RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11070
(148 letters)
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 51.1 bits (123), Expect = 2e-09
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 44 SSTGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTM 101
S + G + +K+++ C C K +T S+LK H+ H G KP C GC +F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--CTWEGCDWRFARS 60
Query: 102 KQYSTHLKEHSNVSAPYMCD 121
+ + H ++H+ P+ C
Sbjct: 61 DELTRHYRKHTGAK-PFQCG 79
Score = 29.5 bits (67), Expect = 0.16
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C + CN+ F+ +L +HM RH
Sbjct: 78 CGV--CNRSFSRSDHLALHMKRH 98
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.1 bits (120), Expect = 2e-09
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 44 SSTGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTM 101
SS +S + + C C K + S+LK H H KP + C GC R+F
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS--CSWKGCERRFARS 62
Query: 102 KQYSTHLKEH 111
+ S H + H
Sbjct: 63 DELSRHRRTH 72
Score = 32.7 bits (75), Expect = 0.007
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 72 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKG 124
S + + + C GCG+ + S+HLK H+ P+ C +KG
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTGEKPFSCSWKG 54
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 50.7 bits (122), Expect = 5e-09
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN--- 113
C + C K ++ L NLK H+ H G KP CE GC + F ++ +H N
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYM--CEHEGCSKAFSN----ASDRAKHQNRTH 123
Query: 114 -VSAPYMCDYKG 124
PY+C G
Sbjct: 124 SNEKPYVCKLPG 135
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVR-H-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C + C+K F+ S+ H R H KP C+ GC +++ + L++H
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYV--CKLPGCTKRY----TDPSSLRKH 149
Score = 38.7 bits (91), Expect = 1e-04
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN 113
C C++ F + L H+ K C GC R+ + K L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFV--CHWGGCSRELRPFKAQY-MLVVHMR 60
Query: 114 VSA---PYMCDYKG 124
P+ C ++G
Sbjct: 61 RHTGEKPHKCTFEG 74
Score = 33.7 bits (78), Expect = 0.008
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C + C KR+T S+L+ H+
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVKTV 153
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 48.7 bits (117), Expect = 6e-09
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 59 CPIKNCNKRFTTLSNLKMHM-VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV- 114
C C + F+ L H +H K + C E CG+ F + HLKEH +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPACGKSF----NFKKHLKEHMKLH 63
Query: 115 --SAPYMCDYKG 124
+ Y+C++ G
Sbjct: 64 SDTRDYICEFSG 75
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKF 98
CP C K F +LK HM H + CE G
Sbjct: 41 CPEPACGKSFNFKKHLKEHMKLHSDTRDYI--CEF--SGPSS 78
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 48.1 bits (115), Expect = 7e-08
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-- 114
CP C K F NLK+H H G KP CE GC R+F S+ K+H +V
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFK--CEFEGCDRRFAN----SSDRKKHMHVHT 146
Query: 115 -SAPYMCD 121
Sbjct: 147 SDKSGPSS 154
Score = 37.3 bits (87), Expect = 4e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH--GKP--LTLCCEELGCGRKFQTMKQYSTHLKEH 111
P K+C++ F+T+ L H+ G P C C R+ ++ K L H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA-KYKLVNH 81
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 45.7 bits (109), Expect = 1e-07
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 116
C +NC K F + LK+H H P C GC ++F + H K H+
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYE--CPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 117 --PYMCDYKGVCMSLTLK 132
C + G +L LK
Sbjct: 62 KKDDSCSFVGKTWTLYLK 79
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.8 bits (107), Expect = 3e-07
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 116
C C K +T S+LK H+ H G KP C+ GCG KF + + H ++H+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYH--CDWDGCGWKFARSDELTRHYRKHTGHR- 64
Query: 117 PYMCD 121
P+ C
Sbjct: 65 PFQCQ 69
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C C++ F+ +L +HM RH
Sbjct: 68 CQK--CDRAFSRSDHLALHMKRH 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 44.4 bits (106), Expect = 8e-07
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
CP K C K F S ++ H+ HG + C E CG+ F S+ LK H
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAE--CGKAF----VESSKLKRH 53
Score = 41.3 bits (98), Expect = 1e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C + C KRF+ NL+ H+ H G +P C GC +KF ST+LK H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYV--CPFDGCNKKF----AQSTNLKSH 113
Score = 35.6 bits (83), Expect = 0.001
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K F S LK H + H G KP C GCG++F +L+ H
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKPFQ--CTFEGCGKRFSL----DFNLRTH 83
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
