RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1107
(218 letters)
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 64.2 bits (156), Expect = 9e-13
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 47 YWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYI 106
+ +Y E KF R ++ G +L++GCG G F+ +
Sbjct: 9 HTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCK--EEGIES 66
Query: 107 HACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPN 166
DI+ + F + K NV D E L +P +D + + + P
Sbjct: 67 IGVDINEDMIKFCE-------GKFNVVKSDAIEY--LKSLPDKYLDGVMISHFVEHLDPE 117
Query: 167 KFSTVVKNLFIMLKSGGIILF 187
+ ++ + +K I+
Sbjct: 118 RLFELLSLCYSKMKYSSYIVI 138
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 62.1 bits (150), Expect = 9e-12
Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 42/186 (22%)
Query: 45 KKYWDLFYKRNETKFFKDR---NWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSW 100
+ Y Y W + + F +V L+++G G ++ LLS
Sbjct: 33 RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT--VYQLLSA 90
Query: 101 SKICY-IHACDISPRAVNFFKL-----NPLYDASKM------------------------ 130
I D ++ S
Sbjct: 91 CSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150
Query: 131 --NVFPCDVTEDDIL--NQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGI 184
V P DV + L D F L A+ P+ F + ++ +L+ GG
Sbjct: 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 210
Query: 185 ILFRDY 190
+L
Sbjct: 211 LLLIGA 216
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 56.4 bits (135), Expect = 4e-10
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 61 KDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119
+R T+N+F+ +V ++ +L+ GCG + ++ HA DI + F
Sbjct: 30 NERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAF- 88
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH 164
L + + V + D+ L+ +L +
Sbjct: 89 ----LSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVLK 129
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 56.5 bits (136), Expect = 4e-10
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 15/172 (8%)
Query: 33 SKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN 92
+ ++ Y+ + F + E + G +LE+ G G
Sbjct: 5 HGLIESQLS-----YYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGY 59
Query: 93 FIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVD 152
+ L + A D S + A + + + + D+ + P D
Sbjct: 60 WTRHLSG--LADRVTALDGSAEMIAE--------AGRHGLDNVEFRQQDLFDWTPDRQWD 109
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGH 204
L+ + ++F +++ + GG++ F D H+ +
Sbjct: 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSE 161
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 56.1 bits (135), Expect = 5e-10
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 10/151 (6%)
Query: 67 VNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYD 126
+ F ++ N+ + +L+ G G + + +IS + +
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENF---- 65
Query: 127 ASKMNVFPCDVTEDDILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
+ + N ++++ DI S+ + + N + + +LK GG+
Sbjct: 66 SRENNF-KLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLA 124
Query: 186 LFRDYGLHDMAQMRFKPGHKISENLYMRQDK 216
D R+ G KI E +++ ++
Sbjct: 125 CINFLTTKD---ERYNKGEKIGEGEFLQLER 152
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 55.5 bits (133), Expect = 1e-09
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 39/180 (21%)
Query: 45 KKYWDLFYKRNETKFFKDR--NWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSWS 101
+ Y +Y + + + + + H+ F + L+++G G I+ +L+
Sbjct: 18 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT--IYQVLAAC 75
Query: 102 KIC-YIHACDISPRAVNF-----------FKLNPLYD--------------------ASK 129
I D + R + P A+
Sbjct: 76 DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 135
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
V CDV + L D + + + + + NL +LK GG ++
Sbjct: 136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 195
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 54.7 bits (131), Expect = 3e-09
Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 39/183 (21%)
Query: 45 KKYWDLFYKRNETKFFKD--RNWTVNEFHE-FVNQDVGEGVLLEVGCGVGNFIFPLLSWS 101
+ Y + +Y ++ + + F V +L+++G G I+ LLS
Sbjct: 19 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPT--IYQLLSAC 76
Query: 102 KIC-YIHACDISPRAVNFFK--LNPLYDA-----------------------------SK 129
+ I D + + + + L A +
Sbjct: 77 ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAI 136
Query: 130 MNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
V CDVT+ L V D L A P+ + T ++NL +LK GG ++
Sbjct: 137 KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM 196
Query: 188 RDY 190
D
Sbjct: 197 VDA 199
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 53.4 bits (128), Expect = 5e-09
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL------NPLYDASKMNVFPCD 136
++++GCG GN + LL I D+S + K P ++++F
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ D + D AT+I V+ + N+ K LF + +I+
Sbjct: 93 LVYRDK----RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 53.7 bits (128), Expect = 7e-09
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 61 KDRNWTVNEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF 119
++R ++EF+ + + + L ++ CG+ P + A DI R V F
Sbjct: 113 RERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF- 171
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP 165
++ + P D+L D + +L +
Sbjct: 172 -VDEALTRLNV---PHRTNVADLLEDRLDEPAD---VTLLLKTLPC 210
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 50.6 bits (121), Expect = 5e-08
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+D F + + ++ + + + VN+ G +LE G G GN LL
Sbjct: 14 HTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN--VLEFGVGTGNLTNKLLL--AGRT 69
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNVFPCDVT--EDDILNQVPHNSVDIATLIFVLSAI 163
++ + S K P + + E D L+ S+D + +
Sbjct: 70 VYGIEPSREMRMIAKEK----------LPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHL 119
Query: 164 HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
++ + + +L GG I+F D D
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD 155
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 51.1 bits (122), Expect = 5e-08
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+LE GCG+G L + I + DISP ++ + N K + + +I
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN----TEKNGIKNVKFLQANI 96
Query: 143 LN-QVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRF 200
+ +S D + FVL H + +K+L +LK GG I + D F
Sbjct: 97 FSLPFEDSSFDHIFVCFVL--EHLQSP-EEALKSLKKVLKPGGTITVIEG---DHGSCYF 150
Query: 201 KPGHKISENLYMRQDKTR 218
P K + + + +
Sbjct: 151 HPEGKKAIEAWNCLIRVQ 168
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal
domain, methyltransferase, plasmid, transferase; HET:
SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Length = 253
Score = 50.2 bits (119), Expect = 1e-07
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 61 KDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120
K+R ++ ++F+ +L++ CG+ I + CDI +
Sbjct: 87 KERLAELDTLYDFIFSAETPRRVLDIACGLNPLALY---ERGIASVWGCDIHQGLGDV-- 141
Query: 121 LNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL 160
+ P D+L P + D+A + +L
Sbjct: 142 ITPFAREKDW---DFTFALQDVLCAPPAEAGDLALIFKLL 178
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 48.6 bits (116), Expect = 2e-07
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G L+ D+S + + K E D
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR------FRGNLKVKYIEADY 101
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
D+ + + + K + +LK GI + D + A +
Sbjct: 102 SKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE 158
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 47.7 bits (114), Expect = 3e-07
