Query psy11074
Match_columns 710
No_of_seqs 630 out of 4045
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03863 M14_CPD_II The second 100.0 2.3E-81 4.9E-86 670.0 35.6 337 359-703 5-375 (375)
2 cd03869 M14_CPX_like Peptidase 100.0 1.7E-81 3.7E-86 669.7 34.1 339 359-701 4-405 (405)
3 cd03865 M14_CPE_H Peptidase M1 100.0 3.5E-80 7.6E-85 660.2 35.6 340 359-702 4-402 (402)
4 cd03864 M14_CPN Peptidase M14 100.0 9.5E-80 2.1E-84 660.2 37.1 339 360-702 1-392 (392)
5 KOG2649|consensus 100.0 2.6E-79 5.6E-84 639.7 30.9 340 359-705 68-457 (500)
6 cd06245 M14_CPD_III The third 100.0 1E-77 2.2E-82 641.2 36.9 335 359-702 1-362 (363)
7 cd03866 M14_CPM Peptidase M14 100.0 2E-74 4.3E-79 619.4 36.0 335 358-701 3-376 (376)
8 cd03868 M14_CPD_I The first ca 100.0 3.2E-73 7E-78 614.3 36.8 338 360-701 1-372 (372)
9 cd03867 M14_CPZ Peptidase M14- 100.0 6.7E-72 1.5E-76 605.2 36.6 338 360-701 1-395 (395)
10 cd03858 M14_CP_N-E_like Carbox 100.0 1.5E-67 3.2E-72 572.8 36.2 335 360-701 1-374 (374)
11 cd03869 M14_CPX_like Peptidase 100.0 1.1E-60 2.3E-65 510.0 27.8 248 45-296 4-405 (405)
12 KOG2649|consensus 100.0 1.5E-60 3.2E-65 498.8 25.7 251 45-299 68-456 (500)
13 cd03865 M14_CPE_H Peptidase M1 100.0 1.2E-59 2.5E-64 502.5 28.3 249 45-297 4-402 (402)
14 cd03863 M14_CPD_II The second 100.0 2.2E-59 4.8E-64 500.8 27.9 250 45-298 5-375 (375)
15 cd06245 M14_CPD_III The third 100.0 3.6E-58 7.9E-63 490.8 28.2 248 45-297 1-362 (363)
16 cd03864 M14_CPN Peptidase M14 100.0 5.4E-58 1.2E-62 492.1 27.8 248 46-297 1-392 (392)
17 cd03866 M14_CPM Peptidase M14 100.0 7.5E-53 1.6E-57 452.6 28.0 248 45-296 4-376 (376)
18 KOG2650|consensus 100.0 7.3E-53 1.6E-57 448.3 18.8 307 303-621 52-416 (418)
19 cd03868 M14_CPD_I The first ca 100.0 5E-51 1.1E-55 441.4 28.2 248 46-296 1-372 (372)
20 cd03867 M14_CPZ Peptidase M14- 100.0 2.7E-50 5.8E-55 436.6 26.8 247 46-296 1-395 (395)
21 cd03870 M14_CPA Peptidase M14 100.0 3.3E-50 7.1E-55 419.5 26.1 257 356-623 2-298 (301)
22 cd03871 M14_CPB Peptidase M14 100.0 1.9E-50 4.1E-55 420.6 22.8 256 356-622 2-298 (300)
23 cd06247 M14_CPO Peptidase M14 100.0 6.4E-50 1.4E-54 415.7 25.0 256 357-622 1-297 (298)
24 cd06246 M14_CPB2 Peptidase M14 100.0 1.1E-49 2.3E-54 416.0 25.1 256 357-622 2-298 (300)
25 cd03859 M14_CPT Peptidase M14- 100.0 2.8E-49 6.1E-54 415.0 25.9 250 358-616 2-295 (295)
26 cd06248 M14_CPA_CPB_like Pepti 100.0 4.3E-49 9.2E-54 413.7 24.9 258 357-622 1-303 (304)
27 cd03872 M14_CPA6 Carboxypeptid 100.0 1.5E-48 3.3E-53 405.2 23.8 255 359-623 1-296 (300)
28 cd06226 M14_CPT_like Peptidase 100.0 1.9E-46 4.2E-51 388.8 21.0 235 377-619 1-292 (293)
29 cd03860 M14_CP_A-B_like The Pe 100.0 1.1E-45 2.5E-50 388.1 25.7 251 360-622 1-293 (294)
30 cd03858 M14_CP_N-E_like Carbox 100.0 1.8E-45 3.8E-50 399.9 27.8 247 46-296 1-374 (374)
31 smart00631 Zn_pept Zn_pept. 100.0 2.4E-44 5.1E-49 375.5 24.8 229 360-598 1-262 (277)
32 cd06905 Peptidase_M14-like_8 A 100.0 1.2E-43 2.6E-48 376.6 24.7 233 357-597 1-339 (360)
33 PF00246 Peptidase_M14: Zinc c 100.0 5.3E-44 1.1E-48 374.9 19.3 243 366-615 1-279 (279)
34 cd06227 Peptidase_M14-like_2 A 100.0 2.2E-43 4.8E-48 362.6 22.4 226 360-596 2-258 (272)
35 cd06228 Peptidase_M14-like_3 A 100.0 2.1E-40 4.5E-45 345.4 17.9 217 386-614 6-329 (332)
36 cd06229 M14_Endopeptidase_I Pe 100.0 2.6E-40 5.7E-45 340.2 16.1 214 389-615 1-254 (255)
37 cd06237 M14_Nna1_like_3 A bact 100.0 2.8E-36 6E-41 305.6 20.2 204 360-597 7-226 (244)
38 KOG2650|consensus 100.0 1.2E-35 2.5E-40 316.8 15.6 216 2-227 66-307 (418)
39 cd06234 M14_Nna1_like_1 A bact 100.0 6.1E-34 1.3E-38 290.2 19.9 215 358-599 8-240 (263)
40 cd03856 M14_Nna1_like Peptidas 100.0 2.3E-33 5.1E-38 288.6 18.4 208 360-599 10-243 (269)
41 cd06908 M14_AGBL4_like Peptida 100.0 4.7E-33 1E-37 283.0 19.5 209 370-600 1-231 (261)
42 cd03862 Peptidase_M14-like_7 A 100.0 2.6E-32 5.5E-37 280.2 17.7 187 391-598 8-242 (273)
43 cd06242 Peptidase_M14-like_1_5 100.0 1.1E-30 2.4E-35 268.7 18.3 154 360-540 2-156 (268)
44 PRK10602 murein peptide amidas 100.0 5.1E-31 1.1E-35 264.0 12.8 196 381-617 15-232 (237)
45 cd03871 M14_CPB Peptidase M14 100.0 1.5E-30 3.3E-35 271.4 16.7 174 41-227 1-189 (300)
46 cd06247 M14_CPO Peptidase M14 100.0 3.9E-30 8.4E-35 267.7 16.8 172 43-226 1-187 (298)
47 cd06235 M14_Nna1_like_2 Subgro 100.0 5.8E-30 1.2E-34 262.5 17.4 202 377-599 9-230 (258)
48 cd03872 M14_CPA6 Carboxypeptid 100.0 5E-30 1.1E-34 266.8 16.4 169 45-225 1-184 (300)
49 cd03870 M14_CPA Peptidase M14 100.0 7.3E-30 1.6E-34 266.7 17.2 165 41-217 1-179 (301)
50 cd06246 M14_CPB2 Peptidase M14 100.0 1.7E-29 3.7E-34 264.1 16.2 173 43-226 2-188 (300)
51 cd06238 Peptidase_M14-like_1_1 100.0 4.8E-29 1E-33 255.8 16.5 197 386-596 1-254 (271)
52 cd00596 Peptidase_M14_like The 100.0 2.3E-29 5E-34 250.1 13.5 183 417-615 1-195 (196)
53 cd06239 Peptidase_M14-like_1_2 100.0 9.7E-29 2.1E-33 247.3 16.2 136 373-540 2-137 (231)
54 cd06905 Peptidase_M14-like_8 A 100.0 2.5E-28 5.4E-33 259.7 18.6 119 43-164 1-120 (360)
55 cd06248 M14_CPA_CPB_like Pepti 100.0 3.8E-28 8.2E-33 255.3 16.9 168 43-219 1-182 (304)
56 cd06241 Peptidase_M14-like_1_4 100.0 2.7E-28 5.9E-33 250.8 15.3 157 368-538 1-162 (266)
57 cd06243 Peptidase_M14-like_1_6 100.0 1.2E-27 2.5E-32 240.6 18.1 132 386-539 1-133 (236)
58 cd03859 M14_CPT Peptidase M14- 100.0 1.8E-27 3.8E-32 250.1 17.2 167 44-217 2-186 (295)
59 cd06244 Peptidase_M14-like_1_7 99.9 2.4E-27 5.1E-32 239.3 17.0 134 386-539 1-171 (268)
60 cd06236 M14_AGBL5_like Peptida 99.9 3.3E-27 7.3E-32 243.2 17.4 150 380-547 15-189 (304)
61 cd06907 M14_AGBL2-3_like Pepti 99.9 7.3E-27 1.6E-31 235.7 19.4 149 378-546 11-166 (261)
62 cd06904 M14_MpaA_like Peptidas 99.9 8.6E-27 1.9E-31 226.7 12.2 154 417-598 1-164 (178)
63 cd06227 Peptidase_M14-like_2 A 99.9 1.2E-25 2.7E-30 231.3 15.0 160 46-217 2-172 (272)
64 smart00631 Zn_pept Zn_pept. 99.9 2.2E-25 4.7E-30 232.9 16.6 159 46-218 1-171 (277)
65 cd03860 M14_CP_A-B_like The Pe 99.9 3.2E-25 7E-30 233.2 17.1 168 46-226 1-182 (294)
66 cd03857 Peptidase_M14-like_1 P 99.9 4.5E-25 9.7E-30 222.9 15.0 129 386-537 1-131 (226)
67 cd06240 Peptidase_M14-like_1_3 99.9 2.8E-24 6.1E-29 219.6 16.7 148 382-539 1-180 (273)
68 cd06906 M14_Nna1 Peptidase M14 99.9 9.9E-24 2.2E-28 213.5 17.6 159 370-547 4-174 (278)
69 PF00246 Peptidase_M14: Zinc c 99.9 1.3E-23 2.8E-28 220.5 16.0 157 52-217 1-166 (279)
70 cd06226 M14_CPT_like Peptidase 99.9 2.3E-23 5E-28 216.5 13.5 151 63-219 1-174 (293)
71 cd06231 Peptidase_M14-like_4 A 99.9 1.2E-21 2.7E-26 197.6 17.3 124 381-539 15-141 (236)
72 cd06242 Peptidase_M14-like_1_5 99.9 5E-22 1.1E-26 204.7 13.8 115 46-167 2-122 (268)
73 cd06228 Peptidase_M14-like_3 A 99.9 3.1E-21 6.6E-26 201.9 12.6 136 72-217 6-178 (332)
74 cd06232 Peptidase_M14-like_5 P 99.8 6.9E-21 1.5E-25 185.7 11.5 140 362-539 3-145 (240)
75 cd06234 M14_Nna1_like_1 A bact 99.8 3.3E-20 7.2E-25 189.5 15.7 112 43-165 7-119 (263)
76 cd06237 M14_Nna1_like_3 A bact 99.8 1.7E-20 3.7E-25 190.5 12.7 107 46-165 7-114 (244)
77 cd06908 M14_AGBL4_like Peptida 99.8 3.8E-20 8.2E-25 188.6 11.5 107 56-167 1-113 (261)
78 cd06229 M14_Endopeptidase_I Pe 99.8 9.9E-20 2.2E-24 187.6 9.7 129 75-217 1-160 (255)
79 cd06239 Peptidase_M14-like_1_2 99.8 6.9E-19 1.5E-23 176.4 11.8 95 59-165 2-96 (231)
80 cd06241 Peptidase_M14-like_1_4 99.8 2.7E-18 5.9E-23 176.8 11.7 104 54-163 1-106 (266)
81 cd03856 M14_Nna1_like Peptidas 99.8 2.5E-18 5.4E-23 177.4 11.1 108 46-167 10-123 (269)
82 cd06243 Peptidase_M14-like_1_6 99.7 7.1E-18 1.5E-22 169.9 10.4 94 72-167 1-99 (236)
83 cd06240 Peptidase_M14-like_1_3 99.7 6.6E-18 1.4E-22 172.9 9.6 92 68-161 1-116 (273)
84 cd06235 M14_Nna1_like_2 Subgro 99.7 2.3E-17 4.9E-22 169.5 10.4 101 63-167 9-115 (258)
85 cd06244 Peptidase_M14-like_1_7 99.7 4.7E-17 1E-21 164.8 9.2 96 72-167 1-138 (268)
86 cd06236 M14_AGBL5_like Peptida 99.7 1.5E-16 3.2E-21 164.6 11.1 100 66-167 15-138 (304)
87 cd06907 M14_AGBL2-3_like Pepti 99.7 3.1E-16 6.7E-21 158.7 10.8 101 63-167 10-116 (261)
88 cd03862 Peptidase_M14-like_7 A 99.7 8.1E-16 1.8E-20 158.4 13.4 126 77-218 8-144 (273)
89 cd06250 M14_PaAOTO_like An unc 99.7 3.5E-15 7.5E-20 160.6 18.8 252 385-670 4-309 (359)
90 cd03857 Peptidase_M14-like_1 P 99.6 5.7E-16 1.2E-20 156.7 10.3 93 72-167 1-100 (226)
91 cd06238 Peptidase_M14-like_1_1 99.6 3.2E-16 6.9E-21 161.2 8.5 87 72-160 1-106 (271)
92 PRK10602 murein peptide amidas 99.6 8.8E-16 1.9E-20 154.3 8.0 124 67-220 15-150 (237)
93 cd06251 M14_ASTE_ASPA_like_1 A 99.6 1.3E-14 2.8E-19 152.3 14.9 224 395-669 9-238 (287)
94 KOG3641|consensus 99.6 7.8E-15 1.7E-19 156.7 12.1 166 355-545 374-550 (650)
95 cd06232 Peptidase_M14-like_5 P 99.5 1E-14 2.2E-19 142.8 7.4 86 48-161 3-88 (240)
96 TIGR02994 ectoine_eutE ectoine 99.5 8.6E-14 1.9E-18 147.5 14.7 217 414-670 47-275 (325)
97 cd06906 M14_Nna1 Peptidase M14 99.5 1E-13 2.2E-18 141.0 13.6 103 56-161 4-110 (278)
98 cd06253 M14_ASTE_ASPA_like_3 A 99.5 1.1E-13 2.3E-18 145.7 14.2 221 413-670 18-249 (298)
99 cd06254 M14_ASTE_ASPA_like_4 A 99.5 1.7E-13 3.7E-18 144.0 15.2 229 393-670 4-243 (288)
100 cd06252 M14_ASTE_ASPA_like_2 A 99.5 5.9E-13 1.3E-17 141.6 15.8 229 392-670 21-264 (316)
101 cd06255 M14_ASTE_ASPA_like_5 A 99.5 7.9E-13 1.7E-17 139.0 16.4 237 387-671 3-252 (293)
102 cd06233 Peptidase_M14-like_6 P 99.4 1.5E-12 3.2E-17 133.8 14.9 115 361-503 3-121 (283)
103 PF04952 AstE_AspA: Succinylgl 99.4 3.5E-13 7.7E-18 142.5 6.1 180 414-623 2-195 (292)
104 cd06231 Peptidase_M14-like_4 A 99.4 1.9E-12 4.2E-17 130.9 10.1 85 65-165 13-98 (236)
105 cd00596 Peptidase_M14_like The 99.4 1.1E-12 2.4E-17 130.3 7.8 105 103-210 1-195 (196)
106 cd06230 M14_ASTE_ASPA_like The 99.3 4.5E-12 9.8E-17 130.8 11.6 95 417-539 1-97 (252)
107 PF13715 DUF4480: Domain of un 99.3 1.8E-11 3.9E-16 105.0 11.7 83 627-710 2-85 (88)
108 PF13620 CarboxypepD_reg: Carb 99.3 2.3E-11 5.1E-16 102.8 9.0 76 627-702 2-82 (82)
109 COG3608 Predicted deacylase [G 99.3 1.7E-10 3.7E-15 119.6 16.9 174 413-621 47-233 (331)
110 COG2866 Predicted carboxypepti 99.2 2.2E-11 4.8E-16 131.1 8.4 116 380-525 120-237 (374)
111 cd06904 M14_MpaA_like Peptidas 99.2 2E-11 4.3E-16 118.9 6.9 93 103-217 1-98 (178)
112 PF10994 DUF2817: Protein of u 99.2 6.4E-10 1.4E-14 117.8 18.3 223 361-613 3-303 (341)
113 PF13620 CarboxypepD_reg: Carb 99.2 5.7E-11 1.2E-15 100.4 7.8 76 222-297 2-82 (82)
114 PF13715 DUF4480: Domain of un 99.1 3.3E-10 7.1E-15 97.1 9.6 77 222-299 2-79 (88)
115 PRK02259 aspartoacylase; Provi 99.0 1.1E-09 2.5E-14 114.8 11.8 100 415-539 3-108 (288)
116 cd06256 M14_ASTE_ASPA_like_6 A 99.0 9.7E-10 2.1E-14 116.6 11.0 98 415-539 35-132 (327)
117 cd06909 M14_ASPA Aspartoacylas 99.0 1.7E-09 3.8E-14 112.4 11.2 100 415-539 1-106 (282)
118 cd03855 M14_ASTE Peptidase M14 99.0 6.5E-09 1.4E-13 110.7 14.5 99 413-537 41-149 (322)
119 PRK05324 succinylglutamate des 99.0 3.7E-09 8.1E-14 112.6 11.7 99 413-537 46-153 (329)
120 cd06910 M14_ASTE_ASPA_like_7 A 98.9 3.4E-09 7.3E-14 110.5 10.2 99 415-539 1-105 (272)
121 TIGR03242 arg_catab_astE succi 98.9 9.5E-09 2.1E-13 109.3 12.4 99 413-537 40-148 (319)
122 COG2866 Predicted carboxypepti 98.6 4.4E-08 9.5E-13 105.8 7.0 86 66-162 120-207 (374)
123 cd06233 Peptidase_M14-like_6 P 98.4 1.4E-06 3.1E-11 90.0 10.7 103 47-165 3-109 (283)
124 cd06250 M14_PaAOTO_like An unc 98.4 9.3E-07 2E-11 95.6 8.9 76 72-161 5-82 (359)
125 KOG3641|consensus 98.4 6.3E-07 1.4E-11 97.0 6.9 111 41-160 374-486 (650)
126 COG2988 Succinylglutamate desu 98.3 2.3E-06 5E-11 85.9 8.8 180 416-624 45-239 (324)
127 cd06255 M14_ASTE_ASPA_like_5 A 97.9 2.1E-05 4.5E-10 83.0 8.0 67 80-164 12-78 (293)
128 cd06251 M14_ASTE_ASPA_like_1 A 97.9 1.5E-05 3.3E-10 83.8 6.8 55 100-164 20-74 (287)
129 cd06230 M14_ASTE_ASPA_like The 97.8 2.1E-05 4.5E-10 81.3 5.9 56 103-167 1-59 (252)
130 cd06254 M14_ASTE_ASPA_like_4 A 97.8 3.2E-05 6.9E-10 81.5 6.6 65 80-162 5-69 (288)
131 cd06253 M14_ASTE_ASPA_like_3 A 97.8 5.1E-05 1.1E-09 80.2 7.4 60 100-163 19-78 (298)
132 PF08400 phage_tail_N: Prophag 97.8 9.6E-05 2.1E-09 67.1 7.8 66 222-287 5-80 (134)
133 TIGR02994 ectoine_eutE ectoine 97.7 9.2E-05 2E-09 79.0 7.2 55 100-164 47-101 (325)
134 PF08400 phage_tail_N: Prophag 97.6 0.00035 7.5E-09 63.5 8.8 67 626-692 4-80 (134)
135 cd06252 M14_ASTE_ASPA_like_2 A 97.5 0.00018 4E-09 76.7 7.2 67 79-164 22-88 (316)
136 PF04952 AstE_AspA: Succinylgl 97.4 0.00022 4.7E-09 75.5 6.5 55 100-164 2-56 (292)
137 PF08308 PEGA: PEGA domain; I 97.4 0.00072 1.6E-08 55.2 7.5 61 639-704 10-70 (71)
138 PF08308 PEGA: PEGA domain; I 97.2 0.00086 1.9E-08 54.7 6.3 59 235-298 11-69 (71)
139 PF09892 DUF2119: Uncharacteri 97.0 0.0033 7.1E-08 59.9 8.4 82 415-539 7-88 (193)
140 PRK05324 succinylglutamate des 96.9 0.0017 3.7E-08 69.5 6.9 61 98-167 45-108 (329)
141 cd03855 M14_ASTE Peptidase M14 96.9 0.0021 4.6E-08 68.7 7.6 61 98-167 40-103 (322)
142 COG3608 Predicted deacylase [G 96.9 0.0023 4.9E-08 67.2 7.5 62 99-170 47-114 (331)
143 TIGR03242 arg_catab_astE succi 96.9 0.0022 4.9E-08 68.4 7.1 61 98-167 39-102 (319)
144 cd00421 intradiol_dioxygenase 96.8 0.005 1.1E-07 57.9 8.2 75 626-701 13-117 (146)
145 PRK02259 aspartoacylase; Provi 96.8 0.0015 3.2E-08 68.8 4.9 58 100-167 2-62 (288)
146 PRK15036 hydroxyisourate hydro 96.7 0.0038 8.2E-08 57.7 6.1 58 625-682 27-97 (137)
147 COG4073 Uncharacterized protei 96.7 0.0059 1.3E-07 56.6 7.1 132 418-602 18-152 (198)
148 PRK15036 hydroxyisourate hydro 96.6 0.0038 8.2E-08 57.7 5.8 57 221-277 28-97 (137)
149 cd06909 M14_ASPA Aspartoacylas 96.5 0.0028 6.1E-08 66.3 5.0 57 101-167 1-60 (282)
150 PF07210 DUF1416: Protein of u 96.5 0.023 5E-07 46.7 8.8 70 222-294 10-83 (85)
151 PF14686 fn3_3: Polysaccharide 96.3 0.025 5.3E-07 48.9 8.4 69 626-695 4-90 (95)
152 cd00421 intradiol_dioxygenase 96.2 0.013 2.9E-07 55.0 7.2 53 222-274 14-95 (146)
153 PF07210 DUF1416: Protein of u 96.2 0.043 9.4E-07 45.1 9.0 71 626-699 9-83 (85)
154 cd06256 M14_ASTE_ASPA_like_6 A 96.2 0.0081 1.8E-07 64.2 6.1 52 101-163 35-86 (327)
155 PF05738 Cna_B: Cna protein B- 95.8 0.043 9.3E-07 44.4 7.5 58 639-696 1-68 (70)
156 cd03458 Catechol_intradiol_dio 95.8 0.029 6.3E-07 57.3 7.9 67 626-693 106-216 (256)
157 cd03462 1,2-CCD chlorocatechol 95.7 0.036 7.8E-07 56.3 7.9 66 626-692 101-210 (247)
158 TIGR02465 chlorocat_1_2 chloro 95.7 0.04 8.7E-07 56.0 8.1 66 626-692 100-209 (246)
159 cd06910 M14_ASTE_ASPA_like_7 A 95.6 0.012 2.6E-07 61.5 4.5 48 101-160 1-48 (272)
160 PF14686 fn3_3: Polysaccharide 95.5 0.038 8.2E-07 47.8 6.3 68 222-289 5-89 (95)
161 TIGR02439 catechol_proteo cate 95.5 0.049 1.1E-06 56.5 8.1 67 626-693 130-240 (285)
162 PF00775 Dioxygenase_C: Dioxyg 95.3 0.098 2.1E-06 51.0 9.2 64 626-690 31-140 (183)
163 cd03459 3,4-PCD Protocatechuat 95.3 0.065 1.4E-06 51.0 7.8 65 626-691 17-118 (158)
164 cd03460 1,2-CTD Catechol 1,2 d 95.2 0.063 1.4E-06 55.6 8.0 67 626-693 126-236 (282)
165 cd03463 3,4-PCD_alpha Protocat 95.1 0.059 1.3E-06 52.6 6.8 64 626-690 38-137 (185)
166 PF02244 Propep_M14: Carboxype 94.9 0.013 2.9E-07 48.0 1.7 36 1-36 36-72 (74)
167 cd03458 Catechol_intradiol_dio 94.9 0.08 1.7E-06 54.2 7.6 45 222-266 107-170 (256)
168 cd03461 1,2-HQD Hydroxyquinol 94.9 0.072 1.6E-06 55.1 7.2 66 626-692 122-231 (277)
169 TIGR02438 catachol_actin catec 94.7 0.11 2.3E-06 53.9 7.9 66 626-692 134-243 (281)
170 PF02369 Big_1: Bacterial Ig-l 94.7 0.21 4.5E-06 43.7 8.6 60 626-685 26-97 (100)
171 TIGR02423 protocat_alph protoc 94.6 0.11 2.5E-06 50.9 7.7 60 626-685 41-137 (193)
172 TIGR02465 chlorocat_1_2 chloro 94.5 0.12 2.6E-06 52.6 7.6 45 222-266 101-164 (246)
173 TIGR02422 protocat_beta protoc 94.4 0.17 3.6E-06 50.8 8.3 60 626-685 62-160 (220)
174 PF05738 Cna_B: Cna protein B- 94.4 0.13 2.8E-06 41.5 6.3 57 234-290 1-67 (70)
175 cd03462 1,2-CCD chlorocatechol 94.4 0.13 2.8E-06 52.4 7.4 44 222-265 102-164 (247)
176 PF09430 DUF2012: Protein of u 94.3 0.16 3.4E-06 46.3 7.2 51 639-690 7-61 (123)
177 cd03464 3,4-PCD_beta Protocate 94.2 0.19 4E-06 50.4 8.1 64 626-690 67-169 (220)
178 TIGR02439 catechol_proteo cate 94.2 0.15 3.2E-06 53.1 7.5 45 222-266 131-194 (285)
179 cd03463 3,4-PCD_alpha Protocat 94.1 0.14 3E-06 50.0 6.9 45 222-266 39-106 (185)
180 PF00775 Dioxygenase_C: Dioxyg 94.0 0.14 3E-06 50.0 6.7 46 222-267 32-98 (183)
181 cd03459 3,4-PCD Protocatechuat 94.0 0.18 3.9E-06 48.0 7.2 45 222-266 18-86 (158)
182 cd03460 1,2-CTD Catechol 1,2 d 93.9 0.17 3.6E-06 52.6 7.3 45 222-266 127-190 (282)
183 cd03461 1,2-HQD Hydroxyquinol 93.7 0.14 3.1E-06 53.0 6.5 45 222-266 123-186 (277)
184 PF10994 DUF2817: Protein of u 93.7 0.36 7.9E-06 51.8 9.8 105 47-167 3-116 (341)
185 smart00634 BID_1 Bacterial Ig- 93.6 0.39 8.4E-06 41.2 8.2 60 626-685 21-91 (92)
186 TIGR02438 catachol_actin catec 93.5 0.2 4.4E-06 51.8 7.2 45 222-266 135-198 (281)
187 TIGR02423 protocat_alph protoc 93.2 0.17 3.7E-06 49.8 5.8 46 222-267 42-111 (193)
188 KOG1948|consensus 93.2 0.25 5.3E-06 57.3 7.7 68 624-693 315-385 (1165)
189 COG3485 PcaH Protocatechuate 3 92.7 0.18 3.8E-06 50.6 5.2 47 221-267 74-143 (226)
190 PF02369 Big_1: Bacterial Ig-l 92.2 0.35 7.6E-06 42.3 5.9 57 222-278 27-95 (100)
191 cd03464 3,4-PCD_beta Protocate 92.0 0.41 8.9E-06 48.0 6.7 45 222-266 68-136 (220)
192 TIGR02422 protocat_beta protoc 91.2 0.56 1.2E-05 47.0 6.8 46 222-267 63-132 (220)
193 smart00634 BID_1 Bacterial Ig- 91.2 0.85 1.8E-05 39.1 7.1 57 222-278 22-89 (92)
194 COG3485 PcaH Protocatechuate 3 91.0 0.42 9.1E-06 48.0 5.7 58 624-681 72-166 (226)
195 PF12866 DUF3823: Protein of u 90.0 1.2 2.7E-05 44.8 8.1 75 221-298 23-113 (222)
196 PF12985 DUF3869: Domain of un 89.7 1.6 3.6E-05 37.9 7.3 69 625-705 22-97 (104)
197 PF12985 DUF3869: Domain of un 89.4 0.95 2.1E-05 39.3 5.7 66 221-298 23-95 (104)
198 TIGR02962 hdxy_isourate hydrox 89.2 0.75 1.6E-05 41.0 5.2 56 222-277 3-72 (112)
199 PF06488 L_lac_phage_MSP: Lact 89.2 0.55 1.2E-05 45.3 4.5 157 122-286 111-299 (301)
200 PF09430 DUF2012: Protein of u 88.8 1.2 2.5E-05 40.6 6.3 51 234-285 7-61 (123)
201 KOG1948|consensus 88.6 0.82 1.8E-05 53.2 6.2 57 221-278 317-376 (1165)
202 COG2988 Succinylglutamate desu 88.6 0.45 9.6E-06 48.8 3.7 92 58-167 8-104 (324)
203 PF10670 DUF4198: Domain of un 88.2 1.2 2.5E-05 44.5 6.6 51 626-677 152-212 (215)
204 PF10794 DUF2606: Protein of u 88.0 2.1 4.7E-05 37.7 7.0 52 222-273 44-108 (131)
205 COG5266 CbiK ABC-type Co2+ tra 87.7 1.4 3E-05 44.6 6.4 51 222-273 174-242 (264)
206 TIGR02962 hdxy_isourate hydrox 87.1 1.3 2.9E-05 39.5 5.4 55 627-681 3-71 (112)
207 PF12866 DUF3823: Protein of u 86.0 3.5 7.6E-05 41.5 8.4 77 624-703 21-113 (222)
208 COG5266 CbiK ABC-type Co2+ tra 85.5 2.3 5E-05 43.0 6.7 52 626-678 173-242 (264)
209 PF06488 L_lac_phage_MSP: Lact 85.5 1.2 2.7E-05 43.0 4.6 38 653-691 260-299 (301)
210 PF10794 DUF2606: Protein of u 83.6 9.9 0.00022 33.7 8.9 56 626-681 43-111 (131)
211 PF10670 DUF4198: Domain of un 82.7 2.7 5.8E-05 41.8 6.1 50 222-272 153-212 (215)
212 PF00576 Transthyretin: HIUase 81.8 1.6 3.4E-05 39.0 3.5 57 222-278 3-74 (112)
213 PF09892 DUF2119: Uncharacteri 80.1 1.9 4.2E-05 41.5 3.6 48 101-161 7-54 (193)
214 cd05822 TLP_HIUase HIUase (5-h 78.7 4.6 9.9E-05 36.0 5.3 55 627-681 3-71 (112)
215 PF00576 Transthyretin: HIUase 78.1 2.6 5.6E-05 37.6 3.6 54 626-679 2-70 (112)
216 cd05822 TLP_HIUase HIUase (5-h 77.1 4.9 0.00011 35.9 5.1 56 222-277 3-72 (112)
217 COG1470 Predicted membrane pro 75.9 9.7 0.00021 41.9 7.8 74 222-298 189-263 (513)
218 PF11974 MG1: Alpha-2-macroglo 72.5 14 0.00031 32.0 6.8 51 625-675 13-69 (97)
219 cd03457 intradiol_dioxygenase_ 72.4 15 0.00033 36.0 7.7 46 626-671 28-100 (188)
220 cd05821 TLP_Transthyretin Tran 71.7 7.5 0.00016 35.1 4.9 56 221-276 8-77 (121)
221 cd05469 Transthyretin_like Tra 71.0 8.5 0.00018 34.3 5.0 55 222-276 3-71 (113)
222 COG4073 Uncharacterized protei 70.7 2.8 6.1E-05 39.4 2.0 42 104-158 18-59 (198)
223 COG1470 Predicted membrane pro 70.2 17 0.00038 40.0 8.1 75 627-704 189-264 (513)
224 smart00095 TR_THY Transthyreti 68.9 9.8 0.00021 34.4 5.0 56 221-276 5-74 (121)
225 PF07495 Y_Y_Y: Y_Y_Y domain; 67.7 7.5 0.00016 30.6 3.7 19 660-678 30-49 (66)
226 PF11008 DUF2846: Protein of u 65.5 27 0.00059 31.3 7.3 59 640-701 41-103 (117)
227 smart00095 TR_THY Transthyreti 65.2 13 0.00029 33.5 5.1 56 626-681 5-74 (121)
228 COG2351 Transthyretin-like pro 65.2 18 0.0004 32.2 5.8 55 627-681 11-79 (124)
229 TIGR03000 plancto_dom_1 Planct 64.4 13 0.00028 30.4 4.4 58 235-294 11-75 (75)
230 cd05469 Transthyretin_like Tra 64.2 14 0.00031 32.9 5.1 55 627-681 3-71 (113)
231 cd03457 intradiol_dioxygenase_ 62.7 12 0.00027 36.6 4.9 20 222-241 29-49 (188)
232 COG2351 Transthyretin-like pro 62.4 20 0.00043 32.0 5.5 56 222-277 11-80 (124)
233 PF11974 MG1: Alpha-2-macroglo 61.6 23 0.00049 30.7 5.8 38 222-259 15-58 (97)
234 cd05821 TLP_Transthyretin Tran 61.2 16 0.00034 33.1 4.8 56 626-681 8-77 (121)
235 PF11008 DUF2846: Protein of u 61.1 35 0.00076 30.5 7.2 56 234-292 40-99 (117)
236 PF03785 Peptidase_C25_C: Pept 60.2 46 0.00099 27.7 6.9 48 640-689 26-81 (81)
237 PF07495 Y_Y_Y: Y_Y_Y domain; 59.0 19 0.00041 28.2 4.6 33 241-273 14-49 (66)
238 PF14347 DUF4399: Domain of un 56.7 37 0.0008 28.8 6.1 51 221-274 21-73 (87)
239 PF14347 DUF4399: Domain of un 55.2 45 0.00097 28.3 6.3 56 625-683 20-77 (87)
240 PF01190 Pollen_Ole_e_I: Polle 53.7 28 0.00061 30.0 5.1 32 231-262 18-57 (97)
241 PF03785 Peptidase_C25_C: Pept 52.2 44 0.00096 27.8 5.6 48 235-284 26-81 (81)
242 KOG3006|consensus 51.8 41 0.00089 30.0 5.6 51 626-676 22-86 (132)
243 KOG3006|consensus 50.0 40 0.00087 30.1 5.3 53 222-274 23-89 (132)
244 PF07523 Big_3: Bacterial Ig-l 49.6 29 0.00063 27.5 4.2 47 626-685 18-64 (67)
245 TIGR03000 plancto_dom_1 Planct 49.3 59 0.0013 26.7 5.8 57 640-699 11-75 (75)
246 PF07523 Big_3: Bacterial Ig-l 47.0 18 0.0004 28.7 2.7 41 221-273 18-58 (67)
247 PF01190 Pollen_Ole_e_I: Polle 45.8 29 0.00062 29.9 3.9 32 636-667 18-57 (97)
248 PF02244 Propep_M14: Carboxype 45.6 3 6.6E-05 33.9 -2.2 47 302-348 21-70 (74)
249 PF01835 A2M_N: MG2 domain; I 39.6 1.5E+02 0.0034 25.1 7.6 51 627-677 19-86 (99)
250 PF13115 YtkA: YtkA-like 35.2 1.2E+02 0.0027 25.0 6.1 18 632-649 28-45 (86)
251 PF13860 FlgD_ig: FlgD Ig-like 31.2 1.3E+02 0.0029 24.8 5.6 43 626-677 26-78 (81)
252 PF05688 DUF824: Salmonella re 30.3 73 0.0016 23.7 3.3 21 222-242 17-37 (47)
253 PF13115 YtkA: YtkA-like 29.3 1.7E+02 0.0036 24.2 6.0 22 222-244 24-45 (86)
254 PF07550 DUF1533: Protein of u 28.6 41 0.00088 26.7 1.9 18 261-278 45-62 (65)
255 KOG4659|consensus 27.9 1.6E+02 0.0034 37.1 7.1 82 621-703 48-132 (1899)
256 PF13860 FlgD_ig: FlgD Ig-like 26.8 1.3E+02 0.0027 24.9 4.7 47 222-271 27-77 (81)
