432 233445
Q ss_pred ccEEEechhhcCCCcchHHHHHHHH
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNL 175 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~ 175 (218)
.-++++.+++.+++++....++..+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5688888999999877777776654
No 288
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.21 E-value=0.024 Score=37.68 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=26.7
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
.+....+|+|||+|.+..-+.+.+ ..=.|+|...
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCC--CCcccccccc
Confidence 456789999999999998887776 3567888643
No 289
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.20 E-value=0.017 Score=43.91 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=35.6
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL 121 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~ 121 (218)
....++..|||.-||+|..+..+.+.+ ++.+|+|+++...+.|++
T Consensus 187 ~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 187 ASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 445778999999999999998887776 689999999999998863
No 290
>KOG1501|consensus
Probab=96.18 E-value=0.0082 Score=49.67 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=61.3
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
..-+||||.|+|.++...+..+.+ .+++++.-..+.+.|+.....++ .++.++.-.-++.. ..+....|+++..
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~---vg~~~RadI~v~e 142 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK---VGGSSRADIAVRE 142 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee---ecCcchhhhhhHh
Confidence 356899999999999888877755 79999999999999998766555 56666654333311 1122346777654
Q ss_pred hhhcCCCcchHHHHHHHHHHhc
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIML 179 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~L 179 (218)
.+...+--+.....++.+.+.|
T Consensus 143 ~fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhhccccchhHHHHHHHh
Confidence 3333222222334555555554
No 291
>KOG2671|consensus
Probab=96.08 E-value=0.0089 Score=47.93 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=74.8
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHH-------HhCCcccC---CCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-------KLNPLYDA---SKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~-------~~~~~~~~---~~i~~~~~d~~~~~~~~ 144 (218)
+...++..|+|.-.|+|.+....+..+ +-|+|.||+-.++... +.+++.++ .=+.++..|+.+..+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 667889999999999999998888776 5899999998887632 22333333 22556677887754432
Q ss_pred CCCCCcccEEEech------------------------hhcCCCc-------chHHHHHHHHHHhccCCeEEEEEe
Q psy1107 145 QVPHNSVDIATLIF------------------------VLSAIHP-------NKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 145 ~~~~~~~D~i~~~~------------------------~l~~~~~-------~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.-.||.|+|.- -..|.|. +.....+.-..+.|..||++++.-
T Consensus 282 ---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 ---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred ---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 45899999910 0112221 112355566789999999999864
No 292
>PRK11524 putative methyltransferase; Provisional
Probab=95.91 E-value=0.023 Score=45.19 Aligned_cols=48 Identities=6% Similarity=-0.163 Sum_probs=41.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
....++..|||.-||+|..+....+.+ ++++|+|++++..+.|+.++.
T Consensus 204 ~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 204 ASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 445789999999999999998777765 699999999999999998853
No 293
>KOG0822|consensus
Probab=95.82 E-value=0.034 Score=47.19 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=74.3
Q ss_pred CcEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhC-CcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLN-PLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...|.-+|+|.|.+.....+. ....++++++=+|.++...+.. ......++.++.+|++. ...|....|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~----w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK----WNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc----cCCchhhccch
Confidence 457789999999887655443 3346899999999998888764 33445789999999987 23333578988
Q ss_pred EechhhcCCCc-chHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 155 TLIFVLSAIHP-NKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 155 ~~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
++ ..+..+.+ +.-..-+.-+.+.|||+|+.+-..|..
T Consensus 444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred HH-HhhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 76 22222221 223356677788999999877665443
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.77 E-value=0.03 Score=43.70 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--------CccEEEEEeCCHHHHHHHHhCCcc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--------KICYIHACDISPRAVNFFKLNPLY 125 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--------~~~~v~~~D~s~~~~~~~~~~~~~ 125 (218)
.+.+|+|+|+|+|.++..++... ...+++.+|+|+...+.-++....
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35799999999999998887642 235899999999988777776544
No 295
>PHA01634 hypothetical protein
Probab=95.72 E-value=0.027 Score=38.67 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
-++.+|+|||++.|..++.++..+.. .|++++.++...+..+.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHHHhh
Confidence 36789999999999999999988754 99999999999999988654
No 296
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.68 E-value=0.031 Score=46.22 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=55.0
Q ss_pred CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 128 ~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.++.++..++.+. ....+.+++|.++++....+++++.....+..+.+.++|||.+++.......
T Consensus 275 drv~i~t~si~~~--L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEV--LRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHH--HHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 5788888887662 3346678999999999999999999999999999999999999998866444
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.56 E-value=0.071 Score=41.36 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred cCCCcEEEEecCCCchhHHHHhhc-----CCccEEEEEeCCH--------------------------HHHHHHHhCCcc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSW-----SKICYIHACDISP--------------------------RAVNFFKLNPLY 125 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~-----~~~~~v~~~D~s~--------------------------~~~~~~~~~~~~ 125 (218)
..-+..|+|+||-.|..+..++.. .++.+++++|.-. ...+..+.++..
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 345679999999999877655322 2456888988321 234555556554
Q ss_pred cC---CCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 126 DA---SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 126 ~~---~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
.+ .++.++.+.+.+. + ...+..++-++.+-. .+ .+-....|..++..|.|||++++-||+.
T Consensus 152 ~gl~~~~v~~vkG~F~dT-L-p~~p~~~IAll~lD~---Dl-YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDT-L-PDAPIERIALLHLDC---DL-YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTTSSTTEEEEES-HHHH-C-CC-TT--EEEEEE------S-HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cCCCcccEEEECCcchhh-h-ccCCCccEEEEEEec---cc-hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 33 5788888877442 1 122233333332211 11 1345678888999999999999999886
No 298
>KOG2539|consensus
Probab=95.47 E-value=0.089 Score=44.07 Aligned_cols=114 Identities=16% Similarity=0.013 Sum_probs=69.7
Q ss_pred cCCCcEEEEecCCCchh--HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC-Ccc
Q psy1107 77 DVGEGVLLEVGCGVGNF--IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH-NSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~--~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~-~~~ 151 (218)
...+..+.|+|.|.|.- +....-......++.||.+..+......+..... ........-+.. ...+.+. ..|
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r--~~~pi~~~~~y 275 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR--QRLPIDIKNGY 275 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc--ccCCCCcccce
Confidence 34567888998886644 4444333445689999999999888877655411 112121211211 1233333 459
Q ss_pred cEEEechhhcCCC-cchHHHHHH-HHHHhccCCeEEEEEecCC
Q psy1107 152 DIATLIFVLSAIH-PNKFSTVVK-NLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 152 D~i~~~~~l~~~~-~~~~~~~l~-~~~~~Lk~gG~li~~~~~~ 192 (218)
|+|++.+.++++. ......+.. .++...++||.+++.+-+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9999999998886 233333443 3466678999999987443
No 299
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.27 E-value=0.11 Score=35.70 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=52.2
Q ss_pred HHHHhhhcCCCcEEEEecCCCch-hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCC
Q psy1107 70 FHEFVNQDVGEGVLLEVGCGVGN-FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 70 ~~~~~~~~~~~~~vLDiGcG~G~-~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 148 (218)
+.+.+....+..+|+|+|-|.=. .+..+.+.+ ..++++|+.+.. + +..+.++.-|++++... +-
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~~---a-------~~g~~~v~DDif~P~l~--iY- 68 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPRK---A-------PEGVNFVVDDIFNPNLE--IY- 68 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------------STTEE---SSS--HH--HH-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECcccc---c-------ccCcceeeecccCCCHH--Hh-
Confidence 44444545566799999999654 355555555 699999998871 1 13578888888885431 11
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
...|+|.+... |++....+ ..+.+. -|.-+++...+....
T Consensus 69 ~~a~lIYSiRP----P~El~~~i-l~lA~~--v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 69 EGADLIYSIRP----PPELQPPI-LELAKK--VGADLIIRPLGGESP 108 (127)
T ss_dssp TTEEEEEEES------TTSHHHH-HHHHHH--HT-EEEEE-BTTB--
T ss_pred cCCcEEEEeCC----ChHHhHHH-HHHHHH--hCCCEEEECCCCCCC
Confidence 25789987532 23334444 444443 356688877775554
No 300
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.24 E-value=0.059 Score=42.92 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=70.2
Q ss_pred CcEEEEecCCCchhHHHHhhcC--------------------CccEEEEEeCCH--HHHHHHHhCCccc-----------
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--------------------KICYIHACDISP--RAVNFFKLNPLYD----------- 126 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--------------------~~~~v~~~D~s~--~~~~~~~~~~~~~----------- 126 (218)
..+||-||.|.|.-...++... +...++.+|+.. ..++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999986555554332 124899999876 2333333321111
Q ss_pred -----C--CCceEEeccCCCccccc---CCCCCcccEEEechhhcCCC---cchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 127 -----A--SKMNVFPCDVTEDDILN---QVPHNSVDIATLIFVLSAIH---PNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 127 -----~--~~i~~~~~d~~~~~~~~---~~~~~~~D~i~~~~~l~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+ -++.|.+.|+....... -+...+.++|.+.+.+..+- .....+++..+...++||-+|+|+|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 35788888887743211 11223578888877655432 2345688899999999999999987
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.17 E-value=0.12 Score=42.31 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-cCCCcccccCCCC-CcccEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-DVTEDDILNQVPH-NSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~-~~~D~i 154 (218)
.++.+|+=+||| .|.++..+++.....+++++|.++..++.|++..... .+..... +... . ...... ..+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~-~-~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGA-E-ILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHH-H-HHHHhCCCCCCEE
Confidence 344499999999 5666677777655569999999999999998842211 0000000 0000 0 011112 268988
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+-... ....+..+.++++|+|.+++.......
T Consensus 243 ie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG--------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC--------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 84321 234788899999999999997755444
No 302
>KOG2920|consensus
Probab=95.17 E-value=0.015 Score=45.47 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH-hCCcc-------cCCC---ceEEeccCCCcccccC
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK-LNPLY-------DASK---MNVFPCDVTEDDILNQ 145 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~-~~~~~-------~~~~---i~~~~~d~~~~~~~~~ 145 (218)
...+++|||+|||+|...+.+...+. ..+...|++...+..-. .+... ...+ ..+...+..+ ....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d--g~~~ 190 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD--GVFN 190 (282)
T ss_pred EecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc--chhh
Confidence 45788999999999998888776553 47788888887763221 11100 0001 1111110101 0000
Q ss_pred CCC-CcccEEEechhhcCCCcchHHHH-HHHHHHhccCCeEEEEEe
Q psy1107 146 VPH-NSVDIATLIFVLSAIHPNKFSTV-VKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 146 ~~~-~~~D~i~~~~~l~~~~~~~~~~~-l~~~~~~Lk~gG~li~~~ 189 (218)
... ..||+|.....+.... ....+ ......+++++|.++++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 111 2789998877665442 33333 455566778999887754
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.00 E-value=0.11 Score=43.11 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=66.3
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-----ccccCCCCC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-----DILNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~ 149 (218)
...++.+||..|||. |..+..+++.....++++++.++...+.++.... ..++. .... .+.......
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-----~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-----AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----cEEEc--CCcchHHHHHHHHHcCCC
Confidence 345678899999987 8888888877533369999999999999887521 11111 1111 011112223
Q ss_pred cccEEEechhhc-----------CC--CcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLS-----------AI--HPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~-----------~~--~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+|+....-. |. +..+....+..+.+.++++|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 689887632100 00 11123457788899999999998864
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.99 E-value=0.06 Score=43.38 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=52.5
Q ss_pred EEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhc
Q psy1107 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLS 161 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~ 161 (218)
+++|+.||.|.+..-+...+- -.+.++|+++.+.+.-+.+.. .....|+.+.+. ..++. .+|+++......
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~-~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP------EVICGDITEIDP-SDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHH-HHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc------cccccccccccc-ccccc-cceEEEeccCCc
Confidence 799999999999998888773 378899999999998887743 667788877542 13443 599999866555
Q ss_pred CCC
Q psy1107 162 AIH 164 (218)
Q Consensus 162 ~~~ 164 (218)
.++
T Consensus 73 ~fS 75 (335)
T PF00145_consen 73 GFS 75 (335)
T ss_dssp TTS
T ss_pred eEe
Confidence 544
No 305
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.90 E-value=0.026 Score=40.42 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=58.9
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+++.+-+|+.. .+...++-.+-..++..+++++-.+..-.+ ..-.++...|+... .....++||.+.|..+
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~-----dr~ssi~p~df~~~---~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR-----DRLSSILPVDFAKN---WQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc-----cccccccHHHHHHH---HHHhhccchhhheech
Confidence 45667777764 333334333333578888876522111100 00112222333221 1122358999999888
Q ss_pred hcCCC---------cchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 160 LSAIH---------PNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 160 l~~~~---------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
++|+- |....+.+.++..+|||||.|++.-.-+.+.
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 88773 1223466778899999999999966433443
No 306
>PRK13699 putative methylase; Provisional
Probab=94.86 E-value=0.091 Score=40.33 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=40.0
Q ss_pred hcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
...++..|||.-||+|..+....+.+ .+++|+|+++.-.+.+.++..
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 45688899999999999998887765 589999999999998887743
No 307
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.82 E-value=0.053 Score=41.59 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=44.0
Q ss_pred cEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHh-------CCcc---cCCCceEEeccCCCcccccCCCCCc
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL-------NPLY---DASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~-------~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
.+|||.-+|-|..+..++..+ ++|++++-|+......+. .... .-.++.+++.|..+- ...+..+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCHSS-
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---HhhcCCC
Confidence 499999999999999988765 689999999866544442 1111 013688888887662 3355679
Q ss_pred ccEEEechhh
Q psy1107 151 VDIATLIFVL 160 (218)
Q Consensus 151 ~D~i~~~~~l 160 (218)
+|+|++--++
T Consensus 152 ~DVVY~DPMF 161 (234)
T PF04445_consen 152 FDVVYFDPMF 161 (234)
T ss_dssp -SEEEE--S-
T ss_pred CCEEEECCCC
Confidence 9999984443
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.79 E-value=0.19 Score=33.86 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCc
Q psy1107 88 CGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP 165 (218)
Q Consensus 88 cG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~ 165 (218)
||.|..+..+++.. ....++.+|.++..++.+... .+.++.+|..+...+....-.+.+.+++.. +.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILT-----DD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEcc-----CC
Confidence 56666777776542 224899999999999988865 367889999987655444445788777642 22
Q ss_pred chHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 166 NKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 166 ~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.....+-...+.+.|...+++.-.....
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 33344445556777788888876644333
No 309
>KOG0024|consensus
Probab=94.77 E-value=0.13 Score=41.15 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=68.9
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec-c-CCC--cccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC-D-VTE--DDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d-~~~--~~~~~~~~~~ 149 (218)
.....+.+||-+|+| .|..+...++..-..+|+.+|.++..++.|++. ... .+..... + ... ......+...
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~--~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GAT--VTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCe--EEeeccccccHHHHHHHHHhhcccc
Confidence 445678999999999 466666666664445999999999999999984 211 1111100 0 000 0000122223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
.+|+.+-.. .....++.+...++++|.+++..++....
T Consensus 242 ~~d~~~dCs--------G~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 242 QPDVTFDCS--------GAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred CCCeEEEcc--------CchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 477777432 34456777788999999999888775554
No 310
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.68 E-value=0.1 Score=39.77 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=54.7
Q ss_pred hHHHHHHh-----hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccCC
Q psy1107 67 VNEFHEFV-----NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDVT 138 (218)
Q Consensus 67 ~~~~~~~~-----~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~~ 138 (218)
.+.+.+++ ....+..++||||.|.-..=-.+-..-...+.+|.|+++.+++.|+.....++ ..+......=
T Consensus 61 ih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~- 139 (292)
T COG3129 61 IHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD- 139 (292)
T ss_pred HHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC-
Confidence 34556665 22246678999998864321111111123689999999999999998765543 2333332210
Q ss_pred CcccccC-C-CCCcccEEEechhhcCC
Q psy1107 139 EDDILNQ-V-PHNSVDIATLIFVLSAI 163 (218)
Q Consensus 139 ~~~~~~~-~-~~~~~D~i~~~~~l~~~ 163 (218)
...++.. . .+..||+.+|+-.+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 0111122 1 24589999998766643
No 311
>KOG2651|consensus
Probab=94.51 E-value=0.12 Score=42.27 Aligned_cols=47 Identities=21% Similarity=0.091 Sum_probs=38.0
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....+..+++|+|.|.|+++..+.-.+ +..|.+||-|....+.|+..
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence 444567899999999999998886554 46999999998887777654
No 312
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.20 E-value=0.097 Score=46.74 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhc-------CC-----ccEEEEEeCCH---HHHHHHHhCC-----------ccc-----
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW-------SK-----ICYIHACDISP---RAVNFFKLNP-----------LYD----- 126 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~-------~~-----~~~v~~~D~s~---~~~~~~~~~~-----------~~~----- 126 (218)
.+..+|+|+|.|+|......... .| ..+++.+|..+ ..+..+.... ...
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44579999999999865554422 23 35899999644 2222222110 000
Q ss_pred --------CC--CceEEeccCCCcccccCCCCCcccEEEechhhcCCCcch-HHHHHHHHHHhccCCeEEEEEe
Q psy1107 127 --------AS--KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK-FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 127 --------~~--~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. ++.+..+|+.+. ...+. ..+|++++-..--.-.|+. -..++..+.++++|||.|.-..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~--~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANEL--LPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHH--HHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 01 233444555431 11122 4689998743211111222 2478899999999999888543
No 313
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.14 E-value=0.61 Score=40.22 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=64.1
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc---------ccc---
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD---------ILN--- 144 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~--- 144 (218)
.++.+|+=+||| .|..++..+... .+.|+++|.++..++.++..- ..+...|..+.+ ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG------A~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG------AEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC------CeEEEeccccccccccchhhhcchhHH
Confidence 478999999999 566666666553 358999999999999998741 122212211100 000
Q ss_pred -----CCCC--CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 145 -----QVPH--NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 145 -----~~~~--~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.. ..+|+|+.......-+ .+..+.+.+.+.+||||.++....
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEcc
Confidence 0011 3589998754322110 122335889999999998887654
No 314
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.11 Score=42.24 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=36.8
Q ss_pred CCCcEEEEecCCCchhHHHHhhc----CC----ccEEEEEeCCHHHHHHHHhCCc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSW----SK----ICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~----~~----~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
+.+..++|+|.|.|.++..++.. .| ..++..+++|++..+.=++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 44678999999999998887754 33 4699999999988777666543
No 315
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.58 E-value=0.83 Score=37.20 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCCcEEEEecCC-CchhHHHHhhc-CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~-~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+||-+||| .|..+..+++. ....+++++|.++..++.++.. .. .... -+..+ ...+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~----~~~~-~~~~~--------~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DE----TYLI-DDIPE--------DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cc----eeeh-hhhhh--------ccCCcEEE
Confidence 567899999986 45555666653 3235899999999888888641 11 1100 01111 11478887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
-. .........+..+.++|+++|.+++...