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 18/135 (13%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
GV+++ GCG G + LL ++ Y DI+ A+ K D
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFATKLY--CIDINVIAL---------KEVKEKFDSVITLSD 67
Query: 141 DILNQVPHNSVDIATLIFVLSAI-HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
++P NSVD + + + +LK G ++ D+ +
Sbjct: 68 PK--EIPDNSVDFILFANSFHDMDDKQHV---ISEVKRILKDDGRVIIIDWRKENTGIGP 122
Query: 200 FKPGHKISENLYMRQ 214
++ E YM
Sbjct: 123 -PLSIRMDEKDYMGW 136
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 48.0 bits (114), Expect = 4e-07
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF------FKLNPLYDASKMNVFPCD 136
++++GCG GN + LL S I D+S R++ P ++ +
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+T D + D AT+I V+ + ++ + LF + +I+
Sbjct: 93 LTYQDK----RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 47.0 bits (111), Expect = 1e-06
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 20/184 (10%)
Query: 24 LERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVN------QD 77
+E+ ++ ++ + N W+ ++ + W N V
Sbjct: 2 MEKLSA-------IKKPDINVADAWEQYWNK-TLVNSTPVLWDANVERAVVVDLPRFELL 53
Query: 78 VGEGV-LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
+ L++ CG G L + D+S A+ A+ ++ D
Sbjct: 54 FNPELPLIDFACGNGTQTKFLS--QFFPRVIGLDVSKSALEIAAKE--NTAANISYRLLD 109
Query: 137 VTEDDILNQVPHNSVDIATLI-FVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
+ Q+ D + I K + ++L I+L G + + G +
Sbjct: 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI 169
Query: 196 AQMR 199
Sbjct: 170 DFFN 173
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 46.7 bits (111), Expect = 1e-06
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 12/144 (8%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+Y+D Y+R + + ++ F E ++V +L++ CG G L + Y
Sbjct: 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR--VLDLACGTGIPTLELA---ERGY 64
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAI 163
+ D+ + + A + N+ + + D+L N D T+ F +
Sbjct: 65 EVVGLDLHEEMLRVARRK----AKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119
Query: 164 HPNKFSTVVKNLFIMLKSGGIILF 187
+ + LK GG+ +
Sbjct: 120 DEEDLRKLFSKVAEALKPGGVFIT 143
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSKI 103
K+Y+ +F + + R+ + + + + + +L++ CGVG F F L
Sbjct: 4 KEYYRVFPTYTDINSQEYRSR-IETLEPLLMKYMKKRGKVLDLACGVGGFSFLL---EDY 59
Query: 104 CY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIATLIFVLS 161
+ + DIS + + A + D + D I +
Sbjct: 60 GFEVVGVDISEDMIRKAREY----AKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV 114
Query: 162 AIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
P + + V K + +LK G + L ++
Sbjct: 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLREL 148
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 47.1 bits (111), Expect = 2e-06
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 83 LLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFK--LNPLYDASKMNVFPCDVTE 139
L++ GCG G+ + LL + + I DISP+ + L+ + NV + +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 140 DDILNQVPH-NSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
IL + VDI T + V+ + ++ + + + +I+
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 45.6 bits (108), Expect = 2e-06
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPL 97
+ ++ F E F R ++E + V + EG +E+G G G F PL
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSEL-QAVKCLLPEGRGVEIGVGTGRFAVPL 65
Query: 98 LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIATL 156
+ S R A K V V + N + S D A +
Sbjct: 66 KI------KIGVEPSERMAEI--------ARKRGV---FVLKGTAENLPLKDESFDFALM 108
Query: 157 IFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFK 201
+ + + P + +K + +LK GG ++ ++
Sbjct: 109 VTTICFVDDPER---ALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 45.4 bits (107), Expect = 3e-06
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 20/162 (12%)
Query: 44 KKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSK 102
+ +YWD Y+ D + F + ++ +L +GCG + L
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFL-GG 64
Query: 103 ICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSA 162
+ + D S V + ++ DV + D P S D+ L A
Sbjct: 65 FPNVTSVDYSSVVVAAMQAC-YAHVPQLRWETMDVRKLDF----PSASFDVVLEKGTLDA 119
Query: 163 IHPNKFST-------------VVKNLFIMLKSGGIILFRDYG 191
+ + V+ + +L GG +
Sbjct: 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 45.7 bits (108), Expect = 5e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139
EG ++++GCG G LL + + D SP AV +LN + + C+
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPEALDRCEFMI 281
Query: 140 DDILNQVPHNSVD 152
++ L+ V +
Sbjct: 282 NNALSGVEPFRFN 294
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 44.5 bits (105), Expect = 6e-06
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 51 FYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACD 110
FY+ N T + +R +F+ + +LE+GCG G +L+ + A D
Sbjct: 16 FYRGNATAYA-ERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLA--AGFDVDATD 72
Query: 111 ISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST 170
SP V ++ D L + ++ +
Sbjct: 73 GSPELAAEASRRL----------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELAD 122
Query: 171 VVKNLFIMLKSGGIILF 187
V+K ++ LK GG+
Sbjct: 123 VLKLIWRALKPGGLFYA 139
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 44.8 bits (106), Expect = 6e-06
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-KLNPLYDASKMNVFPCDVTEDD 141
+L++G G+G + + H DI VN + + +D
Sbjct: 59 VLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGNN-------KIIFEAND 110
Query: 142 ILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
IL + P N+ D+ + A+ + + + + LK G +L DY +
Sbjct: 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 45.0 bits (106), Expect = 6e-06
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 81 GVLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFK-LNPLYDASKMNVF----P 134
+L++VGCG G + I D+S + + + + NV
Sbjct: 38 KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISS 97
Query: 135 CDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193
D + + V +D +I + H F ++ + L+ G I Y
Sbjct: 98 SDDFKFLGADSVDKQKID---MITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYADP 153
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 44.5 bits (105), Expect = 6e-06
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 23/172 (13%)
Query: 48 WDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS--WSKICY 105
WD + ++E + + N + + Q G +L + G G L S +
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQ----GKILCLAEGEGRNACFLASLGYE---- 53
Query: 106 IHACDISPRAVNFFKLNPLYDASKMNV--FPCDVTEDDILNQVPHNSVDIATLIFVLSAI 163
+ A D S + K L + + ++ + DI ++ + IF +
Sbjct: 54 VTAVDQSSVGLA--KAKQLAQEKGVKITTVQSNLADFDI----VADAWEGIVSIFC--HL 105
Query: 164 HPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMRQD 215
+ + ++ LK GG+ + Q+++ G +L + +
Sbjct: 106 PSSLRQQLYPKVYQGLKPGGVFI---LEGFAPEQLQYNTGGPKDLDLLPKLE 154
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 44.3 bits (104), Expect = 1e-05
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 31/171 (18%)
Query: 40 IEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-----------LLEVGC 88
+ + KY + F + F + + EF+++ + + +L +G
Sbjct: 8 LFSDHGKYVESF------RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGG 61
Query: 89 GVGNFIFPLLS------WSKICYIHACDISPRAVNFFK----LNPLYDASKMNVFPCDVT 138
G G +LS + S + +K + K +
Sbjct: 62 GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121
Query: 139 E--DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
E +L + D +I +L + +K +L + +L
Sbjct: 122 EYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLI 170