257 PF14344 DUF4397: Domain of un 26.7 2.5E+02 0.0054 24.9 7.1 57 235-292 14-77 (122)
258 PF14054 DUF4249: Domain of un 26.5 2.8E+02 0.0061 28.8 8.5 54 638-692 59-123 (298)
259 COG3422 Uncharacterized conser 26.3 77 0.0017 24.6 2.9 31 248-278 7-37 (59)
260 PF07550 DUF1533: Protein of u 25.5 66 0.0014 25.5 2.6 20 666-685 45-64 (65)
261 smart00557 IG_FLMN Filamin-typ 25.5 1.9E+02 0.0041 24.5 5.7 43 627-679 34-79 (93)
262 PF05751 FixH: FixH; InterPro 24.6 2.1E+02 0.0046 26.3 6.4 48 222-269 71-130 (146)
263 PHA00691 hypothetical protein 24.2 94 0.002 23.8 3.0 31 655-685 9-39 (68)
264 PF01835 A2M_N: MG2 domain; I 24.2 2.8E+02 0.0062 23.4 6.7 51 222-272 19-86 (99)
265 PF05751 FixH: FixH; InterPro 24.2 2.9E+02 0.0063 25.3 7.2 50 625-674 69-130 (146)
266 PHA00691 hypothetical protein 23.9 86 0.0019 24.0 2.7 22 251-272 10-31 (68)
267 PF07411 DUF1508: Domain of un 23.7 56 0.0012 24.4 1.8 28 251-278 1-28 (49)
268 PF13953 PapC_C: PapC C-termin 23.0 1.4E+02 0.003 23.8 4.1 37 630-666 2-40 (68)
269 PF10577 UPF0560: Uncharacteri 21.2 2.2E+02 0.0047 34.1 6.6 58 627-684 3-67 (807)
No 1
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=2.3e-81 Score=670.04 Aligned_cols=337 Identities=46% Similarity=0.823 Sum_probs=314.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|| ++++.+.++||.|+++|+||||||+|++++++|+
T Consensus 5 ~~h~y~ei~~~l~~l~~~~P~i~~l~~IG~S~eGR~I~~l~Is---~~~~~~~~~kp~v~~~g~iHg~E~ig~~~~l~li 81 (375)
T cd03863 5 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEIS---DNPGIHEPGEPEFKYIGNMHGNEVVGRELLLNLI 81 (375)
T ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEEcccCCccceEEEEEEe---cCCCcccCCCCeEEEEccccCCcHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999 6666666789999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHH
Q psy11074 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQA 518 (710)
Q Consensus 439 ~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~a 518 (710)
++||++|++|+++++||++++|+|||++|||||+++++++|. |+++|.|++|||||||||+.|.. .+.++||||+|
T Consensus 82 ~~L~~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~---~~~~R~n~~GVDLNRNfp~~~~~-~~~~~EpEt~A 157 (375)
T cd03863 82 EYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRG---GTVGRNNSNNYDLNRNFPDQFFQ-VTDPPQPETLA 157 (375)
T ss_pred HHHHHhccCCHHHHHHHhCCEEEEEeccCCchHHheecCCcc---cccccccCCCcccccCCcccccc-CCCCCcHHHHH
Confidence 999999999999999999999999999999999999999999 99999999999999999999987 45578999999
Q ss_pred HHHHHHhCCceEEEEecCCcccccccc----------------------------cCCCCCCCCccc-----cCCccccc
Q psy11074 519 IMNFIYSNPFVLSGNLHGGAVARDYAS----------------------------RNPMMAPGHACG-----FDFKDGIT 565 (710)
Q Consensus 519 l~~~~~~~~~~~~~~lH~~~~~~~y~~----------------------------~~~~~~~~~~~~-----~~~~~g~~ 565 (710)
|++|+++++|+++++||||++...|+. +++.|..+.+|. +.|..|++
T Consensus 158 v~~~~~~~~f~l~~~lHsg~~~~~yPy~~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~ 237 (375)
T cd03863 158 VMSWLKSYPFVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGIT 237 (375)
T ss_pred HHHHHhhCCceEEEEecCCCEEEEccCcCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCcc
Confidence 999999999999999999988433321 223455566675 24788999
Q ss_pred ccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcC-CCCCCCCeEE
Q psy11074 566 NGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDT-YGNPLPSAII 644 (710)
Q Consensus 566 ~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~-~g~pi~~A~v 644 (710)
||+.||+++|||+||+|..++|+++|+||+|||||++++|+.+|++||++|+.+|++++.||+|+|+|. +|+||++|+|
T Consensus 238 nga~wY~~~GgmqDw~y~~~~~~e~T~El~~~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~~g~pl~~AtV 317 (375)
T cd03863 238 NGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKEEELPKYWEQNRRSLLQFMKQVHRGVRGFVLDATDGRGILNATI 317 (375)
T ss_pred CCceEEecCCChhhhhhhhcCeEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCCCCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 7999999999
Q ss_pred EEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEec
Q psy11074 645 TVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGK 703 (710)
Q Consensus 645 ~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~ 703 (710)
.|.|++++++||.+|+|++.|+||+|+|+|++.||++++++ |.|..++.+.++|.|++
T Consensus 318 ~V~g~~~~~~Td~~G~f~~~l~pG~ytl~vs~~GY~~~~~~-v~V~~~~~~~~~~~L~~ 375 (375)
T cd03863 318 SVADINHPVTTYKDGDYWRLLVPGTYKVTASARGYDPVTKT-VEVDSKGAVQVNFTLSR 375 (375)
T ss_pred EEecCcCceEECCCccEEEccCCeeEEEEEEEcCcccEEEE-EEEcCCCcEEEEEEecC
Confidence 99999999999999999999999999999999999999998 99999999999999974
No 2
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=1.7e-81 Score=669.67 Aligned_cols=339 Identities=39% Similarity=0.726 Sum_probs=312.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
+||+|+||.++|++|+++||+++++++||+|+|||+|++++|| ++++.+..+||.|+++|+||||||+|++++++|+
T Consensus 4 ~yh~y~em~~~L~~la~~yP~i~~l~sIGkS~EGR~L~~l~Is---~~~~~~~~~kP~v~~~g~iHgrE~ig~~~~l~li 80 (405)
T cd03869 4 KHHNYKDMRQLMKVVNEMCPNITRIYNIGKSYQGLKLYAMEIS---DNPGEHELGEPEFRYVAGMHGNEVLGRELLLLLM 80 (405)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEEeEECcCCceEEEEEEe---cCCccccCCCCeEEEEcccCCCcHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999 6777776789999999999999999999999999
Q ss_pred HHHHHhc-CCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCC----CCcc-------
Q psy11074 439 QYLVLKD-GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD----QFEY------- 506 (710)
Q Consensus 439 ~~l~~~y-~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~----~~~~------- 506 (710)
++||++| ..|+++++||++++|+|||++|||||++++++++..+.|+++|.||+|||||||||. .|+.
T Consensus 81 ~~L~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R~na~GVDLNRNFp~~~~~~W~~~~~~~~~ 160 (405)
T cd03869 81 QFLCQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGRWTEEGIDINHNFPDLNTILWEAEDKKKVP 160 (405)
T ss_pred HHHHHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCccCCCCccccCCCccccccccccccccccc
Confidence 9999999 579999999999999999999999999998876544459999999999999999995 6753
Q ss_pred ---------------cCCCCChHHHHHHHHHHHhCCceEEEEecCCcc------------------------------cc
Q psy11074 507 ---------------EAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAV------------------------------AR 541 (710)
Q Consensus 507 ---------------~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~------------------------------~~ 541 (710)
+..+++||||+||++|+++++|++++++|+|.. +.
T Consensus 161 ~~~~~~~~Pc~~~Y~G~~~~sEPET~Av~~~i~~~~FvLSanlHgG~lv~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~ 240 (405)
T cd03869 161 RKVPNHHIPIPEWYLSENATVAPETRAVIAWMEKIPFVLGANLQGGELVVSYPYDMTRTPWATQEATPTPDDAVFRWLAT 240 (405)
T ss_pred ccccccCCCCccccCCCCCCCcHHHHHHHHHHHhCCceEEEEecCccEEEEcCcccccCCccccCCCCCCCHHHHHHHHH
Confidence 123579999999999999999999999999887 34
Q ss_pred cccccCCCCCCCC--ccc---cCCcccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhh
Q psy11074 542 DYASRNPMMAPGH--ACG---FDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESL 616 (710)
Q Consensus 542 ~y~~~~~~~~~~~--~~~---~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~l 616 (710)
.|+..|+.|..+. +|. ..|..|++||+.||++.|||+||.|.+.+|+++|+||+|||||++++|+.+|++||++|
T Consensus 241 ~Ya~~h~~M~~~~~~~c~~~~~~~~~GitNGa~Wy~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~al 320 (405)
T cd03869 241 SYASTHLLMTDASRRVCHTEDFQKEDGIINGASWHTVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESL 320 (405)
T ss_pred HHHHhCHHhhcCCCCCCCCcccccCCCceeCCeeccCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHH
Confidence 4555667777653 575 24589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCC-CcE
Q psy11074 617 IKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDT-ESV 695 (710)
Q Consensus 617 l~~i~q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~-~~~ 695 (710)
|.+|+++|.||+|+|+|.+|.||++|+|.|.|.++.++|.++|+|||+|+||+|+|+|++.||.+++++ ++|..+ ..+
T Consensus 321 l~~~~~vh~GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywRll~pG~y~v~~~a~gy~~~~~~-~~v~~~~~~~ 399 (405)
T cd03869 321 LVFMEQVHRGIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWRLLNPGEYRVTAHAEGYTSSTKN-CEVGYEMGPT 399 (405)
T ss_pred HHHHHHHhcCceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEEecCCceEEEEEEecCCCcccEE-EEEcCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999876 677
Q ss_pred EEEEEE
Q psy11074 696 RLDFML 701 (710)
Q Consensus 696 ~~~~~L 701 (710)
.+||.|
T Consensus 400 ~~~f~l 405 (405)
T cd03869 400 QCNFTL 405 (405)
T ss_pred eeccCC
Confidence 888875
No 3
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=3.5e-80 Score=660.18 Aligned_cols=340 Identities=48% Similarity=0.830 Sum_probs=312.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|| ++++.+.++||.|+++|+||||||+|++++++++
T Consensus 4 ~Yh~y~e~~~~L~~l~~~~p~i~~l~~IG~S~eGR~I~~l~Is---~~~~~~~~~kP~v~i~g~iHg~E~ig~~~~l~l~ 80 (402)
T cd03865 4 EYHRYPELREALVSVWLQCPSISRIYTVGRSFEGRELLVIEMS---DNPGEHEPGEPEFKYIGNMHGNEAVGRELLIYLA 80 (402)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEecccccCCCeEEEEEee---cCCCCCCCCCCEEEEECCcCCCcHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999 6777777789999999999999999999999999
Q ss_pred HHHHHhcC-CCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc--------cC-
Q psy11074 439 QYLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY--------EA- 508 (710)
Q Consensus 439 ~~l~~~y~-~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~--------~~- 508 (710)
++||.+|. .|+++++||++++|+|||++||||++++.+..+..+.|+++|.||+|||||||||..+.. ++
T Consensus 81 ~~L~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~ 160 (402)
T cd03865 81 QYLCNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNAQGIDLNRNFPDLDRIVYVNEREGGPN 160 (402)
T ss_pred HHHHHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhcccccCcccCCCCCcccchhhhhhccCCCc
Confidence 99999995 589999999999999999999999998866443334499999999999999999975321 11
Q ss_pred -------------CCCChHHHHHHHHHHHhCCceEEEEecCCcc-----------------------------ccccccc
Q psy11074 509 -------------KKVYEPETQAIMNFIYSNPFVLSGNLHGGAV-----------------------------ARDYASR 546 (710)
Q Consensus 509 -------------~~~sepEt~al~~~~~~~~~~~~~~lH~~~~-----------------------------~~~y~~~ 546 (710)
....||||+|+|+|+++++|+++++||||++ +..|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~pEt~Avm~w~~~~~FvlsanlHgG~lva~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~ 240 (402)
T cd03865 161 NHLLKNMKKAVDENTKLAPETKAVIHWIMDIPFVLSANLHGGDLVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSL 240 (402)
T ss_pred cccccccccccccccCCChHHHHHHHHHHhCCcEEEEEccCccEEEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhh
Confidence 1246999999999999999999999999988 4557777
Q ss_pred CCCCCCC--Cccc-----cCCcccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhh
Q psy11074 547 NPMMAPG--HACG-----FDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKL 619 (710)
Q Consensus 547 ~~~~~~~--~~~~-----~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~ 619 (710)
|+.|+.+ .+|. +.|..|++||+.||++.|||+||.|.+.+|+++|+||+|||||++++|+.+|++||++||.+
T Consensus 241 h~~m~~~~~~~c~~~~~~~~f~~GitNGa~Wy~~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~ 320 (402)
T cd03865 241 NPAMSDPNRPPCRKNDDDSSFVDGTTNGGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNY 320 (402)
T ss_pred CHHhhcCCCCCCCCCCccccCCCCeecCceecccCCcccchhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888764 3565 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEE
Q psy11074 620 IENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDF 699 (710)
Q Consensus 620 i~q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 699 (710)
|+|++.||+|+|+|.+|.||++|+|+|.+.++.++|+.+|+|++.|+||+|+|+|++.||+++++. |+|..++.+.+||
T Consensus 321 ~~q~~~gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~~~~~-V~V~~~~~~~vdf 399 (402)
T cd03865 321 IEQVHRGVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWRLLAPGNYKLTASAPGYLAVVKK-VAVPYSPAVRVDF 399 (402)
T ss_pred HHHhccceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEECCCCEEEEEEEEecCcccEEEE-EEEcCCCcEEEeE
Confidence 999999999999999999999999999999999999999999989999999999999999999988 9999999999999
Q ss_pred EEe
Q psy11074 700 MLG 702 (710)
Q Consensus 700 ~L~ 702 (710)
.|+
T Consensus 400 ~Le 402 (402)
T cd03865 400 ELE 402 (402)
T ss_pred EeC
Confidence 985
No 4
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=9.5e-80 Score=660.23 Aligned_cols=339 Identities=44% Similarity=0.754 Sum_probs=314.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||+|+||.++|++|+++||+++++.+||+|++||+|++++|+ ++++.+.++||+|+++|+|||+||+|++++++|++
T Consensus 1 ~h~y~em~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~is---~~~~~~~~~kp~v~~~g~iHg~E~ig~e~ll~l~~ 77 (392)
T cd03864 1 HHRYDDLVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEFS---DNPGIHEPLEPEFKYVGNMHGNEVLGRELLIQLSE 77 (392)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEec---CCCccccCCCCEEEEEcccCCCcHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999 66776677899999999999999999999999999
Q ss_pred HHHHhcC-CCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc--------cC--
Q psy11074 440 YLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY--------EA-- 508 (710)
Q Consensus 440 ~l~~~y~-~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~--------~~-- 508 (710)
+||++|. .++++++||++++|+|||++||||+++++++++....|..+|.|++|||||||||..|.. +.
T Consensus 78 ~L~~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~ 157 (392)
T cd03864 78 FLCEEYRNGNERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNANGVDLNRNFPDLNTLMYYNEKYGGPNH 157 (392)
T ss_pred HHHHhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCccccccccccCcccccCCCcccccchhhhccCCccc
Confidence 9999995 589999999999999999999999999988766655566789999999999999986421 11
Q ss_pred --------CCCChHHHHHHHHHHHhCCceEEEEecCCcc----------------------------------ccccccc
Q psy11074 509 --------KKVYEPETQAIMNFIYSNPFVLSGNLHGGAV----------------------------------ARDYASR 546 (710)
Q Consensus 509 --------~~~sepEt~al~~~~~~~~~~~~~~lH~~~~----------------------------------~~~y~~~ 546 (710)
.+++||||+||++|+++++|++++|+|||+. +..|+..
T Consensus 158 ~~P~~~~~~~~~epET~Av~~~~~~~~fvls~nlHgG~~v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~ 237 (392)
T cd03864 158 HLPLPDNWKSQVEPETLAVIQWMQNYNFVLSANLHGGAVVANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYA 237 (392)
T ss_pred cCCCccccccccCHHHHHHHHHHHhcCcEEEEEccCCceeeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHh
Confidence 2468999999999999999999999999987 2334455
Q ss_pred CCCCCCCCccccCCcccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccc
Q psy11074 547 NPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRG 626 (710)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~g 626 (710)
|+.|+.+.+|...|..|++||+.||++.|||+||.|.+.+|+++|+||+|||||++++|+.+|++||++|+.+|+++|.|
T Consensus 238 h~~m~~~~~c~~~f~~gitnGa~wy~~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~g 317 (392)
T cd03864 238 HGWMHKGWNCGDYFDEGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQG 317 (392)
T ss_pred CCcccCCCCCcccCCCCcccCceeEecCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence 77888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEe
Q psy11074 627 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLG 702 (710)
Q Consensus 627 I~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~ 702 (710)
|+|+|+|.+|+||++|+|.|.+.+++++|+.+|+||+.|+||+|+|+|++.||++++++ |+|..++++.+||+|.
T Consensus 318 I~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y~r~l~pG~Y~l~vs~~Gy~~~t~~-v~V~~~~~~~~df~L~ 392 (392)
T cd03864 318 IKGMVTDENNNGIANAVISVSGISHDVTSGTLGDYFRLLLPGTYTVTASAPGYQPSTVT-VTVGPAEATLVNFQLK 392 (392)
T ss_pred EEEEEECCCCCccCCeEEEEECCccceEECCCCcEEecCCCeeEEEEEEEcCceeEEEE-EEEcCCCcEEEeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999998888999884
No 5
>KOG2649|consensus
Probab=100.00 E-value=2.6e-79 Score=639.71 Aligned_cols=340 Identities=49% Similarity=0.850 Sum_probs=324.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
.||+|++|+++|+++.++||.++++++||+|++||+||+++|| +.|+.+.+++|++.++|+|||+|.+|+|+++.|+
T Consensus 68 ~hh~y~~m~~~l~~~~~~~p~itrlYSiGkSv~Gr~L~Vle~s---d~PgeH~~gePEfKyv~nmHGnE~vGRElll~L~ 144 (500)
T KOG2649|consen 68 GHHNYDDLEKALKDFTKRCPNITRLYSIGKSVEGRELWVIEIS---DRPGEHEPGEPEFKYIGNMHGNEVVGRELLLRLA 144 (500)
T ss_pred CCCCHHHHHHHHHHHHhhCCcceeeeeccccccCceEEEEEcC---CCCCcccCCCCcceeeeeccccccccHHHHHHHH
Confidence 7999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc---cC-------
Q psy11074 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY---EA------- 508 (710)
Q Consensus 439 ~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~---~~------- 508 (710)
++||.+|++|+++++|+++++|||+|+|||||||.+..+++. |-.+|.|++|+|||||||+.+.. ..
T Consensus 145 e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~---~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~ 221 (500)
T KOG2649|consen 145 EYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKRGDRG---WATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNS 221 (500)
T ss_pred HHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhccccc---ceecccCccccchhccCcccccceeeeeeeccccc
Confidence 999999999999999999999999999999999999999999 99999999999999999998765 10
Q ss_pred --------CCCChHHHHHHHHHHHhCCceEEEEecCCcc----------------------------cccccccCCCCCC
Q psy11074 509 --------KKVYEPETQAIMNFIYSNPFVLSGNLHGGAV----------------------------ARDYASRNPMMAP 552 (710)
Q Consensus 509 --------~~~sepEt~al~~~~~~~~~~~~~~lH~~~~----------------------------~~~y~~~~~~~~~ 552 (710)
....+|||+|+++|+++++|+++.+||||+. +..|+..|+.|..
T Consensus 222 ~l~~~~~~~~~~~pEt~Avm~W~~~~pFvLSAnLHGG~lvanYPfD~~~~~~~~~s~tpDd~~F~~La~~YA~~h~~M~~ 301 (500)
T KOG2649|consen 222 HLIMFNDDLNLRQPETIAVMKWLRDIPFVLSANLHGGALVANYPFDDTEDKRKYYSASPDDATFRFLARIYAKSHRNMSL 301 (500)
T ss_pred ccccccccccccCccHHHHHHHHhhcceeeeccccCCceEEEccccCCcccccccCCCCCcHHHHHHHHHHHhhChhhhc
Confidence 1257999999999999999999999999998 6788888999999
Q ss_pred CCcccc----CCcccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceE
Q psy11074 553 GHACGF----DFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVY 628 (710)
Q Consensus 553 ~~~~~~----~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~ 628 (710)
+.+|.. ....|++||+.||+++|||+||.|.+++|+++|+||||+|||.+++|+.+|+.||++|++|++|+|.||+
T Consensus 302 ~~~~~~~~~~~~~~GItNGA~Wy~v~GgMqDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eqvH~GIk 381 (500)
T KOG2649|consen 302 GKRCECDGNNGSVGGITNGASWYPVYGGMQDWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQVHRGIK 381 (500)
T ss_pred CCCCcccccCCCcCceecCcceeecCCcccchhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHHHHhccc
Confidence 988873 2236799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEecCc
Q psy11074 629 GIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKN 705 (710)
Q Consensus 629 G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~~~ 705 (710)
|.|+|..|+||++|+|+|.|.++.++|..+|+|||+|+||.|.|+|++.||.+.+++ |.|.......+||+|++..
T Consensus 382 G~V~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWRLL~PG~y~vta~A~Gy~~~tk~-v~V~~~~a~~~df~L~~~~ 457 (500)
T KOG2649|consen 382 GLVFDDTGNPIANATISVDGINHDVTTAKEGDYWRLLPPGKYIITASAEGYDPVTKT-VTVPPDRAARVNFTLQRSI 457 (500)
T ss_pred eeEEcCCCCccCceEEEEecCcCceeecCCCceEEeeCCcceEEEEecCCCcceeeE-EEeCCCCccceeEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999 9999988999999999764
No 6
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=1e-77 Score=641.17 Aligned_cols=335 Identities=35% Similarity=0.632 Sum_probs=312.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ ++++.+.++||.|+++||||||||+|++++++|+
T Consensus 1 ~Yh~y~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~l~~l~Is---~~~~~~~~~kp~v~~~~giHg~E~ig~e~~l~l~ 77 (363)
T cd06245 1 RYHHYKELSEFLRGLTLNYPHITNLTSLGQSVEFRPILSLEIS---NKPNNSEPEEPKIRFVAGIHGNAPVGTELLLALA 77 (363)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCceEEEEEec---CCCCCCCCCCCEEEEECCccCCcHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999 5665566789999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHH
Q psy11074 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQA 518 (710)
Q Consensus 439 ~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~a 518 (710)
++||.+|++|+++++||++++|+|||++||||+++++++++. +..+|.||+|||||||||..|.+ ..+++||||+|
T Consensus 78 ~~L~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~---~~~~r~na~GvDLNRNf~~~~~g-~~~~sepEt~A 153 (363)
T cd06245 78 EFLCMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEKQCT---SKEGHTNAHGKDLDTDFTSNASN-MSADVQPETKA 153 (363)
T ss_pred HHHHHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecCCCc---ccCCCCCcccccCCCCCCcccCC-CCCCCcHHHHH
Confidence 999999999999999999999999999999999999888754 44568999999999999998765 67889999999
Q ss_pred HHHHHHhCCceEEEEecCCcc----------------------cccccccCCCCCCCCc-cc----cCCcccccccceEE
Q psy11074 519 IMNFIYSNPFVLSGNLHGGAV----------------------ARDYASRNPMMAPGHA-CG----FDFKDGITNGNYWY 571 (710)
Q Consensus 519 l~~~~~~~~~~~~~~lH~~~~----------------------~~~y~~~~~~~~~~~~-~~----~~~~~g~~~~~~~y 571 (710)
|++|+.+.+|+++++||||++ +..|+.+|+.|+.+.+ |. ..|+.|++||+.||
T Consensus 154 v~~~~~~~~f~l~~~lH~~~~~~~yPy~~~~~~~pd~~~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy 233 (363)
T cd06245 154 IIDNLISKDFTLSVALDGGSVVATYPYDKPVQTVENKETLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWN 233 (363)
T ss_pred HHHHHHhCCceEEEEEcCCcEEEEecCCCCCcCCCCHHHHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceee
Confidence 999999999999999999998 3445566777876653 53 47899999999999
Q ss_pred eecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCCeEEEEeeccc
Q psy11074 572 KVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDK 651 (710)
Q Consensus 572 ~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~ 651 (710)
++.|+|+||.|.+.+|+++|+|++|||||++++|+.+|++||++|+.+|+++|.||+|+|+|.+|+||++|+|.|.+..
T Consensus 234 ~~~g~mqd~~y~~~~~~e~t~e~~~~k~P~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~~- 312 (363)
T cd06245 234 SHLGSMKDFSVDFGHCPEITVYTSCCLFPSASQLPDLWAENKKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGGH- 312 (363)
T ss_pred cccCCcchhhhhhcCCceeEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEe
Q psy11074 652 AVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLG 702 (710)
Q Consensus 652 ~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~ 702 (710)
+++|+.+|.|++.|+||+|+|+|++.||++++++ |.|..++.+.+||.|.