T Consensus 228 D~-----~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 EC-----VGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EC-----CCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 42 1100123567888899999999988664
No 316
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.37 E-value=0.72 Score=33.58 Aligned_cols=109 Identities=15% Similarity=0.005 Sum_probs=58.3
Q ss_pred ecCCCchhHHHHhhcCC-ccEEEEEeCCHHH--HHHHH---hCCccc--CCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 86 VGCGVGNFIFPLLSWSK-ICYIHACDISPRA--VNFFK---LNPLYD--ASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 86 iGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~--~~~~~---~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
||=|.=.++..++.... ...+++.-++... .+.-. .+.... ..-.-.+..|++............||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 44444455666666543 4466665444332 11111 111111 1122234567766432223356789999987
Q ss_pred hhhcCCC-----------cchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 158 FVLSAIH-----------PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 158 ~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.-.... ......++..+..+|+++|.+.+.--...+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 7533310 112457788899999999999886544333
No 317
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.35 E-value=0.9 Score=36.96 Aligned_cols=98 Identities=13% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc-CCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~~D~i~ 155 (218)
.++.+||=.||| .|..+.++++..-..+++++|.++..++.+++.-. . .++ |..+.+... ....+.+|+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA----D-KLV--NPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC----c-EEe--cCCcccHHHHhccCCCCCEEE
Confidence 356788888886 56666667665322278999999999999886421 1 111 111111100 01123589887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. .. ....+..+.+.|++||.+++...
T Consensus 241 d~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EV-----SG---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EC-----CC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 42 21 12356778889999999998654
No 318
>KOG1227|consensus
Probab=93.32 E-value=0.095 Score=41.45 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCCcEEEEecCCCchhHH-HHhhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCGVGNFIF-PLLSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~-~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..+..|+|+-+|-|.++. .+...+. ..|+++|.++.+++..++++..++ .....+.+|-. ..-+....|-|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R-----~~~~~~~AdrV 266 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR-----NPKPRLRADRV 266 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc-----ccCccccchhe
Confidence 345789999999999998 5555553 489999999999999999876553 12233333322 23344567777
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeE
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
.+.. +| + -++-+..+.++|||.|-
T Consensus 267 nLGL----lP-S-se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGL----LP-S-SEQGWPTAIKALKPEGG 290 (351)
T ss_pred eecc----cc-c-cccchHHHHHHhhhcCC
Confidence 6642 22 1 12344456677777443
No 319
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.22 E-value=0.33 Score=33.29 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCCcccEEEechhhcCCC
Q psy1107 89 GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHNSVDIATLIFVLSAIH 164 (218)
Q Consensus 89 G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~~D~i~~~~~l~~~~ 164 (218)
|.|..+..+++..- .+++++|.++..++.+++.-. ..+ .|..+.+ +....+...+|+|+-. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga-----~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA-----DHV--IDYSDDDFVEQIRELTGGRGVDVVIDC-----VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE-----SEE--EETTTSSHHHHHHHHTTTSSEEEEEES-----SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc-----ccc--ccccccccccccccccccccceEEEEe-----cC
Confidence 35778888887754 799999999999999987621 111 1111211 1112233479999842 31
Q ss_pred cchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 165 PNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 165 ~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
-...++.+..+|+++|.+++.....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2468888999999999999987665
No 320
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.17 E-value=1.6 Score=31.56 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=62.1
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-ccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-LNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~D~i~ 155 (218)
..+..+|+-|||=+-.....- ...+..++...|++...... +.+ .|..-|...... +..+ .+++|+|+
T Consensus 23 ~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD~~~p~~~~~~l-~~~~d~vv 91 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYDYNEPEELPEEL-KGKFDVVV 91 (162)
T ss_pred cCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--------CCc-ceEECCCCChhhhhhhc-CCCceEEE
Confidence 345689999999774444332 13455689999998765332 223 455555555321 1223 46999999
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+--.+ +..+.+..+...+..++++++.+++..
T Consensus 92 ~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 85443 444555666666777778888888765
No 321
>PTZ00357 methyltransferase; Provisional
Probab=92.95 E-value=0.7 Score=41.07 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=59.1
Q ss_pred cEEEEecCCCchhHHHHhhc----CCccEEEEEeCCHHHHHHHHhC---Cccc-------CCCceEEeccCCCccccc--
Q psy1107 81 GVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLN---PLYD-------ASKMNVFPCDVTEDDILN-- 144 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~----~~~~~v~~~D~s~~~~~~~~~~---~~~~-------~~~i~~~~~d~~~~~~~~-- 144 (218)
..|+-+|+|.|.+.....+. +-..++++++=++.++...+.+ .... +..+.++..|+..-....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 57899999999887666543 3456999999986543333222 1111 346899999988742211
Q ss_pred -----CCCCCcccEEEec----hhhcCCCcchHHHHHHHHHHhccCCeE
Q psy1107 145 -----QVPHNSVDIATLI----FVLSAIHPNKFSTVVKNLFIMLKSGGI 184 (218)
Q Consensus 145 -----~~~~~~~D~i~~~----~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 184 (218)
+..-+++|+|++. +.-.-++|+.++.+-+.+..+.+.+|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1112479999872 122233455544443333322223665
No 322
>KOG2078|consensus
Probab=92.93 E-value=0.088 Score=43.60 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=49.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC---CCceEEeccC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA---SKMNVFPCDV 137 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~---~~i~~~~~d~ 137 (218)
....++..|+|+.||.|.++..++..+ ++|++-|.++++++..+.+.+.+- .++..+..|+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 335678899999999999999998876 899999999999999999876432 3366666554
No 323
>KOG2352|consensus
Probab=92.90 E-value=0.19 Score=42.48 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCccc---ccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDI---LNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~~~~~D~ 153 (218)
.-...+|-+|-|.|.+...+....|..+++++++++.+++.+...+.... .+..++..|....-. -..-....||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34568888899999998888777888899999999999999998865322 223333333322100 01123347888
Q ss_pred EEech---hhcCC--Ccc--hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIF---VLSAI--HPN--KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~---~l~~~--~~~--~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++..- -.+.+ ||. ....++..+...|.|.|.+++.-
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 87611 12222 111 23466778899999999988754
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.85 E-value=0.63 Score=41.19 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=63.7
Q ss_pred cEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..|+=+|+| ..+..+++. ..+..++.+|.+++.++.+++. ....+.+|.++.+......-.+.|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVIT- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence 355555554 455444432 1234899999999999988753 36678899998766544444568887763
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.+.+.....+-...+.+.|...+++.........
T Consensus 472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~ 505 (601)
T PRK03659 472 ----CNEPEDTMKIVELCQQHFPHLHILARARGRVEAH 505 (601)
T ss_pred ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 2212222233334555778888888775544433
No 325
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.77 E-value=0.48 Score=38.54 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
..+++|+.||.|.+..-+...+-. -+.++|+++.+++.-+.+... ..+...|+..... ..+....+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~-~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDG-EALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcCh-hhccccCCCEEEeCCC
Confidence 468999999999999888877743 788899999999998887552 3444555544211 1121116888888655
Q ss_pred hcCCC
Q psy1107 160 LSAIH 164 (218)
Q Consensus 160 l~~~~ 164 (218)
...++
T Consensus 77 CQ~FS 81 (328)
T COG0270 77 CQDFS 81 (328)
T ss_pred Ccchh
Confidence 55443
No 326
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.94 E-value=0.36 Score=38.99 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred EEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcC
Q psy1107 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162 (218)
Q Consensus 83 vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~ 162 (218)
|+|+.||.|.++.-+...+-. -+.++|+++.+.+..+.+... .+...|+.+... ..++ .+|+++.......
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~-~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~-~~~~--~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFGN-----KVPFGDITKISP-SDIP--DFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhh-hhCC--CcCEEEecCCCcc
Confidence 589999999999888777632 467799999999998887532 334567665321 1122 5788887554443
Q ss_pred C
Q psy1107 163 I 163 (218)
Q Consensus 163 ~ 163 (218)
+
T Consensus 72 f 72 (315)
T TIGR00675 72 F 72 (315)
T ss_pred c
Confidence 3
No 327
>KOG0821|consensus
Probab=91.88 E-value=0.28 Score=37.24 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=48.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 140 (218)
...-|.+||.|.|..++.+.+.+- .+...++.++..+.-.+-..+..+.+..+++.|+...
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 456889999999999999998764 4788888888887777776665667788888887654
No 328
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.55 E-value=2.8 Score=28.39 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=60.2
Q ss_pred HHhhhcCCCcEEEEecCCCc-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCc
Q psy1107 72 EFVNQDVGEGVLLEVGCGVG-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNS 150 (218)
Q Consensus 72 ~~~~~~~~~~~vLDiGcG~G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 150 (218)
+.++......+|+|+|-|.= ..+..+++.+ +.++++|+++. +. +..+.++.-|++++.. .+- ..
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~-------~a---~~g~~~v~DDitnP~~--~iY-~~ 70 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK-------TA---PEGLRFVVDDITNPNI--SIY-EG 70 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc-------cC---cccceEEEccCCCccH--HHh-hC
Confidence 33444455669999999854 3355555555 68999999876 11 2458889999988543 111 24
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.|+|.+.- ||.+....+-.+.+.+ |.-+++......+
T Consensus 71 A~lIYSiR-----pppEl~~~ildva~aV--ga~l~I~pL~Ge~ 107 (129)
T COG1255 71 ADLIYSIR-----PPPELQSAILDVAKAV--GAPLYIKPLTGEP 107 (129)
T ss_pred ccceeecC-----CCHHHHHHHHHHHHhh--CCCEEEEecCCCC
Confidence 68887632 3334444444455544 3446665544444
No 329
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.48 E-value=1.4 Score=34.76 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+||=+|+| .|..+..+++..-...++++|.++...+.++..-.. .++..+-.............+|+++-
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-----ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-----EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 367788888875 455566666553212488899999888888765210 11100000000001112235898874
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. .. -...+..+.+.|+++|.+++...
T Consensus 194 ~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 194 F-----SG---ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred C-----CC---ChHHHHHHHHHhcCCCEEEEecc
Confidence 2 21 12467778899999999988663
No 330
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.47 E-value=2.1 Score=33.55 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCH
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISP 113 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~ 113 (218)
....++...+|+|+.+|.++.++.+++ ..|+++|--+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~ 243 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP 243 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcc--eEEEEeccch
Confidence 445788999999999999999999876 6999999644
No 331
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.39 E-value=0.93 Score=35.55 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=42.3
Q ss_pred cCCCcEEEEecCCCchhHHHHhhcC-----CccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNFIFPLLSWS-----KICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDI 142 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~ 142 (218)
..+...++|+|||.|.++..++... +...++.||-.......=. ...... ..+.-+.+|+.+.++
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccch
Confidence 3566799999999999999998765 4568899996443221111 111111 356666778877654
No 332
>KOG3924|consensus
Probab=91.38 E-value=0.43 Score=39.27 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=70.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC----------CcccCCCceEEeccCCCccccc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN----------PLYDASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~----------~~~~~~~i~~~~~d~~~~~~~~ 144 (218)
...++.....|+|+|.|+.....+..+....-+|+++....-..+..+ +...+..+..+++++.......
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 456788899999999999988887664333556666555444443332 2223456778888887755433
Q ss_pred CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 145 QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 145 ~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.+.. ..++|+.+.+. ++|+...+.- ++..-+++|-.++-.
T Consensus 268 eI~~-eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 268 EIQT-EATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISS 307 (419)
T ss_pred HHhh-cceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEecc
Confidence 3333 56788876653 3444444444 778888888877654
No 333
>PRK11524 putative methyltransferase; Provisional
Probab=91.37 E-value=0.29 Score=38.93 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=36.4
Q ss_pred CceEEeccCCCcccccCCCCCcccEEEechhhcC------C----Cc----chHHHHHHHHHHhccCCeEEEEE
Q psy1107 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA------I----HP----NKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 129 ~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~------~----~~----~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+..++++|..+. ...++++++|+|++.-.... . .. +....++..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~--l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTE--LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHH--HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 445677776652 13456678999988432110 0 00 11246889999999999999874
No 334
>KOG2918|consensus
Probab=91.35 E-value=4.3 Score=32.60 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=73.7
Q ss_pred HhhhcCCCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCC--cc--------------------cCC
Q psy1107 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNP--LY--------------------DAS 128 (218)
Q Consensus 73 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~--~~--------------------~~~ 128 (218)
.+.+.....+|+.+|||.-.....+...+ +...++-+|+++.....+.... .. ..+
T Consensus 81 Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~ 160 (335)
T KOG2918|consen 81 FLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSG 160 (335)
T ss_pred HHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccC
Confidence 33445677899999999998888887765 5568888898776655552110 00 013
Q ss_pred CceEEeccCCCccccc------CCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 129 KMNVFPCDVTEDDILN------QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 129 ~i~~~~~d~~~~~~~~------~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.+...+|+.+..... ....+-.-++++-.++.+++|+.-..+++-+.......+.+..-...+.|
T Consensus 161 ~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D 232 (335)
T KOG2918|consen 161 RYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPND 232 (335)
T ss_pred ceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCC
Confidence 4455556665432110 11112234556666888998877777888777766666555544444333
No 335
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.29 E-value=1.6 Score=34.96 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.++|=+||| .|.++.++++......+.++|.++..++.+... .+ .|..+ . ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~~--i~~~~-----~-~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------EV--LDPEK-----D-PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------cc--cChhh-----c-cCCCCCEEEEC
Confidence 45678888886 667777777654322477788888776666432 01 11111 0 12358988843
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.. -...+..+.+.|+++|.+++...
T Consensus 208 -----~G---~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 -----SG---DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CC---CHHHHHHHHHhhhcCcEEEEEee
Confidence 21 12456778899999999998654
No 336
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.20 E-value=0.84 Score=35.94 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
-.+..|+-+| ..-..++.++..+-.-++..+|+++..++...+-++..+ .++..+..|+.++- +..+ ..+||+++.
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~pl-pe~~-~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPL-PEDL-KRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccC-hHHH-HhhCCeeec
Confidence 3567899998 333344444443433499999999999999988877777 45888888887721 1112 258998875
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCC---eEEEEEe
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSG---GIILFRD 189 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~g---G~li~~~ 189 (218)
. ....+ .....++.+-...||.- |++.+.-
T Consensus 228 D-PpeTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 D-PPETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred C-chhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 2 11111 23445666666677665 6666643
No 337
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.68 E-value=3.7 Score=33.50 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=58.2
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeC---CHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDI---SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~---s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
.++.+||=+|+| .|.++.++++.. .+++++++. ++...+.+++.-. .++ +..+.+.........+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga------~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA------TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC------EEe--cCCccchhhhhhcCCCCE
Confidence 366788888886 566677776654 348988886 6777787775411 111 111111000001236898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
|+-. .. -...+..+.+.|+++|.+++....
T Consensus 242 vid~-----~g---~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEA-----TG---VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEEC-----cC---CHHHHHHHHHHccCCcEEEEEecC
Confidence 8853 21 123677888999999999876543
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.61 E-value=1.4 Score=39.24 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=63.2
Q ss_pred CcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 80 EGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 80 ~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..+|+=+||| .|......... .+..++.+|.+++.++.+++. ....+.+|.++.+......-.+.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE-
Confidence 3577777777 34433332222 124899999999999988753 35678899998766544444467877763
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.+.++....+-...+.+.|+-.+++.......
T Consensus 472 ----~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 472 ----IDDPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred ----eCCHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 22223333333445556787777776644333
No 339
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.38 E-value=1.8 Score=33.87 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHH
Q psy1107 94 IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVK 173 (218)
Q Consensus 94 ~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~ 173 (218)
+..+.+.++..+|+++|.++..++.+.+.-. +.-...+. ..+ ..+|+|+.. .|++....+++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----~~~~~~~~------~~~--~~~Dlvvla-----vP~~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-----IDEASTDI------EAV--EDADLVVLA-----VPVSAIEDVLE 63 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----SSEEESHH------HHG--GCCSEEEE------S-HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----eeeccCCH------hHh--cCCCEEEEc-----CCHHHHHHHHH
Confidence 4556667777899999999999999976511 10000100 011 146888863 45566778888
Q ss_pred HHHHhccCCeEEE
Q psy1107 174 NLFIMLKSGGIIL 186 (218)
Q Consensus 174 ~~~~~Lk~gG~li 186 (218)
++...+++|+.+.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 8888888887554
No 340
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.07 E-value=1.7 Score=36.12 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
....++.+||-|.+ .|..+..++..+|. +|++||+|+..+..+.=+
T Consensus 31 L~i~~~d~vl~ItS-aG~N~L~yL~~~P~-~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 31 LNIGPDDRVLTITS-AGCNALDYLLAGPK-RIHAVDLNPAQNALLELK 76 (380)
T ss_pred hCCCCCCeEEEEcc-CCchHHHHHhcCCc-eEEEEeCCHHHHHHHHHH
Confidence 56678889999954 56666666777774 999999999887766543
No 341
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.02 E-value=1.7 Score=34.96 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~D 152 (218)
..++.+||..|+| .|..+..++... ..++++++.++...+.++..- .. .++.. .+... ........+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~-~~~~~--~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----AD-EVLNS--LDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CC-EEEcC--CCcCHHHHHHHhcCCCce
Confidence 4566788888876 477777777654 357999999998888876531 11 11111 11000 0112334689
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+++.. . .....+..+.+.|+++|.++....
T Consensus 235 ~vid~-----~---g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 235 VIFDF-----V---GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEEEC-----C---CCHHHHHHHHHHhhcCCEEEEECC
Confidence 88742 1 113467788899999999987643
No 342
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.79 E-value=2.1 Score=37.60 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=57.7
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..++=+||| ..+..+++.. .+..++.+|.+++.++.+++. ....+.+|.++........-.+.|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~- 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence 455656665 4555555431 124899999999998888753 47788999998655443333478866542
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+.++....+-.+.+...|...++....
T Consensus 489 ----~~~~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 489 ----IPNGYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred ----cCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 1211222222223344567777777653
No 343
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.42 E-value=6.1 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=42.1
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..+++|+.||.|.+..-+...+- -.+.++|+++.+.+.-+.+.... ...+.+..|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCCC-CccceeccChhh
Confidence 56999999999999988877653 36788999999988887774211 233444555554
No 344
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.37 E-value=2 Score=35.11 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~ 149 (218)
...++.+||=.|+| .|..+.++++.. .. +++++|.++...+.++..-. . .++ +..+.+. .......
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga----~-~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA----T-HTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC----c-eEE--cCCCcCHHHHHHHHhCCC
Confidence 34567888888875 456666676654 24 59999999999888875411 1 111 1111111 0111223
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
.+|+|+-. .. . ...+..+.+.+++||.+++...