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 44.4 bits (104), Expect = 1e-05
Identities = 24/189 (12%), Positives = 65/189 (34%), Gaps = 11/189 (5%)
Query: 9 NSVVAPILTDDLNKNLERQNSRLVSKHVAEEI-EQNKKKYWDLFYKRNETKFFKDRNW-- 65
N + I + + S + I +Q K N + F +
Sbjct: 97 NRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGE 156
Query: 66 -TVNEFHEFVNQ-DVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
+ + + +++ + + + +++G GVG + + + + + + + + + +
Sbjct: 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 123 PLYDASKMNVF-----PCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFI 177
M + + D L++ + ++IFV + + +K F
Sbjct: 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFA 276
Query: 178 MLKSGGIIL 186
+K GG I+
Sbjct: 277 NMKEGGRIV 285
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 42.9 bits (101), Expect = 3e-05
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 14/149 (9%)
Query: 40 IEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLS 99
I +N + + D + G LLE+G G+F L
Sbjct: 4 ISRNYDQEIKDTAGHK-YAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQ- 61
Query: 100 WSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFV 159
I + S A++ A + D L V
Sbjct: 62 -EHFNDITCVEASEEAISH--------AQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHV 112
Query: 160 LSAIH-PNKFSTVVKNLFIMLKSGGIILF 187
L H + + + + L GG +
Sbjct: 113 LE--HIDDPVALLKRINDDWLAEGGRLFL 139
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.4 bits (100), Expect = 3e-05
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 77 DVGEG-VLLEVGCGVGNFIFPLLSWSKIC----YIHACDISPRAVNFFKLNPLYDASKMN 131
+ EG +L+VG G G ++ L SK+ ++A D+ VN+ + N
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYL---SKMVGEKGKVYAIDVQEEMVNYAWEK-VNKLGLKN 89
Query: 132 VFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
V E+ I +P N+VD + F + ++ L + K + D+
Sbjct: 90 VEVLKSEENKI--PLPDNTVDFIFMAFTFHEL-SEP-LKFLEELKRVAKPFAYLAIIDWK 145
Query: 192 LHDMAQMRFKPGHKISENLYMR 213
+ + P SE
Sbjct: 146 KEERDKGP-PPEEVYSEWEVGL 166
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 42.1 bits (99), Expect = 4e-05
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 84 LEVGCGVGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
LE+GC G F L + C + D+ PRA+ ++ DI
Sbjct: 56 LEIGCAAGAFTEKL---APHCKRLTVIDVMPRAIGRACQRT---KRWSHI---SWAATDI 106
Query: 143 LNQVPHNSVDIATLIFVLSAIH----PNKFSTVVKNLFIMLKSGGIILF 187
L D LI V ++ + T + N+ ML GG ++F
Sbjct: 107 LQFSTAELFD---LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 41.8 bits (98), Expect = 5e-05
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 71 HEFVNQDVGEG-VLLEVGCGVGNFIFPLLSW-SKICYIHACDISPRAVNFFKLNPLYDAS 128
H+++ V EG +++ CG GN L S + + DI +A+
Sbjct: 13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL 72
Query: 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAI---------HPNKFSTVVKNLFIML 179
V + +D N + + ++F L + P + +L
Sbjct: 73 IDRV---TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
Query: 180 KSGGIILFRDYGLHD 194
+GGII Y D
Sbjct: 130 VTGGIITVVIYYGGD 144
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 41.7 bits (98), Expect = 5e-05
Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query: 51 FYKRNETKFFKDRNWTV--NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHA 108
R+E F T +E E V + V G L++GCG G L + + A
Sbjct: 3 MVIRDENYFTDKYELTRTHSEVLEAV-KVVKPGKTLDLGCGNGRNSLYLAA--NGYDVDA 59
Query: 109 CDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKF 168
D + ++ + S N+ D+ N D VL +
Sbjct: 60 WDKNAMSIANVERI----KSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTI 115
Query: 169 STVVKNLFIMLKSGGIILFRDY 190
++ N+ K GG L
Sbjct: 116 PGLIANMQRCTKPGGYNLIVAA 137
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 41.1 bits (96), Expect = 1e-04
Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 15/174 (8%)
Query: 39 EIEQNK---KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
+++NK K +++ + + +K +E + + D + +L++GCG G
Sbjct: 2 SLKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML-PDFNQKTVLDLGCGFGWHCI 60
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIAT 155
+ + D+S R + K + ED + ++ ++
Sbjct: 61 -YAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC---YEQKAIEDIAI---EPDAYNVVL 113
Query: 156 LIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
L + F + K ++I LKS G +F H + + E
Sbjct: 114 SSLALH--YIASFDDICKKVYINLKSSGSFIFSV--EHPVFTADGRQDWYTDET 163
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+ +G G LLS ++ +I P + + V +V D
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV----IEGLGVDGVNVITGDE 181
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDY 190
+ D+ ++ A V +N+ + + I++R Y
Sbjct: 182 TV-IDGLEFDV-----LMVAALAEPKRRVFRNIHRYVDTETRIIYRTY 223
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 19/153 (12%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+ W L+ ++ + + W + + V L+V CG G L+ + +
Sbjct: 29 RVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRV-----LDVACGTGVDSIMLV---EEGF 80
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL----NQVPHNSVDIATLIF-- 158
+ + D S + + + + + E + L + + D +
Sbjct: 81 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 140
Query: 159 ----VLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
S ++ +KN+ M++ GG+++
Sbjct: 141 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 2e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 25 ERQNSRLVSKHVAE-----EIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHE--FVNQ 76
E Q RL A E + KK + + +R + ++N N + F Q
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ--VEKNKINNRIADKAFYQQ 148
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L +G G + + ++A + +PR + +L A + N+ P + D
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR--ELLDAC-AERENIIP--ILGDAN 132
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
Q N V+ +I+ A PN+ ++KN LK GG +
Sbjct: 133 KPQEYANIVEKVDVIYEDVA-QPNQAEILIKNAKWFLKKGGYGM 175
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.5 bits (92), Expect = 2e-04
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 71 HEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASK 129
H+F+ + + + ++++ G GN L SK ++A D+ +A+ L D
Sbjct: 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQR-LSDLGI 69
Query: 130 MNV-FPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFST-------VVKNLFIMLKS 181
N D E+ L+ + A T ++ + L+
Sbjct: 70 ENTELILDGHEN--LDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127
Query: 182 GGIILFRDYGLHD 194
GG + Y HD
Sbjct: 128 GGRLAIMIYYGHD 140
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 40.1 bits (93), Expect = 3e-04
Identities = 21/174 (12%), Positives = 53/174 (30%), Gaps = 12/174 (6%)
Query: 23 NLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFV-----NQD 77
+ E ++ +++++ +R + + + + F+
Sbjct: 2 DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY 61
Query: 78 VGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
G +L++GCG G + + I + DI+ ++N + K
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYER-AGIGEYYGVDIAEVSINDAR--VRARNMKRRFKVFF 118
Query: 137 VTEDDILNQV-PHNSVDIATLIFVLSAIHPNK--FSTVVKNLFIMLKSGGIILF 187
+D + D+ + F +N+ L+ GG +
Sbjct: 119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 39.4 bits (92), Expect = 3e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
GV+L+VG G G + L S I + + R V + ++
Sbjct: 43 GVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLV---------ELARQTHPSVTFHHG 91
Query: 141 DILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
I + + L + P + + L + ++ GG +L
Sbjct: 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 39.9 bits (93), Expect = 3e-04
Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 18/159 (11%)