T Consensus 313 ~~~T~~~G~y~~~L~pG~y~v~vs~~Gy~~~~~~-V~v~~~~~~~~~f~L~ 362 (363)
T cd06245 313 RVYTKEGGYFHVLLAPGQHNINVIAEGYQQEHLP-VVVSHDEASSVKIVLD 362 (363)
T ss_pred ceEeCCCcEEEEecCCceEEEEEEEeCceeEEEE-EEEcCCCeEEEEEEec
Confidence 8999999999888999999999999999999999 9999999999999986
No 7
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=2e-74 Score=619.41 Aligned_cols=335 Identities=47% Similarity=0.848 Sum_probs=301.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHH
Q psy11074 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFL 437 (710)
Q Consensus 358 ~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l 437 (710)
.+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|| +.+..+..+||.|+++|+||||||+|++++++|
T Consensus 3 ~~Y~~~~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~i~~l~ig---~~~~~~~~~~P~v~~~~~iHg~E~ig~~~~l~l 79 (376)
T cd03866 3 FNYHNTEQMEAYLKDVNKNYPSITHLHSIGQSVEGRELWVLVLG---RFPREHRIGIPEFKYVANMHGNEVVGRELLLHL 79 (376)
T ss_pred cccCCHHHHHHHHHHHHHhCCCcEEEEEeeccCCCceEEEEEec---cCCccccCCCCeEEEEcccCCCcHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999 445444567999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHH
Q psy11074 438 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQ 517 (710)
Q Consensus 438 ~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~ 517 (710)
+++||++|++|+++++||++++|+|||++||||+++++ .+|. |+++|.||+|||||||||+.|.. ...++||||+
T Consensus 80 ~~~L~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~~-~~~~---~~~~R~N~~GvDLNRnf~~~w~~-~~~~sepEt~ 154 (376)
T cd03866 80 IDYLVTSYGSDPVITRLLNSTRIHIMPSMNPDGFEASK-PDCY---YSVGRYNKNGYDLNRNFPDAFEE-NNEQRQPETR 154 (376)
T ss_pred HHHHHHhcCCCHHHHHHHhCCEEEEEeccCCchhhhcc-cccc---cccccccCCCcccCcCchhhhcc-CCCCCcHHHH
Confidence 99999999999999999999999999999999999984 6788 89999999999999999999987 3446999999
Q ss_pred HHHHHHHhCCceEEEEecCCcccccccccC-------------------------------CCCCCCCccc--cCCcccc
Q psy11074 518 AIMNFIYSNPFVLSGNLHGGAVARDYASRN-------------------------------PMMAPGHACG--FDFKDGI 564 (710)
Q Consensus 518 al~~~~~~~~~~~~~~lH~~~~~~~y~~~~-------------------------------~~~~~~~~~~--~~~~~g~ 564 (710)
||++|+++.+|+++++||+|++...|+..+ +.|..|..|. ..|..|+
T Consensus 155 al~~~~~~~~~~l~~~~H~~~~~~~YP~~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~g~~~~~~~~~~~Gi 234 (376)
T cd03866 155 AVMEWLKSETFVLSANLHGGALVASYPYDNGNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYKGNHCSDKQSFPSGI 234 (376)
T ss_pred HHHHHHHhcCcEEEEEccCCceEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhCCCCCCccccCCCCc
Confidence 999999999999999999999954443221 1122233344 4788899
Q ss_pred cccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCCeEE
Q psy11074 565 TNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAII 644 (710)
Q Consensus 565 ~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~A~v 644 (710)
+||+.||+++|+|+||+|.+++|+++|+||+|||||++++|+.+|++|+++|+.+|++++.||+|+|+|.+|+||++|+|
T Consensus 235 ~nga~~Y~~sG~~~Dw~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~D~~g~pi~~A~V 314 (376)
T cd03866 235 TNGYQWYPLQGGMQDYNYVWAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVFDSNGNPIPNAIV 314 (376)
T ss_pred ccceEEEEcCCCchhhhhhhCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEECCCCCccCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccc--ceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCC----cEEEEEEE
Q psy11074 645 TVRWNDK--AVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTE----SVRLDFML 701 (710)
Q Consensus 645 ~v~~~~~--~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~----~~~~~~~L 701 (710)
.|.++.+ .++|+.+|.|++.|+||+|+|+|++.||++++++ |.|..+. ..++||+|
T Consensus 315 ~v~g~~~~~~~~T~~~G~y~~~l~pG~Y~v~vsa~Gy~~~~~~-v~v~~~~~~~~~~~~~~~~ 376 (376)
T cd03866 315 EVKGRKHICPYRTNVNGEYFLLLLPGKYMINVTAPGFKTVITN-VIIPYNPDNFSALKHDFSL 376 (376)
T ss_pred EEEcCCceeEEEECCCceEEEecCCeeEEEEEEeCCcceEEEE-EEeCCCCCccceeEeeeeC
Confidence 9999875 3589999999888999999999999999999999 9887542 56677764
No 8
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=3.2e-73 Score=614.34 Aligned_cols=338 Identities=54% Similarity=0.963 Sum_probs=308.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||+|+||.++|++|+++||+++++.+||+|++||+|++++|| +++....++||.|+++|++|||||+|++++++|++
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~l~~iG~S~eGR~i~~l~is---~~~~~~~~~kp~v~~~~~iH~~E~ig~~~~l~l~~ 77 (372)
T cd03868 1 YHHYEELTDLLHSLAKKYPNIARLHSIGRSVEGRELWVLRIT---DNVNRREPGEPMFKYVGNMHGDETVGRQVLIYLAQ 77 (372)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeccccCCCceEEEEEEe---cCCCCCCCCCCeEEEECCcCCCcHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 55544556799999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCccc--CCCCChHHHH
Q psy11074 440 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYE--AKKVYEPETQ 517 (710)
Q Consensus 440 ~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~--~~~~sepEt~ 517 (710)
+||++|..|+++++||++++|+|||++||||++++++++| ++.|+++|.||+|||||||||++|+.. ..++|||||+
T Consensus 78 ~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~-~~~~~~~R~n~~GvDLNRnf~~~~~~~~~~~~~sepEt~ 156 (372)
T cd03868 78 YLLENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGDC-SCGGYGGRENANNVDLNRNFPDQFEGKLQRLSERQPETV 156 (372)
T ss_pred HHHHhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccCc-cccCCCccCCCCCccCCCCCCcccCCcCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999998885 334999999999999999999999872 3678999999
Q ss_pred HHHHHHHhCCceEEEEecCCcccccccccCC------------------------------CCCCCCcc--ccCCccccc
Q psy11074 518 AIMNFIYSNPFVLSGNLHGGAVARDYASRNP------------------------------MMAPGHAC--GFDFKDGIT 565 (710)
Q Consensus 518 al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~------------------------------~~~~~~~~--~~~~~~g~~ 565 (710)
||++|+++++|++++++|++++...|+..+. .|..+.++ ...|..|++
T Consensus 157 av~~~~~~~~~~l~~~lH~~~~~~~yP~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~~G~~ 236 (372)
T cd03868 157 AMMKWIRSNPFVLSGNLHGGSVVASYPYDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTGKPCCEGETFKDGIT 236 (372)
T ss_pred HHHHHHhhCCcEEEEEccCccEEEeccccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCCCCCCccccCCCCcc
Confidence 9999999999999999999998554443211 11112222 357888999
Q ss_pred ccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCCeEEE
Q psy11074 566 NGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIIT 645 (710)
Q Consensus 566 ~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~A~v~ 645 (710)
+++.||+++|+|+||+|..++|++||+||+|+|||++++|+.+|++|+++|+.++++++.+|+|+|+|.+|+|+++|+|+
T Consensus 237 ~~~~~Y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~~i~G~V~d~~g~pv~~A~V~ 316 (372)
T cd03868 237 NGAHWYDVPGGMQDYNYLHSNCFEITLELSCCKYPPASELPEEWNNNRESLLAYLEQVHIGVKGFVRDASGNPIEDATIM 316 (372)
T ss_pred cCceeeeCCCCcchhhhhccCeeEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhCCceEEEEEcCCCCcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEE
Q psy11074 646 VRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFML 701 (710)
Q Consensus 646 v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L 701 (710)
|.+..++++||.+|.|++.|+||+|+|+|++.||++++++.+.|..++.+.+||.|
T Consensus 317 v~~~~~~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~~~~~~~~L 372 (372)
T cd03868 317 VAGIDHNVTTAKFGDYWRLLLPGTYTITAVAPGYEPSTVTDVVVKEGEATSVNFTL 372 (372)
T ss_pred EEecccceEeCCCceEEecCCCEEEEEEEEecCCCceEEeeEEEcCCCeEEEeeEC
Confidence 99999999999999998789999999999999999999986779889999999876
No 9
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=6.7e-72 Score=605.19 Aligned_cols=338 Identities=41% Similarity=0.756 Sum_probs=301.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||+|+||.++|++|+++||+++++.+||+|+|||+|++++|| ++++.....||.|++.||||||||+|++++++|++
T Consensus 1 y~~y~ei~~~l~~la~~~p~~~~~~~iG~S~EGR~i~~l~is---~~~~~~~~~kp~v~i~~giHg~E~ig~~~~~~l~~ 77 (395)
T cd03867 1 HHSYSQMVSVLKRTAARCSHIARTYSIGRSFEGRDLLVIEFS---SNPGQHELLEPEVKYIGNMHGNEVLGRELLIYLAQ 77 (395)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEccccCCCceEEEEEec---cCCCcccccCCeEEEEccccCCcHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 55555556799999999999999999999999999
Q ss_pred HHHHhc-CCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc--------c-C-
Q psy11074 440 YLVLKD-GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY--------E-A- 508 (710)
Q Consensus 440 ~l~~~y-~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~--------~-~- 508 (710)
+||.+| ..|+++++||++++|+|||++||||+++++++++..+.|+++|.||+|||||||||..|.. + +
T Consensus 78 ~L~~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R~n~~GvDLNRNf~~~~~~~~~~~~~~g~~~ 157 (395)
T cd03867 78 FLCSEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGRQNAQNIDLNRNFPDLTSEVYRRRRQRGART 157 (395)
T ss_pred HHHHhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCCcCCCCcccccCCCcchhhhcchhhcccccc
Confidence 999998 5789999999999999999999999999988775334499999999999999999999853 0 1
Q ss_pred ----------CCCChHHHHHHHHHHHhCCceEEEEecCCcccccccccC------------------------------C
Q psy11074 509 ----------KKVYEPETQAIMNFIYSNPFVLSGNLHGGAVARDYASRN------------------------------P 548 (710)
Q Consensus 509 ----------~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~------------------------------~ 548 (710)
.+.|||||+||++|+++++|+++++||||++...|+..+ +
T Consensus 158 ~~~p~p~~~~~~~sepEt~Av~~~~~~~~~~l~~s~Hs~~~~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~ 237 (395)
T cd03867 158 DHIPIPDSYWFGKVAPETKAVMKWMRSIPFVLSASLHGGDLVVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHP 237 (395)
T ss_pred cCCCCccccccCccCHHHHHHHHHHhhCCceEEEEccCcceeEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCc
Confidence 124899999999999999999999999999844333221 1
Q ss_pred CCCCCC--ccc--cCCcccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccc
Q psy11074 549 MMAPGH--ACG--FDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVH 624 (710)
Q Consensus 549 ~~~~~~--~~~--~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~ 624 (710)
.|..+. .|. ..+..|+++|+.||+++|+|+||+|.+++|++||+||+|+|||++++|+.+|++|+++|+.++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~g~i~~ga~~Y~~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~~~ 317 (395)
T cd03867 238 TMSDRSTRRCGGNFHKRGGIINGAEWYSFSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEMVH 317 (395)
T ss_pred cccCCCCCCCccccccCCCceecceeeEcCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122111 222 1235667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecC--CCcEEEEEEE
Q psy11074 625 RGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPD--TESVRLDFML 701 (710)
Q Consensus 625 ~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~--~~~~~~~~~L 701 (710)
.+|+|+|+|.+|+||++|+|.|.++.++++||.+|.|++.|+||+|+|+|++.||++++++ |+|.. ++..++||+|
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~~~~~-v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYWRLLPPGIHIVSAQAPGYTKVMKR-VTLPARMKRAGRVDFVL 395 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEEEecCCCcEEEEEEecCeeeEEEE-EEeCCcCCCceEeeeEC
Confidence 9999999999999999999999999999999999999988999999999999999999999 99975 6788999986
No 10
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=100.00 E-value=1.5e-67 Score=572.82 Aligned_cols=335 Identities=53% Similarity=0.944 Sum_probs=304.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||+|+||.++|++|+++||+++++.+||+|++||+|++++|+ +++....++||.|+++|++||+||+|++++++|++
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~i~---~~~~~~~~~kp~v~i~agiH~~E~~g~~~~~~l~~ 77 (374)
T cd03858 1 YHNYAELESFLKEVAANYPNITRLYSIGKSVQGRDLWVLEIS---DNPGVHEPGEPEFKYVGNMHGNEVVGRELLLRLAQ 77 (374)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEcccCCCCCEEEEEEEe---cCCCCCCCCCceEEEeccccCCchhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 44444445799999999999999999999999999
Q ss_pred HHHHhcC-CCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc----cCCCCChH
Q psy11074 440 YLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY----EAKKVYEP 514 (710)
Q Consensus 440 ~l~~~y~-~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~----~~~~~sep 514 (710)
+|+.+|. +|+.+++||++++|+|||++||||++++++++|. |+++|.|+.|||||||||..|.. +..++|||
T Consensus 78 ~L~~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~---w~~~R~n~~GvDLNRnf~~~~~~~~~~G~~~~sep 154 (374)
T cd03858 78 YLCENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCG---GLTGRYNANGVDLNRNFPDLFFTNYRSSDNGPRQP 154 (374)
T ss_pred HHHHHhccCCHHHHHHHhCCEEEEEcccCCchhhhhcccCCc---ccccCCCCcceecccCCCcccccccccCCCcccCH
Confidence 9999987 8999999999999999999999999999999999 99999999999999999999986 35778999
Q ss_pred HHHHHHHHHHhCCceEEEEecCCcccccccccCC-----------------------------CCCCCCccc----cCCc
Q psy11074 515 ETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNP-----------------------------MMAPGHACG----FDFK 561 (710)
Q Consensus 515 Et~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~-----------------------------~~~~~~~~~----~~~~ 561 (710)
||+||++|+++++|.+++|+|++++...|+..+. .|..+..|. ..|.
T Consensus 155 Et~al~~~~~~~~~~~~i~~Hs~~~~~~yp~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~ 234 (374)
T cd03858 155 ETKAVMNWIKSIPFVLSANLHGGALVANYPYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGGPCCCNDDEEFP 234 (374)
T ss_pred HHHHHHHHHhhCCceEEEEccCCceEEEcccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCCCCCCcccccCC
Confidence 9999999999999999999999988554443221 011111110 2677
Q ss_pred ccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCC
Q psy11074 562 DGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPS 641 (710)
Q Consensus 562 ~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~ 641 (710)
.|+++++.||+++|+++||+|..+++++||+||+|+++|++++++.+|.+|+++++.++++++.+|+|+|+|.+|+|+++
T Consensus 235 ~G~~~~~~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l~~~a~~~i~G~V~d~~g~pl~~ 314 (374)
T cd03858 235 GGITNGAAWYSVTGGMQDWNYLHTNCFEITLELSCCKFPPASELPKYWEENREALLAYIEQVHRGIKGFVRDANGNPIAN 314 (374)
T ss_pred CCcEEcceeeEcCCCchhhhhhccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHHHhhcCCceEEEEECCCCCccCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecC-CCcEEEEEEE
Q psy11074 642 AIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPD-TESVRLDFML 701 (710)
Q Consensus 642 A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~-~~~~~~~~~L 701 (710)
|+|.|.+...++.||.+|.|...+++|+|+|+|++.||++++.+ +.+.. ++.+.+||.|
T Consensus 315 A~V~i~~~~~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~-v~v~~~g~~~~~~~~l 374 (374)
T cd03858 315 ATISVEGINHDVTTAEDGDYWRLLLPGTYNVTASAPGYEPQTKS-VVVPNDNSAVVVDFTL 374 (374)
T ss_pred eEEEEecceeeeEECCCceEEEecCCEeEEEEEEEcCcceEEEE-EEEecCCceEEEeeEC
Confidence 99999999999999999999777999999999999999999998 88877 8888899875
No 11
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=1.1e-60 Score=510.04 Aligned_cols=248 Identities=38% Similarity=0.708 Sum_probs=230.5
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+||+|+||.++|++|+++||+++++++||+|+|||+|++|+||++ +..+..+||.|+++|+||||||+|++++++|+
T Consensus 4 ~yh~y~em~~~L~~la~~yP~i~~l~sIGkS~EGR~L~~l~Is~~---~~~~~~~kP~v~~~g~iHgrE~ig~~~~l~li 80 (405)
T cd03869 4 KHHNYKDMRQLMKVVNEMCPNITRIYNIGKSYQGLKLYAMEISDN---PGEHELGEPEFRYVAGMHGNEVLGRELLLLLM 80 (405)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEEeEECcCCceEEEEEEecC---CccccCCCCeEEEEcccCCCcHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999999987 55555679999999999999999999999999
Q ss_pred HHHHHhcC-CChHHHHhhcceEEEEEeccCchhhhhhhcC------------CC-----CC---c---------------
Q psy11074 125 QYLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKEG------------NL-----NT---K--------------- 168 (710)
Q Consensus 125 ~~L~~~y~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~------------~~-----NR---~--------------- 168 (710)
++||++|. .|+++++||++++|+|+|++|||||++++++ +| || .
T Consensus 81 ~~L~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R~na~GVDLNRNFp~~~~~~W~~~~~~~~~ 160 (405)
T cd03869 81 QFLCQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGRWTEEGIDINHNFPDLNTILWEAEDKKKVP 160 (405)
T ss_pred HHHHHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCccCCCCccccCCCccccccccccccccccc
Confidence 99999995 7999999999999999999999999987543 12 44 0
Q ss_pred ---------------------C-----------------------------------------------C----------
Q psy11074 169 ---------------------Q-----------------------------------------------K---------- 170 (710)
Q Consensus 169 ---------------------~-----------------------------------------------p---------- 170 (710)
+ |
T Consensus 161 ~~~~~~~~Pc~~~Y~G~~~~sEPET~Av~~~i~~~~FvLSanlHgG~lv~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~ 240 (405)
T cd03869 161 RKVPNHHIPIPEWYLSENATVAPETRAVIAWMEKIPFVLGANLQGGELVVSYPYDMTRTPWATQEATPTPDDAVFRWLAT 240 (405)
T ss_pred ccccccCCCCccccCCCCCCCcHHHHHHHHHHHhCCceEEEEecCccEEEEcCcccccCCccccCCCCCCCHHHHHHHHH
Confidence 0 0
Q ss_pred ---------------------------------------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHH
Q psy11074 171 ---------------------------------------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESL 211 (710)
Q Consensus 171 ---------------------------------------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al 211 (710)
|||||+|.++||||+|+|+||||||++++|+.+|+.||+||
T Consensus 241 ~Ya~~h~~M~~~~~~~c~~~~~~~~~GitNGa~Wy~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~al 320 (405)
T cd03869 241 SYASTHLLMTDASRRVCHTEDFQKEDGIINGASWHTVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESL 320 (405)
T ss_pred HHHHhCHHhhcCCCCCCCCcccccCCCceeCCeeccCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCC-Cce
Q psy11074 212 IKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDT-ESV 290 (710)
Q Consensus 212 ~~~~~~~~~gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~-~~~ 290 (710)
+.|++++|.||+|+|+|.+|.||++|+|.|+|++|.++|..+|+|||+|+||+|+|+++|.||.+++ +.++|..+ .++
T Consensus 321 l~~~~~vh~GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywRll~pG~y~v~~~a~gy~~~~-~~~~v~~~~~~~ 399 (405)
T cd03869 321 LVFMEQVHRGIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWRLLNPGEYRVTAHAEGYTSST-KNCEVGYEMGPT 399 (405)
T ss_pred HHHHHHHhcCceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEEecCCceEEEEEEecCCCccc-EEEEEcCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88888866 677
Q ss_pred EEEEEe
Q psy11074 291 RLDFML 296 (710)
Q Consensus 291 ~~~~~L 296 (710)
.+||+|
T Consensus 400 ~~~f~l 405 (405)
T cd03869 400 QCNFTL 405 (405)
T ss_pred eeccCC
Confidence 888876
No 12
>KOG2649|consensus
Probab=100.00 E-value=1.5e-60 Score=498.84 Aligned_cols=251 Identities=47% Similarity=0.847 Sum_probs=241.6
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
.||+|++|+++|++++.+||.++++++||+|+|||+||+++||+. |+.+..++|.+.++|+|||||.+|++++++|+
T Consensus 68 ~hh~y~~m~~~l~~~~~~~p~itrlYSiGkSv~Gr~L~Vle~sd~---PgeH~~gePEfKyv~nmHGnE~vGRElll~L~ 144 (500)
T KOG2649|consen 68 GHHNYDDLEKALKDFTKRCPNITRLYSIGKSVEGRELWVIEISDR---PGEHEPGEPEFKYIGNMHGNEVVGRELLLRLA 144 (500)
T ss_pred CCCCHHHHHHHHHHHHhhCCcceeeeeccccccCceEEEEEcCCC---CCcccCCCCcceeeeeccccccccHHHHHHHH
Confidence 679999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC--------------CCc----------------------
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL--------------NTK---------------------- 168 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~--------------NR~---------------------- 168 (710)
++||.+|++|+++++|++++.|+|+|++||||||.+..+++ ||+
T Consensus 145 e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~ 224 (500)
T KOG2649|consen 145 EYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKRGDRGWATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLI 224 (500)
T ss_pred HHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhcccccceecccCccccchhccCcccccceeeeeeecccccccc
Confidence 99999999999999999999999999999999999988665 450
Q ss_pred ---------C---------------------------------------------C------------------------
Q psy11074 169 ---------Q---------------------------------------------K------------------------ 170 (710)
Q Consensus 169 ---------~---------------------------------------------p------------------------ 170 (710)
+ |
T Consensus 225 ~~~~~~~~~~pEt~Avm~W~~~~pFvLSAnLHGG~lvanYPfD~~~~~~~~~s~tpDd~~F~~La~~YA~~h~~M~~~~~ 304 (500)
T KOG2649|consen 225 MFNDDLNLRQPETIAVMKWLRDIPFVLSANLHGGALVANYPFDDTEDKRKYYSASPDDATFRFLARIYAKSHRNMSLGKR 304 (500)
T ss_pred cccccccccCccHHHHHHHHhhcceeeeccccCCceEEEccccCCcccccccCCCCCcHHHHHHHHHHHhhChhhhcCCC
Confidence 0 0
Q ss_pred ------------------------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEE
Q psy11074 171 ------------------------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIV 226 (710)
Q Consensus 171 ------------------------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V 226 (710)
|||||+|.++||||||+|+||+|||.+++|+.+||.|+++|+.|++|+|.||+|.|
T Consensus 305 ~~~~~~~~~~~GItNGA~Wy~v~GgMqDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eqvH~GIkG~V 384 (500)
T KOG2649|consen 305 CECDGNNGSVGGITNGASWYPVYGGMQDWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQVHRGIKGLV 384 (500)
T ss_pred CcccccCCCcCceecCcceeecCCcccchhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHHHHhccceeE
Confidence 69999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEeecc
Q psy11074 227 TDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKK 299 (710)
Q Consensus 227 ~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~~ 299 (710)
+|..|.||++|+|.|+|++|.++|...|+|||+|+||.|.|+++|.||.+.+ ++|+|....+..+||+|++.
T Consensus 385 ~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWRLL~PG~y~vta~A~Gy~~~t-k~v~V~~~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 385 FDDTGNPIANATISVDGINHDVTTAKEGDYWRLLPPGKYIITASAEGYDPVT-KTVTVPPDRAARVNFTLQRS 456 (500)
T ss_pred EcCCCCccCceEEEEecCcCceeecCCCceEEeeCCcceEEEEecCCCccee-eEEEeCCCCccceeEEEecC
Confidence 9999999999999999999999999999999999999999999999999999 89999998888999999984
No 13
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=1.2e-59 Score=502.50 Aligned_cols=249 Identities=46% Similarity=0.797 Sum_probs=233.5
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+||+|+||.++|++|+++||+++++++||+|+|||+|++|+||++ ++.+.+.||.|+++|+||||||+|++++++++
T Consensus 4 ~Yh~y~e~~~~L~~l~~~~p~i~~l~~IG~S~eGR~I~~l~Is~~---~~~~~~~kP~v~i~g~iHg~E~ig~~~~l~l~ 80 (402)
T cd03865 4 EYHRYPELREALVSVWLQCPSISRIYTVGRSFEGRELLVIEMSDN---PGEHEPGEPEFKYIGNMHGNEAVGRELLIYLA 80 (402)
T ss_pred ccCCHHHHHHHHHHHHHHCCCceEEEecccccCCCeEEEEEeecC---CCCCCCCCCEEEEECCcCCCcHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999987 55556689999999999999999999999999
Q ss_pred HHHHHhcC-CChHHHHhhcceEEEEEeccCchhhhhhh------------cCCC-----CCc------------------
Q psy11074 125 QYLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAK------------EGNL-----NTK------------------ 168 (710)
Q Consensus 125 ~~L~~~y~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~~------------~~~~-----NR~------------------ 168 (710)
++||.+|. .|+++++||++++|+|||++|||||+++. |.++ ||+
T Consensus 81 ~~L~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~ 160 (402)
T cd03865 81 QYLCNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNAQGIDLNRNFPDLDRIVYVNEREGGPN 160 (402)
T ss_pred HHHHHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhcccccCcccCCCCCcccchhhhhhccCCCc
Confidence 99999996 58999999999999999999999999863 2233 550
Q ss_pred -----------------C----------------------------------------------C---------------
Q psy11074 169 -----------------Q----------------------------------------------K--------------- 170 (710)
Q Consensus 169 -----------------~----------------------------------------------p--------------- 170 (710)
| |
T Consensus 161 ~~~~~~~~~~~~~~~~~~pEt~Avm~w~~~~~FvlsanlHgG~lva~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~ 240 (402)
T cd03865 161 NHLLKNMKKAVDENTKLAPETKAVIHWIMDIPFVLSANLHGGDLVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSL 240 (402)
T ss_pred cccccccccccccccCCChHHHHHHHHHHhCCcEEEEEccCccEEEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhh
Confidence 1 0
Q ss_pred ------------------------------------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHH
Q psy11074 171 ------------------------------------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKL 214 (710)
Q Consensus 171 ------------------------------------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~ 214 (710)
|||||+|.++||||||+|+||||||.+++|+.+|+.|++||+.|
T Consensus 241 h~~m~~~~~~~c~~~~~~~~f~~GitNGa~Wy~~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~ 320 (402)
T cd03865 241 NPAMSDPNRPPCRKNDDDSSFVDGTTNGGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNY 320 (402)
T ss_pred CHHhhcCCCCCCCCCCccccCCCCeecCceecccCCcccchhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999
Q ss_pred HHHHhcceeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEE
Q psy11074 215 IENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDF 294 (710)
Q Consensus 215 ~~~~~~gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 294 (710)
++|++.||+|+|+|.+|.||++|+|.|+|++++++|+.+|+|+++|+||+|+|+|++.||++++ +.|+|..++++.+||
T Consensus 321 ~~q~~~gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~~~-~~V~V~~~~~~~vdf 399 (402)
T cd03865 321 IEQVHRGVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWRLLAPGNYKLTASAPGYLAVV-KKVAVPYSPAVRVDF 399 (402)
T ss_pred HHHhccceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEECCCCEEEEEEEEecCcccEE-EEEEEcCCCcEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred Eee
Q psy11074 295 MLG 297 (710)
Q Consensus 295 ~L~ 297 (710)
+|+
T Consensus 400 ~Le 402 (402)
T cd03865 400 ELE 402 (402)
T ss_pred EeC
Confidence 985
No 14
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=2.2e-59 Score=500.76 Aligned_cols=250 Identities=42% Similarity=0.789 Sum_probs=235.4
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+||+|+||.++|++|+++||+++++++||+|+|||+|++++||++ ++....+||+|+++|+||||||+|++++++|+
T Consensus 5 ~~h~y~ei~~~l~~l~~~~P~i~~l~~IG~S~eGR~I~~l~Is~~---~~~~~~~kp~v~~~g~iHg~E~ig~~~~l~li 81 (375)
T cd03863 5 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDN---PGIHEPGEPEFKYIGNMHGNEVVGRELLLNLI 81 (375)
T ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEEcccCCccceEEEEEEecC---CCcccCCCCeEEEEccccCCcHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999986 44455689999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC--------------CCcC---------------------
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL--------------NTKQ--------------------- 169 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~--------------NR~~--------------------- 169 (710)
++||++|+.|+++++||++++|+|||++|||||+++++++| ||+.
T Consensus 82 ~~L~~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~~~~~R~n~~GVDLNRNfp~~~~~~~~~~EpEt~Av~~~ 161 (375)
T cd03863 82 EYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTDPPQPETLAVMSW 161 (375)
T ss_pred HHHHHhccCCHHHHHHHhCCEEEEEeccCCchHHheecCCcccccccccCCCcccccCCccccccCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999985543 6610
Q ss_pred -----------------------------------------------------------------------C--------
Q psy11074 170 -----------------------------------------------------------------------K-------- 170 (710)
Q Consensus 170 -----------------------------------------------------------------------p-------- 170 (710)
+
T Consensus 162 ~~~~~f~l~~~lHsg~~~~~yPy~~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~nga~ 241 (375)
T cd03863 162 LKSYPFVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQ 241 (375)
T ss_pred HhhCCceEEEEecCCCEEEEccCcCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCccCCce
Confidence 0
Q ss_pred ------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEEcC-CCCCCCCcEEEEec
Q psy11074 171 ------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDT-YGNPLPSAIITVRW 243 (710)
Q Consensus 171 ------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~d~-~g~pi~~A~i~v~g 243 (710)
|||||+|.+++||++|+|++|||||++++|+.+|+.|++||+.++.+++.+|+|+|+|+ +|+||++|+|.|+|
T Consensus 242 wY~~~GgmqDw~y~~~~~~e~T~El~~~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~~g~pl~~AtV~V~g 321 (375)
T cd03863 242 WYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKEEELPKYWEQNRRSLLQFMKQVHRGVRGFVLDATDGRGILNATISVAD 321 (375)
T ss_pred EEecCCChhhhhhhhcCeEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCCCCCCCeEEEEec
Confidence 69999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred eeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEeec
Q psy11074 244 NDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGK 298 (710)
Q Consensus 244 ~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~ 298 (710)
++++++|+.+|+|+++|+||+|+|+|++.||++++ ++|.|..++.+.++|.|++
T Consensus 322 ~~~~~~Td~~G~f~~~l~pG~ytl~vs~~GY~~~~-~~v~V~~~~~~~~~~~L~~ 375 (375)
T cd03863 322 INHPVTTYKDGDYWRLLVPGTYKVTASARGYDPVT-KTVEVDSKGAVQVNFTLSR 375 (375)
T ss_pred CcCceEECCCccEEEccCCeeEEEEEEEcCcccEE-EEEEEcCCCcEEEEEEecC
Confidence 99999999999999999999999999999999999 6899999999999999974
No 15
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=3.6e-58 Score=490.76 Aligned_cols=248 Identities=35% Similarity=0.629 Sum_probs=233.4
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+||+|+||.+||++|+++||+++++++||+|+|||+|++|+|+++ ++...+.||.|+++||||||||+|++++++|+
T Consensus 1 ~Yh~y~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~l~~l~Is~~---~~~~~~~kp~v~~~~giHg~E~ig~e~~l~l~ 77 (363)
T cd06245 1 RYHHYKELSEFLRGLTLNYPHITNLTSLGQSVEFRPILSLEISNK---PNNSEPEEPKIRFVAGIHGNAPVGTELLLALA 77 (363)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCceEEEEEecCC---CCCCCCCCCEEEEECCccCCcHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999987 44556689999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhc---------CCC-----CCcC---------------------
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE---------GNL-----NTKQ--------------------- 169 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~---------~~~-----NR~~--------------------- 169 (710)
++||.+|..|+++++||++++|+|+|++|||||+++++ .+| ||+.