CP CNK+F +NLK H++ H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTH 117
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.2 bits (102), Expect = 1e-06
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 112
C I C ++L H +H CE CG++F+ + H +
Sbjct: 9 QCEI--CGFTCRQKASLNWHQRKHAETVAALRFP--CEF--CGKRFEKPDSVAAHRSKSH 62
Query: 113 NVSAPYMCDYKG 124
+ G
Sbjct: 63 PALLLAPQESSG 74
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 43.3 bits (103), Expect = 2e-06
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K+C +RF+ LK H RH G KP C+ C RKF S HLK H
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQ--CKT--CQRKFSR----SDHLKTH 85
Score = 42.9 bits (102), Expect = 3e-06
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C CNKR+ LS+L+MH +H G KP C+ C R+F S LK H
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ--CDFKDCERRFSR----SDQLKRH 57
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C ++F+ +LK H H G KP + C C +KF S L H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFS--CRWPSCQKKFAR----SDELVRH 115
Score = 31.0 bits (71), Expect = 0.066
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C +C K+F L H H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 41.4 bits (98), Expect = 4e-06
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 12/52 (23%)
Query: 64 CNKRFTTLSNLKMHMVRH----GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C+ RFT +KMH+++ C C + L H
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFH--CPH--CDTVIAR----KSDLGVH 64
Score = 27.9 bits (63), Expect = 0.46
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 64 CNKRFTTLSNLKMHM 78
C+ S+L +H+
Sbjct: 51 CDTVIARKSDLGVHL 65
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 41.3 bits (98), Expect = 5e-06
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
CP+++C++RF+ +L H+ H G KP C C R F S HL H
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRI--CMRNF----SRSDHLTTH 53
Score = 35.9 bits (84), Expect = 6e-04
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C + F+ +L H+ H G KP C+ CGRKF S K H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRH 81
Score = 25.5 bits (57), Expect = 3.6
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C ++F K H H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 42.2 bits (100), Expect = 1e-05
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-- 114
C + C K FT+L +L H + H G K T C+ GC +F T ++K+H N
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFT--CDSDGCDLRFTT----KANMKKHFNRFH 98
Query: 115 ---SAPYMCDYK 123
Y+C ++
Sbjct: 99 NIKICVYVCHFE 110
Score = 36.8 bits (86), Expect = 0.001
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C +NC K F + LK+H H P C GC ++F + LK H
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYE--CPHEGCDKRF----SLPSRLKRH 155
Score = 36.0 bits (84), Expect = 0.002
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C +C + L+ H+ +H G KP C+E GC + F HL H
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFP--CKEEGCEKGF----TSLHHLTRH 63
Score = 34.9 bits (81), Expect = 0.004
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C C+ RFTT +N+K H R K C CG+ F + LK H
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF----KKHNQLKVH 125
Score = 29.9 bits (68), Expect = 0.21
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH-GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
CP + C+KRF+ S LK H H G P C K ++ +LK
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS---CSFVG---KTWTLYLKHV 184
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.0 bits (94), Expect = 1e-05
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHS 112
CP+++C++RF+ L H+ H KP C C R F +TH++ H+
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQ--CRI--CMRNFSRSDHLTTHIRTHT 73
Score = 35.7 bits (83), Expect = 6e-04
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 67 RFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCD 121
++NL ++V +P C C R+F + + H++ H+ P+ C
Sbjct: 2 EPHPMNNLLNYVVPKMRPYA--CPVESCDRRFSRSDELTRHIRIHTGQK-PFQCR 53
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 39.2 bits (91), Expect = 4e-05
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 59 CPIKNCNKRFTTLSNLKMHM----VRHGKPLTLCCEELGCGRKFQTMKQYS---THLKEH 111
P K+C++ F+T+ L H+ V + C C R+ ++ K H++ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 112 SNVSAPYMC 120
+
Sbjct: 86 TG-EKSGPS 93
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 35.6 bits (82), Expect = 3e-04
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 56 LWSCPIKNCNKRFTTLSNLKMHMVRH 81
+ C C K F N++ H+ H
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTH 43
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.0 bits (81), Expect = 5e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 50 NSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRH 81
+ K++ C I+ C K + S+L+ H+ H
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 64 CNKRFTTLSNLKMHMVRHG----KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C++ +T +SN H V K C C ++F ++ H
Sbjct: 16 CSRVYTHISNFCRHYVTSHKRNVKVYP--CPF--CFKEFTR----KDNMTAH 59
Score = 28.7 bits (65), Expect = 0.15