Query: 38 EEIEQNKKKYWDL---FYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNF 93
++ +K WD F+ +N + + + + + F Q V + +L+VGCG G
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMW--DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYG 67
Query: 94 IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVD 152
+ L DIS + K ++ + D+ + + +
Sbjct: 68 TYKLS--RTGYKAVGVDISEVMIQKGKER----GEGPDL---SFIKGDLSSLPFENEQFE 118
Query: 153 IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
I L + + + +LKS G G
Sbjct: 119 AIMAINSLE--WTEEPLRALNEIKRVLKSDGYACIAILG 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 37/149 (24%)
Query: 2 QEEKSFSNSVVAPILTDDLNKNLERQNSR--LVSK---HVAEEIEQNKKKYWD----LFY 52
Q ++ F+ + P T+ + E + LV K +V+ +E +K +D L
Sbjct: 32 QLQEQFNKILPEP--TEGFAADDE-PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 53 KRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKI--CYIHACD 110
E + + N+ H + + E L+ ++ YI A
Sbjct: 89 TEFENCYLEG-----NDIHALAAKLLQENDT------------TLVKTKELIKNYITARI 131
Query: 111 ISPRAVNFFKLNPLYDASK------MNVF 133
++ R + + L+ A + +F
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Score = 32.3 bits (73), Expect = 0.11
Identities = 40/210 (19%), Positives = 66/210 (31%), Gaps = 64/210 (30%)
Query: 6 SFSNSVVA--PILTDDLNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKF-FKD 62
N VV+ P ++L N L ++Q++ F +R K F +
Sbjct: 373 GAKNLVVSGPP-------QSLYGLNLTLRKAKAPSGLDQSRIP----FSER---KLKFSN 418
Query: 63 RNWTVNE-FHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKL 121
R V FH + + + ++ +A DI +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDL-------------VKNNVSFNAKDI---QI----- 457
Query: 122 NPLY---DASKMNVFPCDVTEDDILNQVPHNSVD-IATLIFVLSAIH-----PNKFSTVV 172
P+Y D S + V ++E I++ + V T F A H P S +
Sbjct: 458 -PVYDTFDGSDLRVLSGSISE-RIVDCIIRLPVKWETTTQF--KATHILDFGPGGASGLG 513
Query: 173 KNLFIMLKSG---GIILF--------RDYG 191
L K G +I+ DYG
Sbjct: 514 V-LTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 39.7 bits (93), Expect = 3e-04
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV----FPC 135
+G +L+VGCG G S + CD+S AV +AS+ +
Sbjct: 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV---------EASRATLAANGVEG 247
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLS--AIHPNKFST--VVKNLFI----MLKSGGIILF 187
+V ++ ++V D ++S H ++ + L L SGG +
Sbjct: 248 EVFASNVFSEVK-GRFD-----MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301
Query: 188 ---RDYGLHDMAQMRFKPGHKISEN 209
D+ F I++
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQT 326
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 39.3 bits (91), Expect = 4e-04
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 6/114 (5%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
L+ G G+G LL+ + + K L +
Sbjct: 95 SRALDCGAGIGRITKNLLTK-LYATTDLLEPVKHMLEEAKRE-LAGMPVGKFILASMETA 152
Query: 141 DILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ P N+ D+ + + + F K+ L G I F++
Sbjct: 153 TL----PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG 202
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 39.3 bits (92), Expect = 4e-04
Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 19/144 (13%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKIC 104
+ Y+ ++ N + + ++ E +L++GC G +
Sbjct: 3 NSPKNSLYEEKSGHYYNAVN---PNLLKHIKKEWKE--VLDIGCSSGALGAAIK--ENGT 55
Query: 105 YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIH 164
+ + P A K +V D+ D+ D VL +
Sbjct: 56 RVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDM--PYEEEQFDCVIFGDVLEHLF 107
Query: 165 -PNKFSTVVKNLFIMLKSGGIILF 187
P ++ + +K G+IL
Sbjct: 108 DPWAV---IEKVKPYIKQNGVILA 128
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.0 bits (91), Expect = 4e-04
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 17/157 (10%)
Query: 40 IEQNKKKYWDLFYKR----NETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
+ +NKKK+ K ++T F + G +++G G G
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFG--ITAGTCIDIGSGPGALSI 59
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILN-QVPHNSVDI 153
L+ I A D S N + N+ + + D+ N + N D+
Sbjct: 60 -ALAKQSDFSIRALDFSKHMNEIALKN----IADANLNDRIQIVQGDVHNIPIEDNYADL 114
Query: 154 ATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189
+ + +T + ++ +LKSGG
Sbjct: 115 IVSRGSV--FFWEDV-ATAFREIYRILKSGGKTYIGG 148
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.7 bits (90), Expect = 6e-04
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICY-IHACDISPRAV 116
+D + T +E EF + G +LE+ G+G FP L + + + A ++S +
Sbjct: 62 LIQDADGT-SEAREFATRTGPVSGPVLELAAGMGRLTFPFL---DLGWEVTALELSTSVL 117
Query: 117 NFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAIHPNKFSTVVKNL 175
F+ L +A C + + D+ + ++ + + ++
Sbjct: 118 AAFRKR-LAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASV 176
Query: 176 FIMLKSGGIILF 187
L+ GG L
Sbjct: 177 REHLEPGGKFLL 188
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 38.7 bits (90), Expect = 6e-04
Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 19/140 (13%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFF-KLNPLYDASKMNVFPC 135
D +L++GCG G + D+S A+ K P +
Sbjct: 83 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL 142
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
S+D I+ L ++K GG ++ G +
Sbjct: 143 P---------FSDTSMDAIIRIYAPCKAEE---------LARVVKPGGWVITATPGPRHL 184
Query: 196 AQMRFKPGHKISENLYMRQD 215
+++ +++ + +
Sbjct: 185 MELKGLIYNEVHLHAPHAEQ 204
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 38.7 bits (90), Expect = 7e-04
Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 17/161 (10%)
Query: 43 NKKKYWDLFYKRNETKFFKDRNW-------TVNEFHEFVNQDVGEGVLLEVGCGVGNFIF 95
N F +FK + F+N+ + + ++GCG G
Sbjct: 3 NNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTL 62
Query: 96 PLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILN-QVPHNSVDI 153
L + K I D+ P + F N A K N + N + +D+
Sbjct: 63 FLADYVK-GQITGIDLFPDFIEIFNEN----AVKANCADRVKGITGSMDNLPFQNEELDL 117
Query: 154 ATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ I + + LK GG I +
Sbjct: 118 IWSEGAIYNIGFER---GMNEWSKYLKKGGFIAVSEASWFT 155
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 38.6 bits (90), Expect = 8e-04
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L++GCG G + + D + + + ++ N D
Sbjct: 62 LDLGCGTGQLTEKIA--QSGAEVLGTDNAATMI---------EKARQNYPHLHFDVADAR 110
Query: 144 NQVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
N +D +F + +H + ++ LKSGG + G ++ +
Sbjct: 111 NFRVDKPLD---AVFSNAMLHWVKEP-EAAIASIHQALKSGGRFVAEFGGKGNIKYIL 164
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 38.3 bits (89), Expect = 0.001
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 19/119 (15%)
Query: 83 LLEVGCGVGNFIFPLLSWSKI--CYIHACDISP----RAVNFFKLNPLYDASKMNVFPCD 136
L++G G G + I +I+P R + L D
Sbjct: 86 GLDLGAGYG---GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADN-------IT 135
Query: 137 VTEDDILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
V L NS D + +H V + +LK G++ D D
Sbjct: 136 VKYGSFLEIPCEDNSYDFI--WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED 192
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 37.8 bits (87), Expect = 0.001
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKIC----YIHACDISPRAVNFFKLNPLYDASKMNVFPCDV 137
+L +G G + S I I+ + +PR + + N+FP +
Sbjct: 80 RILYLGIASGTTASHM---SDIIGPRGRIYGVEFAPRVMRDLLTV---VRDRRNIFP--I 131
Query: 138 TEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
D + + V+ ++ A P + + VV+N L+ GG +L
Sbjct: 132 LGDARFPEKYRHLVEGVDGLYADVA-QPEQAAIVVRNARFFLRDGGYMLM 180
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 37.9 bits (88), Expect = 0.001
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
++GCG GN L + I D + + + + + + D+