T Consensus 78 ~~L~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~~r~na~GvDLNRNf~~~~~g~~~~sepEt~Av~~~ 157 (363)
T cd06245 78 EFLCMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEKQCTSKEGHTNAHGKDLDTDFTSNASNMSADVQPETKAIIDN 157 (363)
T ss_pred HHHHHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecCCCcccCCCCCcccccCCCCCCcccCCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999874 344 7711
Q ss_pred ---------------------C----------------------------------------------------------
Q psy11074 170 ---------------------K---------------------------------------------------------- 170 (710)
Q Consensus 170 ---------------------p---------------------------------------------------------- 170 (710)
|
T Consensus 158 ~~~~~f~l~~~lH~~~~~~~yPy~~~~~~~pd~~~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy~~~g 237 (363)
T cd06245 158 LISKDFTLSVALDGGSVVATYPYDKPVQTVENKETLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWNSHLG 237 (363)
T ss_pred HHhCCceEEEEEcCCcEEEEecCCCCCcCCCCHHHHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceeecccC
Confidence 0
Q ss_pred ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEEcCCCCCCCCcEEEEeceeeceee
Q psy11074 171 RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTV 250 (710)
Q Consensus 171 g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t 250 (710)
|||||+|.+++|||+|+|+||||||++++|+.+|+.|++||+.++.++|.+|+|+|+|.+|+||++|+|.|+|.. +++|
T Consensus 238 ~mqd~~y~~~~~~e~t~e~~~~k~P~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~~-~~~T 316 (363)
T cd06245 238 SMKDFSVDFGHCPEITVYTSCCLFPSASQLPDLWAENKKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGGH-RVYT 316 (363)
T ss_pred CcchhhhhhcCCceeEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCCC-ceEe
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999986 8999
Q ss_pred CCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEee
Q psy11074 251 TNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLG 297 (710)
Q Consensus 251 ~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~ 297 (710)
+.+|+|++.|+||+|+|++++.||++++ +.|.|..++.+.+||+|.
T Consensus 317 ~~~G~y~~~L~pG~y~v~vs~~Gy~~~~-~~V~v~~~~~~~~~f~L~ 362 (363)
T cd06245 317 KEGGYFHVLLAPGQHNINVIAEGYQQEH-LPVVVSHDEASSVKIVLD 362 (363)
T ss_pred CCCcEEEEecCCceEEEEEEEeCceeEE-EEEEEcCCCeEEEEEEec
Confidence 9999999899999999999999999999 789999999999999986
No 16
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=5.4e-58 Score=492.11 Aligned_cols=248 Identities=42% Similarity=0.728 Sum_probs=231.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||+|+||.++|++|+++||+++++++||+|+|||+|++++||++ ++.+...||+|+++|+||||||+|++++++|++
T Consensus 1 ~h~y~em~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~is~~---~~~~~~~kp~v~~~g~iHg~E~ig~e~ll~l~~ 77 (392)
T cd03864 1 HHRYDDLVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEFSDN---PGIHEPLEPEFKYVGNMHGNEVLGRELLIQLSE 77 (392)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEecCC---CccccCCCCEEEEEcccCCCcHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999987 555566799999999999999999999999999
Q ss_pred HHHHhcC-CChHHHHhhcceEEEEEeccCchhhhhhhc------------CCC-----CCc-------------------
Q psy11074 126 YLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKE------------GNL-----NTK------------------- 168 (710)
Q Consensus 126 ~L~~~y~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~------------~~~-----NR~------------------- 168 (710)
+||++|. .|+++++||++++|+|||++||||++++.+ .|+ ||+
T Consensus 78 ~L~~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~ 157 (392)
T cd03864 78 FLCEEYRNGNERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNANGVDLNRNFPDLNTLMYYNEKYGGPNH 157 (392)
T ss_pred HHHHhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCccccccccccCcccccCCCcccccchhhhccCCccc
Confidence 9999996 589999999999999999999999998633 222 440
Q ss_pred ------------C---------------------------------------------------C---------------
Q psy11074 169 ------------Q---------------------------------------------------K--------------- 170 (710)
Q Consensus 169 ------------~---------------------------------------------------p--------------- 170 (710)
+ |
T Consensus 158 ~~P~~~~~~~~~epET~Av~~~~~~~~fvls~nlHgG~~v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~ 237 (392)
T cd03864 158 HLPLPDNWKSQVEPETLAVIQWMQNYNFVLSANLHGGAVVANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYA 237 (392)
T ss_pred cCCCccccccccCHHHHHHHHHHHhcCcEEEEEccCCceeeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHh
Confidence 0 0
Q ss_pred -----------------------------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcc
Q psy11074 171 -----------------------------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRG 221 (710)
Q Consensus 171 -----------------------------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~g 221 (710)
|||||+|.++||||+|+|+||||||.+++|+.+|+.||+||+.|+.++|.+
T Consensus 238 h~~m~~~~~c~~~f~~gitnGa~wy~~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~g 317 (392)
T cd03864 238 HGWMHKGWNCGDYFDEGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQG 317 (392)
T ss_pred CCcccCCCCCcccCCCCcccCceeEecCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence 699999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEee
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLG 297 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~ 297 (710)
|+|+|+|++|+||++|+|.|+|++++++|+.+|+|+++|+||+|+|++++.||++++ +.|+|..++.++++|+|+
T Consensus 318 I~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y~r~l~pG~Y~l~vs~~Gy~~~t-~~v~V~~~~~~~~df~L~ 392 (392)
T cd03864 318 IKGMVTDENNNGIANAVISVSGISHDVTSGTLGDYFRLLLPGTYTVTASAPGYQPST-VTVTVGPAEATLVNFQLK 392 (392)
T ss_pred EEEEEECCCCCccCCeEEEEECCccceEECCCCcEEecCCCeeEEEEEEEcCceeEE-EEEEEcCCCcEEEeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999 779999988888999884
No 17
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=7.5e-53 Score=452.56 Aligned_cols=248 Identities=45% Similarity=0.805 Sum_probs=226.7
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+||+|+||.++|++|+++||+++++++||+|+|||+|++++||++ +......+|.|+++|+||||||+|++++++|+
T Consensus 4 ~Y~~~~ei~~~l~~l~~~~p~i~~l~~IG~S~eGR~i~~l~ig~~---~~~~~~~~P~v~~~~~iHg~E~ig~~~~l~l~ 80 (376)
T cd03866 4 NYHNTEQMEAYLKDVNKNYPSITHLHSIGQSVEGRELWVLVLGRF---PREHRIGIPEFKYVANMHGNEVVGRELLLHLI 80 (376)
T ss_pred ccCCHHHHHHHHHHHHHhCCCcEEEEEeeccCCCceEEEEEeccC---CccccCCCCeEEEEcccCCCcHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999986 44445679999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh--------hcCCC-----CCcC----------------------
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA--------KEGNL-----NTKQ---------------------- 169 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~--------~~~~~-----NR~~---------------------- 169 (710)
++||++|.+|+++++||++++|+|+|++|||||+++ +|.+| ||+.
T Consensus 81 ~~L~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~R~N~~GvDLNRnf~~~w~~~~~~sepEt~al~~~~ 160 (376)
T cd03866 81 DYLVTSYGSDPVITRLLNSTRIHIMPSMNPDGFEASKPDCYYSVGRYNKNGYDLNRNFPDAFEENNEQRQPETRAVMEWL 160 (376)
T ss_pred HHHHHhcCCCHHHHHHHhCCEEEEEeccCCchhhhcccccccccccccCCCcccCcCchhhhccCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999997 44454 6610
Q ss_pred --------------------------------------C-----------------------------------------
Q psy11074 170 --------------------------------------K----------------------------------------- 170 (710)
Q Consensus 170 --------------------------------------p----------------------------------------- 170 (710)
|
T Consensus 161 ~~~~~~l~~~~H~~~~~~~YP~~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~g~~~~~~~~~~~Gi~nga~~ 240 (376)
T cd03866 161 KSETFVLSANLHGGALVASYPYDNGNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYKGNHCSDKQSFPSGITNGYQW 240 (376)
T ss_pred HhcCcEEEEEccCCceEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhCCCCCCccccCCCCcccceEE
Confidence 0
Q ss_pred -----ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEEcCCCCCCCCcEEEEecee
Q psy11074 171 -----RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWND 245 (710)
Q Consensus 171 -----g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~d~~g~pi~~A~i~v~g~~ 245 (710)
|||||+|.+++|+++|+|++|||||++++|+.+|+.|+++|+.++++++.+|+|+|+|.+|+||++|+|.|.|++
T Consensus 241 Y~~sG~~~Dw~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~D~~g~pi~~A~V~v~g~~ 320 (376)
T cd03866 241 YPLQGGMQDYNYVWAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVFDSNGNPIPNAIVEVKGRK 320 (376)
T ss_pred EEcCCCchhhhhhhCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEECCCCCccCCeEEEEEcCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ec--eeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCC----ceEEEEEe
Q psy11074 246 KA--VTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTE----SVRLDFML 296 (710)
Q Consensus 246 ~~--~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~----~~~~~~~L 296 (710)
+. ++|+.+|.|++.|+||+|+|++++.||++++ +.|.|..+. +.++||+|
T Consensus 321 ~~~~~~T~~~G~y~~~l~pG~Y~v~vsa~Gy~~~~-~~v~v~~~~~~~~~~~~~~~~ 376 (376)
T cd03866 321 HICPYRTNVNGEYFLLLLPGKYMINVTAPGFKTVI-TNVIIPYNPDNFSALKHDFSL 376 (376)
T ss_pred ceeEEEECCCceEEEecCCeeEEEEEEeCCcceEE-EEEEeCCCCCccceeEeeeeC
Confidence 64 5899999999899999999999999999998 788887543 55666654
No 18
>KOG2650|consensus
Probab=100.00 E-value=7.3e-53 Score=448.25 Aligned_cols=307 Identities=26% Similarity=0.345 Sum_probs=252.1
Q ss_pred cccccCCcc----eeeeecccccccccccccccCCcccccccccCCCccccCCCC----------CCCCCCCCCHHHHHH
Q psy11074 303 SIDQLKNPF----IEIMTLIVPSLSLLLCHVTLSTAADYYFDFDDLTGLEDADSA----------GIDLQRYYNSTELDA 368 (710)
Q Consensus 303 ~~~~~~~p~----v~~~v~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~y~ty~e~~~ 368 (710)
.++||+.|. +++. +.|..+..+.....+..+.+.+-+++++.+++.... .+.+.+||++++|++
T Consensus 52 ~~~fw~~~~~~~~~di~--V~~~~~~~~~~~L~~~~i~~~v~i~d~q~~i~~~~~~~~~~~~~~~~~~~~~Y~~le~I~~ 129 (418)
T KOG2650|consen 52 ELDFWKEPSLVQPVDIL--VPPEDLAAFKAFLKSANISYEVLIEDLQKLIDEERVEVRLRNRRSNDFNWERYHSLEEIYE 129 (418)
T ss_pred eeeeeccCCcCCCceEE--ECHHHHHHHHHHHHhcCCceEEEhhhHHHHHHHHhhhccccccccccccHHHhcCHHHHHH
Confidence 488999887 4444 356666656555556666777777887765554333 377889999999999
Q ss_pred HHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCC
Q psy11074 369 FILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKD 448 (710)
Q Consensus 369 ~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~ 448 (710)
||+.|+.+||+++++..||+|+|||+|.+++|+ .+. ...||.|+|.||+|||||+++.+++++|.+|+..|+++
T Consensus 130 ~l~~l~~~~P~~v~~~~IG~s~EgR~i~~lkIs---~~~---~~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~ 203 (418)
T KOG2650|consen 130 WLDNLAERYPDLVSLIHIGRSYEGRPLKVLKIS---GGD---NRNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRD 203 (418)
T ss_pred HHHHHHHhCCCceEEEEcccccCCceEEEEEec---CCC---CCCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999 221 35799999999999999999999999999999999999
Q ss_pred HHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC------CCCcccCCCCCCCCCcc--------------cC
Q psy11074 449 DRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK------NAHGVDLNRNFPDQFEY--------------EA 508 (710)
Q Consensus 449 ~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~------n~~GvDlNRnf~~~~~~--------------~~ 508 (710)
+.++++|++.+|+|+|++|||||+|+++.+|+ |||+|. .|.||||||||++.|++ ++
T Consensus 204 ~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~R~---WRKnRs~~~~~~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~ 280 (418)
T KOG2650|consen 204 PAVTKLLDKLDWYILPVVNPDGYEYSRTTDRL---WRKNRSPNGCASRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGP 280 (418)
T ss_pred HHHHHHHhcCcEEEEeeecCCcceeeeccccc---ccccCCCCCCCCeeeCCCCCCCccCcCCCCCCCCCCCCccccCCC
Confidence 99999999999999999999999999999999 888875 28999999999999987 24
Q ss_pred CCCChHHHHHHHHHHHhC--CceEEEEecCCcccccccccCCCCCC-C----------------CccccCCcccccccce
Q psy11074 509 KKVYEPETQAIMNFIYSN--PFVLSGNLHGGAVARDYASRNPMMAP-G----------------HACGFDFKDGITNGNY 569 (710)
Q Consensus 509 ~~~sepEt~al~~~~~~~--~~~~~~~lH~~~~~~~y~~~~~~~~~-~----------------~~~~~~~~~g~~~~~~ 569 (710)
+++|||||+||.+|+.+. ++.++|+|||+++...|+..+..... . ..++..|..|. .+..
T Consensus 281 ~pfSEpEt~av~~fi~~~~~~i~~yislHSYsQ~llyPyg~~~~~~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~-~~~~ 359 (418)
T KOG2650|consen 281 SPFSEPETRAVRDFITSFENNIKAYISLHSYSQLLLYPYGYTNDLPEDYEDLQEVARAAADALKSVYGTKYTVGS-SADT 359 (418)
T ss_pred CCCCcHHHHHHHHHHHhcCcceEEEEEecccceeEEecccccCCCCCCHHHHHHHHHHHHHHHHHHhCCEEEecc-ccce
Confidence 568999999999999987 47999999999996666655422111 1 11225677774 3567
Q ss_pred EEeecCchhhhccc-cCCeEEEEEEecC----CCCCCchhhHHHHHHhhhhhhhhhh
Q psy11074 570 WYKVTGGMQDFNYV-HSNCFEITMELSC----CKYPKASDLKHYWAANKESLIKLIE 621 (710)
Q Consensus 570 ~y~~~G~~~D~~y~-~~~~~~~T~Elg~----~~~p~~~~l~~~w~~n~~~ll~~i~ 621 (710)
.|+++|++.||+|. .+..++||+||++ ++.+|+.+|.+..++-..++..+++
T Consensus 360 ~y~asG~S~Dway~~~gi~~~ft~ELrd~g~~GF~LP~~~I~pt~~Et~~~i~~i~~ 416 (418)
T KOG2650|consen 360 LYPASGGSDDWAYDVLGIPYAFTFELRDTGRYGFLLPASQIIPTAKETWAGIKAIAE 416 (418)
T ss_pred eeccCCchHHHhhhccCCCEEEEEEeccCCCCCccCChHHhhhhHHHHHHHHHHHHh
Confidence 89999999999997 7788999999983 3558888888777776666665554
No 19
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=5e-51 Score=441.38 Aligned_cols=248 Identities=50% Similarity=0.905 Sum_probs=230.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||+|+||.++|++|+++||+++++.+||+|+|||+|++++||++ +......||.|+++|+||||||+|++++++|++
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~l~~iG~S~eGR~i~~l~is~~---~~~~~~~kp~v~~~~~iH~~E~ig~~~~l~l~~ 77 (372)
T cd03868 1 YHHYEELTDLLHSLAKKYPNIARLHSIGRSVEGRELWVLRITDN---VNRREPGEPMFKYVGNMHGDETVGRQVLIYLAQ 77 (372)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeccccCCCceEEEEEEecC---CCCCCCCCCeEEEECCcCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987 444456799999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC-----------C-----CCcC--------------------
Q psy11074 126 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN-----------L-----NTKQ-------------------- 169 (710)
Q Consensus 126 ~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~-----------~-----NR~~-------------------- 169 (710)
+||++|..|+++++||++++|+|||++|||||+++++++ | ||+.
T Consensus 78 ~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~~~~~~~R~n~~GvDLNRnf~~~~~~~~~~~~~sepEt~a 157 (372)
T cd03868 78 YLLENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGDCSCGGYGGRENANNVDLNRNFPDQFEGKLQRLSERQPETVA 157 (372)
T ss_pred HHHHhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccCccccCCCccCCCCCccCCCCCCcccCCcCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999975443 3 6610
Q ss_pred ------------------------------------------C-------------------------------------
Q psy11074 170 ------------------------------------------K------------------------------------- 170 (710)
Q Consensus 170 ------------------------------------------p------------------------------------- 170 (710)
|
T Consensus 158 v~~~~~~~~~~l~~~lH~~~~~~~yP~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~~G~~~ 237 (372)
T cd03868 158 MMKWIRSNPFVLSGNLHGGSVVASYPYDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTGKPCCEGETFKDGITN 237 (372)
T ss_pred HHHHHhhCCcEEEEEccCccEEEeccccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCCCCCCccccCCCCccc
Confidence 0
Q ss_pred ---------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEEcCCCCCCCCcEEEE
Q psy11074 171 ---------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITV 241 (710)
Q Consensus 171 ---------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~d~~g~pi~~A~i~v 241 (710)
+|+||.|.+++|+++|+|++|||||++++|+..|+.|++++..++.+++.+|+|+|+|++|+|+++|+|.|
T Consensus 238 ~~~~Y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~~i~G~V~d~~g~pv~~A~V~v 317 (372)
T cd03868 238 GAHWYDVPGGMQDYNYLHSNCFEITLELSCCKYPPASELPEEWNNNRESLLAYLEQVHIGVKGFVRDASGNPIEDATIMV 317 (372)
T ss_pred CceeeeCCCCcchhhhhccCeeEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhCCceEEEEEcCCCCcCCCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEe
Q psy11074 242 RWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFML 296 (710)
Q Consensus 242 ~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L 296 (710)
+|.++.++|+.+|.|++.|+||+|+|++++.||++++...+.|..++.+.++|+|
T Consensus 318 ~~~~~~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~~~~~~~~L 372 (372)
T cd03868 318 AGIDHNVTTAKFGDYWRLLLPGTYTITAVAPGYEPSTVTDVVVKEGEATSVNFTL 372 (372)
T ss_pred EecccceEeCCCceEEecCCCEEEEEEEEecCCCceEEeeEEEcCCCeEEEeeEC
Confidence 9999999999999998789999999999999999998666788889988899876
No 20
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=2.7e-50 Score=436.59 Aligned_cols=247 Identities=39% Similarity=0.755 Sum_probs=227.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||+|+||.+||++|+++||+++++++||+|+|||+|++++||.+ +......||+|++.||||||||+|++++++|++
T Consensus 1 y~~y~ei~~~l~~la~~~p~~~~~~~iG~S~EGR~i~~l~is~~---~~~~~~~kp~v~i~~giHg~E~ig~~~~~~l~~ 77 (395)
T cd03867 1 HHSYSQMVSVLKRTAARCSHIARTYSIGRSFEGRDLLVIEFSSN---PGQHELLEPEVKYIGNMHGNEVLGRELLIYLAQ 77 (395)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEccccCCCceEEEEEeccC---CCcccccCCeEEEEccccCCcHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999986 444445699999999999999999999999999
Q ss_pred HHHHhc-CCChHHHHhhcceEEEEEeccCchhhhhhhcCC------------C-----CCc-------------------
Q psy11074 126 YLVLKD-GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN------------L-----NTK------------------- 168 (710)
Q Consensus 126 ~L~~~y-~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~------------~-----NR~------------------- 168 (710)
+||.+| ..|+++++||++++|+|||++||||++++++.+ | ||+
T Consensus 78 ~L~~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R~n~~GvDLNRNf~~~~~~~~~~~~~~g~~~ 157 (395)
T cd03867 78 FLCSEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGRQNAQNIDLNRNFPDLTSEVYRRRRQRGART 157 (395)
T ss_pred HHHHhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCCcCCCCcccccCCCcchhhhcchhhcccccc
Confidence 999998 478999999999999999999999999864322 2 551
Q ss_pred --------------C------------------------------C----------------------------------
Q psy11074 169 --------------Q------------------------------K---------------------------------- 170 (710)
Q Consensus 169 --------------~------------------------------p---------------------------------- 170 (710)
+ |
T Consensus 158 ~~~p~p~~~~~~~sepEt~Av~~~~~~~~~~l~~s~Hs~~~~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~ 237 (395)
T cd03867 158 DHIPIPDSYWFGKVAPETKAVMKWMRSIPFVLSASLHGGDLVVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHP 237 (395)
T ss_pred cCCCCccccccCccCHHHHHHHHHHhhCCceEEEEccCcceeEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCc
Confidence 0 0
Q ss_pred -------------------------------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHh
Q psy11074 171 -------------------------------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVH 219 (710)
Q Consensus 171 -------------------------------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~ 219 (710)
+|+||+|.+++|+++|+|++||+||+++++.+.|+.|++++..++.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~g~i~~ga~~Y~~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~~~ 317 (395)
T cd03867 238 TMSDRSTRRCGGNFHKRGGIINGAEWYSFSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEMVH 317 (395)
T ss_pred cccCCCCCCCccccccCCCceecceeeEcCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCC--CCceEEEEEe
Q psy11074 220 RGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPD--TESVRLDFML 296 (710)
Q Consensus 220 ~gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~--~~~~~~~~~L 296 (710)
.+|+|+|+|++|+||++|+|.|+|++++++||.+|.|++.|++|+|+|++++.||++++ ++|.|.. +++..+||+|
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~~~-~~v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYWRLLPPGIHIVSAQAPGYTKVM-KRVTLPARMKRAGRVDFVL 395 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEEEecCCCcEEEEEEecCeeeEE-EEEEeCCcCCCceEeeeEC
Confidence 99999999999999999999999999999999999999889999999999999999999 7899865 6778889886
No 21
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=100.00 E-value=3.3e-50 Score=419.54 Aligned_cols=257 Identities=23% Similarity=0.299 Sum_probs=220.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHH
Q psy11074 356 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMV 435 (710)
Q Consensus 356 ~~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l 435 (710)
++.+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ +++ ..||.|+|.||+|||||+|+++++
T Consensus 2 ~~~~Y~~~~ei~~~l~~L~~~~p~~v~~~~iG~S~eGR~I~~l~is---~~~----~~kp~v~i~~giHarE~i~~~~~l 74 (301)
T cd03870 2 NYATYHTLDEIYDFMDLLVAEHPNLVSKLQIGRSYEGRPIYVLKFS---TGG----SNRPAIWIDAGIHSREWITQATGV 74 (301)
T ss_pred CccccCCHHHHHHHHHHHHHHCCCceEEEecccCCCCCeEEEEEEe---cCC----CCCceEEEeccccccchhhHHHHH
Confidence 4779999999999999999999999999999999999999999999 332 268999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc----
Q psy11074 436 FLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY---- 506 (710)
Q Consensus 436 ~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~---- 506 (710)
+++++|+.+|+.|+.++++|++++|+|||++|||||+++++.+|+ |||+|. +|.||||||||++.|+.
T Consensus 75 ~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~---wrknr~~~~~~~~~GVDLNRNf~~~w~~~g~s 151 (301)
T cd03870 75 WFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRL---WRKTRSVTSGSLCVGVDPNRNWDAGFGGAGAS 151 (301)
T ss_pred HHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccce---eecCCCCCCCCCccccccccCCCcccCcCCCC
Confidence 999999999999999999999999999999999999999999999 988876 69999999999999974
Q ss_pred ---------cCCCCChHHHHHHHHHHHhC-CceEEEEecCCcccccccccCCCCC--CCC-------c--------cccC
Q psy11074 507 ---------EAKKVYEPETQAIMNFIYSN-PFVLSGNLHGGAVARDYASRNPMMA--PGH-------A--------CGFD 559 (710)
Q Consensus 507 ---------~~~~~sepEt~al~~~~~~~-~~~~~~~lH~~~~~~~y~~~~~~~~--~~~-------~--------~~~~ 559 (710)
++.++|||||+||++|+.+. ++.+++++||+++...|+..+.... ... . .+..
T Consensus 152 ~~p~~~~Y~G~~pfSEpEt~av~~~~~~~~~~~~~l~lHS~g~~i~yP~~~~~~~~~~~~~~~~la~~~~~ai~~~~g~~ 231 (301)
T cd03870 152 SNPCSETYHGPYANSEVEVKSIVDFVKSHGNFKAFISIHSYSQLLLYPYGYTTQSIPDKTELNQVAKSAVAALKSLYGTS 231 (301)
T ss_pred CCCCccccCCCCCCccHHHHHHHHHHhhCCCeEEEEEeccCCceEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 24568999999999999987 6999999999999665554332111 100 0 0145
Q ss_pred CcccccccceEEeecCchhhhccccCCeEEEEEEecCC----CCCCchhhHHHHHHhhhhhhhhhhcc
Q psy11074 560 FKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCC----KYPKASDLKHYWAANKESLIKLIENV 623 (710)
Q Consensus 560 ~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~----~~p~~~~l~~~w~~n~~~ll~~i~q~ 623 (710)
|..|... ..+|+++|++.||+|..+++++||+||+++ +.+|+++|.+.-++....+..+++++
T Consensus 232 y~~g~~~-~~~y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lP~~~i~p~~~E~~~~i~~~~~~~ 298 (301)
T cd03870 232 YKYGSII-TTIYQASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGLLTIMEHT 298 (301)
T ss_pred ccccccc-ceeecCCCChhhhhhcCCCcEEEEEEeCCCCCCCCCCChHHCchhhHHHHHHHHHHHHHH
Confidence 6666654 578999999999999999999999999973 45888999888888888877776544
No 22
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=100.00 E-value=1.9e-50 Score=420.64 Aligned_cols=256 Identities=21% Similarity=0.303 Sum_probs=217.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHH
Q psy11074 356 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMV 435 (710)
Q Consensus 356 ~~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l 435 (710)
.+++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ ++ ...||.|+++||+|||||+|+++++
T Consensus 2 ~~~~Y~~~~ei~~~l~~la~~~p~~v~~~~IG~S~eGR~i~~l~i~---~~----~~~kp~v~i~~giHarE~i~~~~~l 74 (300)
T cd03871 2 SYEKYNNWETIEAWTEQVASENPDLISRSQIGTTFEGRPIYLLKVG---KP----GVNKPAIFMDCGFHAREWISPAFCQ 74 (300)
T ss_pred CccccCCHHHHHHHHHHHHHHCCCceEEEEeeeCCCCCeeEEEEEc---cC----CCCCCeEEEeccccccccccHHHHH
Confidence 4679999999999999999999999999999999999999999999 32 2468999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc----
Q psy11074 436 FLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY---- 506 (710)
Q Consensus 436 ~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~---- 506 (710)
+++++|+.+|++++.+++||++++|+|||++|||||+++++.+|+ |||+|. +|.|||||||||+.|+.
T Consensus 75 ~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~---wrknr~~~~~~~c~GVDLNRNf~~~w~~~g~s 151 (300)
T cd03871 75 WFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRM---WRKTRSTNAGSSCIGTDPNRNFNAGWCTVGAS 151 (300)
T ss_pred HHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHH---HHHhcCCCCCCCccccccCcCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999999999 888875 36899999999999974
Q ss_pred ---------cCCCCChHHHHHHHHHHHhCC--ceEEEEecCCcccccccccCC--CCCC-------CCc--------ccc
Q psy11074 507 ---------EAKKVYEPETQAIMNFIYSNP--FVLSGNLHGGAVARDYASRNP--MMAP-------GHA--------CGF 558 (710)
Q Consensus 507 ---------~~~~~sepEt~al~~~~~~~~--~~~~~~lH~~~~~~~y~~~~~--~~~~-------~~~--------~~~ 558 (710)
++.++|||||+||++|+.+.+ +.+++++|++++...|+..+. .... +.. ...
T Consensus 152 ~~pc~~~Y~G~~p~SEpEt~Al~~~~~~~~~~~~~~l~~HSyg~~i~~Py~~~~~~~~~~~~~~~la~~~~~ai~~~~g~ 231 (300)
T cd03871 152 RNPCDETYCGSAPESEKETKALADFIRNNLSSIKAYLTIHSYSQMLLYPYSYTYKLPENHAELNSVAKGAVKELASLYGT 231 (300)
T ss_pred CCCCCCCcCCCCCCCCHHHHHHHHHHHhcCcceeEEEEeccCccEEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 245689999999999999974 688999999999555543321 1111 100 013
Q ss_pred CCcccccccceEEeecCchhhhccccCCeEEEEEEecCC----CCCCchhhHHHHHHhhhhhhhhhhc
Q psy11074 559 DFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCC----KYPKASDLKHYWAANKESLIKLIEN 622 (710)
Q Consensus 559 ~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~----~~p~~~~l~~~w~~n~~~ll~~i~q 622 (710)
.|..|.. ++.+|+++|++.||+|..+++++||+||+|. +.+|.++|...+++....+..++..
T Consensus 232 ~y~~g~~-~~~~Y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~ 298 (300)
T cd03871 232 KYTYGPG-ATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFLLPESQIKPTCEETMLAVKYIANY 298 (300)
T ss_pred CCcCCcc-ccccccCCCCHHHHHhcCCCcEEEEEEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHh
Confidence 4555543 5689999999999999999999999999863 4477899999999988887776543
No 23
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=100.00 E-value=6.4e-50 Score=415.72 Aligned_cols=256 Identities=19% Similarity=0.243 Sum_probs=218.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHH
Q psy11074 357 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVF 436 (710)
Q Consensus 357 ~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~ 436 (710)
+++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ +.. ...||.|++.||+|||||+|++++++
T Consensus 1 ~~~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EgR~I~~l~i~---~~~---~~~k~~i~i~~giHarEwi~~~~~l~ 74 (298)
T cd06247 1 YTKYHPMDEIYNWMDQIKEKYSELVSQHYLGCTYELRPMYYLKIG---WPS---DKPKKIIWMDCGIHAREWISPAFCQW 74 (298)
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCcEEEEeceECcCCceEEEEEee---cCC---CCCCcEEEEeccccccccccHHHHHH
Confidence 468999999999999999999999999999999999999999999 321 24589999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc-----
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY----- 506 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~----- 506 (710)
++++|+.+|..++.+++||++++|+|||++|||||+++++++|+ |||+|. +|.||||||||+++|+.
T Consensus 75 ~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~---wRknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~ 151 (298)
T cd06247 75 FVKEILQNYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTDRL---WRKNRSPHNNGTCYGVDLNRNFNSQWCSIGASR 151 (298)
T ss_pred HHHHHHHHhccCHHHHHHHhcCeEEEEeeecCCcceEEecccce---ecccCCCCCCCCccccccccCCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999 888885 68999999999999975
Q ss_pred --------cCCCCChHHHHHHHHHHHhCCc--eEEEEecCCcccccccccCCCCCC---------CCc--------cccC
Q psy11074 507 --------EAKKVYEPETQAIMNFIYSNPF--VLSGNLHGGAVARDYASRNPMMAP---------GHA--------CGFD 559 (710)
Q Consensus 507 --------~~~~~sepEt~al~~~~~~~~~--~~~~~lH~~~~~~~y~~~~~~~~~---------~~~--------~~~~ 559 (710)
++.++|||||+||++|+.+.++ .+++|+|++++...|+..+..... +.. ....