T Consensus 245 g~d~vid~-----~g--~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDA-----VG--R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEEC-----CC--C-HHHHHHHHHHhccCCEEEEECC
Confidence 58988742 21 1 2356677889999999987654
No 345
>KOG1201|consensus
Probab=88.75 E-value=1.1 Score=35.71 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=52.8
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC------CCCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~~~ 149 (218)
.+..||==|.|+| ..+.++++++ +.+...|++........+..+.. ++++...||+.+.+-... -.-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~-g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKI-GEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhc-CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678888888877 4566667766 47888998887665555544333 378999999988642111 1225
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
..|+++.+..+
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 78888886643
No 346
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.36 E-value=6.9 Score=31.67 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=57.8
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
...++.+||=.|+| .|..+.++++.. .+++++++.++...+.+++.-. . ++ .+..+ . ....+|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga---~--~v--i~~~~----~--~~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGA---A--SA--GGAYD----T--PPEPLDAA 227 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCC---c--ee--ccccc----c--CcccceEE
Confidence 34567899988875 455566666553 3579999999988888876521 1 11 11111 0 11247766
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+.... . ...+....+.|+++|.+++...
T Consensus 228 i~~~~---~-----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAP---A-----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EECCC---c-----HHHHHHHHHhhCCCcEEEEEec
Confidence 53211 1 2367788899999999988664
No 347
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.94 E-value=3 Score=34.32 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=57.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~ 151 (218)
..++.+||=.|+| .|..+..+++.. .+ .++++|.++...+.++..-. ..++ +..+.+.. .....+.+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga-----~~~i--~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGA-----TATV--NAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCC-----ceEe--CCCchhHHHHHHHHhCCCC
Confidence 4566788878876 456666666553 24 69999999999988875411 1111 11111100 01112258
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+-. .. ....+..+.+.|+++|.+++...
T Consensus 261 d~vid~-----~G---~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 261 DYAFEM-----AG---SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CEEEEC-----CC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence 988842 11 12456777889999999887653
No 348
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=87.75 E-value=11 Score=32.59 Aligned_cols=44 Identities=14% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCcEEEEecCCCchhHHHHhhc---C-CccEEEEEeCCHHHHHHHHhC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW---S-KICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~---~-~~~~v~~~D~s~~~~~~~~~~ 122 (218)
+...+.|+.||+|.+....... + ....++|.+..+.+...+..+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mn 264 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMN 264 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHH
Confidence 4568999999999998765432 1 123689999999998888876
No 349
>KOG1098|consensus
Probab=86.69 E-value=1.1 Score=39.31 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=63.5
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCC-ccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~-~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~~~ 149 (218)
....+...|||+||-+|.|+...++..| ..-|+|+|+-|-. -.+++.-.+.|++...... .+..-
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----------p~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----------PIPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----------cCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 4456788999999999999977776654 3478999985521 1134444445554432111 11122
Q ss_pred cccEEEechhhcCCCc----------chHHHHHHHHHHhccCCeEEEEEecCCCchhh
Q psy1107 150 SVDIATLIFVLSAIHP----------NKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~ 197 (218)
+.|+|+.-+. +.+.. ......++.+...|..||.++--.+...+...
T Consensus 110 ~advVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ 166 (780)
T KOG1098|consen 110 KADVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNG 166 (780)
T ss_pred CCcEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchH
Confidence 4476664221 11110 11224556667888899986665555555543
No 350
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.32 E-value=4.9 Score=31.93 Aligned_cols=89 Identities=18% Similarity=0.037 Sum_probs=53.5
Q ss_pred cEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|+=+|.| -|.++..+...+....+++.|.+....+.+...- +.....+ + . ........|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg------v~d~~~~--~--~-~~~~~~~aD~Viva- 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG------VIDELTV--A--G-LAEAAAEADLVIVA- 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC------ccccccc--c--h-hhhhcccCCEEEEe-
Confidence 467778877 3445556666677668899999998888877541 1111100 0 0 01112247888874
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
.|......+++++...|++|.++
T Consensus 72 ----vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 72 ----VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ----ccHHHHHHHHHHhcccCCCCCEE
Confidence 34345567778887778888633
No 351
>PRK13699 putative methylase; Provisional
Probab=86.23 E-value=0.94 Score=34.80 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=32.2
Q ss_pred EEeccCCCcccccCCCCCcccEEEechhhc----C-----CC----cchHHHHHHHHHHhccCCeEEEEE
Q psy1107 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLS----A-----IH----PNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 132 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~----~-----~~----~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
++++|..+ +...++++++|+|+..-... . +. .+-...++.++.++|||||.+++.
T Consensus 4 l~~gD~le--~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 4 FILGNCID--VMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred EEechHHH--HHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44455443 12356667778777642211 0 00 012357889999999999988763
No 352
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.20 E-value=2.4 Score=34.12 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
++.+|.=+|.| .|..+..++... .+.|+.+|.|...+......+. .+++.......+ +.... .+.|+++..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~---~rv~~~~st~~~--iee~v--~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG---GRVHTLYSTPSN--IEEAV--KKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC---ceeEEEEcCHHH--HHHHh--hhccEEEEE
Confidence 45677778888 566676776543 4699999999988877766533 345554443322 11111 268998875
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
-.+... ..+.-+.+++.+.+|||+.++=
T Consensus 239 VLIpga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 239 VLIPGA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEecCC--CCceehhHHHHHhcCCCcEEEE
Confidence 433333 3556677888999999996663
No 353
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.76 E-value=7.4 Score=32.84 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=81.9
Q ss_pred cCCCcEEEEecC-CCc------hhHHHHhhcCCccEEEEEe-CCHHHHHHHHhCCcccCCCceEEeccCCCccc------
Q psy1107 77 DVGEGVLLEVGC-GVG------NFIFPLLSWSKICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI------ 142 (218)
Q Consensus 77 ~~~~~~vLDiGc-G~G------~~~~~~~~~~~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------ 142 (218)
..++..|+=+|- |+| -++..+.+.+...-+++.| +.|.+++.++...... ++.|+..+-.....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc--CCceecCCCCCCHHHHHHHH
Confidence 345678888876 665 3344444445445677788 4567788887764432 45555442222111
Q ss_pred ccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh---hhccCCCCccCccceeccCC
Q psy1107 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA---QMRFKPGHKISENLYMRQDK 216 (218)
Q Consensus 143 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 216 (218)
...+....+|+|++--.-.+--++..-.-+..+...++|.=.|++.|-...... -..|.....++...--|-||
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 112334578999986654443345566677888999999999999884433322 13345555566555555555
No 354
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.74 E-value=1.2 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=24.1
Q ss_pred EecCCCc--hhHHHHh--hcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 85 EVGCGVG--NFIFPLL--SWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 85 DiGcG~G--~~~~~~~--~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
|||++.| .....++ ...+..+++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 346777999999999988877766
No 355
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.44 E-value=3.4 Score=35.79 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=60.7
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-------------ccc
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-------------DIL 143 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------------~~~ 143 (218)
.++.+++=+|+| .|..+..++... .+.++++|.++..++.++..- ..++..|..+. +..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lG------a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMG------AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC------CeEEeccccccccccccceeecCHHHH
Confidence 357899999998 455555555542 357999999999988887641 12222222110 000
Q ss_pred ----cCCC--CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 144 ----NQVP--HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 144 ----~~~~--~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
..++ -..+|+|+....+..-+ .+.-+.+++.+.+|||+.++=
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 0011 23689998765443332 223466778899999997664
No 356
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.42 E-value=7.7 Score=31.51 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=56.2
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-cccccCCCCCccc-
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-DDILNQVPHNSVD- 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~D- 152 (218)
..++.+||=.|+| .|..+..+++.. .. .+++++.++...+.++..-. ..++..+-.. ..+........+|
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGA-----MQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC-----ceEecCcccCHHHHHHHhcCCCCCe
Confidence 3467788888875 455666666553 24 47889999988888764311 1111111000 0011112223567
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+- ... -...+..+.+.|++||.+++...
T Consensus 232 ~v~d-----~~G---~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 232 LILE-----TAG---VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEEE-----CCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 5553 221 12467778899999999998753
No 357
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.58 E-value=5.5 Score=30.56 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc---CCCCCcccE
Q psy1107 78 VGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN---QVPHNSVDI 153 (218)
Q Consensus 78 ~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~~~D~ 153 (218)
.++.+||-.|+|. |..+..++... ..++++++.++...+.++.... ..++ +........ ......+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-----DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-----ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 5678999999985 66666666553 2689999999888777754311 0111 111110000 112346899
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.. .. . ...+..+.+.|+++|.++...
T Consensus 205 vi~~-----~~--~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDA-----VG--G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEC-----CC--C-HHHHHHHHHhcccCCEEEEEc
Confidence 8853 21 1 135666778899999988755
No 358
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.64 E-value=5.9 Score=31.98 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=56.8
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc---ccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED---DILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~~~ 151 (218)
..++.+||=.|+| .|..+.++++.. .++ +++++.++...+.+++.-. ..++ +..+. .+........+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga-----~~~i--~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGA-----DFVI--NSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-----CEEE--cCCcchHHHHHHHhCCCCC
Confidence 3557788888875 455566666553 245 9999999988888865411 1111 11110 01011122368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+|+.. .. -...+..+.+.|+++|.+++...
T Consensus 233 d~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIEC-----SG---NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEEcC
Confidence 988842 11 12345667789999999987553
No 359
>PLN02740 Alcohol dehydrogenase-like
Probab=83.43 E-value=11 Score=31.23 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=58.0
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~ 151 (218)
...++.+||=+|+| .|..+..+++..-..+++++|.++..++.+++.-. . .++...-.+.++ ......+.+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~-~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----T-DFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----c-EEEecccccchHHHHHHHHhCCCC
Confidence 34567889988886 45556666655322269999999999998876411 1 122111000000 011112258
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
|+|+-. .. -...+..+...++++ |.+++...
T Consensus 270 dvvid~-----~G---~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 270 DYSFEC-----AG---NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CEEEEC-----CC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 988742 21 124566777788886 88877554
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.89 E-value=6.4 Score=32.01 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=45.7
Q ss_pred CcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 80 EGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
+.++|=.|++.| ++..+ ++.+ .+++.++-++..++.........+.++.++.+|+.+..-.... .-+
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRG--AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 457777776544 33333 3444 5888888887766655443333345788889999875321110 014
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++.+..
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6898887553
No 361
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.26 E-value=6.7 Score=32.74 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred cEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 81 GVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 81 ~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.+||=|||| .|......+......+|+..|-+....+.+..... .++....+|+.+.+-....-. .+|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~-~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVALIK-DFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHHHh-cCCEEEE
Confidence 478999996 44443333223333699999999888777765532 378899999887522111111 3588875
No 362
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.18 E-value=13 Score=29.55 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
++.++|-.|++.| ..+..+++.+ .+++.++-++..++........ +..+..+.+|+.+..-... . .-+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG--AKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567887776544 2233333334 5888888888766655443221 2345666788887531110 0 114
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
.+|+++.+..+
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999886543
No 363
>PLN02827 Alcohol dehydrogenase-like
Probab=81.65 E-value=9.2 Score=31.66 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--ccc---ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDI---LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~---~~~~~~~ 149 (218)
...++.+||-.|+| .|..+.++++..-...++++|.++...+.++..-. . .++ +..+ ... ......+
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa----~-~~i--~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV----T-DFI--NPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----c-EEE--cccccchHHHHHHHHHhCC
Confidence 34567889888875 45555666654322258889988988888865411 1 111 1111 000 0111122
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+|+-. .. ....+..+.+.+++| |.+++...
T Consensus 263 g~d~vid~-----~G---~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 263 GADYSFEC-----VG---DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCEEEEC-----CC---ChHHHHHHHHhhccCCCEEEEECC
Confidence 58888742 21 123566778889998 99887543
No 364
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=80.97 E-value=7.2 Score=32.55 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=58.6
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec---cCCCcccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC---DVTEDDILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~~D 152 (218)
..++.+||=.|+| .|..+..+++..-...++++|.++..++.+++.-. . .+... ++.. .+........+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga----~-~v~~~~~~~~~~-~v~~~~~~~g~D 256 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC----E-TVDLSKDATLPE-QIEQILGEPEVD 256 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC----e-EEecCCcccHHH-HHHHHcCCCCCc
Confidence 4556677667775 55556666654322246677888888888876411 1 11111 1100 011112223589
Q ss_pred EEEechhhcC------CCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 153 IATLIFVLSA------IHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 153 ~i~~~~~l~~------~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
+++-...... .........+..+.+++++||.+++....
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 8875321100 00011124788889999999999986653
No 365
>PRK06701 short chain dehydrogenase; Provisional
Probab=80.74 E-value=8.5 Score=30.53 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHH-HHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPR-AVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----H 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~ 148 (218)
++.++|-.|++.| ..+..+++.+ .+++.++.+.. ..+.........+.++.++.+|+.+...... +. -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G--~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG--ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888876544 2333344444 47777766532 2222222222223567888999887532111 10 1
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++....
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 35788876543
No 366
>PRK08324 short chain dehydrogenase; Validated
Probab=80.68 E-value=9.5 Score=34.42 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=44.6
Q ss_pred CcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~ 151 (218)
+.++|=.|++ |..+..++.. ....+|+++|.++...+.+....... .++.++.+|+.+..-... + ..+.+
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4677877754 3333333322 11258999999887766554432211 367888899887532111 1 11368
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+|+....
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 98887553
No 367
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.64 E-value=15 Score=27.81 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~ 150 (218)
++.+||-.|++. ..+..+++. ....+|++++-++.....+....... .+++++.+|+.+..-... + .-+.
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356888888753 333333322 12358999988877655443221111 357888999887532110 0 0134
Q ss_pred ccEEEechhhcCCC-cch--------------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIH-PNK--------------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~-~~~--------------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|.++......... ..+ ...+++.+...++++|.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67777644321111 011 1123455556667788777655
No 368
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=80.39 E-value=2.4 Score=30.14 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=30.8
Q ss_pred CcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~ 139 (218)
..-|||+|-|+|..=..+.+..|+.+|+++|-.-. ....-.+..-.++.+|+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~------~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALA------CHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecc------cCCCCCCchHheeeccHHH
Confidence 47899999999999989999999999999995221 1111123456677777755
No 369
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.79 E-value=18 Score=28.92 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=59.3
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccC-CCc-ccccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDV-TED-DILNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~-~~~-~~~~~~~~~~~ 151 (218)
...++.+||=.|. |.|..+.++++.. ..++++++.++...+.++.. . .. .++..+- ... ..........+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-G---a~-~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-G---FD-VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-C---CC-EEEeccccccHHHHHHHhCCCCe
Confidence 3456778888874 4778888887763 35899999888888888653 1 11 1111110 000 00011122368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+. ... ...+..+.+.|+++|.++...
T Consensus 209 dvv~d-----~~G----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYFD-----NVG----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEEE-----CCC----HHHHHHHHHHhCcCcEEEEec
Confidence 98874 221 124577889999999998754
No 370
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.60 E-value=12 Score=28.56 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=52.6
Q ss_pred CcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCH-HHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISP-RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~~ 150 (218)
+.++|-.|+. |..+..++.. ....+|++++-+. ...+.........+.++.++.+|+.+.+-.... .-+.
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4678877764 3344444332 1224777776543 222222111111234677888998875321110 0135
Q ss_pred ccEEEechhhcCCC---cc--------hHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIH---PN--------KFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~---~~--------~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|+++......... +. -...+++.+.+.++.+|.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 78777644221110 00 12355666666666666666543
No 371
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.58 E-value=17 Score=29.16 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=50.9
Q ss_pred cEEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.+|.=||+|. | .++..+...+...+++++|.++...+.++..- ..... ..+.. ... ...|+|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~~~~~-~~~~~-----~~~--~~aDvViia- 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----LGDRV-TTSAA-----EAV--KGADLVILC- 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----CCcee-cCCHH-----HHh--cCCCEEEEC-
Confidence 5788888884 3 33344444443238999999998877776431 00000 01110 111 247888863
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEE
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
.|+.....++..+...+++++.++.
T Consensus 74 ----vp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 74 ----VPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ----CCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 3433445667777778888875544
No 372
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.28 E-value=13 Score=28.75 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=43.8
Q ss_pred CCCcEEEEecCCCchhHHHHhh----cCCccEEEEEeCCHHH-HHHHHhCCcccC-CCceEEeccCCCcccc----c-CC
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLS----WSKICYIHACDISPRA-VNFFKLNPLYDA-SKMNVFPCDVTEDDIL----N-QV 146 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~----~~~~~~v~~~D~s~~~-~~~~~~~~~~~~-~~i~~~~~d~~~~~~~----~-~~ 146 (218)
..+.+||-.|++.| .+..+++ .+ ..+|+.++-++.. ++.+.+.....+ .+++++.+|+.+..-. . ..
T Consensus 6 ~~~~~vlItGas~g-iG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGGTSE-IGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcCCcH-HHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 45678888888544 4444443 32 2588888766543 333322222222 3788999999875311 1 11
Q ss_pred CCCcccEEEech
Q psy1107 147 PHNSVDIATLIF 158 (218)
Q Consensus 147 ~~~~~D~i~~~~ 158 (218)
..+..|+++...
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 124789877644
No 373
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.79 E-value=12 Score=30.12 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=55.8
Q ss_pred CCcEEEEecCCC-chhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc-CCCCCcccEEE
Q psy1107 79 GEGVLLEVGCGV-GNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIAT 155 (218)
Q Consensus 79 ~~~~vLDiGcG~-G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~~D~i~ 155 (218)
++.+||-.|||. |..+..+++.. .. .+++++.++...+.++.... -.++. .....+.. ....+.+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-----~~vi~--~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-----DETVN--LARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-----CEEEc--CCchhhhhhhccCCCccEEE
Confidence 677888888764 66666676653 24 78999988888887665311 11111 11100000 11123589888
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.... ....+..+.+.|+++|.++...
T Consensus 237 d~~g--------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASG--------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCC--------CHHHHHHHHHHHhcCCEEEEEe
Confidence 5311 1235677889999999988754
No 374
>PRK06139 short chain dehydrogenase; Provisional
Probab=78.73 E-value=5.7 Score=32.32 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
++.++|=.|++.| ..+..+++.+ .+++.++-++..++.........+.++.++.+|+.+.+-...+ ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3567777776544 2233344444 5888888888776655443333345677888998875321111 114
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899888654
No 375
>PRK06128 oxidoreductase; Provisional
Probab=78.61 E-value=9.9 Score=30.24 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=53.2
Q ss_pred CcEEEEecCCCchhHHHHh----hcCCccEEEEEeCCHH--HHHHHHhCCcccCCCceEEeccCCCcccccC-C-----C
Q psy1107 80 EGVLLEVGCGVGNFIFPLL----SWSKICYIHACDISPR--AVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----P 147 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~----~~~~~~~v~~~D~s~~--~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~ 147 (218)
++++|=.|++. .++..++ +.+ .+|+.+..+.. ..+.........+.++.++.+|+.+...... + .