Sbjct: 38 YDLGCGPGNSTELLTDRYGVNVITGIDSDDDML---------EKAADRLPNTNFGKADLA 88
Query: 144 NQVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
P D L++ + P+ V+ L L+SGG++ +
Sbjct: 89 TWKPAQKAD---LLYANAVFQWVPD-HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHI 142
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/145 (9%), Positives = 42/145 (28%), Gaps = 18/145 (12%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+ +DL ++ + ++ + LL+V CG G + L
Sbjct: 20 ELYDLVHQGKGKDYHREAADLAALVRRHSPKA---ASLLDVACGTGMHLRHLA---DSFG 73
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAI 163
+ ++S + ++ + D+ + T +F + +
Sbjct: 74 TVEGLELSADML---------AIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHL 124
Query: 164 HPNK-FSTVVKNLFIMLKSGGIILF 187
++ + G+++
Sbjct: 125 AGQAELDAALERFAAHVLPDGVVVV 149
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 37.8 bits (87), Expect = 0.001
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 7/111 (6%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKI-CYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTE 139
V+ V CG + + L + + D P A++ A+ + +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRL----AAGHALAGQITLHR 176
Query: 140 DDILNQVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRD 189
D D+ T + + + + + + LK GG ++
Sbjct: 177 QDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 37.8 bits (87), Expect = 0.002
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 71 HEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF-----------F 119
+ D + +L + G G + +I + A D A+
Sbjct: 40 SKTFLDDSNKRKVLAIDFGNGADLEKYFY-GEIALLVATDPDADAIARGNERYNKLNSGI 98
Query: 120 KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVL-SAIHPNKFSTVVKNLFIM 178
K D + +I F + + HP ++TV+ NL +
Sbjct: 99 KTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSEL 158
Query: 179 LKSGGIILF 187
SGG +L
Sbjct: 159 TASGGKVLI 167
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 12/146 (8%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLL--SWSKICYIHACDISPRAV 116
+ + + E + + ++GC G I D S V
Sbjct: 40 GYSNIITAIGMLAERFVTA--DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV 97
Query: 117 NFF--KLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKN 174
+ + + + D+ +I N + L F L + P ++
Sbjct: 98 ERCRQHIAAYHSEIPVEILCNDIRHVEIKNA------SMVILNFTLQFLPPEDRIALLTK 151
Query: 175 LFIMLKSGGIILFRDYGLHDMAQMRF 200
++ L G+++ + + ++
Sbjct: 152 IYEGLNPNGVLVLSEKFRFEDTKINH 177
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 37.5 bits (86), Expect = 0.002
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 82 VLLEVGCGVGN--FIFPLLSWSKICY-----IHACDISPRAVNFFKLNPLYDASKMNVFP 134
+++G GVGN L + + A D++ K ++N
Sbjct: 245 TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304
Query: 135 CDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
+ + + N + +I V + + + V+ + K G I+
Sbjct: 305 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKII 356
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 36.6 bits (84), Expect = 0.003
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 68 NEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDA 127
E V++++ G+G F PL +SK ++A + +P A ++ N
Sbjct: 108 EERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCEN----I 163
Query: 128 SKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
+ D + + D + +V + F LK G+I
Sbjct: 164 KLNKLNNVIPILADNRDVELKDVADRVIMGYVHKTHK------FLDKTFEFLKDRGVI 215
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 36.6 bits (84), Expect = 0.004
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 79 GEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISP-------RAVNFFKLNPLYDASKM 130
G VL ++GCG G ++ + + D+ + V + S+
Sbjct: 84 GATVL-DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRS 142
Query: 131 NV-FPCDVTE---DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIIL 186
NV F E VP +SVDI V + NK + K + +L+ GG +
Sbjct: 143 NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS-TNK-LALFKEIHRVLRDGGELY 200
Query: 187 FRDYGLHDM 195
F D
Sbjct: 201 FSDVYADRR 209
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 36.2 bits (84), Expect = 0.004
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 46 KYWDLFYKRN-----ETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSW 100
+D + + + F ++ V ++ L++ CG GN L
Sbjct: 8 HIYDKLIRADVDYKKWSDFIIEK---------CVENNLVFDDYLDLACGTGNLTENLC-- 56
Query: 101 SKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF- 158
A D+S ++ + K + D++ +I + D+ T
Sbjct: 57 -PKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK-----FDLITCCLD 110
Query: 159 VLSAIH-PNKFSTVVKNLFIMLKSGGIILF 187
+ I + K + LK GG+ +F
Sbjct: 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.005
Identities = 30/210 (14%), Positives = 55/210 (26%), Gaps = 60/210 (28%)
Query: 7 FSNSVVAPILT--DDLNKN------LERQNSRLVSKHVAEEIEQNKKKYWDLFYKR---- 54
S + I+ D ++ L + +V K V E + N K
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 55 --NETKFFKDRNWTVNEFHEFVNQDV------------------GEGVLLE--VGCG--- 89
+ + R+ N+ F +V + VL++ +G G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 90 -----------VGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138
F + W + SP V L L + P +
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-WLNL----KNCNSPETV-LEMLQKLL----YQIDPNWTS 215
Query: 139 EDDILNQVPHNSVDIATLI--FVLSAIHPN 166
D + + I + + S + N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Score = 28.7 bits (63), Expect = 1.8
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 49/132 (37%)
Query: 108 ACDISPRAV--------------NFFK-----------------LNP-----LYDASKMN 131
+PR + + +K L P ++D +++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLS 379
Query: 132 VFPCDV--TED--DIL--NQVPHNSVDIATLIFVLSAI--HPNKFSTVVKNLFIMLKSGG 183
VFP ++ + + + + + + S + P + + + ++++ LK
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK--- 436
Query: 184 IILFRDYGLHDM 195
+ L +Y LH
Sbjct: 437 VKLENEYALHRS 448
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 35.7 bits (82), Expect = 0.006
Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 39/185 (21%)
Query: 20 LNKNLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVG 79
LN+ L S A+ + Q + + L+++ +++ K V+ + Q
Sbjct: 13 LNEQLYSGPS-----SAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPA 67
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN----PLYDASKMNVFPC 135
V+ + GCG L+ S +H D++ + PL D
Sbjct: 68 SLVVADFGCGDC-----RLASSIRNPVHCFDLASLDPRVTVCDMAQVPLED--------- 113
Query: 136 DVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDM 195
SVD+A +F LS + N ++ +LK GG++ +
Sbjct: 114 -------------ESVDVA--VFCLSLMGTN-IRDFLEEANRVLKPGGLLKVAEVSSRFE 157
Query: 196 AQMRF 200
F
Sbjct: 158 DVRTF 162
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 35.8 bits (82), Expect = 0.006
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 20/170 (11%)
Query: 22 KNLERQNSRLVSKHVAEEIEQNKKKY--WDLFYKRNETKFFKDRNWTVNEFHEFVNQDVG 79
KNL S K V+ +K +Y W+ F +K V++ H +
Sbjct: 27 KNLVPGESVYGEKRVSISEGDDKIEYRAWNPF----RSKLAAAILGGVDQIH------IK 76
Query: 80 EG-VLLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDV 137
G +L +G G + + ++A + S R+ L L + N+ P V
Sbjct: 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR--DLINLAKK-RTNIIP--V 131
Query: 138 TEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
ED + + +IF A P++ V N L++GG +
Sbjct: 132 IEDARHPHKYRMLIAMVDVIFADVA-QPDQTRIVALNAHTFLRNGGHFVI 180
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 35.5 bits (82), Expect = 0.007
Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICY 105
+DLFY + + + + + LL+V CG G + +K
Sbjct: 10 DVYDLFYLGRGKDYAAEASDIADLVRSRTPEA---SSLLDVACGTGTHLEHF---TKEFG 63