T Consensus 152 ~p~~~~y~G~~pfSEpEt~ai~~~~~~~~~~i~~~l~~Hsyg~~i~~P~g~~~~~~~n~~~~~~~a~~~~~ai~~~~~~~ 231 (298)
T cd06247 152 NCRSNIFCGTGPESEPETKAVARLIESKKSDILCYLTIHSYGQLILLPYGYTKEPSSNHEEMMLVAQKAAAALKEKHGTE 231 (298)
T ss_pred CCCCCCcCCCCCCCcHHHHHHHHHHHhcCcceEEEEEeccCCCeEEeCCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2346899999999999999864 569999999996655543321111 100 0145
Q ss_pred CcccccccceEEeecCchhhhccccCCeEEEEEEecC----CCCCCchhhHHHHHHhhhhhhhhhhc
Q psy11074 560 FKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSC----CKYPKASDLKHYWAANKESLIKLIEN 622 (710)
Q Consensus 560 ~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~----~~~p~~~~l~~~w~~n~~~ll~~i~q 622 (710)
|..|.. ...+|+++|++.||+|..+.+++||+||++ ++.||+++|.+..++...++..+++.
T Consensus 232 y~~g~~-~~~~y~a~G~s~Dwa~~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~ 297 (298)
T cd06247 232 YRVGSS-ALILYSNSGSSRDWAVDIGIPFSYTFELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVEY 297 (298)
T ss_pred CccCCc-ccccccCCCChhhhhhccCCCEEEEEEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHhh
Confidence 666665 356799999999999988888999999986 45599999999999998888877654
No 24
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=100.00 E-value=1.1e-49 Score=415.99 Aligned_cols=256 Identities=20% Similarity=0.259 Sum_probs=217.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHH
Q psy11074 357 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVF 436 (710)
Q Consensus 357 ~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~ 436 (710)
+++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ +++ ...||.|+|.||+|||||+|++++++
T Consensus 2 ~~~Y~~~~ei~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is---~~~---~~~k~~v~i~~giHarE~i~~~~~l~ 75 (300)
T cd06246 2 YEQYHSLNEIYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVS---GKE---QTAKNAIWIDCGIHAREWISPAFCLW 75 (300)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEe---CCC---CCCCCeEEEecccCccchhhHHHHHH
Confidence 578999999999999999999999999999999999999999999 332 24699999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc-----
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY----- 506 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~----- 506 (710)
++++|+..|+.++.+++||++++|+|||++|||||+++++++++ |||+|. +|.|||||||||+.|+.
T Consensus 76 ~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~---wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~ 152 (300)
T cd06246 76 FVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRM---WRKNRSFYANSHCIGTDLNRNFDAKWCCEGASS 152 (300)
T ss_pred HHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccce---eecCCCCCCCCCccCcccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999 998985 68999999999999975
Q ss_pred --------cCCCCChHHHHHHHHHHHhCC--ceEEEEecCCcccccccccCCC--CCC-------CCc--------cccC
Q psy11074 507 --------EAKKVYEPETQAIMNFIYSNP--FVLSGNLHGGAVARDYASRNPM--MAP-------GHA--------CGFD 559 (710)
Q Consensus 507 --------~~~~~sepEt~al~~~~~~~~--~~~~~~lH~~~~~~~y~~~~~~--~~~-------~~~--------~~~~ 559 (710)
++.++|||||+||++|+.+++ +.+++++|++++...|+..+.. ... +.. ....
T Consensus 153 ~p~~~~y~G~~p~SEpEt~av~~~~~~~~~~i~~~is~Hs~g~~i~~P~~~~~~~~~~~~~~~~la~~~~~ai~~~~~~~ 232 (300)
T cd06246 153 SSCSETYCGPYPESEPEVKAVASFLRRHINQIKAYISMHSYSQMILFPYSYTRSKSKDHEELSLLAKEAVRAIRRTSNNR 232 (300)
T ss_pred CCCCCCcCCCCCCccHHHHHHHHHHHhCCcceeEEEEeccCCcEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 234679999999999999985 6789999999985555433211 111 100 0134
Q ss_pred CcccccccceEEeecCchhhhccccCCeEEEEEEecCC----CCCCchhhHHHHHHhhhhhhhhhhc
Q psy11074 560 FKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCC----KYPKASDLKHYWAANKESLIKLIEN 622 (710)
Q Consensus 560 ~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~----~~p~~~~l~~~w~~n~~~ll~~i~q 622 (710)
|..|.. ...+|.++|++.||+|..+++++||+||+++ +.+|+++|....++....+..++.+
T Consensus 233 y~~g~~-~~~~Y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~ 298 (300)
T cd06246 233 YTHGSG-AETIYLAPGGSDDWAYDLGIKYSFTFELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWH 298 (300)
T ss_pred CeecCC-CCeeeccCCChhhHhhcCCCCEEEEEEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHh
Confidence 555543 3468999999999999999999999999874 4588999998888888887776654
No 25
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=100.00 E-value=2.8e-49 Score=414.95 Aligned_cols=250 Identities=28% Similarity=0.445 Sum_probs=214.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHH
Q psy11074 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFL 437 (710)
Q Consensus 358 ~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l 437 (710)
..||+|+||.++|++|+++||+++++.+||+|++||+|++++|+ +++. ....||.|+|+|++||+||+|+++++++
T Consensus 2 ~~y~~y~ei~~~l~~l~~~~p~~v~~~~iG~S~eGR~i~~l~i~---~~~~-~~~~kp~i~i~~~iH~~E~~g~~~~l~~ 77 (295)
T cd03859 2 RGYHNYLEMVDELNAAAAAYPNLTKVKSIGKSYEGRDIIAVKIS---DNVA-TDENKPEVLYTSTHHAREWLSLEMAIYL 77 (295)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEeeeecCCCCeEEEEEEe---cCCC-CCCCCCEEEEECCcCccchhhHHHHHHH
Confidence 47999999999999999999999999999999999999999999 4332 2356999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhccc--CCCCCCCCCCCC-------CCCCcccCCCCCCCCCcc--
Q psy11074 438 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE--GKCDSLDGYVGR-------KNAHGVDLNRNFPDQFEY-- 506 (710)
Q Consensus 438 ~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~--~~~~~~~~~~~R-------~n~~GvDlNRnf~~~~~~-- 506 (710)
+++||.+|..|+.+++||++++|+|||++||||++++++ .+++ ||++| .||.|||||||||++|+.
T Consensus 78 i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~---wrkn~~~~~~~~~~~~GvDLNRNf~~~w~~~~ 154 (295)
T cd03859 78 MHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRS---WRKNRRDNSGDISSSDGVDLNRNYGYKWGYDS 154 (295)
T ss_pred HHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccc---eeccCCCCCCCcCcceeecCCCCCCcccCCCC
Confidence 999999998899999999999999999999999999988 7777 88886 478999999999999964
Q ss_pred -------------cCCCCChHHHHHHHHHHHhC-CceEEEEecCCcccccccccCCCCC----CC--------Cccc--c
Q psy11074 507 -------------EAKKVYEPETQAIMNFIYSN-PFVLSGNLHGGAVARDYASRNPMMA----PG--------HACG--F 558 (710)
Q Consensus 507 -------------~~~~~sepEt~al~~~~~~~-~~~~~~~lH~~~~~~~y~~~~~~~~----~~--------~~~~--~ 558 (710)
++.++|||||+||++|+.++ ++.+++|+|+++....|+..+.... .. .... .
T Consensus 155 ~g~s~~p~~~~y~G~~p~sepEt~av~~~~~~~~~~~~~l~~Hs~g~~i~~P~~~~~~~~~~~~d~~~~~~la~~~~~~~ 234 (295)
T cd03859 155 GGSSNDPSSETYRGPSAFSEPETQAIRDFVESHKNIKTALNYHTYSNLWLYPYGYQYNEPMPSKDEIDFVALGGTMAESN 234 (295)
T ss_pred CCCCCCCCCCCccCCCCCchHHHHHHHHHHHhCCCeEEEEEeecCCceEEeCCcCCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 23467999999999999999 9999999999998655554332111 00 0000 2
Q ss_pred CCcccccccceEEeecCchhhhccccCCeEEEEEEecC-----CCCCCchhhHHHHHHhhhhh
Q psy11074 559 DFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSC-----CKYPKASDLKHYWAANKESL 616 (710)
Q Consensus 559 ~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~-----~~~p~~~~l~~~w~~n~~~l 616 (710)
.|..|. ...+|++.|++.||+|.+.++++||+||++ +++|+.++|..+|++|+++|
T Consensus 235 ~y~~~~--~~~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~~~gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 235 GYTPKV--SSDLYTANGDADDWMYGRHKIISLTPEMGPESGGTGFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred CCcccC--cceeEecCCchHHHHhhCCCcEEEEEEeCCCCCCCCCcCCHHHHHHHHHhccCCC
Confidence 345454 356899999999999999999999999998 45899999999999999764
No 26
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=100.00 E-value=4.3e-49 Score=413.67 Aligned_cols=258 Identities=22% Similarity=0.299 Sum_probs=219.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHH
Q psy11074 357 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVF 436 (710)
Q Consensus 357 ~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~ 436 (710)
+++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ ++++. ...||.|+++|++|||||+|++++++
T Consensus 1 ~~~Y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~I~---~~~~~-~~~k~~v~i~~giHarE~~~~~~~l~ 76 (304)
T cd06248 1 FDSYHPLEDHLQWLRDLQAAFPNNSELFTIGKSYEGRTILGLHIW---GSGGE-KGSKPAIVIHGTVHAREWISTMTVEY 76 (304)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCceEEeceEECCCCCeEEEEEEe---cCCCC-CCCCcEEEEECCcCcCccccHHHHHH
Confidence 468999999999999999999999999999999999999999999 33321 34689999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc-----
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY----- 506 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~----- 506 (710)
++++|+++|..|+.++.||++++|+|||++||||++++++++++ ||++|. +|.|||||||||..|+.
T Consensus 77 ~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~---wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~ 153 (304)
T cd06248 77 LAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRL---WRKNRQPTSGSSCVGTDLNRNWPYKWDGGGSST 153 (304)
T ss_pred HHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhh---hhhcCCCCCCCCceeecCCCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999 998885 58999999999999974
Q ss_pred --------cCCCCChHHHHHHHHHHHhC----CceEEEEecCCcccccccccCCC--CCC--------CCc--------c
Q psy11074 507 --------EAKKVYEPETQAIMNFIYSN----PFVLSGNLHGGAVARDYASRNPM--MAP--------GHA--------C 556 (710)
Q Consensus 507 --------~~~~~sepEt~al~~~~~~~----~~~~~~~lH~~~~~~~y~~~~~~--~~~--------~~~--------~ 556 (710)
++.++|||||+||++|+.++ ++.+++|+|++++...|+..+.. .+. +.. .
T Consensus 154 ~p~s~~Y~G~~~~sEpEt~av~~~~~~~~~~~~~~~~l~~Hs~~~~i~~P~~~~~~~~~~d~~~~~~la~~~a~ai~~~~ 233 (304)
T cd06248 154 NPCSETYRGESPGDAPEAKALAAFLNKLAEGQGIVGYIDWHSYSQLILYPYGYSCDAVPPNLENLEELAAGLAKAIRAVS 233 (304)
T ss_pred CCCCCCcCCCCCCccHHHHHHHHHHHhccccCceEEEEEeccCcceEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 23468999999999999997 49999999999985544433321 110 110 1
Q ss_pred ccCCcccccccceEEeecCchhhhccccCC-eEEEEEEecC----CCCCCchhhHHHHHHhhhhhhhhhhc
Q psy11074 557 GFDFKDGITNGNYWYKVTGGMQDFNYVHSN-CFEITMELSC----CKYPKASDLKHYWAANKESLIKLIEN 622 (710)
Q Consensus 557 ~~~~~~g~~~~~~~y~~~G~~~D~~y~~~~-~~~~T~Elg~----~~~p~~~~l~~~w~~n~~~ll~~i~q 622 (710)
...|..|... +.+|+++|++.||+|.+.+ +++||+|+++ ++.+|+++|.+..++....+..++..
T Consensus 234 g~~y~~g~~~-~~~y~~~G~~~D~~y~~~gi~~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~~ 303 (304)
T cd06248 234 GTTYTVGPAC-NTLYQTTGSSVDWVYHVAGAAWSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLKF 303 (304)
T ss_pred CCCCcccccc-cccccCCCCcchhhhccCCCcEEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHhh
Confidence 1346666533 6789999999999998877 8999999976 45688999999999998888877653
No 27
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=100.00 E-value=1.5e-48 Score=405.21 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 359 ~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
.||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ ++. ...||.|+|.||+|||||+|++++++++
T Consensus 1 ~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EGR~i~~l~i~---~~~---~~~k~~i~i~~giHarEwi~~~~~~~~i 74 (300)
T cd03872 1 VYHPLEEIESWMFYMNKTHSDLVHLFSIGKSYEGRSLYVLKLG---KRT---RSYKKAVWIDCGIHAREWIGPAFCQWFV 74 (300)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEEe---cCC---CCCCCeEEEecccccccccCHHHHHHHH
Confidence 3999999999999999999999999999999999999999999 322 1368999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC-----CCCcccCCCCCCCCCcc-------
Q psy11074 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK-----NAHGVDLNRNFPDQFEY------- 506 (710)
Q Consensus 439 ~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~-----n~~GvDlNRnf~~~~~~------- 506 (710)
++|+.+|..|+.+++||++++|+|||++|||||+++++++|+ |||+|. +|.||||||||++.|+.
T Consensus 75 ~~Ll~~~~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~---wrknR~~~~~~~c~GVDLNRNf~~~w~~~g~s~~P 151 (300)
T cd03872 75 KEALNSYQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRF---WRKTRSKNSRYQCRGVDANRNWKVKWCDEGASLHP 151 (300)
T ss_pred HHHHHhccCChHHHHHHhhCeEEEEeeecCCcceeeeccchh---hhccCCCCCCCCccccccccccCcccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999 888865 48999999999999975
Q ss_pred ------cCCCCChHHHHHHHHHHHhC--CceEEEEecCCcccccccccCC--CCCCCC-------c--------cccCCc
Q psy11074 507 ------EAKKVYEPETQAIMNFIYSN--PFVLSGNLHGGAVARDYASRNP--MMAPGH-------A--------CGFDFK 561 (710)
Q Consensus 507 ------~~~~~sepEt~al~~~~~~~--~~~~~~~lH~~~~~~~y~~~~~--~~~~~~-------~--------~~~~~~ 561 (710)
++.++|||||+||++|+.++ ++.+++|+|++++...|+..+. ..+.-. . ....|.
T Consensus 152 cs~~Y~G~~pfSEpEt~al~~~~~~~~~~i~~~ls~Hsyg~~i~~P~g~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~Y~ 231 (300)
T cd03872 152 CDDTYCGPFPESEPEVKAVAQFLRKHRKHVRAYLSFHAYAQMLLYPYSYKYATIPNFGCVESAAYNAVNALQSAYGVRYR 231 (300)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhCCccceEEEEEccCCcEEEecCCCcCCCCCChHHHHHHHHHHHHHHHHhhCCCCc
Confidence 23468999999999999997 5788999999999555554331 111100 0 014566
Q ss_pred ccccccceEEeecCchhhhccccCCeEEEEEEecCC----CCCCchhhHHHHHHhhhhhhhhhhcc
Q psy11074 562 DGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCC----KYPKASDLKHYWAANKESLIKLIENV 623 (710)
Q Consensus 562 ~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~----~~p~~~~l~~~w~~n~~~ll~~i~q~ 623 (710)
.|.. ...+|.++|++.||+|..+..++||+||+.. +.+|+++|.+..++...++..++.++
T Consensus 232 ~g~~-~~~lY~a~G~s~Dw~y~~~i~~s~t~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 296 (300)
T cd03872 232 YGPA-SSTLYVSSGSSMDWAYKNGIPYAFAFELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHL 296 (300)
T ss_pred ccCc-ccceecCCCCHHHHhhcCCCcEEEEEEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHH
Confidence 6654 3467999999999999877778999999863 45889999888888888888777654
No 28
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=100.00 E-value=1.9e-46 Score=388.78 Aligned_cols=235 Identities=24% Similarity=0.301 Sum_probs=194.6
Q ss_pred CCCcEEEEEccccc------CCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHH
Q psy11074 377 YPHLVRAETIGKSV------QGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR 450 (710)
Q Consensus 377 ~p~~~~~~~iG~S~------eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~ 450 (710)
||+++++.+||+|+ +||+|++|+|++...++ ....||.|+|.|++|||||+|++++|+++++|+.+|..+++
T Consensus 1 ~p~~~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~--~~~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~ 78 (293)
T cd06226 1 YPNLAQWVDIGDSWDKPGGPAGYDIRALKLTNKATNS--PTGPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDAD 78 (293)
T ss_pred CCcceEEEEeeEecccCcccCCceEEEEEEecCCCCc--CCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHH
Confidence 79999999999999 99999999999322111 34579999999999999999999999999999999989999
Q ss_pred HHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC---------CCCcccCCCCCCCCCcc--------------c
Q psy11074 451 ITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK---------NAHGVDLNRNFPDQFEY--------------E 507 (710)
Q Consensus 451 ~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~---------n~~GvDlNRnf~~~~~~--------------~ 507 (710)
+++||++++|+|||++|||||+++++ +++ ||++|. |+.|||||||||+.|+. +
T Consensus 79 v~~lL~~~~i~ivP~~NPDG~~~~~~-~~~---wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G 154 (293)
T cd06226 79 ATWLLDYHEIHVVPIVNPDGRKIAEQ-GLS---QRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASSGDPCSETYRG 154 (293)
T ss_pred HHHHHhcCeEEEEecccCCcceeecc-Ccc---eeccCCCCCCCCccccccccccccCCCCcCCcCCCCCCCCCCCCcCC
Confidence 99999999999999999999999865 566 777764 46899999999999964 2
Q ss_pred CCCCChHHHHHHHHHHHhCC----------------ceEEEEecCCcccccccccCCCCCC---------CCccc--cCC
Q psy11074 508 AKKVYEPETQAIMNFIYSNP----------------FVLSGNLHGGAVARDYASRNPMMAP---------GHACG--FDF 560 (710)
Q Consensus 508 ~~~~sepEt~al~~~~~~~~----------------~~~~~~lH~~~~~~~y~~~~~~~~~---------~~~~~--~~~ 560 (710)
..++|||||+||++|+.++. +.+++|+|++++...|+..+..... +.... ..|
T Consensus 155 ~~p~SEpEt~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HS~g~~i~~P~g~~~~~~p~~~~~~~la~~~~~~~gy 234 (293)
T cd06226 155 PAPGSEPETAALEDYIRGLFPDQRGPGDTDPAPDDTTGVYLDIHSYSNLVLYPWGWTTQPAPNDTQLRALGRKFASFNGY 234 (293)
T ss_pred CCCCCcHHHHHHHHHHHhccccccccccccccccccceEEEEeccCCCeEeecCcCCCCCCCCHHHHHHHHHHHhhcCCc
Confidence 34689999999999999986 7899999999986555543321111 10000 122
Q ss_pred cccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhh-HHHHHHhhhhhhhh
Q psy11074 561 KDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDL-KHYWAANKESLIKL 619 (710)
Q Consensus 561 ~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l-~~~w~~n~~~ll~~ 619 (710)
.. .....+|+++|++.||+|...++++||+|||+++||+.+++ +.+|.+||++|+.+
T Consensus 235 ~~--~~~~~~Y~~~G~~~Dw~y~~~gi~s~TiElg~~~~~~~~~~~~~~~~~n~~~~~~~ 292 (293)
T cd06226 235 TP--QQSVGLYPTDGTTDDWSYGELGVAAYTFEIGTSFFQSCSSFESGILPDNRPALYYA 292 (293)
T ss_pred cc--cccceEEecCCChhHhHhhcCCceEEEEEccCCCCCCcccccccccccCHHHHhhc
Confidence 21 34567899999999999999999999999999999998766 79999999999864
No 29
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=100.00 E-value=1.1e-45 Score=388.13 Aligned_cols=251 Identities=27% Similarity=0.359 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||||+||.++|++|+++||+++++.+||+|.+||+|++++|+ +.+ ...||.|+|+|++||+|++|+++++++++
T Consensus 1 Y~ty~ei~~~l~~l~~~~p~~~~~~~iG~S~egr~i~~l~i~---~~~---~~~k~~v~i~~~~Hg~E~~g~~~~~~~~~ 74 (294)
T cd03860 1 YHTYDEIYAWLDELAQKYPDLVTVETIGRSYEGRPIKGVKIS---NGG---RSNKPAIFIDAGIHAREWISPATALYIIN 74 (294)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeeeeCCCCCeEEEEEEe---cCC---CCCCcEEEEECCcCcCccccHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 332 35689999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCC-----CCcccCCCCCCCCCcc--------
Q psy11074 440 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKN-----AHGVDLNRNFPDQFEY-------- 506 (710)
Q Consensus 440 ~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n-----~~GvDlNRnf~~~~~~-------- 506 (710)
+|+.++. +.++.||++++|+|||++||||++++++++++ ||++|.+ |.|||||||||..|..
T Consensus 75 ~L~~~~~--~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~---wrknr~~~~~~~~~GvDLNRnf~~~w~~~~~~~~p~ 149 (294)
T cd03860 75 QLVESYD--PEVTDLLDNYDWYILPVANPDGYEYTHTTDRL---WRKNRSPNSGGGCVGVDLNRNFDYHWGGGGASSDPC 149 (294)
T ss_pred HHHHccC--HHHHHHHHcCeEEEEeeecCCchhhhccccch---hcccCCCCCCCCceeeccCCCCCCCCccCCCCCCCC
Confidence 9999654 78999999999999999999999999999999 8888764 7899999999999974
Q ss_pred -----cCCCCChHHHHHHHHHHHhC--CceEEEEecCCcccccccccCCCCC--C-------CCcc--------ccCCcc
Q psy11074 507 -----EAKKVYEPETQAIMNFIYSN--PFVLSGNLHGGAVARDYASRNPMMA--P-------GHAC--------GFDFKD 562 (710)
Q Consensus 507 -----~~~~~sepEt~al~~~~~~~--~~~~~~~lH~~~~~~~y~~~~~~~~--~-------~~~~--------~~~~~~ 562 (710)
+..++|||||+||+++++++ +|++++|+|+++....|+..+.... . +... ...|..
T Consensus 150 ~~~y~G~~~~sepEt~al~~~~~~~~~~~~~~ld~Hs~~~~i~~P~~~~~~~~~d~~~~~~la~~~~~~~~~~~g~~Y~~ 229 (294)
T cd03860 150 SETYAGPSAFSEPETRAVRDFLLSLRGRIKAYLSLHSYGQLILYPWGYTSELPPNYEDLREVAKAAADAIRAVYGTRYTV 229 (294)
T ss_pred CCCccCCCCCchHHHHHHHHHHHhccccEEEEEEeccCCceEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 23467999999999999999 7999999999988554443322110 0 1000 134555
Q ss_pred cccccceEEeecCchhhhccccCC-eEEEEEEecCC----CCCCchhhHHHHHHhhhhhhhhhhc
Q psy11074 563 GITNGNYWYKVTGGMQDFNYVHSN-CFEITMELSCC----KYPKASDLKHYWAANKESLIKLIEN 622 (710)
Q Consensus 563 g~~~~~~~y~~~G~~~D~~y~~~~-~~~~T~Elg~~----~~p~~~~l~~~w~~n~~~ll~~i~q 622 (710)
|.. ...+|++.|++.||+|...+ +++||+||++. ++||.++|..+.++....++.++..
T Consensus 230 g~~-~~~~y~~~G~~~Dw~y~~~~~~~~~t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~~ 293 (294)
T cd03860 230 GSS-AETLYPASGGSDDWAYGVAGIPYSYTLELRDTGRYGFLLPASQIIPTAEETFAGIKAMADE 293 (294)
T ss_pred ccc-cCccccCCCchhhhhhccCCCcEEEEEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHhh
Confidence 544 35789999999999998875 58999999974 5699999999999999998887754
No 30
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=100.00 E-value=1.8e-45 Score=399.91 Aligned_cols=247 Identities=51% Similarity=0.921 Sum_probs=227.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+++ +......||.|+++|++|||||+|++++++|++
T Consensus 1 Y~~y~ei~~~l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~i~~~---~~~~~~~kp~v~i~agiH~~E~~g~~~~~~l~~ 77 (374)
T cd03858 1 YHNYAELESFLKEVAANYPNITRLYSIGKSVQGRDLWVLEISDN---PGVHEPGEPEFKYVGNMHGNEVVGRELLLRLAQ 77 (374)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEcccCCCCCEEEEEEEecC---CCCCCCCCceEEEeccccCCchhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987 434445799999999999999999999999999
Q ss_pred HHHHhcC-CChHHHHhhcceEEEEEeccCchhhhhhhcCCC--------------CCc----------------C-----
Q psy11074 126 YLVLKDG-KDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL--------------NTK----------------Q----- 169 (710)
Q Consensus 126 ~L~~~y~-~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~--------------NR~----------------~----- 169 (710)
+|+.+|. +|+.+++||++++|+|||++||||++++++++| ||+ +
T Consensus 78 ~L~~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~w~~~R~n~~GvDLNRnf~~~~~~~~~~G~~~~sepEt~ 157 (374)
T cd03858 78 YLCENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCGGLTGRYNANGVDLNRNFPDLFFTNYRSSDNGPRQPETK 157 (374)
T ss_pred HHHHHhccCCHHHHHHHhCCEEEEEcccCCchhhhhcccCCcccccCCCCcceecccCCCcccccccccCCCcccCHHHH
Confidence 9999997 899999999999999999999999999654332 551 0
Q ss_pred ------------------------------------------C-------------------------------------
Q psy11074 170 ------------------------------------------K------------------------------------- 170 (710)
Q Consensus 170 ------------------------------------------p------------------------------------- 170 (710)
|
T Consensus 158 al~~~~~~~~~~~~i~~Hs~~~~~~yp~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~~G~ 237 (374)
T cd03858 158 AVMNWIKSIPFVLSANLHGGALVANYPYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGGPCCCNDDEEFPGGI 237 (374)
T ss_pred HHHHHHhhCCceEEEEccCCceEEEcccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCCCCCCcccccCCCCc
Confidence 0
Q ss_pred -----------ccccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEEcCCCCCCCCcEE
Q psy11074 171 -----------RMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAII 239 (710)
Q Consensus 171 -----------g~~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~d~~g~pi~~A~i 239 (710)
+|+||.|..+.|+++|+|++||++|+++++..+|+.+++++..++.+++.+|+|+|+|++|+|+++|+|
T Consensus 238 ~~~~~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l~~~a~~~i~G~V~d~~g~pl~~A~V 317 (374)
T cd03858 238 TNGAAWYSVTGGMQDWNYLHTNCFEITLELSCCKFPPASELPKYWEENREALLAYIEQVHRGIKGFVRDANGNPIANATI 317 (374)
T ss_pred EEcceeeEcCCCchhhhhhccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHHHhhcCCceEEEEECCCCCccCCeEE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCC-CCceEEEEEe
Q psy11074 240 TVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPD-TESVRLDFML 296 (710)
Q Consensus 240 ~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~-~~~~~~~~~L 296 (710)
.|.|...++.||.+|.|.+.+++|+|+|++++.||++++ +.+.+.. ++.++++|+|
T Consensus 318 ~i~~~~~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~~~-~~v~v~~~g~~~~~~~~l 374 (374)
T cd03858 318 SVEGINHDVTTAEDGDYWRLLLPGTYNVTASAPGYEPQT-KSVVVPNDNSAVVVDFTL 374 (374)
T ss_pred EEecceeeeEECCCceEEEecCCEeEEEEEEEcCcceEE-EEEEEecCCceEEEeeEC
Confidence 999999999999999998779999999999999999999 6777776 8888888875
No 31
>smart00631 Zn_pept Zn_pept.
Probab=100.00 E-value=2.4e-44 Score=375.54 Aligned_cols=229 Identities=39% Similarity=0.599 Sum_probs=197.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
||||+||.++|++|+++||+++++.+||+|.+||+|++++|+ +++ ...||.|+|+|++||+|++|+++++++++
T Consensus 1 y~ty~e~~~~l~~l~~~~~~~v~~~~iG~S~~Gr~i~~~~i~---~~~---~~~k~~v~i~a~~Hg~E~~g~~~~~~~i~ 74 (277)
T smart00631 1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKIS---DGG---SHNKPAIFIDAGIHAREWIGPATALYLIN 74 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeceecCCCCceEEEEEe---CCC---CCCCcEEEEECCccccccccHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 332 23589999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC---CCCcccCCCCCCCCCcc----------
Q psy11074 440 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK---NAHGVDLNRNFPDQFEY---------- 506 (710)
Q Consensus 440 ~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~---n~~GvDlNRnf~~~~~~---------- 506 (710)
+|+.+|..++.++.+|++++|+|||++||||+++.++++++ |+++|. |++|||||||||..|+.
T Consensus 75 ~L~~~~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~---wr~~r~~~~~~~GvDLNRnf~~~w~~~~~p~~~~y~ 151 (277)
T smart00631 75 QLLENYGRDPRITKLLDKTDIYIVPVLNPDGYEYTHTGDRL---WRKNRSPNSNCRGVDLNRNFPFHWGKTGNPCSETYA 151 (277)
T ss_pred HHHHhcccCHHHHHHHHcCcEEEEEeecCchhhheeccccc---ccCCCCCCCCCcCcccCCCCCCCCCCCCCCCCCCcC
Confidence 99999988999999999999999999999999999999998 999998 99999999999999865
Q ss_pred cCCCCChHHHHHHHHHHHhC-CceEEEEecCCcccccccccCCCC--CCC--------Ccc--------ccCCccccccc
Q psy11074 507 EAKKVYEPETQAIMNFIYSN-PFVLSGNLHGGAVARDYASRNPMM--APG--------HAC--------GFDFKDGITNG 567 (710)
Q Consensus 507 ~~~~~sepEt~al~~~~~~~-~~~~~~~lH~~~~~~~y~~~~~~~--~~~--------~~~--------~~~~~~g~~~~ 567 (710)
++.++|||||+||++++.++ ++.+++|+|+++....|+..+... ... ... ...|..|...+
T Consensus 152 G~~~~sepEt~ai~~~~~~~~~~~~~id~Hs~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~g~~~~ 231 (277)
T smart00631 152 GPSPFSEPETKAVRDFIRSNRRFVLYIDLHSYSQLILYPYGYTKNDLPPNVDDLDAVAKALAKALASVHGTRYTYGISNG 231 (277)
T ss_pred CCCCCCcHHHHHHHHHHHhcCCeeEEEEeccCCcEEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCccccccccC
Confidence 34568999999999999999 999999999998755554332211 111 000 12366676665
Q ss_pred ceEEeecCchhhhccccCC-eEEEEEEecCCC
Q psy11074 568 NYWYKVTGGMQDFNYVHSN-CFEITMELSCCK 598 (710)
Q Consensus 568 ~~~y~~~G~~~D~~y~~~~-~~~~T~Elg~~~ 598 (710)
. +|.+.|++.||+|.+.+ +++||+|+++++
T Consensus 232 ~-~y~~~G~~~D~~~~~~gi~~~~t~El~~~~ 262 (277)
T smart00631 232 A-IYPASGGSDDWAYGTLGIPFSFTLELRDDG 262 (277)
T ss_pred c-ccCCCCchhhhhhccCCCcEEEEEEecCCC
Confidence 5 58889999999999877 699999999975
No 32
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=1.2e-43 Score=376.63 Aligned_cols=233 Identities=29% Similarity=0.422 Sum_probs=190.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHH
Q psy11074 357 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVF 436 (710)
Q Consensus 357 ~~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~ 436 (710)
+++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+ +.......+||.|+|.|++|||||+|++++++
T Consensus 1 ~~~Y~ty~ei~~~L~~La~~~P~lv~l~~IG~S~EGR~I~~l~Is---~~~~~~~~~Kp~I~i~~giHarEwig~~~~l~ 77 (360)
T cd06905 1 FSRYYRYDELTAALQAWASAYPQLCSLESIGKSYEGRDIWLLTLT---NQATGPDREKPAFWIDANIHATEVTGSAVALY 77 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEec---CCCCCCCCCCcEEEEecCCCCCchHHHHHHHH
Confidence 468999999999999999999999999999999999999999999 33333345799999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhccc-CCCCCCCCCCCCCC-------------------------
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE-GKCDSLDGYVGRKN------------------------- 490 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~-~~~~~~~~~~~R~n------------------------- 490 (710)
++++|+.+|++++++++||++++|+|||++||||++++++ +.++ ||++|..
