RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1107
(218 letters)
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 61.2 bits (149), Expect = 1e-12
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF----FKLNPLYDASKMNVFPCDVTE 139
L++GCG G + LL DISP A+ L DA ++ + D +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
D S D+ VL H V++NL +LK GG++
Sbjct: 61 LDP------GSFDVVVASNVLH--HLADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 59.4 bits (144), Expect = 8e-12
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDD 141
+L++GCG G L S + DISP A+ + A + V D E
Sbjct: 2 VLDLGCGTGALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S D+ L + + ++ +LK GG+++
Sbjct: 61 PE---ADESFDVIISDPPLHHLVEDLAR-FLEEARRLLKPGGVLVL 102
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 48.7 bits (113), Expect = 4e-07
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 3/184 (1%)
Query: 33 SKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN 92
S AE + + + Y L + + + + G +L++GCG G
Sbjct: 2 SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGR 61
Query: 93 FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152
+ Y+ D+SP + + + F +L S D
Sbjct: 62 LALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFD 121
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYM 212
L+ L +H + ++ L +LK GG ++ D + + R + +
Sbjct: 122 ---LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLE 178
Query: 213 RQDK 216
R D
Sbjct: 179 RGDI 182
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 45.3 bits (108), Expect = 9e-07
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L+VGCG G L + D+SP + + + D+ D
Sbjct: 1 LDVGCGTGLLAEALARRGG-ARVTGVDLSPEMLALARKRAPRKFVVGDA--EDLPFPD-- 55
Query: 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S D+ VL H ++ + +LK GG ++
Sbjct: 56 -----ESFDVVVSSLVLH--HLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 43.6 bits (103), Expect = 1e-05
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICY---IHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138
+L++GCG G F L K+ + DIS A+ K N A K+ +
Sbjct: 6 KVLDLGCGTGYLTFILA--EKLGPGAEVVGIDISEEAIEKAKEN----AKKLGYENVEFI 59
Query: 139 EDDILN----QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ DI Q+ NS D+ VL+ + P+ V++ + +LK GG+++ D L
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHL-PDPDK-VLEEIIRVLKPGGVLIVSDPVLLS 117
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 40.1 bits (94), Expect = 1e-04
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF--FKLNPLYDASKMNVFPCDVT 138
+L+ G G G F+ + ++ P A +L A ++ V D
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 139 EDDILNQVPHNSVDIATLIF------VLSAIHPNKFST---VVKNLFIMLKSGGIILF 187
E L P S D L+ + + + +LK GG+++
Sbjct: 62 ELLEL---PDGSFD---LVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 40.7 bits (96), Expect = 2e-04
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 27/125 (21%)
Query: 84 LEVGCGVGNFIFPLLS-WSKICYIHACDISP----RAVNFFKLNPLY---DASKMNVFPC 135
L++GCG G LL + + +I A DIS +A N + DA K+ +
Sbjct: 39 LDIGCGTGYLTRALLKRFPQAEFI-ANDISAGMLAQAKTKLSENVQFICGDAEKLPLED- 96
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+S D LI A+ + S + L +LK GG++ F +G
Sbjct: 97 -------------SSFD---LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT 140
Query: 195 MAQMR 199
+ ++R
Sbjct: 141 LHELR 145
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 37.5 bits (87), Expect = 0.002
Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 25/123 (20%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++GCG G + L + D SP AV F L D
Sbjct: 26 VLDIGCGTGILLRLLRERG--FDVTGVDPSPAAVLIFSLF-----------------DAP 66
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF----RDYGLHDMAQM 198
V D+ T VL + +++ L +LK GG++L D A
Sbjct: 67 DPAVLAGKYDLITAFEVLEHLPD--PPALLQQLRELLKPGGVLLISTPLADDDARLFANW 124
Query: 199 RFK 201
+
Sbjct: 125 HYL 127
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 37.7 bits (88), Expect = 0.002
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 29/177 (16%)
Query: 26 RQNSRLVSKHVAEEIEQNK-----KKYWDLFY------KRNETK--FFKDRNWTVNEFHE 72
N+ + E +K ++WD K N + + ++ +
Sbjct: 1 MTNTASDDTQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPG 60
Query: 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV 132
+L+VGCG G PL D S + + KL+ L ++
Sbjct: 61 --------LRVLDVGCGGGILSEPLARLGASVT--GIDASEKPIEVAKLHALESGVNID- 109
Query: 133 FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRD 189
+ ED L D+ T + VL H + ++ ++K GGI+
Sbjct: 110 YRQATVED--LAS-AGGQFDVVTCMEVL--EHVPDPESFLRACAKLVKPGGILFLST 161
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 35.4 bits (82), Expect = 0.004
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVT 138
+L++GCG G+ L + D+SP + + N +K+ + P
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELAREN-----AKLALGPRITFV 56
Query: 139 EDDILNQVP-HNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
+ D + + D +F+ ++ L +LK GG ++
Sbjct: 57 QGDAPDALDLLEGFD---AVFIGGGGGD--LLELLDALASLLKPGGRLVL 101
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 35.7 bits (83), Expect = 0.009
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSK----ICYIHACDISPRAVNFFKLNP 123
LL++GCG G+ L W++ + A D PRAV F + NP
Sbjct: 64 LLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108
>gnl|CDD|219292 pfam07091, FmrO, Ribosomal RNA methyltransferase (FmrO). This
family consists of several bacterial ribosomal RNA
methyltransferase (aminoglycoside-resistance
methyltransferase) proteins.