T Consensus 55 ~k~vlITGas~-gIG~~~a~~l~~~G--~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGADS-GIGRATAIAFAREG--ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCCC-cHHHHHHHHHHHcC--CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46788887644 3443443 334 46666554322 1222211112223467788899987532111 0 0
Q ss_pred CCcccEEEechhhcC-------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSA-------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~-------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++.+..... ++.+++. .+++.+...++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 136899887654321 1112222 34445566667788777643
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=78.21 E-value=9.3 Score=29.25 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred EEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 82 VLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 82 ~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
+++=+|||. | ..+..+.+.+ ..++.+|.++..++..... ....+.+++|.++...+....-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 566677773 2 3333343433 3899999999987774331 125778889988876655555567898887
No 377
>PRK07985 oxidoreductase; Provisional
Probab=77.97 E-value=9.2 Score=30.40 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCC--HHHHHHHHhCCcccCCCceEEeccCCCcccccC------CC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDIS--PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ------VP 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------~~ 147 (218)
.+.++|-.|++.| ..+..+++.+ .+++.++.+ ....+.........+.++.++.+|+.+.+-... -.
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G--~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREG--ADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC--CEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3468888886543 2333344444 467776543 222222222222223467788899987531110 01
Q ss_pred CCcccEEEechhhc-------CCCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLS-------AIHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~-------~~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++...... ..+++++. .+++.+.+.++.+|.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 14578887654321 12222322 33444556666778777643
No 378
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.74 E-value=5.9 Score=31.68 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=56.9
Q ss_pred eCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 110 DISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 110 D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
...+...+.++.+. .++.+++.|+.+. ...-+.++.|.+++..+-.+++......++.++.+-+.+|..+++..
T Consensus 293 yl~~~~YEsir~n~----~RV~ihha~~iE~--l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 293 YLDEGVYESIRQNL----RRVAIHHADIIEL--LAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhchhhHHHHHhhh----hheeeecccHHHH--hccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 34455555555443 3578888888762 23456678999999999999998889999999999999999999965
No 379
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.50 E-value=12 Score=30.49 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=34.1
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
...++.+||=.|+|. |..+..++... ..+++++|.++..++.++..
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh
Confidence 345678999999863 66666666654 35899999999988888654
No 380
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.46 E-value=15 Score=29.82 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=56.7
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~~ 151 (218)
..++.+||=.|+| .|..+..+++......+++++.++...+.++..-. ..++ +....+ +........+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~-----~~~v--~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA-----TDIV--DYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-----ceEe--cCCCCCHHHHHHHHhCCCCC
Confidence 4566788777875 45566666655322268999999888888775311 1111 111111 0011122368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+++.. .. -...+..+.+.|+++|.++...
T Consensus 237 d~vld~-----~g---~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 237 DAVIIA-----GG---GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEec
Confidence 988842 11 1246678888999999988654
No 381
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.15 E-value=7.2 Score=31.21 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=33.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
.+...+.+|+-+|+|--... .+..+.| .+|.++|+++..+.+.+-+
T Consensus 59 m~~g~ghrivtigSGGcn~L-~ylsr~P-a~id~VDlN~ahiAln~lk 104 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNML-AYLSRAP-ARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred HhcCCCcEEEEecCCcchHH-HHhhcCC-ceeEEEeCCHHHHHHHHHH
Confidence 34567789999998854444 4445667 4999999999887766543
No 382
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.12 E-value=32 Score=29.11 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=54.6
Q ss_pred EEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|+=+|+ |..+..++.. ..+..++++|.++..++.+... ..+.++.+|..+........-..+|.+++..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~- 73 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAVT- 73 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-
Confidence 4566666 5566666553 1235899999999987777642 2366777887765433333334688777632
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
+.+.....+....+.+.|.-.+++.
T Consensus 74 ----~~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 74 ----DSDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred ----CChHHHHHHHHHHHHhcCCCeEEEE
Confidence 2223344444445555455455554
No 383
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.11 E-value=13 Score=28.22 Aligned_cols=78 Identities=6% Similarity=-0.078 Sum_probs=43.2
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~~ 151 (218)
+.++|=.|+ +|..+..++... ...++++++-++.............+.++.++.+|+.+...... +. -+..
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 467776665 455554544321 12478888877765554433322223468888999887532111 00 1367
Q ss_pred cEEEech
Q psy1107 152 DIATLIF 158 (218)
Q Consensus 152 D~i~~~~ 158 (218)
|+++...
T Consensus 86 d~vi~~a 92 (250)
T PRK12939 86 DGLVNNA 92 (250)
T ss_pred CEEEECC
Confidence 8887754
No 384
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.95 E-value=27 Score=29.57 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
+..+++=+|+| ..+..+++.. .+..++.+|.++..++.++... ..+.++.+|..+...+....-..+|.|++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 35678877775 4444444331 2348999999999888776542 24667888887754433333346888775
No 385
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.60 E-value=21 Score=30.18 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCcEEEEecCCC-chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCGV-GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG~-G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.+|+=+|+|. |......++.. .++|+++|.++.....|... + .... +..+ .. ...|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G--~~~~--~~~e-----~v--~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----G--YEVM--TMEE-----AV--KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----C--CEEc--cHHH-----HH--cCCCEEEE
Confidence 4688999999994 55554444432 35899999999887777653 1 1111 1111 11 14698885
Q ss_pred chhhcCCCcchHHHHHHH-HHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKN-LFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~-~~~~Lk~gG~li~~~~ 190 (218)
.. ... .++.. ..+.+++||.++....
T Consensus 264 at-------G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TT-------GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC-------CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 31 122 34544 4889999999877653
No 386
>KOG2360|consensus
Probab=76.47 E-value=3.5 Score=34.07 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=49.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccC-CCceEEeccCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDA-SKMNVFPCDVTE 139 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~-~~i~~~~~d~~~ 139 (218)
..+.++.+|+|.+|-+|.-+..++..- +..+++++|.+....+..++.....+ ..+....+|+..
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN 275 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence 445667899999999998888887652 35699999999988887777655444 456666788776
No 387
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=75.47 E-value=8.5 Score=29.81 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
+..+++|+-||+|..+..+... ...++.-|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHH
Confidence 6889999999999999887653 348999999998777766
No 388
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.23 E-value=19 Score=27.90 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=42.1
Q ss_pred CCcEEEEecCCCc-hhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCC
Q psy1107 79 GEGVLLEVGCGVG-NFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G-~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~ 149 (218)
+++++|-.|+++| ..+..++... ...+++.++.+....+.+.+..... ....++.+|+.+..-.. .. .-+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-DAPIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-ccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 4568888888752 4444444331 1247887777654322222211111 23457788988753111 11 114
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 88 ~ld~lv~nAg 97 (258)
T PRK07533 88 RLDFLLHSIA 97 (258)
T ss_pred CCCEEEEcCc
Confidence 6899887654
No 389
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.14 E-value=25 Score=27.77 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=48.6
Q ss_pred EEEEecCCC--chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGV--GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~--G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|.=||+|. |.++..+...+ .+|+++|.++..++.+...-. +.....+. .. -...|+|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~-----~~~~~~~~------~~--~~~aDlVila-- 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGL-----VDEASTDL------SL--LKDCDLVILA-- 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCC-----cccccCCH------hH--hcCCCEEEEc--
Confidence 466678773 34444454443 489999999988887765411 10000000 11 1257888863
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGII 185 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~l 185 (218)
+|+.....+++.+...++++.++
T Consensus 65 ---vp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 ---LPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCcEE
Confidence 45455566778888888777433
No 390
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=75.02 E-value=12 Score=31.00 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=39.6
Q ss_pred EEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 83 LLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 83 vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
|+=+|+| .|......+...... +++..|.+...++...... ...++.+...|+.+..-...+- ...|+|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~-~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELL-RGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHH-TTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHH-hcCCEEEE
Confidence 5667884 343333333333333 8999999999877776543 3357899999988753222221 24588885
No 391
>KOG0780|consensus
Probab=74.94 E-value=22 Score=29.82 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=74.8
Q ss_pred CCCcEEEEecC-CCch------hHHHHhhcCCccEEEEEe-CCHHHHHHHHhCCcccCCCceEEec-cCCCc-cc----c
Q psy1107 78 VGEGVLLEVGC-GVGN------FIFPLLSWSKICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPC-DVTED-DI----L 143 (218)
Q Consensus 78 ~~~~~vLDiGc-G~G~------~~~~~~~~~~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~----~ 143 (218)
.++..|+=+|- |+|- ++..+.+.+....+++-| +.+.+.+..+.++... .+.|+.. +-.++ .+ .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~--~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA--RVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh--CCeeEecccccchHHHHHHHH
Confidence 34556777765 5552 233333334444566666 4456777777764422 3444432 11111 00 1
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhh---hccCCCCccCccceeccCC
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ---MRFKPGHKISENLYMRQDK 216 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 216 (218)
..+..+.||+|++...-.|-.....-.-+..+.+.++|+-.+++.|-....+.. ..|+....++..+--|-||
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEeccc
Confidence 235567899999976655553333334455677889999999998866555332 2334444555555445444
No 392
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.79 E-value=31 Score=27.57 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=57.4
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc--cCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL--NQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~~~~ 151 (218)
...++.+||-.|+| .|..+..+++... .+ +++++.++...+.++.... . .++.. ...... .......+
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~----~-~~~~~--~~~~~~~~~~~~~~~v 227 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKLGA----T-ETVDP--SREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCC----e-EEecC--CCCCHHHHHHhcCCCC
Confidence 34567788888865 3566666666532 34 8888888888877754311 1 11111 111000 01123468
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+++.. .. ....+..+.+.|+++|.++....
T Consensus 228 d~v~~~-----~~---~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 228 DVVIEA-----TG---VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred cEEEEC-----CC---ChHHHHHHHHHHhcCCEEEEEec
Confidence 999852 11 12466777889999999887643
No 393
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=74.60 E-value=17 Score=29.29 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=55.9
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~~ 151 (218)
..++.+||-.|+| .|..+..+++......+++++.+....+.++..-. ..++. ..+.. +....+...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-----~~vi~--~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-----TDIIN--PKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-----cEEEc--CCcchHHHHHHHHcCCCCC
Confidence 4566788877765 46677777765421278888888877777665310 11111 11110 0011223468
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+++.. .. ....+..+.+.|+++|.++...
T Consensus 238 d~vld~-----~g---~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 238 DCVIEA-----VG---FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cEEEEc-----cC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 988742 11 1136677788999999888654
No 394
>KOG2811|consensus
Probab=74.19 E-value=5.8 Score=32.63 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEE---EeCCHHHHHHHHhCCcccCCCceEEeccCCCcc
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHA---CDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~---~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 141 (218)
.+...++|+|||.|.++..++...+...++. +|=....+..-..........+.-+.+|+.+..
T Consensus 181 ~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 181 APSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLK 247 (420)
T ss_pred CCcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhcC
Confidence 3347899999999999999887766555555 554333333222222222234555566766643
No 395
>PRK06940 short chain dehydrogenase; Provisional
Probab=73.90 E-value=18 Score=28.32 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=43.4
Q ss_pred EEEEecCCCchhHHHHhhcC-CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC-CCCcccEEE
Q psy1107 82 VLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV-PHNSVDIAT 155 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~-~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-~~~~~D~i~ 155 (218)
.+|=-|+ |.++..+++.. ...+|+.++.+...++.........+.++.++.+|+.+..-.. .. ..+.+|+++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li 81 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLV 81 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4454554 34555555432 2358999988876555443322222346788899998753211 11 124689988
Q ss_pred echhh
Q psy1107 156 LIFVL 160 (218)
Q Consensus 156 ~~~~l 160 (218)
.+..+
T Consensus 82 ~nAG~ 86 (275)
T PRK06940 82 HTAGV 86 (275)
T ss_pred ECCCc
Confidence 76543
No 396
>KOG1209|consensus
Probab=73.63 E-value=24 Score=27.10 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=47.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc-------ccCCCCC
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI-------LNQVPHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~~~ 149 (218)
.+..||-.||..|..+..++..+ ..+.|+++--+-+....+... ..+.....|+.+++. ...++.+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-----~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-----FGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-----hCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 46789999999999988887653 235777765443333333322 135666777776542 1235778
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
+.|+.+.+..
T Consensus 81 kld~L~NNAG 90 (289)
T KOG1209|consen 81 KLDLLYNNAG 90 (289)
T ss_pred ceEEEEcCCC
Confidence 8898887543
No 397
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.53 E-value=28 Score=27.40 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=48.1
Q ss_pred EEEEecCCC--chhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEechh
Q psy1107 82 VLLEVGCGV--GNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159 (218)
Q Consensus 82 ~vLDiGcG~--G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 159 (218)
+|.=||+|. |.++..+...+....++++|.++...+.+...-. +.. ..+. .... ..|+|+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~-----~~~-~~~~------~~~~--~aD~Vil--- 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL-----VDE-IVSF------EELK--KCDVIFL--- 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC-----Ccc-cCCH------HHHh--cCCEEEE---
Confidence 466677763 2344444444433479999999988777754310 000 0111 1111 2688886
Q ss_pred hcCCCcchHHHHHHHHHHhccCCeEEE
Q psy1107 160 LSAIHPNKFSTVVKNLFIMLKSGGIIL 186 (218)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lk~gG~li 186 (218)
.+|+.....++..+.. ++++..++
T Consensus 65 --avp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 65 --AIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred --eCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 3455566677777777 77776444
No 398
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.51 E-value=17 Score=29.73 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=59.1
Q ss_pred cCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec----cCCCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC----DVTEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~----d~~~~~~~~~~~~~~ 150 (218)
..++.+||=.|+ |.|..+.++++.. .+++++++.++...+.++..... . .++.. ++.. .+ .....+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa---~-~vi~~~~~~~~~~-~i-~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGF---D-EAFNYKEEPDLDA-AL-KRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCC---C-EEEECCCcccHHH-HH-HHHCCCC
Confidence 456788988887 3778888887764 35899999888888877632111 1 11111 1100 01 1111236
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+++.. .. ...+..+.+.|+++|.+++..
T Consensus 229 vD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDN-----VG----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEEC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence 8988742 21 136677889999999988754
No 399
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.44 E-value=20 Score=28.29 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=50.5
Q ss_pred EEEEecCCC--chhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEec
Q psy1107 82 VLLEVGCGV--GNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLI 157 (218)
Q Consensus 82 ~vLDiGcG~--G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~ 157 (218)
+|.=||||. +.++..+.+.+ +..++++.|.++..++.+.+... +.. ..+..+ .. ...|+|++
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-----~~~-~~~~~e-----~~--~~aDiIiL- 69 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-----ITI-TTNNNE-----VA--NSADILIL- 69 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-----cEE-eCCcHH-----HH--hhCCEEEE-
Confidence 677888884 23333343333 23379999998888776654211 111 111111 01 14588886
Q ss_pred hhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 158 FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.++|.....+++.+...++++. +++.-
T Consensus 70 ----avkP~~~~~vl~~l~~~~~~~~-lvISi 96 (272)
T PRK12491 70 ----SIKPDLYSSVINQIKDQIKNDV-IVVTI 96 (272)
T ss_pred ----EeChHHHHHHHHHHHHhhcCCc-EEEEe
Confidence 3456777888888888777664 55543
No 400
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.39 E-value=28 Score=27.77 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=58.7
Q ss_pred cCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCcc
Q psy1107 77 DVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~ 151 (218)
..++.+||=.|+ |.|..+.++++.. .+++++++.++...+.++..-. -.++. ....++. .......+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga-----~~vi~--~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGF-----DAVFN--YKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-----CEEEe--CCCccHHHHHHHHCCCCc
Confidence 456778887773 5777788887764 3589999988888888876311 11111 1111110 11112468
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+.. .. ...+..+.+.|+++|.++...
T Consensus 213 d~vld~-----~g----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 213 DCYFDN-----VG----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEEEC-----CC----HHHHHHHHHhhccCCEEEEEc
Confidence 988742 21 145677889999999988653
No 401
>PRK12743 oxidoreductase; Provisional
Probab=73.31 E-value=21 Score=27.47 Aligned_cols=78 Identities=6% Similarity=-0.155 Sum_probs=40.8
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEe-CCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCCcc
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHNSV 151 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~~~ 151 (218)
.++|=.|++. .++..+++.. ...+|+.+. .+....+.+.......+.+++++.+|+.+..-... . .-+..
T Consensus 3 k~vlItGas~-giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 3 QVAIVTASDS-GIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4677777654 4444444331 124776664 33333333333222234578889999887532111 0 11367
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|++++...
T Consensus 82 d~li~~ag 89 (256)
T PRK12743 82 DVLVNNAG 89 (256)
T ss_pred CEEEECCC
Confidence 88887543
No 402
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.56 E-value=16 Score=26.05 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=51.4
Q ss_pred EEEEecCCCchhHHHH--hhcCCccEEEEEeCCHHHHHHHHhCCc---ccC-----CCceEEeccCCCcccccCCCCCcc
Q psy1107 82 VLLEVGCGVGNFIFPL--LSWSKICYIHACDISPRAVNFFKLNPL---YDA-----SKMNVFPCDVTEDDILNQVPHNSV 151 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~--~~~~~~~~v~~~D~s~~~~~~~~~~~~---~~~-----~~i~~~~~d~~~~~~~~~~~~~~~ 151 (218)
+|.=+|+|.+..+... +..+ .+|+....+++.++..+..-. ..+ .++.+ ..|+. ..+ ...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~-----~a~--~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE-----EAL--EDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH-----HHH--TT-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH-----HHh--Ccc
Confidence 3556777766543322 2333 488888888887776665322 111 12211 11211 111 246
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+|+. .+|....+.+++++...++++-.++...
T Consensus 71 d~Iii-----avPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 71 DIIII-----AVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp SEEEE------S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cEEEe-----cccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 88875 3454567789999999998887777644
No 403
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=72.52 E-value=29 Score=27.90 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=28.0
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCch
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~ 195 (218)
..+|+|+..--. .....++..+...+.+++.++....+....
T Consensus 71 ~~~D~vilavK~-----~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 71 PPCDWVLVGLKT-----TANALLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred CCCCEEEEEecC-----CChHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 368988864211 133467778888899999888776555443
No 404
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=72.16 E-value=20 Score=28.83 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=57.3
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccccCCCCCccc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDILNQVPHNSVD 152 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~~D 152 (218)
...++.+||-.|+| .|..+..+++.. +.+++++..++...+.++... . .+++...-.. ..+....+...+|
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g---~--~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG---A--DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC---C--CEEecCcccCHHHHHHHHhCCCCCC
Confidence 34567788888876 366777777653 368888888888877775431 1 1111110000 0011112333589
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+++.. .. -...+..+.+.|+++|.++...