T Consensus 78 li~~Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~~~~~~r~---wRk~r~~~~~~~~~~g~~~~D~n~D~~~~~mr 154 (360)
T cd06905 78 VIQTLLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQALTHPPYV---RRSSRRPYPYPDRIDGLYPEDIDGDGLILQMR 154 (360)
T ss_pred HHHHHHHhccCCHHHHHHHhcCeEEEEeeeCCChheEEeeccccc---cccCCCCcccccccccccccccCccchhheee
Confidence 9999999999999999999999999999999999999998 7777 6655421
Q ss_pred ----------------------------------------------------CCcccCCCCCCCCCcc-------cCCCC
Q psy11074 491 ----------------------------------------------------AHGVDLNRNFPDQFEY-------EAKKV 511 (710)
Q Consensus 491 ----------------------------------------------------~~GvDlNRnf~~~~~~-------~~~~~ 511 (710)
+.|||||||||+.|.. +..++
T Consensus 155 ~~d~~g~w~~~~~~p~~m~~~~~~~~~g~~y~~~~eg~~~~~dg~~~~~~~~~~GvDlNRNf~~~W~~~~~~~y~G~~p~ 234 (360)
T cd06905 155 VKDPCGAWKVSERDPRIMVRREPDEFGGTYYRLLPEGLIRNYDGYNIKIAPPLEGLDFNRNFPHDWRPEGEQYGAGPFPF 234 (360)
T ss_pred ccccccccccccccchhhccccccccCceeeeecccccccccccccccccccccCCCcccCcCCCCCCCCCcCCCCCCCC
Confidence 1599999999999954 56788
Q ss_pred ChHHHHHHHHHHHhC-CceEEEEecCCcccccccccCCCCC---C---------CCccc--cCCcccccccceE------
Q psy11074 512 YEPETQAIMNFIYSN-PFVLSGNLHGGAVARDYASRNPMMA---P---------GHACG--FDFKDGITNGNYW------ 570 (710)
Q Consensus 512 sepEt~al~~~~~~~-~~~~~~~lH~~~~~~~y~~~~~~~~---~---------~~~~~--~~~~~g~~~~~~~------ 570 (710)
|||||+||++|+.+. ++.+++++|++++.+.|+..+.... . +.... ..|+. .++...
T Consensus 235 SEpEt~av~~~~~~~~~i~~~is~Hsyg~~il~P~g~~~~~~~~~~~~~~~~~la~~~~~~~~y~~--~~~~~~~~~~~~ 312 (360)
T cd06905 235 SEPETRAVVEFWTDHPNINGFISYHTYSGVILRPYSDKPDDQMPVDDLELYKALGEKGEELTGYPT--VSVYHEFRYHPK 312 (360)
T ss_pred ChHHHHHHHHHHhcCCCeEEEEEecCCcCeeeeCCCCCcCcCCChhhHHHHHHHHHHHHHhcCccc--cccccceecCCc
Confidence 999999999999987 5889999999999555544332111 0 00000 11110 111111
Q ss_pred EeecCchhhhccccCCeEEEEEEecCC
Q psy11074 571 YKVTGGMQDFNYVHSNCFEITMELSCC 597 (710)
Q Consensus 571 y~~~G~~~D~~y~~~~~~~~T~Elg~~ 597 (710)
++++|++.||+|...|+++||+||...
T Consensus 313 ~~~~G~~~Dw~y~~~gi~s~t~EL~~~ 339 (360)
T cd06905 313 EVTYGAFDDWAYDHLGIFAFTVELWDL 339 (360)
T ss_pred ccccCChhhhhhhcCCeEEEEEEcCCC
Confidence 278999999999998999999999864
No 33
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=100.00 E-value=5.3e-44 Score=374.88 Aligned_cols=243 Identities=36% Similarity=0.640 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhc
Q psy11074 366 LDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 445 (710)
Q Consensus 366 ~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y 445 (710)
|+++|++|+++||+++++.+||+|.+||+|++++|+ ++.....++||.|+|+|++||+|++|+++++.|+++|+.+|
T Consensus 1 i~~~l~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~---~~~~~~~~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~ 77 (279)
T PF00246_consen 1 INAYLDALAARYPDIVRLESIGKSYEGRPIYALTIG---SNSNGSDPGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGY 77 (279)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEES---SSTTTTSTTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcEEEEEeeECCCCCeEEEEEee---cccccccccccceEEEecccccccCchHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999 44334557899999999999999999999999999999988
Q ss_pred CCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc-------------cCCCCC
Q psy11074 446 GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY-------------EAKKVY 512 (710)
Q Consensus 446 ~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~-------------~~~~~s 512 (710)
+++.++.||++++|+|||++||||+++.+.+++. |+++|.|+.|||||||||..|+. +..++|
T Consensus 78 -~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~---w~~~R~n~~GvDlNRnf~~~w~~~~~~~~~~~~~y~g~~~~s 153 (279)
T PF00246_consen 78 -DDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRG---WRKNRSNANGVDLNRNFPYQWNEEGSSSNPCSETYRGPAPFS 153 (279)
T ss_dssp -TSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TT---CCSTSSBTTS--GGGSSSSSTTSSSSBSSTTSTTB--SSTTT
T ss_pred -cchhhhhhcccceEEEEeeecccceeeeeecccc---cccccccccccccccccCcccccccccCCCCCcccCCCcchh
Confidence 8999999999999999999999999999999999 99999999999999999999943 234679
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCcccccccccCCC-CC--CCCc-----------cc-----cCC-cccccccceEEe
Q psy11074 513 EPETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPM-MA--PGHA-----------CG-----FDF-KDGITNGNYWYK 572 (710)
Q Consensus 513 epEt~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~~-~~--~~~~-----------~~-----~~~-~~g~~~~~~~y~ 572 (710)
||||+||++++++.++++++|+|+++....|+..+.. .. .... +. ..| ..|...+..||.
T Consensus 154 epEt~al~~~~~~~~~~~~id~H~~~~~~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 233 (279)
T PF00246_consen 154 EPETRALRNLIQDWNPDFFIDFHSGGNAILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQNYDSYGITNGDNWYP 233 (279)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEESSSEEEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTTTBSEEEEEHHHHTTT
T ss_pred hhHHHHHHHHHhhcceeEEEeccccccceeeecccccccCCchhhhhhHHHHHHHHHhhhccccccccccCCcccccccc
Confidence 9999999999999999999999999885544433211 10 0000 00 123 445455566899
Q ss_pred ecCchhhhccccCCe-EEEEEEecCCC--CCCchhhHHHHHHhhhh
Q psy11074 573 VTGGMQDFNYVHSNC-FEITMELSCCK--YPKASDLKHYWAANKES 615 (710)
Q Consensus 573 ~~G~~~D~~y~~~~~-~~~T~Elg~~~--~p~~~~l~~~w~~n~~~ 615 (710)
+.|++.||+|...++ ++||+|++|++ +|+.++|..+|+++.++
T Consensus 234 ~~G~~~D~~~~~~g~~~~~t~E~~~~~~f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 234 ASGSSDDYAYYHHGIPFSFTLELGCCGNFYPPASEIEPIWEENWEA 279 (279)
T ss_dssp TSSSHHHHHHHHTTSSEEEEEEESSSSSTSS-GGGHHHHHHHHHH-
T ss_pred cccccceeehhhcCCcEEEEEEeCCCCCccCCHHHHHHHHHHHhhC
Confidence 999999999998898 99999999998 89999999999998753
No 34
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=2.2e-43 Score=362.58 Aligned_cols=226 Identities=23% Similarity=0.250 Sum_probs=188.2
Q ss_pred CCC-HHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 360 YYN-STELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 360 y~t-y~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
||+ ++||.++|++|+++||+ +++..||+|++||+|++++|+ .+.+.. ..||.|++.||+|||||+|++++++|+
T Consensus 2 Yh~~~~ei~~~l~~l~~~~p~-~~~~~ig~S~egr~i~~i~~~---~~~~~~-~~k~~i~i~agiHarE~i~~~~~l~li 76 (272)
T cd06227 2 YHTATDEINEEADALVKNIRL-SRLGELIESVKVRNFSSITLN---PNGDPS-KKKVKALLLFGEHARELISPETGLHLL 76 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCC-cEEeeeeeccCCceeeEEEec---CCCCCC-CCCCEEEEECCccCCchhhHHHHHHHH
Confidence 899 99999999999999999 889999999999999999999 322211 369999999999999999999999999
Q ss_pred HHHHHhcCC----CHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc--------
Q psy11074 439 QYLVLKDGK----DDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY-------- 506 (710)
Q Consensus 439 ~~l~~~y~~----~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~-------- 506 (710)
++|+.+|.. ++.+++||++++|+|||++||||+++++.+++. +|.|++|||||||||+.|+.
T Consensus 77 ~~L~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~------wR~N~~GVDLNRNf~~~w~~~~~~~~~~ 150 (272)
T cd06227 77 SNLCGELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYC------LRENENGVDLNRNYGADWGFKEDDYEDE 150 (272)
T ss_pred HHHHHhcccccchhHHHHHHHhcCcEEEEeccCCchheeEeccCcc------cccCCccccccccCCcccccCCCCcccc
Confidence 999998854 378999999999999999999999998888776 46677899999999999975
Q ss_pred ---cCCCCChHHHHHHHHHHHhCCceEEEEecCCcccccc--cccCCCC--------CCCC----ccccCCcccccccce
Q psy11074 507 ---EAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAVARDY--ASRNPMM--------APGH----ACGFDFKDGITNGNY 569 (710)
Q Consensus 507 ---~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~~y--~~~~~~~--------~~~~----~~~~~~~~g~~~~~~ 569 (710)
+..++|||||+||++|+.+++|++++|+|++++...| +...... ..+. .....|..|......
T Consensus 151 ~y~G~~~~sEpEt~av~~~~~~~~~~~~i~~Hs~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~~ 230 (272)
T cd06227 151 EYSGPAPFSEPETRVLRDLLTSFSPDVFLSVHSGTLALFTPYAYKKEQPEPNLAEDMRILLLISNKHCPRCQVGSAGKLV 230 (272)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCeEEEEeccCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCceecCccce
Confidence 2357899999999999999999999999999884433 3222111 0000 112567777665555
Q ss_pred EEeecCchhhhccccCCe-EEEEEEecC
Q psy11074 570 WYKVTGGMQDFNYVHSNC-FEITMELSC 596 (710)
Q Consensus 570 ~y~~~G~~~D~~y~~~~~-~~~T~Elg~ 596 (710)
.|+++|++.||+|...++ ++||+||+.
T Consensus 231 ~Y~a~G~s~Dway~~~gip~s~t~EL~~ 258 (272)
T cd06227 231 GYLAHGTSMDYMYDVLKVPYSFTFEIYG 258 (272)
T ss_pred eecCCCCHHHHHhhcCCCcEEEEEEccC
Confidence 699999999999987675 799999984
No 35
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=2.1e-40 Score=345.43 Aligned_cols=217 Identities=19% Similarity=0.274 Sum_probs=176.2
Q ss_pred cccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcC------------CCHHHHH
Q psy11074 386 IGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDG------------KDDRITQ 453 (710)
Q Consensus 386 iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~------------~~~~~~~ 453 (710)
-++|+|||+|++++|+ .+. ...||.|+|+|++|||||++++++++|+++||..|. .++++++
T Consensus 6 ~~~S~EgR~I~~l~I~---~~~---~~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~ 79 (332)
T cd06228 6 PHKTYEGRTPHGAKIG---AGT---LTSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKA 79 (332)
T ss_pred CCCCCCCCeeEEEEEe---CCC---CCCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHH
Confidence 4799999999999999 332 146999999999999999999999999999999874 4789999
Q ss_pred HhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCC--------CCCcccCCCCCCCCCcc-------------------
Q psy11074 454 LLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRK--------NAHGVDLNRNFPDQFEY------------------- 506 (710)
Q Consensus 454 ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~--------n~~GvDlNRnf~~~~~~------------------- 506 (710)
||+ ++|+|||++|||||+++++.+++ |||+|. +|.||||||||++.|+.
T Consensus 80 lL~-~~i~IvP~vNPDGy~~s~~~~r~---WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcs 155 (332)
T cd06228 80 ILD-AGIVVFPLVNPDGRAHDQTANSC---WRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPAS 155 (332)
T ss_pred HHh-CeEEEEEeecCcchhheeccchh---hhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCc
Confidence 999 99999999999999999999999 999886 68999999999999961
Q ss_pred ----cCCCCChHHHHHHHHHHHhCC-ceEEEEecCCcccccccccCCCCC-------------CCC--------------
Q psy11074 507 ----EAKKVYEPETQAIMNFIYSNP-FVLSGNLHGGAVARDYASRNPMMA-------------PGH-------------- 554 (710)
Q Consensus 507 ----~~~~~sepEt~al~~~~~~~~-~~~~~~lH~~~~~~~y~~~~~~~~-------------~~~-------------- 554 (710)
++.++|||||+||++++.+.+ +.+++++|++++...|+..+.... .+.
T Consensus 156 e~Y~G~~pfSEPET~av~~~~~~~~~~~~yls~HSygq~il~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T cd06228 156 ETFHGTAAFSEPETRNVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPDTRYGEY 235 (332)
T ss_pred cccCCCCCCccHHHHHHHHHHhccCCeEEEEEeccCCceEEecccCCccccccccccccccccccccccccccccccccc
Confidence 235689999999999999986 999999999998554443332100 000
Q ss_pred --c------------c--------ccCCcccccccceEEeecCchhhhcccc-------CCeEEEEEEecC-------CC
Q psy11074 555 --A------------C--------GFDFKDGITNGNYWYKVTGGMQDFNYVH-------SNCFEITMELSC-------CK 598 (710)
Q Consensus 555 --~------------~--------~~~~~~g~~~~~~~y~~~G~~~D~~y~~-------~~~~~~T~Elg~-------~~ 598 (710)
+ . ...|..|.. ..+|+++|++.||+|.. ...++||+||+. ++
T Consensus 236 ~~~~~~~~l~~~a~~~~~ai~~~~g~~Y~~g~~--~~lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~~~~~~~gF 313 (332)
T cd06228 236 IDSDDWDAAVNLAARMGLAMAAARGRIYTVSQS--VGLYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGETNSEAECPF 313 (332)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCCceeCCc--ccccCCCCChhhhhhhccccccccCceEEEEEEeCCCCCCCCcCC
Confidence 0 0 034556543 35899999999999975 467999999985 46
Q ss_pred CCCchhhHHHHHHhhh
Q psy11074 599 YPKASDLKHYWAANKE 614 (710)
Q Consensus 599 ~p~~~~l~~~w~~n~~ 614 (710)
+|+.++|...-++...
T Consensus 314 ~~p~~~i~~~~~E~~~ 329 (332)
T cd06228 314 YPTYSEYNQIIKEVAA 329 (332)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6888888876655443
No 36
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=100.00 E-value=2.6e-40 Score=340.16 Aligned_cols=214 Identities=24% Similarity=0.316 Sum_probs=171.0
Q ss_pred ccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCC-----CHHHHHHhhcccEEEE
Q psy11074 389 SVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGK-----DDRITQLLNSTDIYIV 463 (710)
Q Consensus 389 S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~-----~~~~~~ll~~~~i~iv 463 (710)
|++||+|++++|+ + ++|.|+|+|++|||||+|++++++++++||.+|.. +..+++||++++|+||
T Consensus 1 S~eGR~I~~~~ig---~-------~~~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~iv 70 (255)
T cd06229 1 SVLGRDIYEVKLG---N-------GPKTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFV 70 (255)
T ss_pred CCCCceeeEEEEc---C-------CCceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEE
Confidence 7899999999999 2 34899999999999999999999999999998854 4568999999999999
Q ss_pred EeeCcccchhcccCCCCCC-------CCCCC-------CCCCCcccCCCCCCCCCcc--------------cCCCCChHH
Q psy11074 464 PSINPDGFAAAKEGKCDSL-------DGYVG-------RKNAHGVDLNRNFPDQFEY--------------EAKKVYEPE 515 (710)
Q Consensus 464 P~~NPDG~~~~~~~~~~~~-------~~~~~-------R~n~~GvDlNRnf~~~~~~--------------~~~~~sepE 515 (710)
|++||||+++++.+.+... .|+++ |.||.|||||||||+.|+. ++.++||||
T Consensus 71 P~~NPDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpE 150 (255)
T cd06229 71 PMVNPDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPE 150 (255)
T ss_pred eCccCCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchh
Confidence 9999999999887642210 13333 6789999999999999964 235689999
Q ss_pred HHHHHHHHHhCCceEEEEecCCcccccccccCCCCCCCCccc------cCCcccccccceEEeecCchhhhccccCCeEE
Q psy11074 516 TQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAPGHACG------FDFKDGITNGNYWYKVTGGMQDFNYVHSNCFE 589 (710)
Q Consensus 516 t~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~~~~~~~~~~------~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~ 589 (710)
|+||++|+.+++|.+++++|+++....|.............. ..|..+...+ |++.|++.||+|...++++
T Consensus 151 tral~~~~~~~~~~~~i~~Hs~g~~i~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~---~~~~G~~~Dw~~~~~gi~s 227 (255)
T cd06229 151 TIALAELTRENRFRAVLAYHSQGEEIYWGYGGLEPPESQKMAELLAEVSGYELVDSES---KRSYGGYKDWFIQKFRRPG 227 (255)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCeEEecCCCCCchHHHHHHHHHhhccCCccccccc---cCCCCCHHHHHHhhcCCeE
Confidence 999999999999999999999987444443221111111111 3355444322 8899999999999999999
Q ss_pred EEEEecCCCCC-CchhhHHHHHHhhhh
Q psy11074 590 ITMELSCCKYP-KASDLKHYWAANKES 615 (710)
Q Consensus 590 ~T~Elg~~~~p-~~~~l~~~w~~n~~~ 615 (710)
||+||+...-| +.++++.+|++|+..
T Consensus 228 ~t~El~~~~~~~~~~~~~~~~~~~~~~ 254 (255)
T cd06229 228 FTIEIGRGTNPLPLSQFKTIYKENKGI 254 (255)
T ss_pred EEEEeCCCCCCCChHHhHHHHHhhcCC
Confidence 99999987665 479999999999853
No 37
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=2.8e-36 Score=305.62 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
-.+++|+.++|++|++. +++++.+||+|++||+|++++|+ +. ++||.|++.|++||+|++|+++++.|++
T Consensus 7 ~~~~~~i~~~l~~L~~~--~~v~~~~iG~S~eGR~i~~l~ig---~~-----~~k~~v~i~~~iH~~E~~g~~~~~~~~~ 76 (244)
T cd06237 7 LIDNQDVKDWVDSLIKQ--PFVELELLGLSTQGRPLKALERG---NP-----DSKEWIVVISRQHPPEVTGALAMKAFIE 76 (244)
T ss_pred eCCHHHHHHHHHHHhcC--CCeEEEEeeEcCCCCEEEEEEec---CC-----CCCceEEEEcCcCCCcHHHHHHHHHHHH
Confidence 35789999999999766 67999999999999999999998 22 3589999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHH
Q psy11074 440 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAI 519 (710)
Q Consensus 440 ~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al 519 (710)
+|+. +++.++.+|++++|+|||++||||+++. .+|.|++||||||||+. ++||||+|+
T Consensus 77 ~l~~---~~~~~~~ll~~~~i~ivP~~NPDG~~~~-----------~wR~N~~GvDLNRnw~~--------~sepEt~a~ 134 (244)
T cd06237 77 TLLS---DSELAKKFRAKYNVLLVPNMNPDGVDLG-----------HWRHNANGIDLNRDWSN--------FNQPETRAI 134 (244)
T ss_pred HHHh---CCHHHHHHHHhCEEEEEEeeCcchhhcC-----------CccCCCCCcCCCCCCCC--------CCCHHHHHH
Confidence 9997 4566799999999999999999999863 35888899999999965 799999999
Q ss_pred HHHHHhC-----CceEEEEecCCccccccccc--CCCCCCC--C----ccc---cCCcccccccceEEeecCchhhhccc
Q psy11074 520 MNFIYSN-----PFVLSGNLHGGAVARDYASR--NPMMAPG--H----ACG---FDFKDGITNGNYWYKVTGGMQDFNYV 583 (710)
Q Consensus 520 ~~~~~~~-----~~~~~~~lH~~~~~~~y~~~--~~~~~~~--~----~~~---~~~~~g~~~~~~~y~~~G~~~D~~y~ 583 (710)
++++.+. ++++++|+|+++...-|+.. ....... . ... ..|..+ +....|+++|++.||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~id~Hs~~~~i~~~~~~~~~~~~p~~~~~~~~~l~~~~~~Y~~~--~~~~~~~~~g~~~Dw~~~ 212 (244)
T cd06237 135 RDYLVRLVKEGGKIVFALDFHSTWHDVFYTMPEDYKLQFPGFVADWLKELDKRILDYKVN--NRSGSSPDRGVSKQYFAD 212 (244)
T ss_pred HHHHHHHhccCCCEEEEEEeccCCcceEecCCCCCCcccchHHHHHHHHhcCcCCCceec--cccCcccCCCcHHHHHHH
Confidence 9999864 89999999999885444421 1110000 0 000 233333 233446789999999999
Q ss_pred cCCeEEEEEEecCC
Q psy11074 584 HSNCFEITMELSCC 597 (710)
Q Consensus 584 ~~~~~~~T~Elg~~ 597 (710)
..++++||+|+|..
T Consensus 213 ~~~~~~~T~E~g~~ 226 (244)
T cd06237 213 EHGAHAITYEVGDN 226 (244)
T ss_pred hCCCcEEEEecCCC
Confidence 99999999999853
No 38
>KOG2650|consensus
Probab=100.00 E-value=1.2e-35 Score=316.75 Aligned_cols=216 Identities=23% Similarity=0.399 Sum_probs=188.2
Q ss_pred eEEeccchHHHHHHhhc-CCceeEEecCCccccccccCC----------CCCCCccCCHHHHHHHHHHHHHHCCCcEEEE
Q psy11074 2 TLIVPSLSLLLCHVTLS-TAADYYFDFDDLTGLEDADSA----------GIDLQRYYNSTELDAFILKTVKSYPHLVRAE 70 (710)
Q Consensus 2 ~~~v~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~y~~~~ei~~~l~~l~~~~p~~~~~~ 70 (710)
+|+|++..+..+..+|+ .+++|.++|.|+|+.++++.. .++|.+||+++||++||++|+.+||+++++.
T Consensus 66 di~V~~~~~~~~~~~L~~~~i~~~v~i~d~q~~i~~~~~~~~~~~~~~~~~~~~~Y~~le~I~~~l~~l~~~~P~~v~~~ 145 (418)
T KOG2650|consen 66 DILVPPEDLAAFKAFLKSANISYEVLIEDLQKLIDEERVEVRLRNRRSNDFNWERYHSLEEIYEWLDNLAERYPDLVSLI 145 (418)
T ss_pred eEEECHHHHHHHHHHHHhcCCceEEEhhhHHHHHHHHhhhccccccccccccHHHhcCHHHHHHHHHHHHHhCCCceEEE
Confidence 79999999999999998 999999999999999997533 3789999999999999999999999999999
Q ss_pred eeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEe
Q psy11074 71 TIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVP 150 (710)
Q Consensus 71 ~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP 150 (710)
.||+|+|||+|.+++|+.+ ...+||+||+.||+||||||++.++++++++|+..|+.|+.++++|++.+|+|+|
T Consensus 146 ~IG~s~EgR~i~~lkIs~~------~~~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~dwyI~P 219 (418)
T KOG2650|consen 146 HIGRSYEGRPLKVLKISGG------DNRNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLDWYILP 219 (418)
T ss_pred EcccccCCceEEEEEecCC------CCCCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCcEEEEe
Confidence 9999999999999999986 1467999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhhcCCC----CCcCC-------c---cccccccccceeEEEEeeccC-CCCCCcchHHHHHHhhHHHHHHH
Q psy11074 151 SINPDGFAAAKEGNL----NTKQK-------R---MQDFNYVHSNCFEITMELSCC-KYPKASDLKHYWAANKESLIKLI 215 (710)
Q Consensus 151 ~~NPDG~~~~~~~~~----NR~~p-------g---~~d~~y~~~~~~~~t~e~~~~-~~p~~~~l~~~w~~n~~al~~~~ 215 (710)
++|||||+|+++.+| ||+.- | +|||+|.|....+-.- -.|. .|-+++..+ |++.+++..|+
T Consensus 220 v~NPDGYeYS~t~~R~WRKnRs~~~~~~~C~GvDlNRNfd~~W~~~~Gas~-~PCse~Y~G~~pfS---EpEt~av~~fi 295 (418)
T KOG2650|consen 220 VVNPDGYEYSRTTDRLWRKNRSPNGCASRCIGVDLNRNFDFHWGGGKGASS-DPCSETYAGPSPFS---EPETRAVRDFI 295 (418)
T ss_pred eecCCcceeeecccccccccCCCCCCCCeeeCCCCCCCccCcCCCCCCCCC-CCCccccCCCCCCC---cHHHHHHHHHH
Confidence 999999999999998 76221 2 5999999985322211 2243 577888888 89999999998
Q ss_pred HHHhcceeEEEE
Q psy11074 216 ENVHRGVYGIVT 227 (710)
Q Consensus 216 ~~~~~gi~G~V~ 227 (710)
......++++|.
T Consensus 296 ~~~~~~i~~yis 307 (418)
T KOG2650|consen 296 TSFENNIKAYIS 307 (418)
T ss_pred HhcCcceEEEEE
Confidence 754444666654
No 39
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=6.1e-34 Score=290.22 Aligned_cols=215 Identities=23% Similarity=0.279 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHH
Q psy11074 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFL 437 (710)
Q Consensus 358 ~~y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l 437 (710)
..-|+|+++.++|+.+++. ..+++.++|+|++||+|++++|+ + ++ .+||.|+|.|++||+|++|..+++.|
T Consensus 8 ~~Pys~~~~~~~l~~~~~~--~~v~~~~iG~S~eGR~i~~l~I~---~-~~---~~k~~V~i~a~iH~~E~~g~~~~~~l 78 (263)
T cd06234 8 FAPYSYERHLALIARAQGA--PDVRLEVLGQTVQGRDIDLLTFG---E-PG---PGKKKLWIIARQHPGETMAEWFMEGL 78 (263)
T ss_pred eCCCCHHHHHHHHHHHhcC--CCeEEEEEEEcCCCCeEEEEEEc---c-CC---CCCCEEEEECCCCCCcHHHHHHHHHH
Confidence 3458999999999999873 47999999999999999999999 2 22 46899999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHH
Q psy11074 438 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQ 517 (710)
Q Consensus 438 ~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~ 517 (710)
++.|+.. .++.+++||++++|+|||++||||+++. ..|.||.|+||||||+. ..++++|||+
T Consensus 79 l~~L~~~--~d~~~~~ll~~~~~~IvP~~NPDG~~~g-----------~~R~n~~GvDLNRnw~~-----p~~~s~PEt~ 140 (263)
T cd06234 79 LERLLDP--DDAVARALLEKAVFYVVPNMNPDGSARG-----------HLRTNAAGANLNREWAE-----PSAERSPEVF 140 (263)
T ss_pred HHHHhhc--CCHHHHHHHhcCEEEEEeeecchhhhhc-----------CCccCCCCCCCCCCCCC-----CCCCCCHHHH
Confidence 9999984 5889999999999999999999999863 35899999999999986 6678999999
Q ss_pred HHHHHHHhCCceEEEEecCCccc-ccccccCCCCCCCC-c---cc-----------cCCcc--cccccceEEeecCchhh
Q psy11074 518 AIMNFIYSNPFVLSGNLHGGAVA-RDYASRNPMMAPGH-A---CG-----------FDFKD--GITNGNYWYKVTGGMQD 579 (710)
Q Consensus 518 al~~~~~~~~~~~~~~lH~~~~~-~~y~~~~~~~~~~~-~---~~-----------~~~~~--g~~~~~~~y~~~G~~~D 579 (710)
+|++++++.++++++|+|+.+.. ..|.......+... . .. ..|.. |.......+...|...+
T Consensus 141 av~~~~~~~~~~~~ld~Hs~~~~py~f~~g~~~~p~~~~~l~~l~~~~~~al~~~~~~f~~~~~y~~~~~g~~~~~~a~~ 220 (263)
T cd06234 141 AVRQRMEETGVDFFLDVHGDEALPYNFIAGSEGVPGWTPRLAALEARFKAALLRASPDFQTEHGYPKDAPGQANLTIATN 220 (263)
T ss_pred HHHHHHHhcCCeEEEEeCCCCCCCccEeccCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccCCCCCCchhHHHHHH
Confidence 99999999999999999998763 22221111111000 0 00 11211 11112222334567799
Q ss_pred hccccCCeEEEEEEecCCCC
Q psy11074 580 FNYVHSNCFEITMELSCCKY 599 (710)
Q Consensus 580 ~~y~~~~~~~~T~Elg~~~~ 599 (710)
|.+.+.+|+++|+||+....
