RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11070
(148 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.6 bits (84), Expect = 6e-05
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 64 CNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 111
C K FT S HM H C CG+KF+ H+K H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 27.0 bits (59), Expect = 0.23
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRH 81
C K+F +L HM H
Sbjct: 29 RPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 34.6 bits (80), Expect = 2e-04
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
CP CNK+F +NLK H++ H
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTH 27
Score = 25.8 bits (57), Expect = 0.31
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEHS 112
C GC +KF +H+ H+
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTHA 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.9 bits (73), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRHGK 83
C C+K F +L H H +
Sbjct: 6 CDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 23.8 bits (52), Expect = 2.0
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEH 111
C+ GC + F + L H
Sbjct: 6 CDHPGCDKAFVR----NHDLIRH 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 31.1 bits (71), Expect = 0.004
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C C KRFT L+ H H
Sbjct: 5 CTWSYCGKRFTRSDELQRHKRTH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 30.8 bits (70), Expect = 0.005
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C + C K ++ L NLK H+ H
Sbjct: 5 CTFEGCRKSYSRLENLKTHLRSH 27
Score = 23.4 bits (51), Expect = 2.4
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEH 111
C GC + + +LK H
Sbjct: 5 CTFEGCRKSYSR----LENLKTH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 29.6 bits (67), Expect = 0.013
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
CP+++C++RF+ ++L H+ H
Sbjct: 5 CPVESCDRRFSRSADLTRHIRIH 27
Score = 24.2 bits (53), Expect = 1.3
Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 4/23 (17%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEH 111
C C R+F S L H
Sbjct: 5 CPVESCDRRFSR----SADLTRH 23
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.6 bits (67), Expect = 0.015
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C+ RFT +KMH+++
Sbjct: 14 CHARFTQSGTMKMHILQK 31
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.7 bits (67), Expect = 0.015
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
CP C K F +LK HM H
Sbjct: 4 CPEPACGKSFNFKKHLKEHMKLH 26
Score = 28.9 bits (65), Expect = 0.033
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 122
C E CG+ F K H+K HS+ Y+C++
Sbjct: 4 CPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 36
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.1 bits (63), Expect = 0.051
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C + C KRF+ NL+ H+ H
Sbjct: 5 CTFEGCGKRFSLDFNLRTHVRIH 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.7 bits (62), Expect = 0.067
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C+K F L MH R+
Sbjct: 14 CDKTFRQKQLLDMHFKRY 31
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.6 bits (62), Expect = 0.091
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C K F+ S L H H
Sbjct: 13 CGKAFSRSSILVQHQRVH 30
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.0 bits (60), Expect = 0.15
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 62 KNCNKRFTTLSNLKMHMVRH 81
+C++ F+ +L +H RH
Sbjct: 15 PDCDRSFSRSDHLALHRKRH 34
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.8 bits (60), Expect = 0.15
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C + F +LK H H
Sbjct: 8 CTRAFARQEHLKRHYRSH 25
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 27.2 bits (60), Expect = 0.18
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRH 81
+ C C K F N++ H+ H
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 26.0 bits (57), Expect = 0.39
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 72 SNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 112
++ ++ K C GC + F+ +H++ H
Sbjct: 5 GSIDKYVKEMPDKTF--ECLFPGCTKTFKRRYNIRSHIQTHL 44
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 26.4 bits (58), Expect = 0.20
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVRH 81
+ C + C KR+T S+L+ H+
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTV 27
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.5 bits (58), Expect = 0.21
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 58 SCPIKNCNKRFTTLSNLKMHMVRHG 82
+CP K C K F S ++ H+ HG
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTHG 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.0 bits (58), Expect = 0.26
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C + F+ +L H+ H