Query: 106 -IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAI 163
++S + + + D+ + + + +F + +
Sbjct: 64 DTAGLELSEDMLTHARKR----LPDATLHQGDMRDFRLGRK-----FSAVVSMFSSVGYL 114
Query: 164 HPNK-FSTVVKNLFIMLKSGGIILF 187
+ V + L+ GG+++
Sbjct: 115 KTTEELGAAVASFAEHLEPGGVVVV 139
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 35.0 bits (81), Expect = 0.009
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 80 EGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTE 139
+ +L++GCG G I L+ ++ DI+ RA+ K N + ++ + V
Sbjct: 53 DDDILDLGCGYG-VIGIALA-DEVKSTTMADINRRAIKLAKEN--IKLNNLDNYDIRVVH 108
Query: 140 DDILNQVPHNSVDIATLIFVLS--AIHPNKFSTVVKNLFI----MLKSGGIILF 187
D+ V + +++ I K V+ + +LK G I
Sbjct: 109 SDLYENVKDRKYN-----KIITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWV 155
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 35.0 bits (80), Expect = 0.011
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 7/137 (5%)
Query: 79 GEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK-LNPLYDASKMNVFPCDV 137
G L+ G G+G LL + DI+ + K N F C +
Sbjct: 79 GTSCALDCGAGIGRITKRLLL-PLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL 137
Query: 138 TEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQ 197
+ +S D+ + +V+ + + ++ L+ GII+ +D +
Sbjct: 138 QDFTP----EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI 193
Query: 198 M-RFKPGHKISENLYMR 213
+ ++ R
Sbjct: 194 LDDVDSSVCRDLDVVRR 210
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 35.0 bits (80), Expect = 0.011
Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 31/171 (18%)
Query: 43 NKKKY----------WDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGN 92
+K+ + + + R E GE +L E+GCG G+
Sbjct: 2 MEKRLDYITDLMALGPTANARTIQRRQTAHRLAIA----EAWQVKPGEKIL-EIGCGQGD 56
Query: 93 FIFPLLSWS-KICYIHACDISP----------RAVNFFKLNPLYDASKMNVFPCDVTEDD 141
L ++ DI+ +A N PL D + D
Sbjct: 57 LSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLT---VHFNTNLSD 113
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGL 192
L + D L L + + + M + ++ +
Sbjct: 114 DLGPIADQHFDRVVLAHSLWYF-ASA-NALALLFKNMAAVCDHVDVAEWSM 162
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 34.8 bits (80), Expect = 0.012
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 73 FVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF----FKLNPLYDAS 128
F + +G ++++ G G I LLS I +I R + N L D
Sbjct: 43 FSYLPIRKGKIIDLCSGNG-IIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED-- 99
Query: 129 KMNVFPCDVTEDDILNQVPHNSVDIAT 155
++ + D+ I + +P DI T
Sbjct: 100 QIEIIEYDL--KKITDLIPKERADIVT 124
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 34.6 bits (79), Expect = 0.014
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 83 LLEVGCGVGNFIFPLLSWSKIC----YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT 138
+L +G G I + S I + + SPR V L + N+FP +
Sbjct: 80 VLYLGAASGTTISHV---SDIIELNGKAYGVEFSPRVVRELLLV---AQRRPNIFP--LL 131
Query: 139 EDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYG 191
D Q + V+ +++ + P++ + N LK G +L
Sbjct: 132 ADARFPQSYKSVVENVDVLY-VDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA 183
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 34.3 bits (79), Expect = 0.016
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 21/145 (14%)
Query: 46 KYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFPLLSWSKIC 104
+D + E+ +V + V G + ++GCG G L +
Sbjct: 9 YVYDELMQDVPYP----------EWVAWVLEQVEPGKRIADIGCGTGTATLLL---ADHY 55
Query: 105 YIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF-VLSAI 163
+ D+S + + A + N D D+ VD T++ L+ +
Sbjct: 56 EVTGVDLSEEMLEIAQEK----AMETNR-HVDFWVQDMRELELPEPVDAITILCDSLNYL 110
Query: 164 HPNK-FSTVVKNLFIMLKSGGIILF 187
+ +L GG +LF
Sbjct: 111 QTEADVKQTFDSAARLLTDGGKLLF 135
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 34.5 bits (79), Expect = 0.017
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNV-FPCDVTEDD 141
+ ++GCG G L + D ++ F N A + +
Sbjct: 50 IADIGCGTGGQTMVLAGHVT-GQVTGLDFLSGFIDIFNRN----ARQSGLQNRVTGIVGS 104
Query: 142 ILN-QVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ + + +D+ I+ AI+ F + LK GG + +
Sbjct: 105 MDDLPFRNEELDL---IWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFT 155
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 34.2 bits (78), Expect = 0.021
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 18/166 (10%)
Query: 49 DLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKI-CYIH 107
DL+Y + F + W + + + ++ GCG G L+
Sbjct: 2 DLYYNDDYVSFLVNTVWKITK-----PVHI-----VDYGCGYGYLGLVLMPLLPEGSKYT 51
Query: 108 ACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNK 167
D + + L+ + + E D ++ DIA L +H
Sbjct: 52 GIDSGETLLA--EARELFRLLPYDS---EFLEGDATEIELNDKYDIAICHAFL--LHMTT 104
Query: 168 FSTVVKNLFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISENLYMR 213
T+++ + +K GG I+ + G K SE + +
Sbjct: 105 PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLG 150
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 34.1 bits (78), Expect = 0.022
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 59 FFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNF 118
D VN +N G + ++G G G + L ++ +++A + S
Sbjct: 16 RVPDIRI-VNAIINLLNLPKGSVIA-DIGAGTGGYSVALA--NQGLFVYAVEPSIVMRQQ 71
Query: 119 FKLNPLYDASKMNVFPCDVTEDDILN-QVPHNSVDIATLIFVL 160
++P + N +P SVD I +
Sbjct: 72 AVVHP----------QVEWFTGYAENLALPDKSVDGVISILAI 104
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 33.2 bits (76), Expect = 0.046
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 83 LLEVGCGVGNFIFPLLSWSKI--CYIHACDISP----RAVNFFKLNPLYDASKMNVFPCD 136
+L+VGCG+G P + + + IS +A L +
Sbjct: 65 VLDVGCGIGK---PAVRLATARDVRVTGISISRPQVNQANARATAAGLANR-------VT 114
Query: 137 VTEDDILN-QVPHNSVDIATLIFVLSAIH-PNKFSTVVKNLFIMLKSGGIILFRDYGLHD 194
+ D ++ S D + S H P++ ++ + +L+ GG + D+ L
Sbjct: 115 FSYADAMDLPFEDASFDAVWALE--SLHHMPDR-GRALREMARVLRPGGTVAIADFVLLA 171
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 33.4 bits (76), Expect = 0.047
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 21/121 (17%)
Query: 76 QDVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC 135
+ V +L++G G G PL + + +V + + N
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLAR--MGAEVVGVEDDLASVLSLQKG-----LEANALKA 282
Query: 136 DVTEDDILNQVP-HNSVDIATLIFVLS--------AIHPNKFSTVVKNLFIMLKSGGIIL 186
D+ + D +++ A+ + V L+ GG+
Sbjct: 283 QALHSDVDEALTEEARFD-----IIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFF 337
Query: 187 F 187
Sbjct: 338 L 338
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 32.1 bits (73), Expect = 0.070
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNP 123
++L++G G K + + D++ RA+ +
Sbjct: 25 KIVLDLGTSTG---VITEQLRKRNTVVSTDLNIRALESHRGGN 64
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 32.5 bits (74), Expect = 0.077
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 71 HEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
+ + V V++++ GVG F I+A DI+P A+ K N
Sbjct: 186 RARIMKKVSLNDVVVDMFAGVGPFSIACK---NAKKIYAIDINPHAIELLKKN 235
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 32.3 bits (73), Expect = 0.080
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 18/106 (16%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICY-IHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
+LE GCG G + A D SP + + N A +V+ + +
Sbjct: 52 VLEAGCGHGPD---AARFGPQAARWAAYDFSPELLKLARAN----APHADVYEWNGKGE- 103
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
L + ++S P ++V+ L + L+
Sbjct: 104 -LPAGLGAPFGL-----IVSRRGP---TSVILRLPELAAPDAHFLY 140
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 32.1 bits (73), Expect = 0.096
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G+ + D + V A + V +