T Consensus 221 ~~~~~~~~~s~TlEmpf~~~ 240 (263)
T cd06234 221 WVAHRFDCLSMTLEMPFKDN 240 (263)
T ss_pred HHHhhcCceEEEEEeecCCc
Confidence 99999999999999986654
No 40
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=100.00 E-value=2.3e-33 Score=288.65 Aligned_cols=208 Identities=19% Similarity=0.147 Sum_probs=170.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 439 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~ 439 (710)
-.+|.++..+++.++ |..+++.+||+|.+||+|++++++ . ..+||.|+|.|++||+||+|+++++.+++
T Consensus 10 ~~~y~~~~~l~~sl~---~~~v~l~~IG~s~egr~i~~~~~~---~-----~~~k~~i~i~a~iH~~E~~~~~~~~~li~ 78 (269)
T cd03856 10 NQIYDRRLALCESLQ---GNSCDLLTITSPPEGNDIKYEHLC---S-----FANKKYIFLIARVHPGETNASWVMKGFLE 78 (269)
T ss_pred CcCHHHHHHHHHHhc---CCceeEEEeccCCCCccccceecc---C-----CCCCcEEEEEcCcCCCchHHHHHHHHHHH
Confidence 357888999998886 778999999999999999999987 2 24799999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHH
Q psy11074 440 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAI 519 (710)
Q Consensus 440 ~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al 519 (710)
+|+. .++.++.||++++|+|||++||||+++. .+|.|+.|+||||||+. +.++++||++++
T Consensus 79 ~Ll~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----------~~R~n~~G~DLNR~~~~-----p~~~~~pE~~~~ 139 (269)
T cd03856 79 FLLS---DNPTAQSLRESFVFKIVPMLNPDGVIRG-----------NYRCSLSGVDLNRQWQN-----PSPDLHPEIYLV 139 (269)
T ss_pred HHHh---CCHHHHHHHhcCeEEEEeeeCCcccccc-----------CCcCCCCCCCcCCCCCC-----CCCCCCCCHHHH
Confidence 9997 4567999999999999999999999852 36889999999999986 677899999999
Q ss_pred HHHHHhC-----CceEEEEecCCc---ccccccccCCCCC-------CC----Ccc------ccCCcccccccceEEeec
Q psy11074 520 MNFIYSN-----PFVLSGNLHGGA---VARDYASRNPMMA-------PG----HAC------GFDFKDGITNGNYWYKVT 574 (710)
Q Consensus 520 ~~~~~~~-----~~~~~~~lH~~~---~~~~y~~~~~~~~-------~~----~~~------~~~~~~g~~~~~~~y~~~ 574 (710)
++++.++ ++++++|+|+++ ..+.|+....... .+ ..+ ...|..+. ....|+++
T Consensus 140 ~~~~~~~~~~~~~~~~~idlH~~~~~~~~f~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~ 217 (269)
T cd03856 140 KGLMLYLAAGKRGVLFYCDFHGHSRKKNVFMYGCSFKDEVWDQGYRIIPKMLSQNAPLFCMFGCSFKVEK--SKASDPDR 217 (269)
T ss_pred HHHHHHHHhccCCceEEEEecCCCccCceEeecCCCchhhhhhHHHHHHHHHHhhChhhhhcCCCcCCCc--CCcccCCC
Confidence 9999988 899999999998 4455654432100 00 000 12344433 23367889
Q ss_pred CchhhhccccCCe-EEEEEEecCCCC
Q psy11074 575 GGMQDFNYVHSNC-FEITMELSCCKY 599 (710)
Q Consensus 575 G~~~D~~y~~~~~-~~~T~Elg~~~~ 599 (710)
|++.||+|...++ ++||+|++.+..
T Consensus 218 gtsr~~~~~~~~i~~syTlE~~~~g~ 243 (269)
T cd03856 218 GTGRVVVAKQIKVQHSYTMEVTFNGN 243 (269)
T ss_pred ChHHHHHHHhcCCcEEEEEecCCCCc
Confidence 9999999987776 999999997655
No 41
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=4.7e-33 Score=283.01 Aligned_cols=209 Identities=23% Similarity=0.156 Sum_probs=161.6
Q ss_pred HHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCC-CCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCC
Q psy11074 370 ILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPD-GRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKD 448 (710)
Q Consensus 370 l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~-~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~ 448 (710)
|++|+++||+++++..||+|++||+|++++|+ ++++ ....+||.|+|.|++|++||+|+.+++++++.|+. ++
T Consensus 1 l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~It---~~~~~~~~~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~---~~ 74 (261)
T cd06908 1 LDALEKRSLDYFRREQLGQSVQKRRLDLLTID---SPDNLREDSEKKVIFITARVHPGESPSSYVCQGLIDFLVS---NH 74 (261)
T ss_pred ChHHHhhCCCcEEEEEeEEcCCCCeeEEEEEc---CCCccccCCCCcEEEEECCcCCCChHHHHHHHHHHHHHhh---CC
Confidence 56889999999999999999999999999999 3322 12347999999999999999999999999999998 48
Q ss_pred HHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC--
Q psy11074 449 DRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN-- 526 (710)
Q Consensus 449 ~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~-- 526 (710)
+.++.|+++++|+||||+||||+++. ..|+||.|+||||||+. +.++++||+++++++++++
T Consensus 75 ~~~~~L~~~~~~~IvP~~NPDGv~~g-----------n~R~~~~G~DLNR~w~~-----p~~~~~PEv~av~~~i~~~~~ 138 (261)
T cd06908 75 PIAKVLREHLVFKIVPMLNPDGVFLG-----------NYRCSLMGHDLNRHWHD-----PSPWAHPTLHAVKNLLKELDN 138 (261)
T ss_pred HHHHHHHHhCcEEEEeeecCcceeec-----------CCcCcCcCcCCCCCCCC-----CCcccChHHHHHHHHHHHhhh
Confidence 99999999999999999999999863 46999999999999987 6778999999999999885
Q ss_pred ----CceEEEEecCCccc---ccccccCCCCCCCCccc----------cCCcccccccceEEeecCchhhhccccCCe--
Q psy11074 527 ----PFVLSGNLHGGAVA---RDYASRNPMMAPGHACG----------FDFKDGITNGNYWYKVTGGMQDFNYVHSNC-- 587 (710)
Q Consensus 527 ----~~~~~~~lH~~~~~---~~y~~~~~~~~~~~~~~----------~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~-- 587 (710)
++++++|+|+++.. .+|+........-..+. ..|......-..--.-.|+..-|.+...++
T Consensus 139 ~~~~~i~~~lD~H~hs~~~~~F~yG~~~~~~~~~~~~~~fp~~l~~~~~~F~~~~~~f~~~~~k~gtar~~~~~~~~~~~ 218 (261)
T cd06908 139 DSTTQLDFYIDLHAHSSLMNCFIYGNTYDDVYRYERQLVFPKLLAQNAEDFSMEHTMFNRDAVKAGTGRRFLGSLLSDNV 218 (261)
T ss_pred ccccCeeEEEEeeccccccceeeccccCCccccHHHHHHHHHHHHHhCHHhcccCCcccCCCCCCChHHHHHHHHhCCCc
Confidence 79999999999873 35554432221111000 112211000000011236666688877776
Q ss_pred EEEEEEecCCCCC
Q psy11074 588 FEITMELSCCKYP 600 (710)
Q Consensus 588 ~~~T~Elg~~~~p 600 (710)
.+||+|++-+++.
T Consensus 219 ~s~TlE~sf~g~~ 231 (261)
T cd06908 219 NCYTLEVSFYGYN 231 (261)
T ss_pred eEEEEeecCCccc
Confidence 9999999876654
No 42
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=2.6e-32 Score=280.19 Aligned_cols=187 Identities=23% Similarity=0.336 Sum_probs=147.7
Q ss_pred CCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCccc
Q psy11074 391 QGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDG 470 (710)
Q Consensus 391 eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG 470 (710)
...+|++++|+ +. .+.||.|+++||+||+||+|++++++++++|+..|..|+.++++|++.+|+|||++||||
T Consensus 8 ~~~pi~~v~ig---~~----~~~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG 80 (273)
T cd03862 8 LRFPIYALELG---SP----DPKAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVG 80 (273)
T ss_pred CcceeEEEEec---CC----CCCCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCH
Confidence 35789999998 21 146899999999999999999999999999999998999999999999999999999999
Q ss_pred chhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc-------------------cCC-CCChHHHHHHHHHHHhC----
Q psy11074 471 FAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY-------------------EAK-KVYEPETQAIMNFIYSN---- 526 (710)
Q Consensus 471 ~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~-------------------~~~-~~sepEt~al~~~~~~~---- 526 (710)
+ |+++|.|++|||||||||..|.. +.. ++|||||+||+++++++
T Consensus 81 ~------------~~~~R~n~~GVDLNRNfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~~~~~ 148 (273)
T cd03862 81 M------------ALKTRSNGNGVDLMRNAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVRELLFES 148 (273)
T ss_pred H------------HhcccCCCCCcccCCCCCCCccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccC
Confidence 7 77899999999999999998751 111 58999999999999986
Q ss_pred CceEEEEecCCc---c--cccccccCCCCCCCCc------------cccCCcccccccceEEeecCchhhhccccCC---
Q psy11074 527 PFVLSGNLHGGA---V--ARDYASRNPMMAPGHA------------CGFDFKDGITNGNYWYKVTGGMQDFNYVHSN--- 586 (710)
Q Consensus 527 ~~~~~~~lH~~~---~--~~~y~~~~~~~~~~~~------------~~~~~~~g~~~~~~~y~~~G~~~D~~y~~~~--- 586 (710)
++++++|+|||. . ..+|+........... +...|..|. ....|.+.|++.||+|...+
T Consensus 149 ~~~~~ld~HSg~G~~~~i~~Pyg~~~~~~~~~~~~~~l~~~~~~~~~~~~Y~~g~--~s~~Y~a~G~~~D~~y~~~~~~~ 226 (273)
T cd03862 149 PFSIALDCHSGFGLVDRIWFPYAYTKEPIPHLAEIYALKELLERTYPNHVYRFEP--QSRHYLTHGDLWDYLYDQHQKQQ 226 (273)
T ss_pred CeEEEEEECCCCCccCEEEcCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEECC--cceeEECCCCHHHHHHhhcCccc
Confidence 789999999963 3 3344433211111000 112344333 33479999999999997544
Q ss_pred ----eEEEEEEecCCC
Q psy11074 587 ----CFEITMELSCCK 598 (710)
Q Consensus 587 ----~~~~T~Elg~~~ 598 (710)
.++||+|+|...
T Consensus 227 ~~~~~l~~TlE~Gt~~ 242 (273)
T cd03862 227 PNGRFLPLTLEMGSWL 242 (273)
T ss_pred ccccceeEEEEeecch
Confidence 369999999863
No 43
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.97 E-value=1.1e-30 Score=268.74 Aligned_cols=154 Identities=22% Similarity=0.257 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCC-CCCCCcceEEEeeccccCccchHHHHHHHH
Q psy11074 360 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPD-GRTLMKPMFKYVANMHGDETVGYALMVFLI 438 (710)
Q Consensus 360 y~ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~-~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~ 438 (710)
+.+|+||.++|++|++++|.+.++.++|+|.|||+|++++|++ ... ....+||.|+++||+||+||+|+++++.++
T Consensus 2 ~t~y~e~~~~l~~La~~~~~i~~~~~iG~S~eGR~i~~l~is~---~~~~~~~~~kp~V~i~~giHg~E~~g~~a~l~ll 78 (268)
T cd06242 2 PTSHEEMESFMKSLASKNDWMSYHSDIGKSEEGRSIPYVYLST---SKSSSSSSKKLRVWLQGGVHGNEPAGDEAALALL 78 (268)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEECccccCCceeEEEEEec---CCccccCCCCCEEEEECCcCCCCHHHHHHHHHHH
Confidence 5689999999999999999988899999999999999999993 211 123579999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHH
Q psy11074 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQA 518 (710)
Q Consensus 439 ~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~a 518 (710)
++|+.+ +...++|+++.|+|||++||||+++. .|.||.|+||||||.. .++|||++
T Consensus 79 ~~L~~~----~~~~~lL~~~~i~ivP~~NPDG~~~~------------~R~na~g~DlNRD~~~--------~~~pEtra 134 (268)
T cd06242 79 GKLDNN----PKWASVLEKIDIIVLPRYNPDGSAYF------------QRTLATGYDPNRDHTK--------LARQQTRD 134 (268)
T ss_pred HHHHhC----chHHHHHhcCeEEEEeccCcchhhhc------------cccCCcCcccCCCCCc--------ccCHHHHH
Confidence 999973 34458999999999999999999853 5899999999999966 68999999
Q ss_pred HHHHHHhCCceEEEEecCCccc
Q psy11074 519 IMNFIYSNPFVLSGNLHGGAVA 540 (710)
Q Consensus 519 l~~~~~~~~~~~~~~lH~~~~~ 540 (710)
+++++.++++++++|+|..+..
T Consensus 135 ~~~~~~~~~P~v~iD~He~~~~ 156 (268)
T cd06242 135 IKEAFSKFNPHIAIDAHEYGAF 156 (268)
T ss_pred HHHHHHHhCCcEEEEeccCCcc
Confidence 9999999999999999997663
No 44
>PRK10602 murein peptide amidase A; Provisional
Probab=99.97 E-value=5.1e-31 Score=264.02 Aligned_cols=196 Identities=26% Similarity=0.280 Sum_probs=152.4
Q ss_pred EEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccE
Q psy11074 381 VRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDI 460 (710)
Q Consensus 381 ~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i 460 (710)
+...++|+|++||+|++++++ . .+|+.++++||+||+||+|.++++++++.|+.+ ...+
T Consensus 15 ~~~~~iG~S~egrpi~~l~~~---~------~~~~~vli~agiHG~E~~g~~~~~~l~~~l~~~------------~~~~ 73 (237)
T PRK10602 15 PGTEHYGRSLLGAPLLWFPAP---A------ASRESGLILAGTHGDETASVVTLSCALRTLTPS------------LRRH 73 (237)
T ss_pred ccccccccccCCCceEEEEcC---C------CCCceEEEEecCCCCcHHHHHHHHHHHHhhhhh------------ccce
Confidence 467799999999999999998 2 247899999999999999999999999998752 2357
Q ss_pred EEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCC-CCcc--------------------cCCCCChHHHHHH
Q psy11074 461 YIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD-QFEY--------------------EAKKVYEPETQAI 519 (710)
Q Consensus 461 ~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~-~~~~--------------------~~~~~sepEt~al 519 (710)
+|||++||||+++. .|.||+|+|||||||. .|.. +..++|||||+|+
T Consensus 74 ~iipvvNPDG~~~~------------~R~n~~GvDLNRnFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al 141 (237)
T PRK10602 74 HVVLAVNPDGCQLG------------LRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQAL 141 (237)
T ss_pred EEEEEECccccccc------------cccCCCCCchhhcCCCcccccccccccccCCCCccchhhccCCCCCCCHHHHHH
Confidence 99999999999864 5789999999999997 5632 2456799999999
Q ss_pred HHHHHhCCceEEEEecCCcccccccccCCCC-CCCCccccCCcccccccceEEeecCchhhhccccCCeEEEEEEecCCC
Q psy11074 520 MNFIYSNPFVLSGNLHGGAVARDYASRNPMM-APGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCK 598 (710)
Q Consensus 520 ~~~~~~~~~~~~~~lH~~~~~~~y~~~~~~~-~~~~~~~~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~ 598 (710)
++|+.++++.+++++|+.. .+.. ++.. ..+....+.|..+.. ....|+++|++.||++ ..+++.+|+|+++
T Consensus 142 ~~~i~~~~~~~~~s~HsP~---~~~~-~~~~~~~~~~la~af~~~~~-~~~~y~~~Gs~~~~a~-~~giP~it~El~~-- 213 (237)
T PRK10602 142 CQLIHRLQPAWVVSFHDPL---ACIE-DPRHSELGEWLAQAFELPLV-TSVGYETPGSFGSWCA-DLNLHCITAELPP-- 213 (237)
T ss_pred HHHHHHcCCCEEEEeeccc---cccC-CccchHHHHHHHHHhCCCeE-eecCCCCCCcHHHHHH-HcCCcEEEEecCC--
Confidence 9999999999999999942 1211 1111 111111233443332 2355888999999998 5788889999997
Q ss_pred CCCchhhHHHHHHhhhhhh
Q psy11074 599 YPKASDLKHYWAANKESLI 617 (710)
Q Consensus 599 ~p~~~~l~~~w~~n~~~ll 617 (710)
.+..+++..+|..-++.|-
T Consensus 214 ~~~~~~v~~~~~~~~~~l~ 232 (237)
T PRK10602 214 ISADEASEKYLFAMANLLR 232 (237)
T ss_pred cCcHHHHHHHHHHHHHHHh
Confidence 8888999999887766554
No 45
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.97 E-value=1.5e-30 Score=271.37 Aligned_cols=174 Identities=20% Similarity=0.347 Sum_probs=150.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHH
Q psy11074 41 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALM 120 (710)
Q Consensus 41 ~~~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~ 120 (710)
++|++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+++ ...||+|+++|++|||||+|++++
T Consensus 1 ~~~~~Y~~~~ei~~~l~~la~~~p~~v~~~~IG~S~eGR~i~~l~i~~~-------~~~kp~v~i~~giHarE~i~~~~~ 73 (300)
T cd03871 1 HSYEKYNNWETIEAWTEQVASENPDLISRSQIGTTFEGRPIYLLKVGKP-------GVNKPAIFMDCGFHAREWISPAFC 73 (300)
T ss_pred CCccccCCHHHHHHHHHHHHHHCCCceEEEEeeeCCCCCeeEEEEEccC-------CCCCCeEEEeccccccccccHHHH
Confidence 4689999999999999999999999999999999999999999999976 346899999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcCC------c---cccccccccceeEEEE
Q psy11074 121 VFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQK------R---MQDFNYVHSNCFEITM 187 (710)
Q Consensus 121 ~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~p------g---~~d~~y~~~~~~~~t~ 187 (710)
++++++|+.+|+.|+.+++||++++|+|||++|||||+++++.+| ||+.. | +|||++.|..+. .
T Consensus 74 l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~c~GVDLNRNf~~~w~~~g---~ 150 (300)
T cd03871 74 QWFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGSSCIGTDPNRNFNAGWCTVG---A 150 (300)
T ss_pred HHHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCCCCccccccCcCCCCccCCCC---C
Confidence 999999999999999999999999999999999999999988876 66321 3 489999997532 1
Q ss_pred eec-cC-CCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEEE
Q psy11074 188 ELS-CC-KYPKASDLKHYWAANKESLIKLIENVHRGVYGIVT 227 (710)
Q Consensus 188 e~~-~~-~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V~ 227 (710)
... |. .|++...++ |++.+++..++......+++++.
T Consensus 151 s~~pc~~~Y~G~~p~S---EpEt~Al~~~~~~~~~~~~~~l~ 189 (300)
T cd03871 151 SRNPCDETYCGSAPES---EKETKALADFIRNNLSSIKAYLT 189 (300)
T ss_pred CCCCCCCCcCCCCCCC---CHHHHHHHHHHHhcCcceeEEEE
Confidence 222 43 589988888 89999999998765444555543
No 46
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.97 E-value=3.9e-30 Score=267.71 Aligned_cols=172 Identities=16% Similarity=0.267 Sum_probs=147.6
Q ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHH
Q psy11074 43 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVF 122 (710)
Q Consensus 43 ~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~ 122 (710)
|++||+|+||.+||++|+++||+++++.+||+|+|||+|++|+|++. ....||.|++.|++|||||+|++++++
T Consensus 1 ~~~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EgR~I~~l~i~~~------~~~~k~~i~i~~giHarEwi~~~~~l~ 74 (298)
T cd06247 1 YTKYHPMDEIYNWMDQIKEKYSELVSQHYLGCTYELRPMYYLKIGWP------SDKPKKIIWMDCGIHAREWISPAFCQW 74 (298)
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCcEEEEeceECcCCceEEEEEeecC------CCCCCcEEEEeccccccccccHHHHHH
Confidence 67899999999999999999999999999999999999999999975 134589999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcC------Cc---cccccccccceeEEEEee
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ------KR---MQDFNYVHSNCFEITMEL 189 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~------pg---~~d~~y~~~~~~~~t~e~ 189 (710)
++++|+.+|..|+.+++||++++|+|||++|||||+++++.++ ||+. .| +|||.+.|..+- ..-
T Consensus 75 ~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~wRknr~~~~~~~c~GVDLNRNf~~~w~~~g---~s~ 151 (298)
T cd06247 75 FVKEILQNYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTDRLWRKNRSPHNNGTCYGVDLNRNFNSQWCSIG---ASR 151 (298)
T ss_pred HHHHHHHHhccCHHHHHHHhcCeEEEEeeecCCcceEEecccceecccCCCCCCCCccccccccCCCCccccCC---CCC
Confidence 9999999999999999999999999999999999999987775 6632 13 489999997532 223
Q ss_pred ccC--CCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEE
Q psy11074 190 SCC--KYPKASDLKHYWAANKESLIKLIENVHRGVYGIV 226 (710)
Q Consensus 190 ~~~--~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V 226 (710)
.|| .|++...++ |++.+++..++......++.++
T Consensus 152 ~p~~~~y~G~~pfS---EpEt~ai~~~~~~~~~~i~~~l 187 (298)
T cd06247 152 NCRSNIFCGTGPES---EPETKAVARLIESKKSDILCYL 187 (298)
T ss_pred CCCCCCcCCCCCCC---cHHHHHHHHHHHhcCcceEEEE
Confidence 444 688888888 8999999999876544444444
No 47
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.97 E-value=5.8e-30 Score=262.52 Aligned_cols=202 Identities=20% Similarity=0.190 Sum_probs=154.4
Q ss_pred CCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhh
Q psy11074 377 YPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLN 456 (710)
Q Consensus 377 ~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~ 456 (710)
.+..+++..+|+|.+||+|++++|++.... .....+||.|+|.|++||+|++|+++++.++++|+. .++.++.|++
T Consensus 9 ~~~~~~~~~iG~S~eGr~i~~l~i~~~~~~-~~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~---~~~~~~~Ll~ 84 (258)
T cd06235 9 NNQYLKRKILCTTLGGLPVPLLTITSPSSK-SIPIKKKKVIVITARQHPGETNSSFVMQGFIDFLLS---DSPEAQYLRE 84 (258)
T ss_pred CCCceEEEEeEEcCCCCeeeEEEEeCCccc-ccccCCCcEEEEECCcCCCChHHHHHHHHHHHHHhc---CCHHHHHHHh
Confidence 567899999999999999999999932110 112357999999999999999999999999999987 4578999999
Q ss_pred cccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC----CceEEE
Q psy11074 457 STDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN----PFVLSG 532 (710)
Q Consensus 457 ~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~----~~~~~~ 532 (710)
++.|+||||+||||+.+ ..+|.|+.|+||||||.. ..+.++||+++++++++++ ++++++
T Consensus 85 ~~~~~iiPm~NPDG~~~-----------g~~R~n~~GvDLNR~w~~-----p~~~~~PE~~~~~~~i~~~~~~~~~~~~i 148 (258)
T cd06235 85 NFIFKIIPMLNPDGVIH-----------GNYRCSLSGIDLNRQWKN-----PDKKLHPEIYHVKQLIKKLSQERNIALFI 148 (258)
T ss_pred ccEEEEEccccccceee-----------cCCcCCCCCCCcCCCCCC-----CCcccCcHHHHHHHHHHHHhccCCceEEE
Confidence 99999999999999974 246999999999999986 5668999999999999998 899999
Q ss_pred EecCCcc---cccccccCCCCCC------------CCccccCCcccccccceEEeecCchhhhccccCCe-EEEEEEecC
Q psy11074 533 NLHGGAV---ARDYASRNPMMAP------------GHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNC-FEITMELSC 596 (710)
Q Consensus 533 ~lH~~~~---~~~y~~~~~~~~~------------~~~~~~~~~~g~~~~~~~y~~~G~~~D~~y~~~~~-~~~T~Elg~ 596 (710)
|+|+++. ...|+........ ...| ..|......-..-....|++..+.+...++ .+||+|++-
T Consensus 149 DlH~~s~~~~~F~yg~~~~~~~~~~~~~~~~p~~~~~~~-~~f~~~~c~f~~~~~k~~tar~~~~~~~~~~~syTlE~sf 227 (258)
T cd06235 149 DLHGHSRKKNSFMYGCSNSDDPLNYYKERLFPKLLSKLC-PYFSFSSCSFKVQKDKEGTARVALWRELGIPNSYTLETSF 227 (258)
T ss_pred ecccccccCCeeeecCCCCCcHHHHHHHHHHHHHHHhhC-cccCccccccCCCCCCCCcHHHHHHHHcCCceEEEEeeec
Confidence 9999886 3456554432111 0001 122211100001122457888888877666 899999997
Q ss_pred CCC
Q psy11074 597 CKY 599 (710)
Q Consensus 597 ~~~ 599 (710)
+++
T Consensus 228 ~g~ 230 (258)
T cd06235 228 GGY 230 (258)
T ss_pred ccc
Confidence 655
No 48
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.97 E-value=5e-30 Score=266.79 Aligned_cols=169 Identities=17% Similarity=0.285 Sum_probs=144.9
Q ss_pred ccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 45 ~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
.||+++||.+||++|+++||+++++.+||+|+|||+|++++|+++ . ...||.|++.|++|||||+|++++++++
T Consensus 1 ~Y~~~~ei~~~l~~L~~~~p~~v~l~~iG~S~EGR~i~~l~i~~~---~---~~~k~~i~i~~giHarEwi~~~~~~~~i 74 (300)
T cd03872 1 VYHPLEEIESWMFYMNKTHSDLVHLFSIGKSYEGRSLYVLKLGKR---T---RSYKKAVWIDCGIHAREWIGPAFCQWFV 74 (300)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEEecC---C---CCCCCeEEEecccccccccCHHHHHHHH
Confidence 389999999999999999999999999999999999999999976 1 2369999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcCC------c---cccccccccceeEEEEeec-
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQK------R---MQDFNYVHSNCFEITMELS- 190 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~p------g---~~d~~y~~~~~~~~t~e~~- 190 (710)
++|+.+|..|+.+++||++++|+|||++|||||++++++++ ||+.. | +|||.|.|...- ...+
T Consensus 75 ~~Ll~~~~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~wrknR~~~~~~~c~GVDLNRNf~~~w~~~g---~s~~P 151 (300)
T cd03872 75 KEALNSYQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRYQCRGVDANRNWKVKWCDEG---ASLHP 151 (300)
T ss_pred HHHHHhccCChHHHHHHhhCeEEEEeeecCCcceeeeccchhhhccCCCCCCCCccccccccccCcccCCCC---CCCCC
Confidence 99999999999999999999999999999999999988886 66431 2 589999997432 1223
Q ss_pred c-CCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEE
Q psy11074 191 C-CKYPKASDLKHYWAANKESLIKLIENVHRGVYGI 225 (710)
Q Consensus 191 ~-~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~ 225 (710)
| ..|+++..++ |++.+++..++.+....++..
T Consensus 152 cs~~Y~G~~pfS---EpEt~al~~~~~~~~~~i~~~ 184 (300)
T cd03872 152 CDDTYCGPFPES---EPEVKAVAQFLRKHRKHVRAY 184 (300)
T ss_pred CCCCCCCCCCCC---cHHHHHHHHHHHhCCccceEE
Confidence 4 3688888888 899999999987644334433
No 49
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.97 E-value=7.3e-30 Score=266.69 Aligned_cols=165 Identities=20% Similarity=0.329 Sum_probs=144.5
Q ss_pred CCCCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHH
Q psy11074 41 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALM 120 (710)
Q Consensus 41 ~~~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~ 120 (710)
++|.+||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+.+ ...||+|++.|++|||||+|++++
T Consensus 1 ~~~~~Y~~~~ei~~~l~~L~~~~p~~v~~~~iG~S~eGR~I~~l~is~~-------~~~kp~v~i~~giHarE~i~~~~~ 73 (301)
T cd03870 1 FNYATYHTLDEIYDFMDLLVAEHPNLVSKLQIGRSYEGRPIYVLKFSTG-------GSNRPAIWIDAGIHSREWITQATG 73 (301)
T ss_pred CCccccCCHHHHHHHHHHHHHHCCCceEEEecccCCCCCeEEEEEEecC-------CCCCceEEEeccccccchhhHHHH
Confidence 4689999999999999999999999999999999999999999999976 236999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcCC------c---cccccccccceeEEEE
Q psy11074 121 VFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQK------R---MQDFNYVHSNCFEITM 187 (710)
Q Consensus 121 ~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~p------g---~~d~~y~~~~~~~~t~ 187 (710)
++++++|+.+|+.|+.++++|++++|+|||++|||||+++++.++ ||+.. | +|||+|.|+.+.. .
T Consensus 74 l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~~~GVDLNRNf~~~w~~~g~-s- 151 (301)
T cd03870 74 VWFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGSLCVGVDPNRNWDAGFGGAGA-S- 151 (301)
T ss_pred HHHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCCCccccccccCCCcccCcCCC-C-
Confidence 999999999999999999999999999999999999999987766 66431 3 4899999975321 1
Q ss_pred eecc-CCCCCCcchHHHHHHhhHHHHHHHHH
Q psy11074 188 ELSC-CKYPKASDLKHYWAANKESLIKLIEN 217 (710)
Q Consensus 188 e~~~-~~~p~~~~l~~~w~~n~~al~~~~~~ 217 (710)
.-.| ..|+++..++ |++.+++..++..
T Consensus 152 ~~p~~~~Y~G~~pfS---EpEt~av~~~~~~ 179 (301)
T cd03870 152 SNPCSETYHGPYANS---EVEVKSIVDFVKS 179 (301)
T ss_pred CCCCccccCCCCCCc---cHHHHHHHHHHhh
Confidence 1224 3689999888 8999999988864
No 50
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.96 E-value=1.7e-29 Score=264.13 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=147.7
Q ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHH
Q psy11074 43 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVF 122 (710)
Q Consensus 43 ~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~ 122 (710)
|++||+|+||.+||++|+++||+++++.+||+|+|||+|++++|+++ + ...||+|++.|++|||||+|++++++
T Consensus 2 ~~~Y~~~~ei~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is~~---~---~~~k~~v~i~~giHarE~i~~~~~l~ 75 (300)
T cd06246 2 YEQYHSLNEIYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVSGK---E---QTAKNAIWIDCGIHAREWISPAFCLW 75 (300)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEeCC---C---CCCCCeEEEecccCccchhhHHHHHH
Confidence 78999999999999999999999999999999999999999999975 1 34699999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcC------Cc---cccccccccceeEEEEee
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ------KR---MQDFNYVHSNCFEITMEL 189 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~------pg---~~d~~y~~~~~~~~t~e~ 189 (710)
++++|+..|..|+.+++||++++|+|||++|||||++++++++ ||+. .| +|||.|.|...-. ..-
T Consensus 76 ~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~--s~~ 153 (300)
T cd06246 76 FVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYANSHCIGTDLNRNFDAKWCCEGA--SSS 153 (300)
T ss_pred HHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCCCCccCcccccccccccCCCCC--CCC
Confidence 9999999999999999999999999999999999999988776 6632 13 4899999975321 112
Q ss_pred cc-CCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEE
Q psy11074 190 SC-CKYPKASDLKHYWAANKESLIKLIENVHRGVYGIV 226 (710)
Q Consensus 190 ~~-~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V 226 (710)
.| ..|++...++ |++.+++..++......++..|
T Consensus 154 p~~~~y~G~~p~S---EpEt~av~~~~~~~~~~i~~~i 188 (300)
T cd06246 154 SCSETYCGPYPES---EPEVKAVASFLRRHINQIKAYI 188 (300)
T ss_pred CCCCCcCCCCCCc---cHHHHHHHHHHHhCCcceeEEE
Confidence 34 3688888888 8999999999876443355444
No 51
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.96 E-value=4.8e-29 Score=255.79 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=146.2
Q ss_pred cccccCCceEEEEEEeccCCC---------------CC----CCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcC
Q psy11074 386 IGKSVQGRNLWAVEITHDVDN---------------PD----GRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDG 446 (710)
Q Consensus 386 iG~S~eGr~i~~l~is~~~~~---------------~~----~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~ 446 (710)
+|+|.|||+|.++.|++..+. |. .....+|.|+|.++|||+||+|+++++.++++|+..