Length = 251
Score = 35.0 bits (81), Expect = 0.018
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 66 TVNEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124
++EF+ + + +L++ CG+ P + + HA DI V F +
Sbjct: 91 ILDEFYAEIFGALPPPRSVLDLACGLNPLAVPWMGLAPDATYHAYDIDAALVEF--IRAF 148
Query: 125 YDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH 164
+ + V P +V D+L P D+A +L +
Sbjct: 149 --LALLGV-PGEVRVRDLLTDPPAEPADVA---LLLKTLP 182
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 34.1 bits (79), Expect = 0.023
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139
G +L++GCG G L S + DI+ RA+ + N + + +V
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARAN----LAANGLENGEVFW 87
Query: 140 DDILNQVPHNSVD 152
D+ + V D
Sbjct: 88 SDLYSAVEPGKFD 100
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 34.5 bits (80), Expect = 0.023
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD-ASKMNVFPCDVTEDD 141
+L+V CG G+ L + DIS L + K V + D
Sbjct: 55 VLDVACGTGDMALLLAKSVGTGEVVGLDISE-----SMLEVAREKLKKKGVQNVEFVVGD 109
Query: 142 ILN-QVPHNSVDIATLIFVLSAI-HPNKFSTVVKNLFIMLKSGGIIL 186
N P NS D T+ F L + +K +K ++ +LK GG +L
Sbjct: 110 AENLPFPDNSFDAVTISFGLRNVTDIDK---ALKEMYRVLKPGGRLL 153
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 31.5 bits (72), Expect = 0.086
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++GCG G + L + DIS A+ K + + D
Sbjct: 1 ILDLGCGTGRVLRALARAGPS-SVTGVDISKEALELAK-----ERLRDKGPKVRFVVADA 54
Query: 143 LN-QVPHNSVDIATLIF-VLSAIHPNKFSTVVKNLFIMLKSGG 183
+ S D+ L + P + +++ +L+ GG
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L++G G G L + A DISP A+ + N + + V + ++
Sbjct: 119 LDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEF---IQSNLF 175
Query: 144 NQVPHNSVDI 153
+ +DI
Sbjct: 176 EPLAGQKIDI 185
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 30.6 bits (70), Expect = 0.45
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVN----FFKLNPLYDASKMNV 132
D +LEVG G G I +++ + DI+P AV KLN + + + V
Sbjct: 21 DKKGDRVLEVGTGSG--IVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNN-GVEV 77
Query: 133 FPCDVTE 139
D+ E
Sbjct: 78 IRSDLFE 84
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 30.4 bits (69), Expect = 0.49
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVN 117
+F R + E E + + V EG V++++ G+G F P+ SK ++A +++P AV
Sbjct: 82 YFSPRL--IGE-RERIAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVK 138
Query: 118 FFKLN 122
+ K N
Sbjct: 139 YLKEN 143
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 29.2 bits (66), Expect = 0.66
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 84 LEVGCGVGNFIFPLLSWSK---ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
+E+G G L K + +++ D P A L A ++ + D
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAGLADRVRLLRGDS--L 58
Query: 141 DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIM---LKSGGIILFRDY 190
+ L ++P S+D L+F+ H + V+ +L + L GGII+F D
Sbjct: 59 EALARLPDGSID---LLFI-DGDH--TYEAVLADLELWLPLLAPGGIIVFHDI 105
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 30.3 bits (69), Expect = 0.70
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
D+G VL ++GCG G L S + D++ RAV + N
Sbjct: 157 DLGGKVL-DLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN 201
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 30.0 bits (68), Expect = 0.79
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 52 YKRNETKFFKD--------RNWTVNEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSK 102
++ N +F D R E V + V EG +L++ GVG F P+ +
Sbjct: 155 HRENGCRFKVDVAKVYFSPRL--STE-RARVAELVKEGETVLDMFAGVGPFSIPIAKKGR 211
Query: 103 ICYIHACDISPRAVNFFKLN 122
++A DI+P AV + K N
Sbjct: 212 P-KVYAIDINPDAVEYLKEN 230
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 29.2 bits (65), Expect = 1.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 117 NFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP--NKFSTVVKN 174
N F +Y+ K +T D+ ++ IA I V+++I P N STV+
Sbjct: 61 NHFAAEYIYNVYKDEKTCGVLTGDE-----NGGTLIIAEPIGVVASITPSTNPTSTVIFK 115
Query: 175 LFIMLKSGGIILF 187
I LK+ I+F
Sbjct: 116 SLISLKTRNSIIF 128