Sbjct: 9 CMRNFSRSDHLTTHIRTH 26
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 26.2 bits (57), Expect = 0.28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 54 QQLWSCPIKNCNKRFTTLSNLKMHMVRHG 82
Q + CP + C+KRF+ S LK H H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVHA 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 26.2 bits (58), Expect = 0.29
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C KRF +L H+ H
Sbjct: 8 CPKRFMRSDHLSKHIKTH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.7 bits (57), Expect = 0.38
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C K F+ +L H+ +
Sbjct: 11 CGKGFSRPDHLNGHIKQV 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 25.9 bits (57), Expect = 0.39
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 64 CNKRFTTLSNLKMHMVRH 81
C FTT +N H+ H
Sbjct: 13 CLSAFTTKANCARHLKVH 30
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.2 bits (55), Expect = 0.59
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C C +RFT +L +H +H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKH 31
Score = 24.5 bits (53), Expect = 1.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 89 CEELGCGRKFQTMKQYSTHLKEH 111
C GCG++F + H +H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKH 31
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.0 bits (54), Expect = 1.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 52 KKQQLWSCPIKNCNKRFTTLSNLKMHMVRHG 82
++ + C + C K FT + L+ H +HG
Sbjct: 2 REAGILPCGL--CGKVFTDANRLRQHEAQHG 30
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 24.0 bits (52), Expect = 1.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 62 KNCNKRFTTLSNLKMHMVRH 81
C K F+ S+L H H
Sbjct: 16 DECGKSFSHSSDLSKHRRTH 35
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 23.5 bits (50), Expect = 2.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 CPIKNCNKRFTTLSNLKMHMVRH 81
C + C K FT+L +L H + H
Sbjct: 5 CKEEGCEKGFTSLHHLTRHSLTH 27
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.0 bits (49), Expect = 3.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVR 80
+ C + C+K F+ S+ H R
Sbjct: 3 YMCEHEGCSKAFSNASDRAKHQNR 26
>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor
NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.2 bits (52), Expect = 4.4
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 70 TLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSN 113
TLS V G+ +T C F +K+ + +
Sbjct: 6 TLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGY 49
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 22.7 bits (48), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 57 WSCPIKNCNKRFTTLSNLKMHMVR 80
++C C+ RFTT +N+K H R
Sbjct: 3 FTCDSDGCDLRFTTKANMKKHFNR 26
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.5 bits (53), Expect = 4.7
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 52 KKQQLW--SCPIKNCNKRFTTLSNLKMHMVRHGKPLTLCC 89
+K+ +CP ++CNK+ N +
Sbjct: 34 RKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFK 73
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 22.8 bits (48), Expect = 4.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 56 LWSCPIKNCNKRFTTLSNLKMHMVRH 81
++ C +NC K F + LK+H H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSH 26
>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 146
Score = 24.3 bits (53), Expect = 5.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 18 NKEIDDEEDAITEALQSLGIN 38
N + +E I + LG++
Sbjct: 110 NLFLLQDEHRIRLVVNRLGLD 130
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.1 bits (50), Expect = 6.5
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 94 CGRKFQTMKQYSTHLK 109
C R F TH +
Sbjct: 21 CARYFIDSTNLKTHFR 36
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.3 bits (47), Expect = 7.6
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 87 LCCEELGCGRKFQTMKQYSTHLKEHSNV 114
+ C+ GCGR F +QY H K++ ++
Sbjct: 1 MPCDFPGCGRIFSN-RQYLNHHKKYQHI 27
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase
5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 23.4 bits (50), Expect = 8.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 85 LTLCCEELGCGRKFQTMKQYSTHLKEHSN 113
L L + CGR++ + H EH
Sbjct: 38 LNLTDGSILCGRRYFDGSGGNNHAVEHYR 66
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.0 bits (46), Expect = 9.2
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 54 QQLWSCPIKNCNKRFTTLSNLKMHMVRH 81
+Q+++C + C + F L++HMV H
Sbjct: 2 EQVFTCSV--CQETFRRRMELRLHMVSH 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.127 0.376
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,349
Number of extensions: 22146
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 54
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)