Sbjct: 25 VLDIGAGAGHTALAFS--PYVQECIGVDATKEMVEVASSF----AQEKGVENVRFQQGTA 78
Query: 143 LN-QVPHNSVDIATLIFVLSAIH--PNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
+ P +S DI T + H + V+ + +LK G L D+ + +
Sbjct: 79 ESLPFPDDSFDIITCRYAA---HHFSDV-RKAVREVARVLKQDGRFLLVDHYAPEDPVLD 134
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 32.2 bits (73), Expect = 0.11
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 19/149 (12%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPL 97
+E K D+ K+R +++++ G+G+ P+
Sbjct: 91 VHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPD-------ELVVDMFAGIGHLSLPI 143
Query: 98 LSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTEDDILNQVPHNSVDIATL 156
+ K + A + P F N V D + N D +
Sbjct: 144 AVYGK-AKVIAIEKDPYTFKFLVEN----IHLNKVEDRMSAYNMDNRDFPGENIADRILM 198
Query: 157 IFVLSAIHPNKFSTVVKNLFIMLKSGGII 185
+V+ + + K G II
Sbjct: 199 GYVVRTHE------FIPKALSIAKDGAII 221
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 31.7 bits (72), Expect = 0.12
Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 20/185 (10%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGV-LLEVGCGVGNFIFP 96
+E+ N + + + +R + ++ G +L+ GCG G
Sbjct: 6 KELTDNNPAHSENYAQRWRNLAAAGNDIY--GEARLIDAMAPRGAKILDAGCGQGRIGGY 63
Query: 97 LLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATL 156
L + + D+ P +++ K + + D++ D + D+
Sbjct: 64 LS--KQGHDVLGTDLDPILIDYAKQD----FPEARWVVGDLSVDQ----ISETDFDLIVS 113
Query: 157 IF-VLSAIHPNKFSTVVKNLFIMLKSGGIILF-----RDYGLHDMAQMRFKPGHKISENL 210
V+ + + + N+ L + G + R + D ++ + G ++ EN
Sbjct: 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLEL-ENA 172
Query: 211 YMRQD 215
+ D
Sbjct: 173 FESWD 177
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 31.3 bits (71), Expect = 0.19
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 84 LEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDIL 143
L++GCG G + L + D V+ + A V +
Sbjct: 57 LDLGCGEGWLLRALAD--RGIEAVGVDGDRTLVDAARA-----AGAGEVHLASYAQLAEA 109
Query: 144 NQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
D+ F L +H + ++ + +L GG ++
Sbjct: 110 KVPVGKDYDLICANFAL--LHQD-IIELLSAMRTLLVPGGALVI 150
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 31.4 bits (70), Expect = 0.19
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 3/107 (2%)
Query: 63 RNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWSK-ICYIHACDISPRAVNFFKL 121
R+ V + + + G L + + +A DIS +A+ K
Sbjct: 36 RDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE 95
Query: 122 NPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKF 168
N + + + + + + + + P F
Sbjct: 96 NFKLNNIPEDRYE--IHGMEANFFLRKEWGFGFDYVDLDPFGTPVPF 140
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 31.5 bits (70), Expect = 0.20
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 68 NEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISP--------RAVNF 118
EF E V Q +L++GCG G + +I + DI+ R +
Sbjct: 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDM 80
Query: 119 FKLNPLYDASKMNVFPCDVTEDDILNQV--PHNSVDIATLIFVLSAI--HPNKFSTVVKN 174
D +++ ++++ P DI + FV + +++N
Sbjct: 81 KNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRN 140
Query: 175 LFIMLKSGGIILFRDYGLHDMAQMRFKPGHKISEN 209
L GG + ++ + + N
Sbjct: 141 ACERLSPGGYFIGTTPNSFELIRRLEASETESFGN 175
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF
superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Length = 282
Score = 30.6 bits (68), Expect = 0.29
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 32/185 (17%)
Query: 38 EEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPL 97
EE+ + + + T R + + E V + G L+E G G +
Sbjct: 69 EEVRNEGRDWPANAH----TMIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILM 124
Query: 98 LSW-----SKICYIHACDI---SPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHN 149
+ + D P A V+E+++ +
Sbjct: 125 RGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184
Query: 150 SVDIATLIFVLSAIHPNKFS--------------------TVVKNLFIMLKSGGIILFRD 189
+ + F+ + + NL+ + GG ++ D
Sbjct: 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD 244
Query: 190 YGLHD 194
Y +
Sbjct: 245 YMMCP 249
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 30.5 bits (68), Expect = 0.31
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Query: 64 NWTVNEFHEFVNQDVGEGVLLEVGCGVGNFIFPLLSWS-KICYIHACDISPRAVNFFKLN 122
+ + +E E + Q + V +++G G G I+ L YI D +
Sbjct: 11 DLSKDELTEIIGQF--DRVHIDLGTGDGRNIYKLAINDQNTFYI-GIDPVKENLFDISKK 67
Query: 123 PLYDASKMNVFPCDVTEDDI--LNQVPHNSVDIATLIFVLSAIHPNKFST---VVKNLFI 177
+ SK + L N D +++F + ++ N+
Sbjct: 68 IIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVAD 127
Query: 178 MLKSGGIILFRD 189
+ K F
Sbjct: 128 LAKKEAHFEFVT 139
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 30.5 bits (69), Expect = 0.34
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 79 GEGVLLEVGCGVGNFIFPL---LSWSKICYIHACDISPRAVNFFKLNPLYDA--SKMNVF 133
+L+ G G L + ++A D+ + + + + S +
Sbjct: 203 PGMRVLDPFTGSG--TIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFL 259
Query: 134 PCDVTEDDILNQVPHNSVDI 153
D VD
Sbjct: 260 RADARHL----PRFFPEVDR 275
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 30.3 bits (68), Expect = 0.40
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPR 114
V LE+G G G PL+ ++ A D
Sbjct: 41 PVFLELGVGTGRIALPLI--ARGYRYIALDADAA 72
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 30.3 bits (67), Expect = 0.47
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Query: 44 KKKYWDLFYKRNETKFFKDRNWTV-NEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWS 101
KK F N K++ RN + + + + G +L++GC VG+ +
Sbjct: 9 FKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKW 68
Query: 102 KICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIF 158
+ DI R ++ + N + S+ P E D + + +
Sbjct: 69 GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 29.7 bits (67), Expect = 0.56
Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 45 KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKI 103
+ YW+ + + + + ++ + E +L++GCG G L SK
Sbjct: 3 ESYWE-----KVSGKNIPSSL---DLYPIIHNYLQEDDEILDIGCGSGKISLELA--SKG 52
Query: 104 CYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVT--EDDILN-QVPHNSVDIATLIFVL 160
+ DI+ A+ + ++ + +S D A + L
Sbjct: 53 YSVTGIDINSEAIRLAETA-ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFL 111
Query: 161 SAI-HPNKFSTVVKNLFIMLKSGGIILF 187
+++ P + S ++K +F +LK G +
Sbjct: 112 TSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.8 bits (67), Expect = 0.59
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 83 LLEVGCGVGNFIFPLLSWSKI--CYIHACDISPRAVNFFKLNPLYDASKMNVFP-CDVTE 139
+L++G G G L +W++ D+S K A ++ V
Sbjct: 40 ILDLGSGSGEM---LCTWARDHGITGTGIDMSSLFTAQAKRR----AEELGVSERVHFIH 92
Query: 140 DDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMAQMR 199
+D V + D+A V + F+ + L LK GGI+L + + +
Sbjct: 93 NDAAGYVANEKCDVA--ACVGATWIAGGFAGAEELLAQSLKPGGIML-----IGEPYWRQ 145
Query: 200 FKPGHKISENLYM 212
+I++ +
Sbjct: 146 LPATEEIAQACGV 158
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 29.5 bits (66), Expect = 0.61
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 82 VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
+LL+VG L+ +I A ++ N
Sbjct: 18 ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKN 58
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 29.4 bits (66), Expect = 0.69
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 77 DVGEGVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCD 136
+VG ++++GCG G F Y+ D+S + + + + + D
Sbjct: 41 EVGGLRIVDLGCGFGWFCR-WAHEHGASYVLGLDLSEKMLARAR--AAGPDTGITYERAD 97
Query: 137 VTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLHDMA 196
+ + + P +S D+A L + + + + + L GG +F H +