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRH 81
CP C K FT N+ H+
Sbjct: 42 PCPF--CFKEFTRKDNMTAHVKII 63
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 35.9 bits (84), Expect = 5e-04
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV--SAPYM 119
C + F+ +L H+ H G KP C+ CGRKF S K H ++ P +
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRHRDIQHILPIL 60
Query: 120 CD 121
D
Sbjct: 61 ED 62
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.9 bits (79), Expect = 0.002
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 114
+ CP+ C F++ +LK H+ C C ++F + H+ + N+
Sbjct: 75 FVCPL--CLMPFSSSVSLKQHIRYTEHTKV--CPV--CKKEFTSTDSALDHVCKKHNI 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 59/165 (35%)
Query: 3 VATASSDSEGKTKELNKEIDDEEDAITEALQSL---GIN-KEYF-----------ISSTG 47
VA A +DS + ++ +A+ L G+ E + S
Sbjct: 281 VAIAETDSW----------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 48 G----------KNSKKQQLWSCPIKNCNKR-------FTTLSNLKMHMVRHGKPLTLC-- 88
N ++Q+ + N +L N ++V G P +L
Sbjct: 331 NEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 89 CEELGCGRKF-------QTMKQYSTHLKEHSN----VSAPYMCDY 122
L RK Q+ +S + SN V++P+
Sbjct: 390 NLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Score = 28.5 bits (63), Expect = 1.0
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 43/76 (56%)
Query: 6 ASSDSEGKTKELNKEID----------DEED----------------AITEALQ------ 33
D + KT+++ KEI+ ++ A E L+
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 34 --------SLGINKEY 41
SLG EY
Sbjct: 1755 ADATFAGHSLG---EY 1767
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.008
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 99 QTMKQYSTHLKEHSNVSAPYMCDYKGVCMSLTLKIS 134
Q +K+ LK +++ SAP +L +K +
Sbjct: 20 QALKKLQASLKLYADDSAP----------ALAIKAT 45
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 32.4 bits (73), Expect = 0.017
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 62 KNCNKRFTTLSNLKMHM--VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYM 119
K+C+ + TL L +HM H + + R + K+ ++ +
Sbjct: 23 KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK 82
Query: 120 CDY 122
C Y
Sbjct: 83 CMY 85
Score = 29.7 bits (66), Expect = 0.14
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 45 STGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRH 81
Q++ C C F +L +L +HM++
Sbjct: 69 LEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKT 103
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.3 bits (75), Expect = 0.022
Identities = 13/138 (9%), Positives = 30/138 (21%), Gaps = 18/138 (13%)
Query: 1 MPVATASSDSEGKTKELNKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCP 60
+ E ++ D+ ++A + + +K S G N+ + S
Sbjct: 79 GTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGN 138
Query: 61 IKN----------------CNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQY 104
+ N + + C C +
Sbjct: 139 VDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDL 196
Query: 105 STHLKEHSNVSAPYMCDY 122
H+ H +
Sbjct: 197 DAHVASHGLHGNMTLTSS 214
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.3 bits (72), Expect = 0.033
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 64 CNKRFTTLSNLKMHMVRH----GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C RF + H+ H GKP C+ CG+ F HL H
Sbjct: 41 CGLRFKRKDRMSYHVRSHDGSVGKPYI--CQS--CGKGF----SRPDHLNGH 84
Score = 29.4 bits (67), Expect = 0.18
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K F + +L H + H G KP + C CG +F + + H
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYS--CPV--CGLRF----KRKDRMSYH 54
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 29.6 bits (67), Expect = 0.060
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 77 HMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCD 121
KP C GCG +F + S H + HS V P
Sbjct: 3 SGSSGTGEKPFA--CTWPGCGWRFSRSDELSRHRRSHSGVK-PSGPS 46
Score = 28.4 bits (64), Expect = 0.14
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRH 81
+C C RF+ L H H
Sbjct: 14 ACTWPGCGWRFSRSDELSRHRRSH 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 29.7 bits (66), Expect = 0.068
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 64 CNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHS 112
C R S LK H+ H C C F+T + H+K +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKA 53
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 29.0 bits (66), Expect = 0.077
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C RF L LK H+ H
Sbjct: 17 CGTRFRHLQTLKSHLRIH 34
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.3 bits (64), Expect = 0.12
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRH 81
C C KRFT L+ H H
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTH 27
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 29.0 bits (66), Expect = 0.13
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C+ ++ + L++H H +P C C KQ S +L +H
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFK--CNY--CSFDT---KQPS-NLSKH 56
Score = 25.2 bits (56), Expect = 3.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C+ SNL HM +