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 28.8 bits (65), Expect = 2.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
L++G G G L + A DISP A+ + N
Sbjct: 115 LDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153
>gnl|CDD|225548 COG3002, COG3002, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 880
Score = 28.7 bits (64), Expect = 2.9
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 15 ILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV 74
DL + L QNS LV K + E +Q + + D E E +
Sbjct: 105 KQLADLPQALAEQNSDLVEKLLIEASQQPTDPSENWPLLCDTVSSRID-----LEHGEAL 159
Query: 75 NQDVGE 80
N V
Sbjct: 160 NDAVNH 165
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 28.4 bits (64), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVN 117
+LE+G G GN LL +K + A +I PR V
Sbjct: 39 TVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVA 72
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 28.0 bits (63), Expect = 3.8
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 72 EFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKLN 122
E++ + G +L++ CGVG F PL +K + +H +ISP AV + N
Sbjct: 287 EWL-ELAGGERVLDLYCGVGTFGLPL---AKRVKKVHGVEISPEAVEAAQEN 334
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 27.9 bits (63), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICY-IHACDISPRAVN 117
+L+ GCGVG+ PL + + A DISP+ V
Sbjct: 67 ILDAGCGVGSLSIPLA---RRGAKVVASDISPQMVE 99
>gnl|CDD|132626 TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated
methylase. Members of this small clade are
methyltransferases of the pfam08241 family and are
observed within operons for the biosynthesis of
pseudaminic acid, a component of exopolysaccharide and
flagellin glycosyl modifications. Notable among these
genomes is Pseudomonas fluorescens PfO-1. Possibly one
of the two hydroxyl groups of pseudaminic acid, at
positions 4 and 8 is converted to a methoxy group by
this enzyme.
Length = 204
Score = 27.5 bits (61), Expect = 4.2
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+LE+G +G + L +I+ +I+ AV K +N+ +
Sbjct: 47 ILELGANIGMNLAALKRLLPFKHIYGVEINEYAVE--KAKAY--LPNINIIQ-----GSL 97
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLF 176
+ N D+ VL I+P+ T + L+
Sbjct: 98 FDPFKDNFFDLVLTKGVLIHINPDNLPTAYRELY 131
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 28.3 bits (63), Expect = 4.3
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 20 LNKNLERQNSRLVSKHVAEEIEQNKKK---------YWDLFYKRNETKFFKDRNWTVNEF 70
+KN R +R+ H E K K Y+D F++ E F +R ++ E
Sbjct: 1264 ADKNANRGGARVRKYHEERGTEAPKSKVYALNIAGEYYDRFFE--EIGFVSERKQSIYEL 1321
Query: 71 H 71
H
Sbjct: 1322 H 1322
>gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.
Length = 239
Score = 27.6 bits (62), Expect = 4.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 112 SPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
P A+ ++ L +V P DVT D+
Sbjct: 28 WPPALRMGAVDELAKELPADVIPLDVTSDE 57
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 27.8 bits (62), Expect = 4.6
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV-FPC-DVTED 140
+LE+G G+G F L K + A D + K N + NV F C DVT
Sbjct: 41 VLELGAGIGRFTGELAK--KAGQVIALDFIESVI---KKNESINGHYKNVKFMCADVTSP 95
Query: 141 DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193
D+ + SVD+ ++L + + + + + LK GG I FR+ H
Sbjct: 96 DL--NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146
>gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted
[DNA metabolism, Restriction/modification].
Length = 524
Score = 27.8 bits (62), Expect = 4.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 83 LLEVGCGVGNFIFPLL-SWSKICY-------IHACDISPRAVNFFKLN 122
+++ CG G I LL +I Y I+ DI + K
Sbjct: 35 IIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82
>gnl|CDD|197673 smart00352, POU, Found in Pit-Oct-Unc transcription factors.
Length = 75
Score = 26.2 bits (58), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 85 EVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPL 124
+VG +G P S + IC A +S + N KL PL
Sbjct: 29 DVGLALGALYGPAFSQTTICRFEALQLSFK--NMCKLKPL 66
>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase.