T Consensus 230 ~vld~-----~g---~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 230 VVIDA-----TG---NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEEEC-----CC---CHHHHHHHHHHHhcCCEEEEEc
Confidence 88853 10 1235677788999999888654
No 405
>KOG0023|consensus
Probab=72.10 E-value=11 Score=30.62 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=58.5
Q ss_pred cCCCcEEEEecC-CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCC-CcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGC-GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT-EDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGc-G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~~~~~D~i 154 (218)
..|+..+-=+|. |-|+++..++++- ..+|+++|-+...-+.+-+.... -.|+. .+ +.+..... .+..|.+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGA----d~fv~--~~~d~d~~~~~-~~~~dg~ 250 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGA----DVFVD--STEDPDIMKAI-MKTTDGG 250 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCc----ceeEE--ecCCHHHHHHH-HHhhcCc
Confidence 356777766665 4899999998874 36999999998555555443221 12221 12 21111111 1134444
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+-.-+ .+ ....++.+..+||++|.+++....-.
T Consensus 251 ~~~v~--~~----a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 251 IDTVS--NL----AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ceeee--ec----cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 32110 01 22455667889999999999875543
No 406
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=72.09 E-value=32 Score=28.23 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc--cc---ccCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED--DI---LNQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~---~~~~~~ 148 (218)
...++.+||=.|+| .|..+..+++.. .. .++++|.++...+.++..-. . .++ |..+. ++ ......
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa----~-~~i--~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGA----T-DCV--NPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCC----C-EEE--cccccchHHHHHHHHHhC
Confidence 34567888888875 455566666553 24 69999999999888865311 1 111 11110 00 001112
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
+.+|+|+-. .. -...+..+.+.|+++ |.++....
T Consensus 255 ~g~d~vid~-----~g---~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFEC-----IG---NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEEC-----CC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence 368988742 21 124667778889887 98887653
No 407
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=72.08 E-value=17 Score=29.93 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--ccc---ccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDI---LNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~---~~~~~~~ 149 (218)
...++.+||=.|+| .|..+..+++..-..+++++|.++...+.+++.-. . ..+ |..+ ..+ ......+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga----~-~~i--~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA----T-DCV--NPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----C-eEE--cccccchhHHHHHHHHhCC
Confidence 34567888888886 45666666665321279999999999888866411 1 111 1110 000 0011112
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+++-. .. -...+..+.+.++++ |.+++...
T Consensus 255 g~d~vid~-----~G---~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 255 GVDYSFEC-----IG---NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCEEEEC-----CC---CHHHHHHHHHHhhcCCCeEEEEec
Confidence 58888742 21 123567777888886 98887654
No 408
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.98 E-value=7.9 Score=30.78 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=44.8
Q ss_pred CcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~ 151 (218)
+.++|=.|++.| .+..++.. ....+|++++-+...++.........+..+.++.+|+.+.+.... + .-+..
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV 118 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 467887776544 33333322 123589999988766555443322223457788899887532111 1 11367
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+++....
T Consensus 119 d~li~~AG 126 (293)
T PRK05866 119 DILINNAG 126 (293)
T ss_pred CEEEECCC
Confidence 98887543
No 409
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.59 E-value=44 Score=25.69 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=42.4
Q ss_pred CCcEEEEecCCC-chhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCC
Q psy1107 79 GEGVLLEVGCGV-GNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~-G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~ 149 (218)
.++++|-.|.++ +..+..++... ...+|+.++-+....+.+.+.. ..++.++.+|+.+..-.. .. .-+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 356788888763 34444444331 2257887766544333333221 235778889998753111 11 114
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
++|+++.+..
T Consensus 83 ~iD~lv~nAg 92 (252)
T PRK06079 83 KIDGIVHAIA 92 (252)
T ss_pred CCCEEEEccc
Confidence 6899887654
No 410
>PRK09291 short chain dehydrogenase; Provisional
Probab=71.47 E-value=12 Score=28.66 Aligned_cols=77 Identities=17% Similarity=0.031 Sum_probs=42.7
Q ss_pred cEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
.++|-.|++ |..+..++.. ....++++++-++...+.........+..+.++.+|+.+..-.........|+++...
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 367777764 4444444332 1235788887776655444433222334678888998775322111223688888754
No 411
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.18 E-value=47 Score=26.78 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=56.2
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC-----cccccCCCC
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE-----DDILNQVPH 148 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~~~ 148 (218)
...++.+||-.|+|. |..+..+++... .+ +++++.++...+.++.. .. . .++..+-.. ..+......
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~~-g~--~--~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKEL-GA--T--HTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHc-CC--c--EEeccccccchhHHHHHHHHhCC
Confidence 345677777777753 666666766532 35 88888888777777553 11 1 111111000 001112233
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
..+|+|+.. .. ....+..+.+.|+++|.++...
T Consensus 233 ~~~d~vld~-----~g---~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 233 KGPDVVIEC-----TG---AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 458999842 11 1125677788999999988654
No 412
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=71.13 E-value=28 Score=33.53 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
....+||+|.|.=.=...++. ++.-++.+|..+-+ +...-..-...|++.|.....+.. ...+|.+.|..
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP--~~~pvtmvD~RP~a-----e~m~~w~t~T~y~~~DYl~~~~~~---~~~~D~vtail 891 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIP--PDTPVTMVDTRPFA-----EPMNCWNTQTQYIQADYLSDAWWN---GTPFDAVTAIL 891 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS---TTSEEEEEESS--S-----SSCCCCSTTEEEEES-TTSCCGGC---C---SEEEECT
T ss_pred CcceEEEccCCccceeeeccC--CCCceEEEecCCcc-----cccchhhhcceeeeeccccceeEe---cCCCCEEEEEe
Confidence 468999999887443333332 45689999987753 222222256889999998865433 34789999966
Q ss_pred hhcCCC---cchHHHHHHHHHHhccCCe
Q psy1107 159 VLSAIH---PNKFSTVVKNLFIMLKSGG 183 (218)
Q Consensus 159 ~l~~~~---~~~~~~~l~~~~~~Lk~gG 183 (218)
.|...- --.....++.+.+.++..|
T Consensus 892 SLGAAaA~a~~tl~~~l~~~l~~~~~~~ 919 (1289)
T PF06016_consen 892 SLGAAAASANVTLDAGLQQFLSQCVQAN 919 (1289)
T ss_dssp CHHHHHHHCT--HHHHHHHHHHHHHCTT
T ss_pred eehhhhhcCCCcHHHHHHHHHHHHHhCC
Confidence 554321 1246778888888877766
No 413
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.57 E-value=34 Score=26.88 Aligned_cols=79 Identities=10% Similarity=0.050 Sum_probs=41.1
Q ss_pred CCcEEEEecCCC-chhHHHHh----hcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--C
Q psy1107 79 GEGVLLEVGCGV-GNFIFPLL----SWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~-G~~~~~~~----~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~ 147 (218)
.++.+|=.|+++ +..+..++ +.+ .+++.++.+....+.+.......+.. .++.+|+.+.+-.. .. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG--AELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 356788888752 34444443 434 57888887743222222211111223 56788988753211 01 1
Q ss_pred CCcccEEEechhh
Q psy1107 148 HNSVDIATLIFVL 160 (218)
Q Consensus 148 ~~~~D~i~~~~~l 160 (218)
-+++|+++.+..+
T Consensus 81 ~g~iDilVnnAG~ 93 (274)
T PRK08415 81 LGKIDFIVHSVAF 93 (274)
T ss_pred cCCCCEEEECCcc
Confidence 2578988876543
No 414
>KOG2782|consensus
Probab=70.30 E-value=5.1 Score=30.58 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=43.2
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCC
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~ 123 (218)
..+.++...+|.-.|.|..+..+.+..+..++++.|-+|.+-..|....
T Consensus 39 lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 39 LSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred cCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 4556788999999999999999999999999999999999988887664
No 415
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.24 E-value=39 Score=27.93 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-ccC----CCcccccCCCCCc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDV----TEDDILNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~d~----~~~~~~~~~~~~~ 150 (218)
..++.+||=.|+| .|..+..+++......+++++.++...+.++..-. . .++. .+. ....+........
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~---~--~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA---D--YVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---C--EEEcccccccccHHHHHHHhcCCCC
Confidence 4456677766765 44455555554322278999988887777665411 1 1111 100 0000111122345
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+|+.. .. .....+..+.+.|+++|.++...
T Consensus 276 vDvvld~-----~g--~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 276 ADIQVEA-----AG--APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCEEEEC-----CC--CcHHHHHHHHHHHHcCCEEEEEC
Confidence 8988853 21 22345677788899999998754
No 416
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.21 E-value=55 Score=26.64 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCc-----ccccCCCCCcc
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED-----DILNQVPHNSV 151 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~~~ 151 (218)
++.+||=.|+| .|..+..+++.. .. ++++++.++...+.++..-. . .++..+-... .+........+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~---~--~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGA---D--ATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC---C--eEEcCcccccHHHHHHHHHHhCCCCC
Confidence 56677777764 455555666553 35 88999988887777754311 1 1111110000 01111222368
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+++.. .. ....+....+.|+++|.++...
T Consensus 251 d~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEA-----SG---HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEEC-----CC---ChHHHHHHHHHhccCCEEEEEc
Confidence 988842 11 1235667788999999998754
No 417
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.85 E-value=9.4 Score=30.27 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=40.7
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
....++..|||.-+|+|..+......+ ...+++|+++.-++.+..+..
T Consensus 218 ~~s~~~diVlDpf~GsGtt~~aa~~~~--r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 218 DYSFPGDIVLDPFAGSGTTGIAAKNLG--RRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred hcCCCCCEEeecCCCCChHHHHHHHcC--CceEEEecCHHHHHHHHHHHH
Confidence 345678999999999999998877665 589999999999999988754
No 418
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.17 E-value=24 Score=28.69 Aligned_cols=104 Identities=16% Similarity=0.063 Sum_probs=61.9
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.+||=.|+ |.|..++++++..-. .++++-.+++..+.++..-.. .-+.+...|+.+. .........+|+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd--~vi~y~~~~~~~~-v~~~t~g~gvDv 214 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD--HVINYREEDFVEQ-VRELTGGKGVDV 214 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC--EEEcCCcccHHHH-HHHHcCCCCceE
Confidence 3456888988885 577889999887532 666666677766677665221 1122222222221 111122236999
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
|+.. . -...+......|+++|.++......
T Consensus 215 v~D~-----v----G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 215 VLDT-----V----GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EEEC-----C----CHHHHHHHHHHhccCCEEEEEecCC
Confidence 9852 2 2346666788999999988866443
No 419
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=68.77 E-value=34 Score=27.52 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred cCCCcEEEEecCCC-chhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEecc-CCCcccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCGV-GNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCD-VTEDDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~~D~ 153 (218)
..++.+||-.|+|. |..+..+++.. ... +++++.++...+.+...-. ..++... .....+....+...+|+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-----DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-----CEEecCccccHHHHHHHhCCCCCCE
Confidence 45667888888754 66666666653 244 8888888877777654311 1111110 00111111122235898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
++.. .. ....+..+.+.|+++|.++...
T Consensus 231 vld~-----~g---~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEA-----AG---SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEC-----CC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 8842 21 1235677788999999988754
No 420
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=68.75 E-value=32 Score=28.18 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=56.9
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc---ccCCCCCcc
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI---LNQVPHNSV 151 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~~~ 151 (218)
...++.+||=.|+| .|..+..+++.....++++++.++...+.++..-. ..++...-....+ ......+.+
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga-----~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV-----TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----ceEEcccccchhHHHHHHHHhCCCC
Confidence 34567888888875 45556666655322279999999998888865411 1111110000000 001112258
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
|+++-. .. ....+..+.+.++++ |.+++...
T Consensus 259 d~vid~-----~G---~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 259 DYSFEC-----TG---NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CEEEEC-----CC---ChHHHHHHHHHhhcCCCEEEEECc
Confidence 888742 21 124566677888996 98887654
No 421
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.75 E-value=41 Score=27.55 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=56.0
Q ss_pred hcCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEec-cCC---CcccccCCCCC
Q psy1107 76 QDVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPC-DVT---EDDILNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~-d~~---~~~~~~~~~~~ 149 (218)
...++.+||=.|+| .|..+..+++.. .. ++++++.++...+.++..-. . .++.. +.. ...+..... .
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~~ga---~--~~i~~~~~~~~~~~~~~~~~~-~ 253 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKEFGA---T--DFINPKDSDKPVSEVIREMTG-G 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCC---C--cEeccccccchHHHHHHHHhC-C
Confidence 34567788888875 455555666553 24 79999999988888865411 1 11111 000 000101112 3
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEec
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRDY 190 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~~ 190 (218)
.+|+|+-. .. -...+..+.+.++++ |.++....
T Consensus 254 g~d~vid~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFEC-----TG---NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEEC-----CC---ChHHHHHHHHhcccCCCEEEEEcC
Confidence 68988842 21 124567778888875 88877553
No 422
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.70 E-value=52 Score=25.44 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=55.8
Q ss_pred hcCCCcEEEEecCCC-chhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccE
Q psy1107 76 QDVGEGVLLEVGCGV-GNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDI 153 (218)
Q Consensus 76 ~~~~~~~vLDiGcG~-G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~ 153 (218)
...++.++|-.|+|. |..+..+++... .+ +++++.++...+.++..-. ...+ ... .. .......+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~--~~~~--~~~--~~----~~~~~~~~d~ 162 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGP--ADPV--AAD--TA----DEIGGRGADV 162 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCC--Cccc--ccc--ch----hhhcCCCCCE
Confidence 345677888788763 666666666532 35 9999988888887765410 0011 000 00 0112336898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.. .. ....+....+.|+++|.++...
T Consensus 163 vl~~-----~~---~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEA-----SG---SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEc-----cC---ChHHHHHHHHHhcCCcEEEEEe
Confidence 8742 11 1235677788899999888654
No 423
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.50 E-value=10 Score=29.53 Aligned_cols=77 Identities=9% Similarity=-0.031 Sum_probs=42.1
Q ss_pred EEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcccE
Q psy1107 82 VLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSVDI 153 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~D~ 153 (218)
++|-.|+. |..+..++.. ....+|+.++.+....+.+.......+.++.++.+|+.+..-... + ..+.+|+
T Consensus 2 ~vlVtGas-ggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGAA-SGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46666654 4444344332 122588888887766554433322234567888999877432111 0 1136888
Q ss_pred EEechh
Q psy1107 154 ATLIFV 159 (218)
Q Consensus 154 i~~~~~ 159 (218)
++....
T Consensus 81 lI~~ag 86 (270)
T PRK05650 81 IVNNAG 86 (270)
T ss_pred EEECCC
Confidence 887654
No 424
>PRK12937 short chain dehydrogenase; Provisional
Probab=67.34 E-value=42 Score=25.33 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCchhHHHHh----hcCCccEEEEEeCC-HHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----
Q psy1107 79 GEGVLLEVGCGVGNFIFPLL----SWSKICYIHACDIS-PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP----- 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~----~~~~~~~v~~~D~s-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~----- 147 (218)
++.++|=.|++ |..+..++ +.+ .+++.+.-+ +...+.........+.++.++.+|+.+..-... +.
T Consensus 4 ~~~~vlItG~~-~~iG~~la~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 4 SNKVAIVTGAS-RGIGAAIARRLAADG--FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC--CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45677777774 33433333 334 356555432 222222211112223568888899877431111 10
Q ss_pred CCcccEEEechhhcC------CCcchHH-----------HHHHHHHHhccCCeEEEEEe
Q psy1107 148 HNSVDIATLIFVLSA------IHPNKFS-----------TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~------~~~~~~~-----------~~l~~~~~~Lk~gG~li~~~ 189 (218)
-+..|+++....... .+.+++. .++..+.+.++++|.+++..
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 135788887553221 1112221 23444555666777777654
No 425
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=67.12 E-value=7.2 Score=31.28 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 167 KFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 167 ~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
.....+..+..+|+|||.+++.+|..-..-
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDr 243 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDR 243 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 456888889999999999999997765543
No 426
>PRK06182 short chain dehydrogenase; Validated
Probab=67.10 E-value=54 Score=25.45 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=42.8
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~ 151 (218)
..++|=.|++ |..+..+++.. ...+|++++-++..++.... ..+.++.+|+.+..-... + ..+..
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS------LGVHPLSLDVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4577777754 44444454331 23588888887766544332 247788899887532111 1 11367
Q ss_pred cEEEechhh
Q psy1107 152 DIATLIFVL 160 (218)
Q Consensus 152 D~i~~~~~l 160 (218)
|+++.....
T Consensus 76 d~li~~ag~ 84 (273)
T PRK06182 76 DVLVNNAGY 84 (273)
T ss_pred CEEEECCCc
Confidence 988886543
No 427
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.07 E-value=39 Score=26.34 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=41.5
Q ss_pred CCcEEEEecCCCc-hh----HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--C
Q psy1107 79 GEGVLLEVGCGVG-NF----IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G-~~----~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~ 147 (218)
+++++|=.|++.| .. +..+++.+ .+++.++-+....+.+...... .....++.+|+.+.+-.. .. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G--~~vil~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRVEEFAAQ-LGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC--CEEEEEecchhHHHHHHHHHhc-cCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 3567888888652 43 44444444 4777777653222222222111 134567789988753211 00 1
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
-+++|+++.+..
T Consensus 82 ~g~iD~linnAg 93 (262)
T PRK07984 82 WPKFDGFVHSIG 93 (262)
T ss_pred cCCCCEEEECCc
Confidence 146899888664
No 428
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=67.00 E-value=45 Score=27.37 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHH-HHHHhCCcccCCCceEEeccCCCc-ccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAV-NFFKLNPLYDASKMNVFPCDVTED-DILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~-~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~~D~i 154 (218)
.++.+||-.|+| .|..+.++++.. ..++++++.+.... +.+++. +. ..++ +..+. .+ .... +.+|+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~----Ga-~~vi--~~~~~~~~-~~~~-~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL----GA-DSFL--VSTDPEKM-KAAI-GTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC----CC-cEEE--cCCCHHHH-Hhhc-CCCCEE
Confidence 456788878886 566666666653 35788887766543 233322 11 1111 11110 11 1111 247888
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+-. .. -...+..+.+.|+++|.++....
T Consensus 252 id~-----~g---~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 252 IDT-----VS---AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEC-----CC---CHHHHHHHHHHhcCCcEEEEeCC
Confidence 742 21 12356778889999999887653
No 429
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.25 E-value=21 Score=27.40 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++-+...++.........+.++.++.+|+.+..-...+ .-+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4568888887654 2333344444 4888888887766555443333335677888998875321110 014
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
+.|+++.+..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6898887543
No 430
>PRK10537 voltage-gated potassium channel; Provisional
Probab=66.14 E-value=36 Score=28.61 Aligned_cols=99 Identities=6% Similarity=-0.059 Sum_probs=53.9
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
..++=+|+ |..+..+++.. .+..++.+|.+.. +... ..+..++.+|..+.+......-.+.+.+++..