Sbjct: 43 CSFDTKQPSNLSKHMKKF 60
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.9 bits (69), Expect = 0.13
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 22/141 (15%)
Query: 2 PVATASSDSEGKTKELNKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSC-- 59
+ A ++ + +A + +SS G N+ S
Sbjct: 13 IASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNAVGDSAPSSSV 72
Query: 60 ----------------PIKNCNKRFTTLSN-LKMHMVRHGKPLTLCCEELGCGRKFQTMK 102
+ N K +S+ M + P + C C +F TM
Sbjct: 73 NNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNV--CNARFSTMS 130
Query: 103 QYSTHLK-EHSNVSAPYMCDY 122
S HL+ +H + ++ +
Sbjct: 131 ALSEHLRSDHRDDASTLLATP 151
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 28.2 bits (64), Expect = 0.23
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 112
+ C + F +LK H H KP C C R F L H+
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYP--CGL--CNRAF----TRRDLLIRHA 50
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase
fold, structura genomics, joint center for structural
genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP:
d.38.1.1
Length = 152
Score = 29.7 bits (67), Expect = 0.25
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 25 EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRHGKP 84
++ E+L+S G+N G + S+ + PI +C F + G
Sbjct: 35 HESWEESLESYGLN--PADIFPGSRKSEVTPEVALPIIHCQADF-------RRPIHTGDA 85
Query: 85 LTLCCEELGCGRKFQTMKQ 103
L + +
Sbjct: 86 LAMELRPERLNPNSFQVHF 104
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 28.6 bits (65), Expect = 0.25
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 62 KNCNKRFTTLSNLKMHMVRH------GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
+C+K F L MH R+ C + CG+ F + H
Sbjct: 19 SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV--CSK--CGKTF----TRRNTMARH 66
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.5 bits (62), Expect = 0.28
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C RF +++L+ H++ H
Sbjct: 17 CGARFVQVAHLRAHVLIH 34
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.7 bits (63), Expect = 0.40
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSN 113
CP C+ RF + + H + C E C R F++ H E N
Sbjct: 45 CPY--CSLRFFSPELKQEHESKCEYKKLTCLE---CMRTFKSSFSIWRHQVEVHN 94
Score = 24.9 bits (53), Expect = 7.4
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 46 TGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYS 105
+G + ++++ C + CN + ++L H + +C C +F + +
Sbjct: 6 SGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLC-RNAAVCPY---CSLRFFSPELKQ 59
Query: 106 THLKEH 111
H +
Sbjct: 60 EHESKC 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 27.8 bits (63), Expect = 0.41
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C F NL H H G KP C CG +F +LK H
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYR--CNI--CGAQF----NRPANLKTH 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.52
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 37/139 (26%)
Query: 13 KTKELNKEIDDEEDAITEALQSLGINKEYFISSTG--GKNSKKQQLWSC-PIKNCNKRFT 69
KT + + I D +YF S G KN + + + + + RF
Sbjct: 457 KTFDSDDLIPPYLD-------------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF- 502
Query: 70 TLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGVCMSL 129
L K +RH T Q +K Y ++ ++ +
Sbjct: 503 -LEQ-K---IRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------- 548
Query: 130 TLKISFVKAVANN---SKY 145
+ F+ + N SKY
Sbjct: 549 ---LDFLPKIEENLICSKY 564
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 0.55
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLK-EHSNVSA 116
SCP T+ LK HM + + C CG++ +++ H+ H+++ +
Sbjct: 36 SCP-TCQAVGRKTIEGLKKHMENCKQEMFTCHH---CGKQLRSLAGMKYHVMANHNSLPS 91
Query: 117 P 117
Sbjct: 92 G 92
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 28.2 bits (64), Expect = 0.58
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C + F L++HMV H G P C C ++F L+ H
Sbjct: 72 CQETFRRRMELRLHMVSHTGEMPYK--CSS--CSQQF----MQKKDLQSH 113
Score = 26.7 bits (60), Expect = 1.7
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA--- 116
C+K+F + LK+H +H G KP C + CG+ + +L EH +
Sbjct: 11 PTCHKKFLSKYYLKVHNRKHTGEKPFE--CPK--CGKCY----FRKENLLEHEARNCMNR 62
Query: 117 ---PYMC 120
+ C
Sbjct: 63 SEQVFTC 69
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 27.4 bits (62), Expect = 0.71
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
+ C K F+ LK HM H G KP C+ C S+ L +H
Sbjct: 12 EVCGKCFSRKDKLKTHMRCHTGVKPYK--CKT--CDYAA----ADSSSLNKH 55
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.2 bits (57), Expect = 0.82
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 54 QQLWSCPIKNCNKRFTTLSNLKMHMVRHGKPLTL 87
+ + C C +RFT +L +H +H L
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF 37
Score = 24.6 bits (53), Expect = 2.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEH 111
C GCG++F + H +H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKH 31
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.6 bits (58), Expect = 1.00