This family consists of (Uracil-5-)-methyltransferases
EC:2.1.1.35 from bacteria, archaea and eukaryotes. A
5-methyluridine (m(5)U) residue at position 54 is a
conserved feature of bacterial and eukaryotic tRNAs. The
methylation of U54 is catalyzed by the
tRNA(m5U54)methyltransferase, which in Saccharomyces
cerevisiae is encoded by the nonessential TRM2 gene. It
is thought that tRNA modification enzymes might have a
role in tRNA maturation not necessarily linked to their
known catalytic activity.
Length = 353
Score = 27.8 bits (62), Expect = 4.8
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 35 HVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNE-FHEFVNQDVG--EGVLLEVGCGVG 91
+V E + +++ Y++ E F + N VN E+ + +G LLE+ CG G
Sbjct: 154 YVDETLPVAGREF---IYRQVENSFTQP-NAAVNIKMLEWACEVTQGSKGDLLELYCGNG 209
Query: 92 NFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
NF L + A +I+ +VN + N
Sbjct: 210 NFSLALA--QNFRRVLATEIAKPSVNAAQYN 238
>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase. This
family consists exclusively of proteins believed to act
as tRNA (uracil-5-)-methyltransferase. All members of
far are proteobacterial. The seed alignment was taken
directly from pfam05958 in Pfam 12.0, but higher cutoffs
are used to select only functionally equivalent
proteins. Homologous proteins excluded by the higher
cutoff scores of this model include other uracil
methyltransferases, such as RumA, active on rRNA
[Protein synthesis, tRNA and rRNA base modification].
Length = 353
Score = 27.8 bits (62), Expect = 4.8
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 35 HVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNE-FHEFVNQDVG--EGVLLEVGCGVG 91
+V E + +++ Y++ E F + N VN E+ + +G LLE+ CG G
Sbjct: 154 YVDETLPVAGREF---IYRQVENSFTQP-NAAVNIKMLEWACEVTQGSKGDLLELYCGNG 209
Query: 92 NFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
NF L + A +I+ +VN + N
Sbjct: 210 NFSLALA--QNFRRVLATEIAKPSVNAAQYN 238
>gnl|CDD|212112 cd10801, LamB_YcsF_like_1, uncharacterized proteins similar to the
Aspergillus nidulans lactam utilization protein LamB.
This mainly bacterial subfamily of the LamB/YbgL family,
contains many well conserved uncharacterized proteins.
Although their molecular function remains unknown, those
proteins show high sequence similarity to the
Aspergillus nidulans lactam utilization protein LamB,
which might be required for conversion of exogenous
2-pyrrolidinone to endogenous GABA.
Length = 233
Score = 27.5 bits (62), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 74 VNQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIHACDI 111
+N D+GEGV + + PL+S I C HA D
Sbjct: 3 LNADLGEGVGNDAA------LMPLISSCNIACGGHAGDE 35
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 27.6 bits (62), Expect = 5.2
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF 118
F D V+ E+ D +LE+G G G L +K Y A ++ PR F
Sbjct: 11 FLIDDR-VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKKVY--AIELDPRLAEF 66
Query: 119 FK 120
+
Sbjct: 67 LR 68
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 27.3 bits (61), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRA 115
L++GCG G + LL+ + I D+S R
Sbjct: 287 LDLGCGEGKLLRLLLAEKQFERIAGVDVSARE 318
>gnl|CDD|224570 COG1656, COG1656, Uncharacterized conserved protein [Function
unknown].
Length = 165
Score = 26.7 bits (59), Expect = 8.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 173 KNLFIMLKSGGIILFRDYGLH 193
+ + I K G I+L RD L+
Sbjct: 39 EIILIAKKEGRILLTRDRELY 59
>gnl|CDD|152816 pfam12381, Peptidase_C3G, Tungro spherical virus-type peptidase.
This is the protease for self-cleavage of the positive
single-stranded polyproteins of a number of plant viral
genomes. The protease activity of the polyprotein is at
the C-terminal end, adjacent to the putative RNA
polymerase.
Length = 231
Score = 26.8 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 35 HVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV 82
H E +E+ Y+ F K + +F R VN F + V D+G V
Sbjct: 51 HYLEALEEEDTLYFICFSKIIKLQFEPHRVTLVNGFQDLVVWDLGNSV 98
>gnl|CDD|140254 PTZ00227, PTZ00227, variable surface protein Vir14; Provisional.
Length = 418
Score = 26.8 bits (59), Expect = 9.1
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 18 DDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFY-------------KRNETKFFKD 62
DL K L R N +LV E E NKK+ +DL Y N+TK+FKD
Sbjct: 69 QDLFKKLSR-NIKLVHDSYVEGDEFNKKRCYDLNYWLYNEVYNNLQSSSENDTKYFKD 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,912,397
Number of extensions: 1011232
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 53
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)