T Consensus 241 ~HvII~G~--g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~------~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 241 DHFIICGH--SPLAINTYLGLRQRGQAVTVIVPLGL--EHRL------PDDADLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CeEEEECC--ChHHHHHHHHHHHCCCCEEEEECchh--hhhc------cCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 45555555 45555554431 1247888886521 1111 13467889999886554433334567776521
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
+.+......-...+.+.|+..++........
T Consensus 311 -----~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~ 341 (393)
T PRK10537 311 -----DNDADNAFVVLAAKEMSSDVKTVAAVNDSKN 341 (393)
T ss_pred -----CChHHHHHHHHHHHHhCCCCcEEEEECCHHH
Confidence 2223333444556777898888886644333
No 431
>KOG1269|consensus
Probab=66.13 E-value=29 Score=28.85 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=67.4
Q ss_pred CCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc---cCCCceEEeccCCCcccc-----------
Q psy1107 78 VGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY---DASKMNVFPCDVTEDDIL----------- 143 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~----------- 143 (218)
.....++|.+|+.+.....+++..+..+--|+++..+.+..+...... ......+..+|.......
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhc
Confidence 346799999999999988888876656667788888888877766433 112344444443321100
Q ss_pred --------------cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 144 --------------NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 144 --------------~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
..++-..+|. .....|+ .+...++......++++|.+++.++.+..
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~--~~~~~~f~~~~~~~~~~~~v~~~e~~~~~ 318 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLT---RDTITHW--QDKSALFRGRVATLKPGGKVLILEYIRGL 318 (364)
T ss_pred cchhhhhcccccCCCccccccccc---hhheeec--ccccHHHHhHhhccCcCceEEehhhcCcC
Confidence 0001111222 1222233 23445677888999999999998765444
No 432
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=65.98 E-value=41 Score=27.07 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=55.3
Q ss_pred cEEEEecC--CCchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccc---cCCCCCcccEE
Q psy1107 81 GVLLEVGC--GVGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL---NQVPHNSVDIA 154 (218)
Q Consensus 81 ~~vLDiGc--G~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~~~~D~i 154 (218)
.+||=.|+ |.|..+.++++.. .+ ++++++.++...+.+...... . .++.. .+.++. .......+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa--~--~vi~~--~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGF--D--AAINY--KTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCC--c--EEEEC--CCCCHHHHHHHHCCCCceEE
Confidence 68887775 5778888887764 34 799999888887777653211 1 11111 111110 11112468988
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.. .. . ..+..+.+.|+++|.++...
T Consensus 229 id~-----~g--~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDN-----VG--G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEC-----CC--c--HHHHHHHHHhccCCEEEEEe
Confidence 842 21 1 13467788999999988754
No 433
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=65.94 E-value=18 Score=30.11 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc-cccCCCCCcccEEEe
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD-ILNQVPHNSVDIATL 156 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~~D~i~~ 156 (218)
++.+|+=+|+| .|..+...+... .++|+++|.++...+.+..... ..+. .+..+.. +...+ ..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g---~~v~---~~~~~~~~l~~~l--~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG---GRIH---TRYSNAYEIEDAV--KRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC---ceeE---eccCCHHHHHHHH--ccCCEEEE
Confidence 45679999987 555555555443 2589999999887766654321 1111 1111110 10111 25799986
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
...+...+ .+.-+-..+.+.++|++.++-....
T Consensus 237 a~~~~g~~--~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 237 AVLIPGAK--APKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred ccccCCCC--CCcCcCHHHHhcCCCCCEEEEEecC
Confidence 43221110 1111235556778999877654433
No 434
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=65.88 E-value=54 Score=27.16 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=53.0
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHH-HHHHHhCCcccCCCceEEeccCCC-cccccCCCCCcccEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRA-VNFFKLNPLYDASKMNVFPCDVTE-DDILNQVPHNSVDIA 154 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~-~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~~D~i 154 (218)
.++.+||-.|+| .|..+.++++.. .+++++++.+... .+.++.. +. .+++ +..+ ..+.... +.+|++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l----Ga-~~~i--~~~~~~~v~~~~--~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL----GA-DSFL--VTTDSQKMKEAV--GTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC----CC-cEEE--cCcCHHHHHHhh--CCCcEE
Confidence 357788888885 556666666653 3578888876543 4555432 11 1111 1111 0111111 247888
Q ss_pred EechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 155 TLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+-. .. ....+..+.+.++++|.++....
T Consensus 247 id~-----~G---~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDT-----VS---AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEC-----CC---cHHHHHHHHHhhcCCCEEEEEcc
Confidence 742 21 12356778889999999987654
No 435
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=65.71 E-value=36 Score=27.61 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=56.0
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccc----ccCCCCCc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI----LNQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~~~ 150 (218)
..++.+||=.|+| .|..+.++++.. .. .+++++.++...+.+...- .. .++ |..+.++ ........
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~g----a~-~~i--~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELG----AT-IVL--DPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhC----CC-EEE--CCCccCHHHHHHHHhCCCC
Confidence 4456777777764 455556666553 34 7888998888888876531 11 111 1111111 01122234
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
+|+++-. .. ....+..+.+.|+++|.++....
T Consensus 242 ~d~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDC-----AG---VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEEC-----CC---CHHHHHHHHHhccCCCEEEEEcc
Confidence 8988842 11 12356777889999999887654
No 436
>PRK06484 short chain dehydrogenase; Validated
Probab=65.58 E-value=47 Score=28.68 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++-++..++...... +.+...+.+|+.+.+-... + .-+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG--DRLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567777776554 2233344444 58999998877666554432 2356677889887532111 1 114
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
.+|+++.+..
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 6898887553
No 437
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.50 E-value=31 Score=26.67 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=42.1
Q ss_pred CCcEEEEecCCC-chhHHHHhhcC--CccEEEEEeCC---HHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--
Q psy1107 79 GEGVLLEVGCGV-GNFIFPLLSWS--KICYIHACDIS---PRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV-- 146 (218)
Q Consensus 79 ~~~~vLDiGcG~-G~~~~~~~~~~--~~~~v~~~D~s---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-- 146 (218)
.++++|-.|+++ +..+..+++.. ...+++.++.+ ...++....... +.++.++.+|+.+.+-.. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 356888888763 44554444331 22477776543 233333332221 246778889998763211 11
Q ss_pred CCCcccEEEech
Q psy1107 147 PHNSVDIATLIF 158 (218)
Q Consensus 147 ~~~~~D~i~~~~ 158 (218)
.-+++|+++.+.
T Consensus 84 ~~g~ld~lv~na 95 (257)
T PRK08594 84 EVGVIHGVAHCI 95 (257)
T ss_pred hCCCccEEEECc
Confidence 115789887654
No 438
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=65.39 E-value=21 Score=33.92 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccE-------------EEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICY-------------IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN 144 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~-------------v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 144 (218)
+..+|+=+||| .|......+...+..+ ++..|.+....+.+.+.. .++..+..|+.+..-..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----CCCceEEeecCCHHHHH
Confidence 46799999998 4555444444444444 888999887766554432 24556667765532222
Q ss_pred CCCCCcccEEEe
Q psy1107 145 QVPHNSVDIATL 156 (218)
Q Consensus 145 ~~~~~~~D~i~~ 156 (218)
..-. ..|+|+.
T Consensus 644 ~~v~-~~DaVIs 654 (1042)
T PLN02819 644 KYVS-QVDVVIS 654 (1042)
T ss_pred Hhhc-CCCEEEE
Confidence 2112 3788876
No 439
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.33 E-value=23 Score=27.17 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=42.8
Q ss_pred cEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCCcc
Q psy1107 81 GVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHNSV 151 (218)
Q Consensus 81 ~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~~~ 151 (218)
+++|-.|++.| ..+..+++.+ .++++++-+....+.+.......+.++.++.+|+.+...... . .-+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG--ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46777777554 2233333434 488888887765554443322223568888999877532111 0 01357
Q ss_pred cEEEech
Q psy1107 152 DIATLIF 158 (218)
Q Consensus 152 D~i~~~~ 158 (218)
|+++...
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888654
No 440
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.13 E-value=34 Score=27.56 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=59.5
Q ss_pred hcCCCcEEEEecC--CCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-c---cCCCcccccCCCCC
Q psy1107 76 QDVGEGVLLEVGC--GVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-C---DVTEDDILNQVPHN 149 (218)
Q Consensus 76 ~~~~~~~vLDiGc--G~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~---d~~~~~~~~~~~~~ 149 (218)
...++.+||=.|+ |.|..+.++++.. ..++++++.++...+.++..... . +++. . ++.. .+..... .
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa--~--~vi~~~~~~~~~~-~i~~~~~-~ 220 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF--D--DAFNYKEEPDLDA-ALKRYFP-N 220 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC--c--eeEEcCCcccHHH-HHHHhCC-C
Confidence 3456788888886 4777777787663 35888888888888888762211 1 1111 0 1110 0101112 4
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.+|+|+.. .. ...+..+.+.|+++|.++...
T Consensus 221 gvd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDN-----VG----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEEC-----CC----HHHHHHHHHHhccCcEEEEec
Confidence 68988742 21 145677889999999988754
No 441
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.80 E-value=25 Score=26.94 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=45.9
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~~ 150 (218)
++.++|=.|++ |..+..++... ...+++.++-++..++.........+.++.++.+|+.+..-.. .. .-++
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 46688877764 44444443321 2358999998876655444333333456888899988753211 00 1136
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
+|.++....
T Consensus 89 id~vi~~ag 97 (256)
T PRK06124 89 LDILVNNVG 97 (256)
T ss_pred CCEEEECCC
Confidence 788887543
No 442
>PRK07890 short chain dehydrogenase; Provisional
Probab=64.72 E-value=25 Score=26.92 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCchhHHH----HhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CC
Q psy1107 79 GEGVLLEVGCGVGNFIFP----LLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~----~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~ 148 (218)
++.++|=.|++. .++.. ++..+ .+|++++-++...+.+.......+.++.++.+|+.+...... + .-
T Consensus 4 ~~k~vlItGa~~-~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGP-GLGRTLAVRAARAG--ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 356788776644 34433 44444 589999988766555443332223567889999887532110 0 01
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++....
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 36788887653
No 443
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=64.31 E-value=54 Score=25.19 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=41.9
Q ss_pred cCCCcEEEEecCCCchh--HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEE
Q psy1107 77 DVGEGVLLEVGCGVGNF--IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIA 154 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~--~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i 154 (218)
..++.+||=+|+|.-.. +..++..+....|++-+++++....+.. .++.++..++...++ ..+++|
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~------~~i~~~~r~~~~~dl------~g~~LV 89 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY------GNLKLIKGNYDKEFI------KDKHLI 89 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC------CCEEEEeCCCChHHh------CCCcEE
Confidence 34678999999997543 2334444544456666888877665542 357777665544222 146777
Q ss_pred Eec
Q psy1107 155 TLI 157 (218)
Q Consensus 155 ~~~ 157 (218)
++.
T Consensus 90 iaA 92 (223)
T PRK05562 90 VIA 92 (223)
T ss_pred EEC
Confidence 763
No 444
>KOG1252|consensus
Probab=64.27 E-value=11 Score=30.69 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHhhhcCCCcEEEEecCCCc----hhHHHHhhcCCccEEEEEeCCHHH
Q psy1107 71 HEFVNQDVGEGVLLEVGCGVG----NFIFPLLSWSKICYIHACDISPRA 115 (218)
Q Consensus 71 ~~~~~~~~~~~~vLDiGcG~G----~~~~~~~~~~~~~~v~~~D~s~~~ 115 (218)
+++..+......++-.|.|+| ..++.+.+++|+.+|+++|.....
T Consensus 203 ~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~ 251 (362)
T KOG1252|consen 203 PEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI 251 (362)
T ss_pred HHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce
Confidence 344444456667888888988 457788888999999999986654
No 445
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=64.09 E-value=38 Score=23.62 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=33.2
Q ss_pred CCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchhhh
Q psy1107 148 HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQM 198 (218)
Q Consensus 148 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~~~ 198 (218)
...+|+|+..- ........+..+...+.++..+++...+......+
T Consensus 65 ~~~~D~viv~v-----Ka~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l 110 (151)
T PF02558_consen 65 AGPYDLVIVAV-----KAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVL 110 (151)
T ss_dssp HSTESEEEE-S-----SGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHH
T ss_pred cCCCcEEEEEe-----cccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHH
Confidence 35799998742 22256678899999999999999888776655443
No 446
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=64.03 E-value=13 Score=29.76 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=42.5
Q ss_pred cCCCchhHHHHhh----cCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceE----EeccCCCcccc-cCCCCCcccEEE
Q psy1107 87 GCGVGNFIFPLLS----WSKICYIHACDISPRAVNFFKLNPLY--DASKMNV----FPCDVTEDDIL-NQVPHNSVDIAT 155 (218)
Q Consensus 87 GcG~G~~~~~~~~----~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~----~~~d~~~~~~~-~~~~~~~~D~i~ 155 (218)
-.|.|..+..+++ .+| .+++.+|.++..+-..+..... ...++.+ +.+|+.+.... ..+.....|+|+
T Consensus 4 TGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 3456666666554 356 4899999999888877776532 1234544 47888876432 235555789999
Q ss_pred echhhcCCC
Q psy1107 156 LIFVLSAIH 164 (218)
Q Consensus 156 ~~~~l~~~~ 164 (218)
-...+-|+|
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 888877775
No 447
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=64.01 E-value=50 Score=26.61 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCcc-EEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKIC-YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~-~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.++.+||-.|+| .|..+..+++.. .. .+++++-++.....+...-. ..-+.....++. .+....+...+|+++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~--~~~~~~~~~~vd~vl 236 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGA--DVVINPREEDVV--EVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCc--ceeeCcccccHH--HHHHHcCCCCCCEEE
Confidence 456677666765 356666666654 24 68888777777776664311 000000001110 011112234689888
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .. ....+..+.+.|+++|.++...
T Consensus 237 d~-----~g---~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 237 EM-----SG---NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EC-----CC---CHHHHHHHHHHhccCCEEEEEc
Confidence 42 11 1235667778899999988754
No 448
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.91 E-value=38 Score=25.99 Aligned_cols=80 Identities=15% Similarity=-0.012 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCC----HHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDIS----PRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V----- 146 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s----~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~----- 146 (218)
.+.++|=.|++. ..+..+++.. ...+++.++.+ ....+.........+.++.++.+|+.+..-... +
T Consensus 7 ~~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 7 KGKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 346788777644 4444444331 12355555432 222222211111123467888999887532111 0
Q ss_pred CCCcccEEEechh
Q psy1107 147 PHNSVDIATLIFV 159 (218)
Q Consensus 147 ~~~~~D~i~~~~~ 159 (218)
..+..|+++....
T Consensus 86 ~~~~id~li~~ag 98 (257)
T PRK12744 86 AFGRPDIAINTVG 98 (257)
T ss_pred hhCCCCEEEECCc
Confidence 1136788887654
No 449
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.80 E-value=7.7 Score=28.98 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=49.4
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
...+..+|-+|.= +|.....++.. ..+|+.+|+.+.+..... .++.|... ..++.+.+|+|+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp-------~~v~Fr~~--------~~~~~G~~Dliv 104 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP-------NNVKFRNL--------LKFIRGEVDLIV 104 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC-------CCccHhhh--------cCCCCCceeEEE
Confidence 3467789999885 78777777654 359999999997754443 23444322 345567899999
Q ss_pred echhhcCCCc
Q psy1107 156 LIFVLSAIHP 165 (218)
Q Consensus 156 ~~~~l~~~~~ 165 (218)
-.-.+....|
T Consensus 105 DlTGlGG~~P 114 (254)
T COG4017 105 DLTGLGGIEP 114 (254)
T ss_pred eccccCCCCH
Confidence 8777776654
No 450
>KOG2666|consensus
Probab=63.67 E-value=9.4 Score=30.92 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=29.4
Q ss_pred cEEEEecCC--CchhHHHHhhcCCccEEEEEeCCHHHHHH
Q psy1107 81 GVLLEVGCG--VGNFIFPLLSWSKICYIHACDISPRAVNF 118 (218)
Q Consensus 81 ~~vLDiGcG--~G~~~~~~~~~~~~~~v~~~D~s~~~~~~ 118 (218)
.+|+-+|.| -|..+..++..+|...|+.+|+|...+..
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~ 41 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINA 41 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhc
Confidence 478899999 35556666777999999999999876544
No 451
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.26 E-value=27 Score=26.67 Aligned_cols=79 Identities=16% Similarity=0.057 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~ 149 (218)
.+.++|-.|++.| ..+..+++.+ .+++.++-++..++.........+.++.++.+|+.+..-... + ..+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG--AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567888886543 2233333334 589999888766544433323234568888999987531111 0 113
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
++|+++....
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6798887654
No 452
>PRK06500 short chain dehydrogenase; Provisional
Probab=63.19 E-value=63 Score=24.42 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=40.5
Q ss_pred CcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 80 EGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
+.++|=.|++ |..+..+ ++.+ .++++++-+...+....+.. +.++.++.+|+.+..-... . ..+
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEG--ARVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4566766664 3444333 3334 47888887766554443322 3467778888876421100 0 113
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
++|+++....
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6788876543
No 453
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.71 E-value=27 Score=27.01 Aligned_cols=80 Identities=19% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~ 149 (218)
++.++|-.|++.| ..+..++..+ .+++.++-++..++.+.......+.++.++.+|+.+..-... + .-+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4567888887654 2344444444 578888888766655544433334568889999987532110 0 114
Q ss_pred cccEEEechhh
Q psy1107 150 SVDIATLIFVL 160 (218)
Q Consensus 150 ~~D~i~~~~~l 160 (218)
++|+++.....
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 454
>PRK07063 short chain dehydrogenase; Provisional
Probab=62.71 E-value=28 Score=26.74 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc--cCCCceEEeccCCCcccccC-C-----C
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY--DASKMNVFPCDVTEDDILNQ-V-----P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~-~-----~ 147 (218)
.++++|-.|++.| ..+..+++.+ .+++.++-++...+........ .+.++.++.+|+.+..-... + .
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG--AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888887544 2233334434 5888888877766555443322 23568888999987532111 1 0
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
-+..|+++....