Sbjct: 98 LDKLHL----PQDSFDLAYSSLALH--YVEDVARLFRTVHQALSPGGHFVFST--EHPIY 149
Query: 197 QMRFKPGHKISEN 209
+PG I
Sbjct: 150 MAPARPGWAIDAE 162
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 29.4 bits (66), Expect = 0.73
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISP 113
LLEVG G G ++ L + S
Sbjct: 40 LLEVGAGTGYWLRRL----PYPQKVGVEPSE 66
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 29.4 bits (65), Expect = 0.99
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 4/94 (4%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L+ G + + DIS A K N + +
Sbjct: 51 VLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG 110
Query: 143 LNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLF 176
+ N D L A F + + F
Sbjct: 111 EKTIVINHDD----ANRLMAERHRYFHFIDLDPF 140
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 28.7 bits (64), Expect = 1.2
Identities = 4/52 (7%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 72 EFVNQDVGEG-VLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
E V + + + ++G + + A ++ +
Sbjct: 13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQ 64
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 28.3 bits (63), Expect = 1.5
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 81 GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLN 122
LL+VG LL + A ++ N
Sbjct: 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKN 64
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 28.2 bits (64), Expect = 1.6
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 83 LLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDDI 142
+L++G G G L S C I A D P AV+ + N A + + + + D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN----AQHLAIKNIHILQSDW 168
Query: 143 LNQVPHNSVDI 153
+ + +
Sbjct: 169 FSALAGQQFAM 179
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 28.5 bits (63), Expect = 1.7
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 83 LLEVGCGVGNFIFPLLS-WSKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTEDD 141
+L +G G + I + SPR + + N+ P + D
Sbjct: 77 VLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI---VEERRNIVP--ILGDA 131
Query: 142 ILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILF 187
+ V +IF P + ++ N + LK GG +
Sbjct: 132 TKPEEYRALVPKVDVIFE-DVAQPTQAKILIDNAEVYLKRGGYGMI 176
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic
protein structure initiative, PSI, natPro; HET: MSE SAH
GLU; 1.55A {Micromonospora echinospora}
Length = 257
Score = 28.4 bits (62), Expect = 1.7
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 129 KMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFR 188
+ + DV E + IA F L P K ++ + L G I+ F
Sbjct: 159 RSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAV--LEAIRPYLTKGSIVAFD 216
Query: 189 DYGLHD 194
+
Sbjct: 217 ELDNPK 222
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold,
structural genomics, PSI-2; NMR
{Methanothermobacterthermautotrophicus str}
Length = 153
Score = 27.8 bits (61), Expect = 1.7
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 68 NEFHEFVNQDVGE-GVLLEVGCGVGNFIFPLLSWSKICYIHACDISPRAVNFFK 120
N+ ++ + G ++EVG G ++ + + DI P +
Sbjct: 23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVR 76
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 27.9 bits (62), Expect = 2.4
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 35 HVAEEIEQNKKKYWDLFYKR----NETKFFK-DRNWTVNEFHEFVNQDVGEGVLLEVGCG 89
H ++ +++D + ET +K + E++ +L++G G
Sbjct: 8 HHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNP---CRVLDLGGG 64
Query: 90 VGNFIFPLLSWSKICYIHACDISP 113
G + L + + D S
Sbjct: 65 TGKWSLFLQ--ERGFEVVLVDPSK 86
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.6 bits (60), Expect = 3.0
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 25 ERQNSRLVSKHVAEEIEQNK-----KKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQ 76
E Q RL A ++ + + KK + + +R + K++ F Q
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 163
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 27.4 bits (60), Expect = 3.9
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 25 ERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNET--KFFKDRNWTVNEFHEFVNQ---DVG 79
R ++ S E + +Y+ FY +D T + + Q D
Sbjct: 101 CRGHTLERSVFSERTEESSAVQYFQ-FYGYLSQQQNMMQDYVRT-GTYQRAILQNHTDFK 158
Query: 80 EGVLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPC 135
+ ++L+VGCG G I + KI + A ++ A K N L D ++ V P
Sbjct: 159 DKIVLDVGCGSG--ILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD--RIVVIPG 214
Query: 136 DVTEDDILNQV 146
V E + QV
Sbjct: 215 KVEEVSLPEQV 225
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 26.9 bits (59), Expect = 4.1
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 75 NQDVGEGVLLEVGCGVGNF-IFPLLSWSKICYIHACDISPRAVNFFKLNPLYDASKMNVF 133
+ ++G +++ G G G L ++ + A DI P A+ K N +N
Sbjct: 47 DGNIGGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRN----CGGVNFM 100
Query: 134 PCDVTEDD 141
DV+E
Sbjct: 101 VADVSEIS 108
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 27.0 bits (60), Expect = 5.7
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 115 AVNFFKLNPLYDASKMNVFPCDVTEDDILNQVPHNSVDIATLIFVLSAIHP--NKFSTVV 172
N F +Y+ K ++ + ++D +V +++A + V++ + P N STV+
Sbjct: 72 IKNVFASKHVYNYIK-DMKTIGMLKEDNEKKV----MEVAVPLGVVAGLIPSTNPTSTVI 126
Query: 173 KNLFIMLKSG-GIIL 186
I +K+G I+
Sbjct: 127 YKTLISIKAGNSIVF 141
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 26.9 bits (59), Expect = 6.1
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 19/120 (15%)
Query: 82 VLLEVGCGVGNFIFPLLSW----SKICYIHACDISPRAVNFFKL---NPLYDASKMNVFP 134
V+L+VGCG G +LS + + D S + N L + +
Sbjct: 67 VVLDVGCGTG-----ILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL--EDTITLIK 119
Query: 135 CDVTEDDILNQVPHNSVD-IATLIFVLSAIHPNKFSTVVKNLFIMLKSGGIILFRDYGLH 193
+ E + P VD I + + + +V+ L GG + +
Sbjct: 120 GKIEEVHL----PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTIS 175
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 26.7 bits (59), Expect = 7.1
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 43 NKKKYWDLFYKR----NET-KFFKDRNW-TVNEF---------HEFVNQDVGEGVLLEVG 87
++ + D + E + FKD N V+ F H + QD + +L
Sbjct: 385 DRVYWNDGLDQYRLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGY 444
Query: 88 CGVGNFIFPLLSWSK 102
+ PL W+K
Sbjct: 445 RRPVLLLHPLGGWTK 459
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 26.4 bits (59), Expect = 8.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 127 ASKMNVFPCDVTEDDILNQV 146
+K + DV ++ L +
Sbjct: 55 PAKAPLLELDVQNEEHLASL 74
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 26.1 bits (57), Expect = 9.0
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 33 SKHVAEEIEQNKKKYWDLFYKRNET--KFFKDRNWTVNEFHEFVNQ---DVGEGVLLEVG 87
S E + +Y+ FY +D T + + Q D + ++L+VG
Sbjct: 1 SVFSERTEESSAVQYFQ-FYGYLSQQQNMMQDYVRT-GTYQRAILQNHTDFKDKIVLDVG 58
Query: 88 CGVGNFIFPLLSW-------SKICYIHACDISPRAVNFFKLNPLYDASKMNVFPCDVTED 140
CG G +LS+ KI + A ++ A K N L D ++ V P V E
Sbjct: 59 CGSG-----ILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD--RIVVIPGKVEEV 111
Query: 141 DILNQV 146
+ QV
Sbjct: 112 SLPEQV 117
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc
7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Length = 289
Score = 26.1 bits (57), Expect = 10.0
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 23 NLERQNSRLVSKHVAEEIEQNKKKYWDLFYKRNETKFFKDRNWTVNEFHEFVNQ 76
L Q L + Q + Y ++YKR+ +F RN E +
Sbjct: 153 ELSSQQRDLAQRL------QERLGYLGVYYKRDPDRFL--RNLPAYESQKLHQA 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,215,048
Number of extensions: 179060
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 125
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)