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVR-------HGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K C + ++L +L+ H+++ L C C H+
Sbjct: 4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.1 bits (57), Expect = 1.2
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 46 TGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRH 81
+ G + + ++ +C I C K F + +L H + H
Sbjct: 2 SSGSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSH 35
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 1.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 48 GKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRHG 82
G + L+ C I C ++F + HM+ HG
Sbjct: 1 GSSGSSGLLYDCHI--CERKFKNELDRDRHMLVHG 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 25.8 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
CP C++ F+ +L +H RH
Sbjct: 14 CPD--CDRSFSRSDHLALHRKRH 34
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 27.9 bits (63), Expect = 1.4
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 2 PVATASSDSEGKTKELNKEIDDEEDAIT-EALQSLGINKEYFISSTGGKNSKK 53
PV ++S K+ DA E+L+ L I+ GG ++K
Sbjct: 31 PVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDA----VITCQGGSYTEK 79
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 26.2 bits (59), Expect = 1.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
+ C KRF S++K H H G KP C+ CG+ F S++L H
Sbjct: 33 QYCGKRFHQKSDMKKHTFIHTGEKPHK--CQV--CGKAF----SQSSNLITH 76
Score = 24.7 bits (55), Expect = 5.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
K C K F S L H++ H +P C+ CG++F + +K+H
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYP--CQY--CGKRF----HQKSDMKKH 48
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.0 bits (56), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 45 STGGKNSKKQQLWSCPIKNCNKRFTTLSNLKMHMVRHG 82
S+G ++ + C + C K FT + L+ H +HG
Sbjct: 2 SSGSSGLREAGILPCGL--CGKVFTDANRLRQHEAQHG 37
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 2.5
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 66 KRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
KR ++S +H L E+ + + +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREK--SEQVLDNPEDLRGPIHLS 231
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 25.9 bits (58), Expect = 3.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
K C + FT NL +H H +P T C+ C + F + HL++H
Sbjct: 21 KFCGRHFTKSYNLLIHERTHTDERPYT--CDI--CHKAF----RRQDHLRDH 64
Score = 25.5 bits (57), Expect = 3.8
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 62 KNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C+K F +L+ H H KP C+E CG+ F S L H
Sbjct: 49 DICHKAFRRQDHLRDHRYIHSKEKPFK--CQE--CGKGF----CQSRTLAVH 92
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 25.9 bits (58), Expect = 3.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K FT S HM H G +P C CG+KF + HL H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG--CGV--CGKKF----KMKHHLVGH 56
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.8 bits (52), Expect = 5.5
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRH 81
+ C + C + F +LK H H
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSH 25
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 23.8 bits (51), Expect = 5.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRHGKP 84
+SC C+K F +L H H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 25.5 bits (57), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 64 CNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K F+ +NL+ H H G KP C E CG+ F HL+ H
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYA--CPE--CGKSF----SQLAHLRAH 124
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 26.0 bits (56), Expect = 7.2
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 20 EIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIKNCNKRFTTL-------- 71
+ D + + + S E +S+ ++ Q W ++ +K +L
Sbjct: 154 GLGGLPDIVRDRVTSA---VEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPAR 210
Query: 72 ---SNLKMHMVRHGKPLTLC--CEELGCGRKFQTMKQYSTHLKEHSN 113
K + L L + CGR++ + H EH
Sbjct: 211 IPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYR 257
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 7.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 62 KNCNKRFTTLSNLKMHMVRH 81
K C F+ +L H+ H
Sbjct: 16 KECGMNFSWSCSLFKHLRSH 35
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum
ATCC 14 structural genomics, PSI-2, protein structure
initiative; 2.95A {Clostridium symbiosum atcc 14940}
Length = 225
Score = 25.2 bits (54), Expect = 8.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 23 DEEDAITEALQSLGINKE 40
E+A+T+AL L +
Sbjct: 13 TVEEAVTKALIELQTTSD 30
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.3 bits (50), Expect = 9.1
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRHGKP 84
+CP C KRF +L H+ H
Sbjct: 4 ACPE--CPKRFMRSDHLSKHITLHELL 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.376
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,069,563
Number of extensions: 106316
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 116
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)