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 146888887553
No 455
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.69 E-value=47 Score=25.96 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHH
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAV 116 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~ 116 (218)
+...|+-+|+| .|.|+...+.+.--.+++.+|.+.-.+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 46789999985 899988876653234888888655433
No 456
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.56 E-value=51 Score=25.74 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=40.8
Q ss_pred CCcEEEEecCCC--c---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--C
Q psy1107 79 GEGVLLEVGCGV--G---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~--G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~ 147 (218)
+++.+|-.|++. | ..+..+++.+ .+|+.++-+....+.........+ ...++.+|+.+.+-.. .. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQG--AELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCC--CEEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 356788888765 3 3344444444 578777765432222222111112 2346788988753111 00 1
Q ss_pred CCcccEEEechhh
Q psy1107 148 HNSVDIATLIFVL 160 (218)
Q Consensus 148 ~~~~D~i~~~~~l 160 (218)
-+..|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 1478988876543
No 457
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=62.45 E-value=16 Score=26.61 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=38.1
Q ss_pred hhcCCCcEEEEecCCCchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCc
Q psy1107 75 NQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~ 124 (218)
.+...+.+-+|+|+..|.++--.++.....+++++++-.++-...+-+..
T Consensus 75 nhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvq 124 (286)
T PF05575_consen 75 NHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQ 124 (286)
T ss_pred hhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeee
Confidence 56677789999999999998766666556699999987777665555433
No 458
>KOG0022|consensus
Probab=62.33 E-value=19 Score=29.21 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=52.1
Q ss_pred cCCCcEEEEecCCCchh-HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe-ccCCCc--ccccCCCCCccc
Q psy1107 77 DVGEGVLLEVGCGVGNF-IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTED--DILNQVPHNSVD 152 (218)
Q Consensus 77 ~~~~~~vLDiGcG~G~~-~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~-~d~~~~--~~~~~~~~~~~D 152 (218)
..++.++.-+|+|.=.+ ..+-++..-..+++|+|+++...+.|+..-. ..++. .|..+. .....+-++.+|
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa-----Te~iNp~d~~~~i~evi~EmTdgGvD 264 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA-----TEFINPKDLKKPIQEVIIEMTDGGVD 264 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc-----ceecChhhccccHHHHHHHHhcCCce
Confidence 34556666666664333 2233333223599999999999999987621 11111 011110 001112234566
Q ss_pred EEEechhhcCCCcchHHHHHHHHHHhccCC-eEEEEEe
Q psy1107 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSG-GIILFRD 189 (218)
Q Consensus 153 ~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~ 189 (218)
.-+ +.. .-..++.++....+.| |.-++..
T Consensus 265 ysf-----Ec~---G~~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 265 YSF-----ECI---GNVSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred EEE-----Eec---CCHHHHHHHHHHhhcCCCeEEEEE
Confidence 554 222 1235667777777777 7666543
No 459
>PRK09072 short chain dehydrogenase; Provisional
Probab=62.05 E-value=37 Score=26.15 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-----CCCc
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-----PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-----~~~~ 150 (218)
++.++|=.|++.| ..+..+++.+ .+|++++.++..++...... ..+.++.++.+|+.+..-...+ ..+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG--ARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 3457777776543 2333444444 58999998887665554433 2235788889998875321110 0246
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
.|.++....
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 788887654
No 460
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=61.94 E-value=7.6 Score=31.35 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhccCCeEEEEEecCCCc
Q psy1107 167 KFSTVVKNLFIMLKSGGIILFRDYGLHD 194 (218)
Q Consensus 167 ~~~~~l~~~~~~Lk~gG~li~~~~~~~~ 194 (218)
.....+..+..+|+|||.+++.+|..-.
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLE 246 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLE 246 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchh
Confidence 4568888999999999999999976544
No 461
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.91 E-value=39 Score=27.72 Aligned_cols=99 Identities=17% Similarity=0.095 Sum_probs=56.1
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCC--cccccCCCCCcccE
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE--DDILNQVPHNSVDI 153 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~~D~ 153 (218)
..++.+||-.|+| .|..+..+++......+++++.++...+.++..-. ..++..+-.. ..+.... ...+|+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-----~~~i~~~~~~~~~~v~~~~-~~~~d~ 257 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-----THVINPKEEDLVAAIREIT-GGGVDY 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-----cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence 3456778777775 46666666665322269999999988887765311 1111111000 0011111 336898
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
|+.. .. -...+..+.+.|+++|.++...
T Consensus 258 vld~-----~g---~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDT-----TG---VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEEC-----CC---CcHHHHHHHHHhccCCEEEEeC
Confidence 8842 11 0135677888899999888754
No 462
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.78 E-value=31 Score=26.20 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CCC--CCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QVP--HNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~--~~~ 150 (218)
++.++|-.|++ |..+..++... ...+++.++.++..++.+.......+.++.++.+|+.+..-.. ... .+.
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 35678877763 33343443321 1248899998876655544433333456788899987642111 010 135
Q ss_pred ccEEEech
Q psy1107 151 VDIATLIF 158 (218)
Q Consensus 151 ~D~i~~~~ 158 (218)
+|.|+...
T Consensus 83 id~vi~~a 90 (253)
T PRK08217 83 LNGLINNA 90 (253)
T ss_pred CCEEEECC
Confidence 78888754
No 463
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.58 E-value=65 Score=24.88 Aligned_cols=78 Identities=13% Similarity=-0.114 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCc-hh----HHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--C
Q psy1107 79 GEGVLLEVGCGVG-NF----IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG~G-~~----~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~ 147 (218)
.++.+|=.|++.| .. +..+++.+ .+|+..+-+....+.+++.....+ ...++.+|+.+.+-.. .. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G--~~v~~~~r~~~~~~~~~~l~~~~g-~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG--AELWFTYQSEVLEKRVKPLAEEIG-CNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC--CEEEEEeCchHHHHHHHHHHHhcC-CceEEEccCCCHHHHHHHHHHHHHH
Confidence 3567788888653 23 33444444 578777765432222222211112 2245678988753211 00 1
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
-+.+|+++.+..
T Consensus 84 ~g~iDilVnnag 95 (260)
T PRK06603 84 WGSFDFLLHGMA 95 (260)
T ss_pred cCCccEEEEccc
Confidence 256898887553
No 464
>PRK07035 short chain dehydrogenase; Provisional
Probab=61.56 E-value=29 Score=26.50 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
++.++|=.|++.| ..+..+++.+ .+|++++.+....+...+.....+.++.++.+|+.+..-... . .-+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQG--AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3467777877655 2233344444 489999988766554444333233467788888876531110 0 013
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
++|+++....
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 5898886553
No 465
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.51 E-value=22 Score=29.12 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=60.6
Q ss_pred hhcCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEec----cCCCcccccCCCCC
Q psy1107 75 NQDVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC----DVTEDDILNQVPHN 149 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~----d~~~~~~~~~~~~~ 149 (218)
....++.++.-+||| -|..+++-+...-..+++++|+++..++.|++.-. .+++.- |+-+ ....+-.+
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-----T~~vn~~~~~~vv~--~i~~~T~g 253 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-----THFVNPKEVDDVVE--AIVELTDG 253 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-----ceeecchhhhhHHH--HHHHhcCC
Confidence 344677788888886 55555555544333599999999999999987622 222221 1111 00112222
Q ss_pred cccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecC
Q psy1107 150 SVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191 (218)
Q Consensus 150 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~ 191 (218)
..|.++- .. .....++.....+.++|..++....
T Consensus 254 G~d~~~e-----~~---G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 254 GADYAFE-----CV---GNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCEEEE-----cc---CCHHHHHHHHHHHhcCCeEEEEecC
Confidence 4555542 22 1224778888888889988886543
No 466
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.80 E-value=75 Score=24.47 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCcEEEEecCC-CchhHHHHhhcC--CccEEEEEeCCH--HHHHHHHhCCcccCCCceEEeccCCCcccccC----C--C
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWS--KICYIHACDISP--RAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--P 147 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~--~~~~v~~~D~s~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~ 147 (218)
.++++|=.|+| ++.++..+++.. ...+|+..+.+. ..++...... +.++.++.+|+.+..-... . .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 35688888884 455554544331 225788877543 3333333222 2356788899887531110 0 1
Q ss_pred CCcccEEEechh
Q psy1107 148 HNSVDIATLIFV 159 (218)
Q Consensus 148 ~~~~D~i~~~~~ 159 (218)
.+.+|+++.+..
T Consensus 83 ~g~iD~li~nAG 94 (256)
T PRK07889 83 VDGLDGVVHSIG 94 (256)
T ss_pred cCCCcEEEEccc
Confidence 257899888654
No 467
>PRK05876 short chain dehydrogenase; Provisional
Probab=60.70 E-value=31 Score=27.02 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=44.7
Q ss_pred CCcEEEEecCCCchhHHHH----hhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC------CC
Q psy1107 79 GEGVLLEVGCGVGNFIFPL----LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV------PH 148 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~----~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------~~ 148 (218)
.+.++|=.|+++| ++..+ +..+ .+++.++.++..++.........+.++.++.+|+.+..-...+ .-
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G--~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRG--ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3457777766544 34344 3334 5788888887665544333222234678889999875321110 11
Q ss_pred CcccEEEechh
Q psy1107 149 NSVDIATLIFV 159 (218)
Q Consensus 149 ~~~D~i~~~~~ 159 (218)
+..|+++.+..
T Consensus 82 g~id~li~nAg 92 (275)
T PRK05876 82 GHVDVVFSNAG 92 (275)
T ss_pred CCCCEEEECCC
Confidence 35798887654
No 468
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.42 E-value=31 Score=26.16 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=47.4
Q ss_pred CCcEEEEecCCCch---hHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C-C-CC
Q psy1107 79 GEGVLLEVGCGVGN---FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V-P-HN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G~---~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~-~-~~ 149 (218)
++.++|=.|++.|. .+..+++.+ .+++.++-++..++.+.+.....+.++..+.+|+.+..-... . . -+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG--ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 35688888888763 444455544 588888888877665544333333456777888776532111 0 1 13
Q ss_pred -cccEEEech
Q psy1107 150 -SVDIATLIF 158 (218)
Q Consensus 150 -~~D~i~~~~ 158 (218)
.+|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 689888865
No 469
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.39 E-value=35 Score=26.12 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=45.3
Q ss_pred CcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCc
Q psy1107 80 EGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~ 150 (218)
+.++|=.|++.| ..+..+++.+ .+++.++-++..++.+.......+.++.++.+|+.+.+-... + .-+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 457777766544 2233344444 488888887776665544333334567888899887531110 0 1136
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
.|+++.+..
T Consensus 84 id~li~~ag 92 (254)
T PRK07478 84 LDIAFNNAG 92 (254)
T ss_pred CCEEEECCC
Confidence 888887654
No 470
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=60.25 E-value=86 Score=24.97 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+||-.|+| .|..+..+++.. ..++++++.+....+.+...- .. .++.. ........ ....+|+++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g----~~-~~~~~--~~~~~~~~-~~~~~d~vi 230 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG----AD-EVVDS--GAELDEQA-AAGGADVIL 230 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC----Cc-EEecc--CCcchHHh-ccCCCCEEE
Confidence 3556788888886 666666666553 358999998888887775431 01 11111 01000001 123588887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
... . ....+..+.+.|+++|.++...
T Consensus 231 ~~~-----~---~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTV-----V---SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECC-----C---cHHHHHHHHHhcccCCEEEEEC
Confidence 421 1 1235677788999999888754
No 471
>PRK07454 short chain dehydrogenase; Provisional
Probab=60.22 E-value=37 Score=25.70 Aligned_cols=79 Identities=9% Similarity=-0.048 Sum_probs=45.1
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~~ 151 (218)
.+++|-.|+ +|..+..++... ...+|++++-++.............+.++.++.+|+.+..-... +. .++.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457777775 455544444331 22489999988766554433322233568888999987532111 10 1357
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+++....
T Consensus 85 d~lv~~ag 92 (241)
T PRK07454 85 DVLINNAG 92 (241)
T ss_pred CEEEECCC
Confidence 88887553
No 472
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=60.19 E-value=53 Score=26.45 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcc----cccCCCCCcccE
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD----ILNQVPHNSVDI 153 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~~~D~ 153 (218)
++.+||-.|+| .|..+..+++......+++++.++...+.+...-. -.++ +..+.. +........+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-----~~~~--~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-----TRAV--NVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----cEEe--cCccccHHHHHHHhcCCCCCCE
Confidence 56677667765 35666666655321267888888877777665311 1111 111111 001122346888
Q ss_pred EEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 154 i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+.. .. ....+..+.+.|+++|.++....
T Consensus 236 v~d~-----~g---~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 236 GLEM-----SG---APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEEC-----CC---CHHHHHHHHHHHhcCCEEEEEec
Confidence 8752 11 12356777889999999888754
No 473
>PRK10867 signal recognition particle protein; Provisional
Probab=59.95 E-value=62 Score=27.62 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=29.6
Q ss_pred CcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCC
Q psy1107 149 NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~ 192 (218)
..||+|+.-..-.....+.....+..+.+.++|...+++.+...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 46899988554322222345566677888889999988887543
No 474
>PRK06484 short chain dehydrogenase; Validated
Probab=59.41 E-value=71 Score=27.60 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=45.0
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
++.++|=.|++.| ..+..+++.+ .+|+.++-+...++.+.... +.++.++.+|+.+..-... . .-+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG--DQVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4567787777665 3333344444 58888888777665544332 2456778899887532110 1 114
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
..|+++.+..
T Consensus 79 ~iD~li~nag 88 (520)
T PRK06484 79 RIDVLVNNAG 88 (520)
T ss_pred CCCEEEECCC
Confidence 6898887653
No 475
>PRK07814 short chain dehydrogenase; Provisional
Probab=59.33 E-value=37 Score=26.24 Aligned_cols=79 Identities=8% Similarity=-0.005 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCchhHHHHhhc--CCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSW--SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~--~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~ 150 (218)
++.++|=.|+ +|..+..+++. ....+|++++-++..++.........+.++.++.+|+.+...... +. -+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567888875 44444444432 123589999988766554443322223567888899887532110 00 136
Q ss_pred ccEEEech
Q psy1107 151 VDIATLIF 158 (218)
Q Consensus 151 ~D~i~~~~ 158 (218)
+|+++...
T Consensus 88 id~vi~~A 95 (263)
T PRK07814 88 LDIVVNNV 95 (263)
T ss_pred CCEEEECC
Confidence 78888754
No 476
>PLN02702 L-idonate 5-dehydrogenase
Probab=59.26 E-value=97 Score=25.26 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEe---ccCCCcccc--cCCCCCc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP---CDVTEDDIL--NQVPHNS 150 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~--~~~~~~~ 150 (218)
..++.+||=.|+| .|..+..+++......+++++.++...+.++..-. ..+.... .++.. .+. .......
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 254 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA---DEIVLVSTNIEDVES-EVEEIQKAMGGG 254 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---CEEEecCcccccHHH-HHHHHhhhcCCC
Confidence 3456677777765 45556666655322258889988888777765311 1111100 01100 000 0011235
Q ss_pred ccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+|+|+.. .. . ...+..+.+.|+++|.++...
T Consensus 255 ~d~vid~-----~g--~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 255 IDVSFDC-----VG--F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCEEEEC-----CC--C-HHHHHHHHHHHhcCCEEEEEc
Confidence 8888742 21 1 235778888999999987654
No 477
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=59.04 E-value=63 Score=26.03 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=53.8
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
..++.+||=.|+| .|..+.++++.....++++++.++.....++..-. ..-+.....++.. .+........+|+++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~--~~~v~~~~~~~~~-~i~~~~~~~~~d~vl 240 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA--THTVNSAKGDAIE-QVLELTDGRGVDVVI 240 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--CceeccccccHHH-HHHHHhCCCCCCEEE
Confidence 3456666666764 44555555555432478889888887777664311 0001111111000 010112233689887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.. .. . ...+..+.+.|+++|.++...
T Consensus 241 d~-----~g--~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 241 EA-----VG--I-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EC-----CC--C-HHHHHHHHHhccCCcEEEEec
Confidence 42 21 1 224677778999999988653
No 478
>PRK07024 short chain dehydrogenase; Provisional
Probab=58.83 E-value=53 Score=25.21 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=44.7
Q ss_pred cEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCCccc
Q psy1107 81 GVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHNSVD 152 (218)
Q Consensus 81 ~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~~~D 152 (218)
.++|=.|+. |.++..++... ...+++.++.++..++.........+ ++.++.+|+.+..-... + ..+..|
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 466666664 44444444321 23589999988877665544333222 78889999987532110 0 113579
Q ss_pred EEEechhh
Q psy1107 153 IATLIFVL 160 (218)
Q Consensus 153 ~i~~~~~l 160 (218)
+++.....
T Consensus 81 ~lv~~ag~ 88 (257)
T PRK07024 81 VVIANAGI 88 (257)
T ss_pred EEEECCCc
Confidence 88886543
No 479
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.43 E-value=90 Score=24.65 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred EEEEecCCCc--hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCccc-CCCceEEeccCCCcccccCCCCCcccEEEech
Q psy1107 82 VLLEVGCGVG--NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158 (218)
Q Consensus 82 ~vLDiGcG~G--~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 158 (218)
+|+=+|+|.- .++..++..+ .+|+.++-++..++..+..-... ..... ........ .... ..+|+|++.-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~--~~~~--~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLEDGEIT-VPVLAADD--PAEL--GPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCcccCCcee-ecccCCCC--hhHc--CCCCEEEEec
Confidence 5778888742 2343444444 47889988777666655431100 01100 00000110 0111 4689888642
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCC
Q psy1107 159 VLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193 (218)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~ 193 (218)
+......++..+...+.++..+++...+..
T Consensus 75 -----k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 75 -----KAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -----ccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 223567788888888888877777665544
No 480
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.59 E-value=38 Score=25.98 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----C--CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----V--PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~--~~~ 149 (218)
.+++||-.|++.| ..+..+++.+ .+++.++-+....+.+.......+.++.++.+|+.+..-... . .-+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G--~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888887655 2233333334 478888877665554433222223467788899887532110 0 113
Q ss_pred cccEEEechh
Q psy1107 150 SVDIATLIFV 159 (218)
Q Consensus 150 ~~D~i~~~~~ 159 (218)
++|.++....
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 6788877543
No 481
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=57.41 E-value=69 Score=26.80 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=56.9
Q ss_pred cCCCcEEEEec-CC-CchhHHHHhhcC-C-ccEEEEEeCCHHHHHHHHhCCccc----CCCceEEeccCCC-ccc----c
Q psy1107 77 DVGEGVLLEVG-CG-VGNFIFPLLSWS-K-ICYIHACDISPRAVNFFKLNPLYD----ASKMNVFPCDVTE-DDI----L 143 (218)
Q Consensus 77 ~~~~~~vLDiG-cG-~G~~~~~~~~~~-~-~~~v~~~D~s~~~~~~~~~~~~~~----~~~i~~~~~d~~~-~~~----~ 143 (218)
..++.+||=+| +| .|..+.++++.. . ..+++++|.++..++.+++..... +....++ +..+ .++ .
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i--~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYV--NPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEE--CCCccccHHHHHH
Confidence 34567888776 34 777777777652 1 137999999999999887742110 1111111 1111 111 0
Q ss_pred cCCCCCcccEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEE
Q psy1107 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188 (218)
Q Consensus 144 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 188 (218)
.......+|+|+... . ....+..+.+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~-----g---~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFV-----P---VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcC-----C---CHHHHHHHHHHhccCCeEEEE
Confidence 111223588887521 1 124667788899988866543
No 482
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.30 E-value=67 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=26.8
Q ss_pred cEEEEecCCCch--hHHHHhhcCCccEEEEEeCCHHHHHHHHhC
Q psy1107 81 GVLLEVGCGVGN--FIFPLLSWSKICYIHACDISPRAVNFFKLN 122 (218)
Q Consensus 81 ~~vLDiGcG~G~--~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~ 122 (218)
.+|.=||+|.-. ++..++..+ ..|+.+|.++..++.++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHH
Confidence 467788888432 233333333 4899999999888877654
No 483
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.20 E-value=79 Score=23.93 Aligned_cols=109 Identities=11% Similarity=-0.030 Sum_probs=51.4
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEe-CCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-CC-----CCc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACD-ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-VP-----HNS 150 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D-~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~-----~~~ 150 (218)
+.++|-.|+ +|..+..++... ...+++... .+..............+.++.++.+|+.+..-... +. -+.
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV 84 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence 467887775 444444444331 123554433 33333222212111223456778888876532110 00 135
Q ss_pred ccEEEechhhcCC------Ccch-----------HHHHHHHHHHhccCCeEEEEEe
Q psy1107 151 VDIATLIFVLSAI------HPNK-----------FSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 151 ~D~i~~~~~l~~~------~~~~-----------~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
.|.|+........ +++. ...+.+.+.+.++++|.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 140 (252)
T PRK06077 85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIA 140 (252)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEc
Confidence 7888876543211 1111 1233445566667777777654
No 484
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=57.17 E-value=1e+02 Score=24.77 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred cEEEEecCC-Cc-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhC--Cccc-CCCceEEeccCCCcccccCCCCCcccEEE
Q psy1107 81 GVLLEVGCG-VG-NFIFPLLSWSKICYIHACDISPRAVNFFKLN--PLYD-ASKMNVFPCDVTEDDILNQVPHNSVDIAT 155 (218)
Q Consensus 81 ~~vLDiGcG-~G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~--~~~~-~~~i~~~~~d~~~~~~~~~~~~~~~D~i~ 155 (218)
.+|+=+|+| .| .++..+++.+ ..|+.++-+...++..++. .... ............. +-..+.+|+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-----~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-----ADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-----cccccccCEEE
Confidence 478889998 34 4455555554 4788888776666655532 1100 0111111110111 11124789887
Q ss_pred echhhcCCCcchHHHHHHHHHHhccCCeEEEEEecCCCchh
Q psy1107 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196 (218)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~~~~~~ 196 (218)
..-=- -+....+..+...+.++..+++...+.....
T Consensus 76 v~vK~-----~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e 111 (305)
T PRK05708 76 LACKA-----YDAEPAVASLAHRLAPGAELLLLQNGLGSQD 111 (305)
T ss_pred EECCH-----HhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence 64211 1345678888999999998888887766543
No 485
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=57.14 E-value=88 Score=26.08 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=56.7
Q ss_pred CCCcEEEEecCCCchhHHH----Hhhc---CCccEEEEEeC----CHHHHHHHHhCCc----ccCCCceEEec---cCCC
Q psy1107 78 VGEGVLLEVGCGVGNFIFP----LLSW---SKICYIHACDI----SPRAVNFFKLNPL----YDASKMNVFPC---DVTE 139 (218)
Q Consensus 78 ~~~~~vLDiGcG~G~~~~~----~~~~---~~~~~v~~~D~----s~~~~~~~~~~~~----~~~~~i~~~~~---d~~~ 139 (218)
.+...|+|+|.|.|..=.. ++.+ -|..++|+++. +...++.+..+.. ..+-...|..+ ++.+
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 4667999999999944222 2322 25669999998 6666655555422 22333444442 1111
Q ss_pred ccc-ccCCCCCcccEEEechhhcCCCc-----chHHHHHHHHHHhccCCeEEEE
Q psy1107 140 DDI-LNQVPHNSVDIATLIFVLSAIHP-----NKFSTVVKNLFIMLKSGGIILF 187 (218)
Q Consensus 140 ~~~-~~~~~~~~~D~i~~~~~l~~~~~-----~~~~~~l~~~~~~Lk~gG~li~ 187 (218)
... ......+..=+|-|.+.++++.. ..+...+-...+.|+|.-.+++
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 100 01122222223334556788852 1233344455567899964444
No 486
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=56.65 E-value=1.2e+02 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=26.4
Q ss_pred cEEEEecCCCch--hHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy1107 81 GVLLEVGCGVGN--FIFPLLSWSKICYIHACDISPRAVNFFK 120 (218)
Q Consensus 81 ~~vLDiGcG~G~--~~~~~~~~~~~~~v~~~D~s~~~~~~~~ 120 (218)
.+|.=+|.|.-. ++..+++.+ .+|+++|.++..++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHH
Confidence 467778888433 344444544 48999999999888754
No 487
>PRK08339 short chain dehydrogenase; Provisional
Probab=56.57 E-value=43 Score=25.97 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCc---hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcc-cCCCceEEeccCCCcccccC----C-CCC
Q psy1107 79 GEGVLLEVGCGVG---NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLY-DASKMNVFPCDVTEDDILNQ----V-PHN 149 (218)
Q Consensus 79 ~~~~vLDiGcG~G---~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~----~-~~~ 149 (218)
.++++|=.|++.| ..+..+++.+ .+|+.++.+...++.+...... .+.++.++.+|+.+..-... . .-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG--ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 3567787777655 2333444444 5888888887765554433221 23468888999987532111 0 114
Q ss_pred cccEEEech
Q psy1107 150 SVDIATLIF 158 (218)
Q Consensus 150 ~~D~i~~~~ 158 (218)
..|+++.+.
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 688887654
No 488
>PLN02253 xanthoxin dehydrogenase
Probab=56.42 E-value=32 Score=26.79 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=44.1
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCC-C-----CCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQV-P-----HNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-----~~~~ 151 (218)
++++|=.|++ |.++..++... ...+++.++.+....+........ +.++.++.+|+.+.+-.... . -+..
T Consensus 18 ~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 18 GKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4577777754 44444444321 225888888877655444333221 24688889999875321110 0 1368
Q ss_pred cEEEechh
Q psy1107 152 DIATLIFV 159 (218)
Q Consensus 152 D~i~~~~~ 159 (218)
|+++....
T Consensus 96 d~li~~Ag 103 (280)
T PLN02253 96 DIMVNNAG 103 (280)
T ss_pred CEEEECCC
Confidence 88887553
No 489
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=56.29 E-value=75 Score=25.59 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=54.2
Q ss_pred cCCCcEEEEecCC-CchhHHHHhhcCCccE-EEEEeCCHHHHHHHHhCCcccCCCceEEec---cCCCcccccCCCCCcc
Q psy1107 77 DVGEGVLLEVGCG-VGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPC---DVTEDDILNQVPHNSV 151 (218)
Q Consensus 77 ~~~~~~vLDiGcG-~G~~~~~~~~~~~~~~-v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~~ 151 (218)
..++.+||-.|+| .|..+..++... +.+ +++++.++...+.++..-. ..++.. ++.. .+........+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-----~~~v~~~~~~~~~-~l~~~~~~~~~ 231 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGA-----TYVVNPFKEDVVK-EVADLTDGEGV 231 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-----cEEEcccccCHHH-HHHHhcCCCCC
Confidence 3456667666664 455566666553 244 8888888877777665411 111111 1100 00011223468
Q ss_pred cEEEechhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 152 DIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 152 D~i~~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
|+++.. .. ....+..+.+.|+++|.++....
T Consensus 232 d~vld~-----~g---~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 232 DVFLEM-----SG---APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CEEEEC-----CC---CHHHHHHHHHhhcCCCEEEEEcc
Confidence 988852 11 12456778889999999887653
No 490
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.26 E-value=86 Score=24.47 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=39.0
Q ss_pred CcEEEEecCC-CchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC--CCCc
Q psy1107 80 EGVLLEVGCG-VGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV--PHNS 150 (218)
Q Consensus 80 ~~~vLDiGcG-~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~--~~~~ 150 (218)
++++|=.|++ ++.++..+++.. ...+|+.+.-+....+.+++..... .....+.+|+.+..-.. .. .-+.
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL-GAFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc-CCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 4678888875 344444444331 2247776654432222222221111 13456788987653111 11 1146
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
.|+++.+..
T Consensus 89 iD~lv~nAG 97 (272)
T PRK08159 89 LDFVVHAIG 97 (272)
T ss_pred CcEEEECCc
Confidence 899888654
No 491
>PRK06194 hypothetical protein; Provisional
Probab=56.18 E-value=39 Score=26.38 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=44.0
Q ss_pred CcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCcc
Q psy1107 80 EGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNSV 151 (218)
Q Consensus 80 ~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~~ 151 (218)
+.++|=.|++ |..+..++... ...+|+.+|.+...++.........+.++.++.+|+.+..-... + ..+..
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4577766654 44444444321 23588889987765544433322223467788999887421111 0 01357
Q ss_pred cEEEechhh
Q psy1107 152 DIATLIFVL 160 (218)
Q Consensus 152 D~i~~~~~l 160 (218)
|+++.....
T Consensus 85 d~vi~~Ag~ 93 (287)
T PRK06194 85 HLLFNNAGV 93 (287)
T ss_pred CEEEECCCC
Confidence 988886543
No 492
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=55.85 E-value=90 Score=23.85 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=56.7
Q ss_pred hhcCCCcEEEEecCCCch--hHHHH--hhcCCccEEEEEeCCHHHHHHHHhCCcccC--CCceEEeccCCCcccccCCCC
Q psy1107 75 NQDVGEGVLLEVGCGVGN--FIFPL--LSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVFPCDVTEDDILNQVPH 148 (218)
Q Consensus 75 ~~~~~~~~vLDiGcG~G~--~~~~~--~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~ 148 (218)
+.-.+.+.|++.+|+-|. .++.| |.+....+++++-.++..+....+.+...+ ..+.|+.++..+. +...+
T Consensus 37 AAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~-~~~~~-- 113 (218)
T PF07279_consen 37 AAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE-VMPGL-- 113 (218)
T ss_pred hccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH-HHhhc--
Confidence 444566788999765442 23333 334455689999888877665555544333 3457777764221 11222
Q ss_pred CcccEEEechhhcCCCcchHH-HHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFVLSAIHPNKFS-TVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~l~~~~~~~~~-~~l~~~~~~Lk~gG~li~~~ 189 (218)
...|+++...- .++.. .+|+.+ + +.|.|-+++..
T Consensus 114 ~~iDF~vVDc~-----~~d~~~~vl~~~-~-~~~~GaVVV~~ 148 (218)
T PF07279_consen 114 KGIDFVVVDCK-----REDFAARVLRAA-K-LSPRGAVVVCY 148 (218)
T ss_pred cCCCEEEEeCC-----chhHHHHHHHHh-c-cCCCceEEEEe
Confidence 25777775321 13444 444432 2 45667666644
No 493
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=55.82 E-value=88 Score=25.55 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=52.0
Q ss_pred CCCcEEEEecCC-CchhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 78 VGEGVLLEVGCG-VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 78 ~~~~~vLDiGcG-~G~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
.++.++|-.|+| .|..+..+++.. ..++++++.++.....+.+.... . .++ +..+........ ..+|+++-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga---~-~~i--~~~~~~~~~~~~-~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGA---D-DYL--VSSDAAEMQEAA-DSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCC---c-EEe--cCCChHHHHHhc-CCCcEEEE
Confidence 456777777765 556666666553 34788888777665555432211 1 111 111100001111 24788874
Q ss_pred chhhcCCCcchHHHHHHHHHHhccCCeEEEEEec
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 190 (218)
. .. ....+..+.+.|+++|.++....
T Consensus 251 ~-----~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 T-----VP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred C-----CC---chHHHHHHHHHhccCCEEEEECC
Confidence 2 21 12356777889999998887653
No 494
>PRK05884 short chain dehydrogenase; Provisional
Probab=55.72 E-value=84 Score=23.63 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=36.8
Q ss_pred EEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC----CCCCcccEEE
Q psy1107 82 VLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ----VPHNSVDIAT 155 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~~~~~D~i~ 155 (218)
++|=.|++.| .+..+++.. ...+++.++.+...++...... ++.++.+|+.+...... +. ..+|+++
T Consensus 2 ~vlItGas~g-iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv 74 (223)
T PRK05884 2 EVLVTGGDTD-LGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFP-HHLDTIV 74 (223)
T ss_pred eEEEEeCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHh-hcCcEEE
Confidence 4565666443 333333321 2358888888876655443321 35677788876532111 11 2578877
Q ss_pred ec
Q psy1107 156 LI 157 (218)
Q Consensus 156 ~~ 157 (218)
..
T Consensus 75 ~~ 76 (223)
T PRK05884 75 NV 76 (223)
T ss_pred EC
Confidence 65
No 495
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=55.57 E-value=82 Score=24.96 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=26.5
Q ss_pred cEEEEecCCC-c-hhHHHHhhcCCccEEEEEeCCHHHHHHHHh
Q psy1107 81 GVLLEVGCGV-G-NFIFPLLSWSKICYIHACDISPRAVNFFKL 121 (218)
Q Consensus 81 ~~vLDiGcG~-G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~ 121 (218)
.+|.=+|+|. | .++..++..+ .+|+.+|.++..++.+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHH
Confidence 4688889883 3 2333444444 489999999998876543
No 496
>PRK08818 prephenate dehydrogenase; Provisional
Probab=55.26 E-value=42 Score=27.97 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=40.7
Q ss_pred CcEEEEecC-C-Cc-hhHHHHhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccCCCCCcccEEEe
Q psy1107 80 EGVLLEVGC-G-VG-NFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156 (218)
Q Consensus 80 ~~~vLDiGc-G-~G-~~~~~~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~D~i~~ 156 (218)
..+|.=||. | .| .++..+.+.. ..+|+++|.+... ..+ ..... ...|+|+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~~---------------------~~~--~~~~v--~~aDlVil 57 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADPG---------------------SLD--PATLL--QRADVLIF 57 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCccc---------------------cCC--HHHHh--cCCCEEEE
Confidence 357888887 6 33 3344443332 4589999973100 000 00011 14788886
Q ss_pred chhhcCCCcchHHHHHHHHHHh---ccCCeE
Q psy1107 157 IFVLSAIHPNKFSTVVKNLFIM---LKSGGI 184 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~---Lk~gG~ 184 (218)
. .|......++.++... |+||.+
T Consensus 58 a-----vPv~~~~~~l~~l~~~~~~l~~~~i 83 (370)
T PRK08818 58 S-----APIRHTAALIEEYVALAGGRAAGQL 83 (370)
T ss_pred e-----CCHHHHHHHHHHHhhhhcCCCCCeE
Confidence 4 4545666777777765 677753
No 497
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=55.18 E-value=53 Score=25.37 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCcEEEEecCC-CchhHHHHhhcC--CccEEEEEeCCHH---HHHHHHhCCcccCCCceEEeccCCCccccc----CC--
Q psy1107 79 GEGVLLEVGCG-VGNFIFPLLSWS--KICYIHACDISPR---AVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV-- 146 (218)
Q Consensus 79 ~~~~vLDiGcG-~G~~~~~~~~~~--~~~~v~~~D~s~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-- 146 (218)
.++++|=.|++ ++..+..+++.. ...+++....+.. ..+.+.+... ...+..++.+|+.+.+-.. ..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE-PLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh-ccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 35688888874 455555555431 2246666543221 1111211111 1234667788988753211 11
Q ss_pred CCCcccEEEechh
Q psy1107 147 PHNSVDIATLIFV 159 (218)
Q Consensus 147 ~~~~~D~i~~~~~ 159 (218)
.-+.+|+++.+..
T Consensus 84 ~~g~iD~lv~nag 96 (258)
T PRK07370 84 KWGKLDILVHCLA 96 (258)
T ss_pred HcCCCCEEEEccc
Confidence 1146898887654
No 498
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=54.80 E-value=8.8 Score=30.65 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=22.6
Q ss_pred CcccEEEechh-hcCCCcchHHHHHHHHHHhccCCeEEEEEe
Q psy1107 149 NSVDIATLIFV-LSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189 (218)
Q Consensus 149 ~~~D~i~~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 189 (218)
+.||+|+.... ++.+.| .+.++++|+|.|++-.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVET 254 (289)
T ss_pred CCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEc
Confidence 57999988664 333332 2667889999888743
No 499
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.67 E-value=45 Score=25.52 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCchhHHHHhhcC--CccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCcccccC-C-----CCCc
Q psy1107 79 GEGVLLEVGCGVGNFIFPLLSWS--KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQ-V-----PHNS 150 (218)
Q Consensus 79 ~~~~vLDiGcG~G~~~~~~~~~~--~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~-----~~~~ 150 (218)
.++++|=.|+ +|..+..+++.. ...+|++++-++...+.........+.++.++.+|+.+..-... + .-+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 3567887775 455555554431 23589999888776554444333334467888899887532111 0 1135
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
.|+++....
T Consensus 88 ~d~li~~ag 96 (255)
T PRK07523 88 IDILVNNAG 96 (255)
T ss_pred CCEEEECCC
Confidence 788887654
No 500
>PRK08267 short chain dehydrogenase; Provisional
Probab=54.52 E-value=58 Score=24.99 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=43.8
Q ss_pred EEEEecCCCchhHHH----HhhcCCccEEEEEeCCHHHHHHHHhCCcccCCCceEEeccCCCccccc----CC-C--CCc
Q psy1107 82 VLLEVGCGVGNFIFP----LLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN----QV-P--HNS 150 (218)
Q Consensus 82 ~vLDiGcG~G~~~~~----~~~~~~~~~v~~~D~s~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-~--~~~ 150 (218)
++|-.|++. ..+.. +++.+ .+|++++-++..++.+..... +.++.++.+|+.+..-.. .. . .++
T Consensus 3 ~vlItGasg-~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAAS-GIGRATALLFAAEG--WRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCCc-hHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 567676654 33333 34434 589999888877665544322 346889999998753211 11 0 346
Q ss_pred ccEEEechh
Q psy1107 151 VDIATLIFV 159 (218)
Q Consensus 151 ~D~i~~~~~ 159 (218)
+|+++....
T Consensus 78 id~vi~~ag 86 (260)
T PRK08267 78 LDVLFNNAG 86 (260)
T ss_pred CCEEEECCC
Confidence 898887554
Done!