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~-- 78 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAA-- 78 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHc--
Confidence 699999999999999953221 21 122468999999999999999999999999999984
Q ss_pred CCHHHHHHhhcccEEEEEeeCcccchh-cc----------cCCCCCC----CCCCCCCCCCcccCCCCCCCCCcccCCCC
Q psy11074 447 KDDRITQLLNSTDIYIVPSINPDGFAA-AK----------EGKCDSL----DGYVGRKNAHGVDLNRNFPDQFEYEAKKV 511 (710)
Q Consensus 447 ~~~~~~~ll~~~~i~ivP~~NPDG~~~-~~----------~~~~~~~----~~~~~R~n~~GvDlNRnf~~~~~~~~~~~ 511 (710)
.++.++++|+++.|+|+|++||||++. .+ +.++.++ .|..+|.||.|+||||||.. +
T Consensus 79 ~~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~r~~~~~wp~~R~n~~g~DLNRD~~~--------~ 150 (271)
T cd06238 79 QGDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQDREHNEPWPGGRTNHYWFDLNRDWLP--------L 150 (271)
T ss_pred CCHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhhhhcccCCccccccccCccccccccc--------c
Confidence 688999999999999999999999995 32 3334322 36667999999999999975 7
Q ss_pred ChHHHHHHHHHHHhCCceEEEEecCCccccc--ccc-----cCCCCCC---------CCcc-------ccCCcccccccc
Q psy11074 512 YEPETQAIMNFIYSNPFVLSGNLHGGAVARD--YAS-----RNPMMAP---------GHAC-------GFDFKDGITNGN 568 (710)
Q Consensus 512 sepEt~al~~~~~~~~~~~~~~lH~~~~~~~--y~~-----~~~~~~~---------~~~~-------~~~~~~g~~~~~ 568 (710)
++||||++.+++.+++|++++|+|+++.... +.+ .++.... +... +..|..|.. -.
T Consensus 151 s~pEtra~~~~~~~~~p~~~~D~H~~g~~~~~~~~P~~~~~~np~~~p~~~~~~~~~g~~~~~al~~~G~~Y~t~~~-~d 229 (271)
T cd06238 151 TQPESRGRLAAYHEWRPNVVVDFHEMGTNSTYFFAPGAPPRTNPLTPDQNRDLTATIGRNHAKAFDEIGWLYFTREV-FD 229 (271)
T ss_pred cCHHHHHHHHHHHhcCCeEEEEeccCCCccceEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcEEeccc-cc
Confidence 9999999999999999999999999663111 111 1111110 0000 012222222 25
Q ss_pred eEEeecCchhhhccccCCeEEEEEEecC
Q psy11074 569 YWYKVTGGMQDFNYVHSNCFEITMELSC 596 (710)
Q Consensus 569 ~~y~~~G~~~D~~y~~~~~~~~T~Elg~ 596 (710)
.||+..|++..|. +|.+++|+|.+.
T Consensus 230 ~~ypg~g~s~~~~---~g~ig~l~E~~~ 254 (271)
T cd06238 230 DFYPGYGSTYPDL---NGAIGMLYEQAS 254 (271)
T ss_pred ccccCcCcchhhh---cCceeEEEEecC
Confidence 6788888766654 678899999985
No 52
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.96 E-value=2.3e-29 Score=250.13 Aligned_cols=183 Identities=35% Similarity=0.579 Sum_probs=148.6
Q ss_pred EEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccC
Q psy11074 417 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDL 496 (710)
Q Consensus 417 v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDl 496 (710)
|+|+||+||+|++|+++++.++++|+..+... +.++++.+|+|+|++||||+++. .+|.|..|+||
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~---~~l~~~~~i~iiP~~NPdG~~~~-----------~~R~n~~g~Dl 66 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRD---TKLLENGRLLVVPVLNPDGYEAV-----------NWRKNANGVDL 66 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcch---HHHHhCCeEEEEeCcccccceee-----------eEEeCCCCcCc
Confidence 58999999999999999999999999976443 88999999999999999999752 36778889999
Q ss_pred CCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCCcccccccccCCCCCC---------CCcccc---CCcccc
Q psy11074 497 NRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAP---------GHACGF---DFKDGI 564 (710)
Q Consensus 497 NRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~~~~~---------~~~~~~---~~~~g~ 564 (710)
|||||..|.. .+.++||++++++++.++++++++|+|+++....|+..+..... +..... ....+.
T Consensus 67 NR~f~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 144 (196)
T cd00596 67 NRNFPGLWGK--GPLSEPETRALAELIQQRKVDLYIDLHSGSLGVLYPYSHSDTPPPDAEIPKALAQLLADAARGSKYGV 144 (196)
T ss_pred cCCCCCcccC--CCCCcHHHHHHHHHHHhCCceEEEEEecCCceEEecCCCCCCCCCCHHHHHHHHHHHHHhccCCCCce
Confidence 9999998863 45799999999999999999999999999775555444322110 000001 112333
Q ss_pred cccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhh
Q psy11074 565 TNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKES 615 (710)
Q Consensus 565 ~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ 615 (710)
.....+|+..|++.||+|...++++||+|+|++++|+.+.+...|+.++..
T Consensus 145 ~~~~~~~~~~g~~~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd00596 145 GFGAKWYETGGGFDDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEA 195 (196)
T ss_pred eecceEEEcCCchhhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 344555899999999999989999999999999999999999999998865
No 53
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.96 E-value=9.7e-29 Score=247.34 Aligned_cols=136 Identities=31% Similarity=0.475 Sum_probs=125.4
Q ss_pred HHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHH
Q psy11074 373 TVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRIT 452 (710)
Q Consensus 373 l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~ 452 (710)
+.+++|+.+++..+|+|++||+|++++|+ .+||+|++.|++||+|+.|+++++.|+++|+.+ .++.++
T Consensus 2 ~~~~~p~~v~~~~iG~S~eGrpI~~l~ig----------~g~~~vli~agiHG~E~~g~~all~ll~~L~~~--~~~~~~ 69 (231)
T cd06239 2 LLEKLPAKFKVEVIGKSVEGRPIYSVKFG----------SGKIKILLWSQMHGNESTTTKALLDLLNFLGTS--KDQEAK 69 (231)
T ss_pred hHHHCCCeeEEEEeeECCCCCeEEEEEEc----------CCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHC--CCHHHH
Confidence 46789999999999999999999999999 368999999999999999999999999999984 455678
Q ss_pred HHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEE
Q psy11074 453 QLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSG 532 (710)
Q Consensus 453 ~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~ 532 (710)
.+|++.+|+|||++||||++. .+|.|++|+||||||+. .++||+++++++++++++++++
T Consensus 70 ~ll~~~~v~iiP~lNPDG~~~------------~~R~N~~GvDLNRdf~~--------~s~PEtr~l~~~~~~~~pd~~i 129 (231)
T cd06239 70 KILDEVTLVIIPMLNPDGAEA------------YTRVNANGVDLNRDAQD--------LSQPESRLLRDVYDGFQPDFCF 129 (231)
T ss_pred HHHhCCEEEEEeccCccHHHH------------cccCCCcCCcCCCCCCC--------CChHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999975 36889999999999986 6899999999999999999999
Q ss_pred EecCCccc
Q psy11074 533 NLHGGAVA 540 (710)
Q Consensus 533 ~lH~~~~~ 540 (710)
|+|+++..
T Consensus 130 DlH~~~~~ 137 (231)
T cd06239 130 NLHDQRTI 137 (231)
T ss_pred EECCCCCc
Confidence 99998864
No 54
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.96 E-value=2.5e-28 Score=259.68 Aligned_cols=119 Identities=37% Similarity=0.637 Sum_probs=110.9
Q ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHH
Q psy11074 43 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVF 122 (710)
Q Consensus 43 ~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~ 122 (710)
|++||+|+||.++|++|+++||+++++.+||+|+|||+|++|+|+++ .......||+||+.|++|||||+|++++++
T Consensus 1 ~~~Y~ty~ei~~~L~~La~~~P~lv~l~~IG~S~EGR~I~~l~Is~~---~~~~~~~Kp~I~i~~giHarEwig~~~~l~ 77 (360)
T cd06905 1 FSRYYRYDELTAALQAWASAYPQLCSLESIGKSYEGRDIWLLTLTNQ---ATGPDREKPAFWIDANIHATEVTGSAVALY 77 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEecCC---CCCCCCCCcEEEEecCCCCCchHHHHHHHH
Confidence 67899999999999999999999999999999999999999999976 223345799999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhc-CC
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE-GN 164 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~-~~ 164 (710)
++++|+.+|+.|+++++||++++|+|||++||||++++++ ++
T Consensus 78 li~~Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~~~~~~ 120 (360)
T cd06905 78 VIQTLLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQALTHPP 120 (360)
T ss_pred HHHHHHHhccCCHHHHHHHhcCeEEEEeeeCCChheEEeeccc
Confidence 9999999999999999999999999999999999999887 44
No 55
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.95 E-value=3.8e-28 Score=255.27 Aligned_cols=168 Identities=22% Similarity=0.344 Sum_probs=143.8
Q ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHH
Q psy11074 43 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVF 122 (710)
Q Consensus 43 ~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~ 122 (710)
|++||+|+||.++|++|+++||+++++.+||+|+|||+|++++|+++ .. ....||.|++.|++|||||+|++++++
T Consensus 1 ~~~Y~~~~ei~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~I~~~---~~-~~~~k~~v~i~~giHarE~~~~~~~l~ 76 (304)
T cd06248 1 FDSYHPLEDHLQWLRDLQAAFPNNSELFTIGKSYEGRTILGLHIWGS---GG-EKGSKPAIVIHGTVHAREWISTMTVEY 76 (304)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCceEEeceEECCCCCeEEEEEEecC---CC-CCCCCcEEEEECCcCcCccccHHHHHH
Confidence 67999999999999999999999999999999999999999999976 21 135699999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcC------Cc---cccccccccceeEEEEee
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ------KR---MQDFNYVHSNCFEITMEL 189 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~------pg---~~d~~y~~~~~~~~t~e~ 189 (710)
++++|+.+|..|+.+++||++++|+|||++||||++++++.++ ||+. .| +|||.+.|...-. ..-
T Consensus 77 ~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~--s~~ 154 (304)
T cd06248 77 LAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGSSCVGTDLNRNWPYKWDGGGS--STN 154 (304)
T ss_pred HHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCCCceeecCCCCCCCcccCCCC--CCC
Confidence 9999999999999999999999999999999999999987765 6532 13 4899999975211 111
Q ss_pred cc-CCCCCCcchHHHHHHhhHHHHHHHHHHh
Q psy11074 190 SC-CKYPKASDLKHYWAANKESLIKLIENVH 219 (710)
Q Consensus 190 ~~-~~~p~~~~l~~~w~~n~~al~~~~~~~~ 219 (710)
.| ..|+++..++ |++.+++..++....
T Consensus 155 p~s~~Y~G~~~~s---EpEt~av~~~~~~~~ 182 (304)
T cd06248 155 PCSETYRGESPGD---APEAKALAAFLNKLA 182 (304)
T ss_pred CCCCCcCCCCCCc---cHHHHHHHHHHHhcc
Confidence 24 3688888888 899999999887643
No 56
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=2.7e-28 Score=250.75 Aligned_cols=157 Identities=25% Similarity=0.346 Sum_probs=131.6
Q ss_pred HHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCC-C-CCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhc
Q psy11074 368 AFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDN-P-DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 445 (710)
Q Consensus 368 ~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~-~-~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y 445 (710)
+||++|+++||. +++.+||+|.+||+|++++|+..... + +....+||.|+|+||+||+|+.|.++++.|+++|+..+
T Consensus 1 a~~~~La~~~~~-v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~ 79 (266)
T cd06241 1 AFLERLAAASPL-IRLESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGK 79 (266)
T ss_pred CHHHHHHHhCCc-eEEEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcc
Confidence 478999999974 89999999999999999999932110 0 11235799999999999999999999999999999842
Q ss_pred CCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCC---CCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHH
Q psy11074 446 GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDG---YVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNF 522 (710)
Q Consensus 446 ~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~---~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~ 522 (710)
. .++|+++.|+|||++||||+++.....|.+.+. ..+|.|++|+||||||+. .++|||||++++
T Consensus 80 --~---~~ll~~~~i~ivP~~NpDG~~~~~~~~r~~q~gp~~~~~R~na~g~DLNRdf~~--------~~~pEtra~~~~ 146 (266)
T cd06241 80 --K---DALLDKVVLVFIPVFNVDGHERRSPYNRTNQNGPEEYGWRGNARNLNLNRDFIK--------LDAPEMRAFAKL 146 (266)
T ss_pred --h---HHHHhCCEEEEEeCCCccHHHhcccccccccCCCCccCceecccceecCCCCcc--------cCCHHHHHHHHH
Confidence 2 289999999999999999999875554443322 347999999999999986 679999999999
Q ss_pred HHhCCceEEEEecCCc
Q psy11074 523 IYSNPFVLSGNLHGGA 538 (710)
Q Consensus 523 ~~~~~~~~~~~lH~~~ 538 (710)
+.+++|++++|+|+.+
T Consensus 147 ~~~~~p~~~iD~H~~~ 162 (266)
T cd06241 147 FNKWNPDLFIDNHVTD 162 (266)
T ss_pred HHHhCCCEEEEeccCC
Confidence 9999999999999864
No 57
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=1.2e-27 Score=240.64 Aligned_cols=132 Identities=29% Similarity=0.446 Sum_probs=116.3
Q ss_pred cccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEe
Q psy11074 386 IGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPS 465 (710)
Q Consensus 386 iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~ 465 (710)
||+|+|||+|++++|++..+........||.|+++|++||+|++|+++++.++++|+. ..+++++++|+++.|+|+|+
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~--~~~~~~~~lL~~~~i~ivP~ 78 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEPAGREALLIIARDLAF--GEDEELVPLLHQTTVLFVPT 78 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHhcceEEEEeC
Confidence 6999999999999999322101112347899999999999999999999999999986 57888999999999999999
Q ss_pred eCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCC-cc
Q psy11074 466 INPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGG-AV 539 (710)
Q Consensus 466 ~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~-~~ 539 (710)
+||||+++ .+|.|+.|+||||||+. .++|||+++++++.+++|++++|+|++ +.
T Consensus 79 ~NPDG~~~------------~~R~n~~g~DlNRd~~~--------~~~pEt~al~~~~~~~~p~~~iDlHe~~g~ 133 (236)
T cd06243 79 ANPDGREA------------DTRSNADGIDINRDHLL--------LNTPEAQALASVLRDYRPDVVVDAHEYPGA 133 (236)
T ss_pred cCccHhhc------------CCcCCCCCcccCCCCCC--------CCCHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence 99999975 47999999999999986 689999999999999999999999998 43
No 58
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.95 E-value=1.8e-27 Score=250.11 Aligned_cols=167 Identities=25% Similarity=0.466 Sum_probs=141.5
Q ss_pred CccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHH
Q psy11074 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFL 123 (710)
Q Consensus 44 ~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l 123 (710)
..|++|+||.++|++|+++||+++++.+||+|+|||+|++++|+++ +. ....||+|++.|++|||||+|+++++++
T Consensus 2 ~~y~~y~ei~~~l~~l~~~~p~~v~~~~iG~S~eGR~i~~l~i~~~---~~-~~~~kp~i~i~~~iH~~E~~g~~~~l~~ 77 (295)
T cd03859 2 RGYHNYLEMVDELNAAAAAYPNLTKVKSIGKSYEGRDIIAVKISDN---VA-TDENKPEVLYTSTHHAREWLSLEMAIYL 77 (295)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEeeeecCCCCeEEEEEEecC---CC-CCCCCCEEEEECCcCccchhhHHHHHHH
Confidence 4799999999999999999999999999999999999999999986 21 2346999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhc--CCC----CCcC--------Cc---cccccccccceeEEE
Q psy11074 124 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE--GNL----NTKQ--------KR---MQDFNYVHSNCFEIT 186 (710)
Q Consensus 124 ~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~--~~~----NR~~--------pg---~~d~~y~~~~~~~~t 186 (710)
+++|+.+|..|+.+++||++++|+|||++||||++++++ .++ ||+. .| +|||.|.|+.|..-.
T Consensus 78 i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~~~~~~~~~GvDLNRNf~~~w~~~~~g~ 157 (295)
T cd03859 78 MHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDNSGDISSSDGVDLNRNYGYKWGYDSGGS 157 (295)
T ss_pred HHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCCCCCcCcceeecCCCCCCcccCCCCCCC
Confidence 999999998899999999999999999999999999887 332 5432 12 479999998762111
Q ss_pred Eeecc-CCCCCCcchHHHHHHhhHHHHHHHHH
Q psy11074 187 MELSC-CKYPKASDLKHYWAANKESLIKLIEN 217 (710)
Q Consensus 187 ~e~~~-~~~p~~~~l~~~w~~n~~al~~~~~~ 217 (710)
..-.| ..|+++..++ |++.+++..++.+
T Consensus 158 s~~p~~~~y~G~~p~s---epEt~av~~~~~~ 186 (295)
T cd03859 158 SNDPSSETYRGPSAFS---EPETQAIRDFVES 186 (295)
T ss_pred CCCCCCCCccCCCCCc---hHHHHHHHHHHHh
Confidence 11123 3688888888 8999999999876
No 59
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=2.4e-27 Score=239.33 Aligned_cols=134 Identities=32% Similarity=0.298 Sum_probs=116.2
Q ss_pred cccccCCceEEEEEEeccCC---------------CCC----CC----CCCcceEEEeeccccCccchHHHHHHHHHHHH
Q psy11074 386 IGKSVQGRNLWAVEITHDVD---------------NPD----GR----TLMKPMFKYVANMHGDETVGYALMVFLIQYLV 442 (710)
Q Consensus 386 iG~S~eGr~i~~l~is~~~~---------------~~~----~~----~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~ 442 (710)
||+|.|||+|+++.|+++.. +|. .+ ...++.+++++++||+|+.|+++++.++++|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999995430 111 11 12577888889999999999999999999999
Q ss_pred HhcCC--------------CHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccC
Q psy11074 443 LKDGK--------------DDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEA 508 (710)
Q Consensus 443 ~~y~~--------------~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~ 508 (710)
.++.. ++++++||+++.|+|+|++||||+++ .+|.|++|+||||||..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~------------~~R~Na~G~DLNRD~~~------ 142 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVA------------GTRENANGFDLNRDNSF------ 142 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCccee------------eeecCCCccccCCCCCc------
Confidence 87632 88999999999999999999999975 37999999999999976
Q ss_pred CCCChHHHHHHHHHHHhCCceEEEEecCCcc
Q psy11074 509 KKVYEPETQAIMNFIYSNPFVLSGNLHGGAV 539 (710)
Q Consensus 509 ~~~sepEt~al~~~~~~~~~~~~~~lH~~~~ 539 (710)
.++||||++++++.+++|++++|+|+...
T Consensus 143 --~sqpEt~av~~~~~~w~P~~~~dlHg~~~ 171 (268)
T cd06244 143 --QTQPETQAIVALIAEWNPASFLDLHGYVE 171 (268)
T ss_pred --ccCHHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 68999999999999999999999998764
No 60
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.95 E-value=3.3e-27 Score=243.23 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=127.5
Q ss_pred cEEEEEcccccCCceEEEEEEeccCCCCC------------------CCCCCcceEEEeeccccCccchHHHHHHHHHHH
Q psy11074 380 LVRAETIGKSVQGRNLWAVEITHDVDNPD------------------GRTLMKPMFKYVANMHGDETVGYALMVFLIQYL 441 (710)
Q Consensus 380 ~~~~~~iG~S~eGr~i~~l~is~~~~~~~------------------~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l 441 (710)
.++...+|+|.+||+|++++||+..+... ....+||.|+|.|++||+||.|+.++++++++|
T Consensus 15 y~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~ll~~L 94 (304)
T cd06236 15 YYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGFLKFL 94 (304)
T ss_pred EEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHHHHHH
Confidence 37889999999999999999994321100 012479999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHH
Q psy11074 442 VLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMN 521 (710)
Q Consensus 442 ~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~ 521 (710)
+.+ .++.++.|+++++|+||||+||||+++. .+|.||.|+||||+|.. +.+.++||++|+++
T Consensus 95 l~~--~d~~a~~L~~~~~~~IvPmlNPDGv~~g-----------~~R~~~~G~DLNR~y~~-----p~~~~~Pei~aik~ 156 (304)
T cd06236 95 LNK--DDPRAALLRRRFVFKLIPMLNPDGVYRG-----------HYRTDTRGVNLNRVYLN-----PDPELHPSIYAIKK 156 (304)
T ss_pred HhC--CCHHHHHHHhCCeEEEEEeEcccccccC-----------ccccCCcCCCcCcCCCC-----CCcccCHHHHHHHH
Confidence 984 5889999999999999999999999853 45999999999999876 66789999999999
Q ss_pred HHHhC----CceEEEEecCCcc---cccccccC
Q psy11074 522 FIYSN----PFVLSGNLHGGAV---ARDYASRN 547 (710)
Q Consensus 522 ~~~~~----~~~~~~~lH~~~~---~~~y~~~~ 547 (710)
+++.+ ++++++|+|+.+. ...|+...
T Consensus 157 ~i~~~~~~~~i~~yiDlH~hs~~~~~F~Yg~~~ 189 (304)
T cd06236 157 LILYLHEESRLAFYIDLHAHASKRGCFIYGNAL 189 (304)
T ss_pred HHHHhhccCCceEEEEecccccccceEeeecCC
Confidence 99875 5999999999987 45665443
No 61
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.95 E-value=7.3e-27 Score=235.69 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=124.1
Q ss_pred CCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhc
Q psy11074 378 PHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNS 457 (710)
Q Consensus 378 p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~ 457 (710)
+..+++..+|+|++||+|++++|++...++ ....+||.|+|.|++|++|+.|+.++..+++.|+. +++.++.|+++
T Consensus 11 ~~~~~~~~lg~S~eGR~i~~LtIt~~~~~~-~~~~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~---~~~~a~~Lr~~ 86 (261)
T cd06907 11 SKFCKLRVLCRTLAGNTVYLLTITSPSSNP-SLAAAKKAVVLTARVHPGETNASWMMKGFLDFLTS---NSPDAQLLRDT 86 (261)
T ss_pred CCceEEEEEEECCCCCeeeEEEEcCCCccc-cccCCCCEEEEECCcCCChHHHHHHHHHHHHHHhc---CCHHHHHHHhc
Confidence 357899999999999999999999422211 12247999999999999999999999999999986 68999999999
Q ss_pred ccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHh----CCceEEEE
Q psy11074 458 TDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYS----NPFVLSGN 533 (710)
Q Consensus 458 ~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~----~~~~~~~~ 533 (710)
++|+||||+||||+.+ ...|+++.|+||||||.. +.+..+||+.+++++++. .++++++|
T Consensus 87 ~~f~IvPmlNPDGv~~-----------G~~R~~~~G~DLNR~w~~-----p~~~~~P~i~~~k~li~~l~~~~~i~~ylD 150 (261)
T cd06907 87 FIFKIVPMLNPDGVIV-----------GNYRCSLAGRDLNRNYKT-----PLKDSFPTIWYTKNMVKRLLEEREVILYCD 150 (261)
T ss_pred CCEEEEEeecCccccc-----------cCCcCCCcCCCCCcCCCC-----CCcccCchHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999999984 356999999999999987 334578998888777655 37999999
Q ss_pred ecCCcc---ccccccc
Q psy11074 534 LHGGAV---ARDYASR 546 (710)
Q Consensus 534 lH~~~~---~~~y~~~ 546 (710)
|||.+. ...|+..
T Consensus 151 lHghs~~~~~F~yG~~ 166 (261)
T cd06907 151 LHGHSRKNNVFMYGCE 166 (261)
T ss_pred eccchhccceEeecCC
Confidence 999887 3455543
No 62
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.94 E-value=8.6e-27 Score=226.65 Aligned_cols=154 Identities=28% Similarity=0.320 Sum_probs=120.9
Q ss_pred EEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccC
Q psy11074 417 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDL 496 (710)
Q Consensus 417 v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDl 496 (710)
++++||+||+|++|.+++++|++.|+.. .|++.+|+|||++||||+++ ++|.|++|+||
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~---------~l~~~~i~ivP~~NPdG~~~------------~~R~n~~gvDL 59 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL---------ILRGLSWYVIPVLNPDGLLR------------ATRCNANGVDL 59 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH---------hhcCCeEEEEeCcCccHHhh------------CcccCCCCcCh
Confidence 5899999999999999999999999974 27788999999999999975 46888999999
Q ss_pred CCCCCCCCcc----------cCCCCChHHHHHHHHHHHhCCceEEEEecCCcccccccccCCCCCCCCccccCCcccccc
Q psy11074 497 NRNFPDQFEY----------EAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAPGHACGFDFKDGITN 566 (710)
Q Consensus 497 NRnf~~~~~~----------~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 566 (710)
|||||..|.. ++.+.|||||+++++++++.++++++|+|++.....+... . ......|.... .
T Consensus 60 NRnFp~~~~~~~~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~~idlHs~~~~~~~~~~--~----~~la~~~g~~~-~ 132 (178)
T cd06904 60 NRNFPTKDWPPGASRYRRYPGPKPGSEPESRALMDLIERFKPDVVVSFHAPLGVLDGDGP--N----EPLARKFGYLG-F 132 (178)
T ss_pred hhcCCccccccCCCcccccCCCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCeecCCCc--h----hHHHHHhCCCc-c
Confidence 9999999853 3456799999999999999999999999998643222211 0 11111221111 1
Q ss_pred cceEEeecCchhhhccccCCeEEEEEEecCCC
Q psy11074 567 GNYWYKVTGGMQDFNYVHSNCFEITMELSCCK 598 (710)
Q Consensus 567 ~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~ 598 (710)
....|...|++.||++...+++++|+|+|.+.
T Consensus 133 ~~~~~~~~G~~~~~a~~~~gip~it~Elg~~~ 164 (178)
T cd06904 133 DDLGYPTPGSLGSWAGVERNIPVITIELPYNL 164 (178)
T ss_pred ccCCccCCCcHHHHHhhcCCCeEEEEEcCCcc
Confidence 11235568999999998889999999999765
No 63
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.93 E-value=1.2e-25 Score=231.33 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=132.7
Q ss_pred cCC-HHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 46 YYN-STELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 46 y~~-~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
||+ ++||+++|++|+++||+ +++.+||+|+|||+|++++|+... +.. ..||.|++.||+|||||+|++++++|+
T Consensus 2 Yh~~~~ei~~~l~~l~~~~p~-~~~~~ig~S~egr~i~~i~~~~~~---~~~-~~k~~i~i~agiHarE~i~~~~~l~li 76 (272)
T cd06227 2 YHTATDEINEEADALVKNIRL-SRLGELIESVKVRNFSSITLNPNG---DPS-KKKVKALLLFGEHARELISPETGLHLL 76 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCC-cEEeeeeeccCCceeeEEEecCCC---CCC-CCCCEEEEECCccCCchhhHHHHHHHH
Confidence 899 99999999999999999 999999999999999999999761 111 469999999999999999999999999
Q ss_pred HHHHHhcCC----ChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcCC-ccccccccccceeEEEEeeccC-CC
Q psy11074 125 QYLVLKDGK----DDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQK-RMQDFNYVHSNCFEITMELSCC-KY 194 (710)
Q Consensus 125 ~~L~~~y~~----d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~p-g~~d~~y~~~~~~~~t~e~~~~-~~ 194 (710)
++|+.+|.. ++.+++||++++|+|||++||||+++++.+++ ||+-- -+|||.|.|..-.. ..|. .|
T Consensus 77 ~~L~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~~GVDLNRNf~~~w~~~~~----~~~~~~y 152 (272)
T cd06227 77 SNLCGELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYCLRENENGVDLNRNYGADWGFKED----DYEDEEY 152 (272)
T ss_pred HHHHHhcccccchhHHHHHHHhcCcEEEEeccCCchheeEeccCcccccCCccccccccCCcccccCCC----Ccccccc
Confidence 999999863 37899999999999999999999999765543 32100 13599998864221 1163 68
Q ss_pred CCCcchHHHHHHhhHHHHHHHHH
Q psy11074 195 PKASDLKHYWAANKESLIKLIEN 217 (710)
Q Consensus 195 p~~~~l~~~w~~n~~al~~~~~~ 217 (710)
++...++ |++.+++..++.+
T Consensus 153 ~G~~~~s---EpEt~av~~~~~~ 172 (272)
T cd06227 153 SGPAPFS---EPETRVLRDLLTS 172 (272)
T ss_pred CCCCCCC---cHHHHHHHHHHHh
Confidence 8888888 8899999888764
No 64
>smart00631 Zn_pept Zn_pept.
Probab=99.93 E-value=2.2e-25 Score=232.85 Aligned_cols=159 Identities=33% Similarity=0.594 Sum_probs=137.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||||+||.++|++|+++||+++++.+||+|++||+|++++|+++ + ...||.|+++|++||+||+|+++++++++
T Consensus 1 y~ty~e~~~~l~~l~~~~~~~v~~~~iG~S~~Gr~i~~~~i~~~---~---~~~k~~v~i~a~~Hg~E~~g~~~~~~~i~ 74 (277)
T smart00631 1 YHSYEEIEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISDG---G---SHNKPAIFIDAGIHAREWIGPATALYLIN 74 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeceecCCCCceEEEEEeCC---C---CCCCcEEEEECCccccccccHHHHHHHHH
Confidence 79999999999999999999999999999999999999999986 2 23599999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcC----Cc---cccccccccceeEEEEeecc-CC
Q psy11074 126 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ----KR---MQDFNYVHSNCFEITMELSC-CK 193 (710)
Q Consensus 126 ~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~----pg---~~d~~y~~~~~~~~t~e~~~-~~ 193 (710)
+|+.+|..|+.++.+|++++|+|||++||||+++++.+++ ||+. .| +|||.+.|.. ..-.| ..
T Consensus 75 ~L~~~~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wr~~r~~~~~~~GvDLNRnf~~~w~~-----~~~p~~~~ 149 (277)
T smart00631 75 QLLENYGRDPRITKLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSNCRGVDLNRNFPFHWGK-----TGNPCSET 149 (277)
T ss_pred HHHHhcccCHHHHHHHHcCcEEEEEeecCchhhheecccccccCCCCCCCCCcCcccCCCCCCCCCC-----CCCCCCCC
Confidence 9999998899999999999999999999999998876543 5531 13 4799999986 11223 35
Q ss_pred CCCCcchHHHHHHhhHHHHHHHHHH
Q psy11074 194 YPKASDLKHYWAANKESLIKLIENV 218 (710)
Q Consensus 194 ~p~~~~l~~~w~~n~~al~~~~~~~ 218 (710)
|++...++ +++.+++..++.+.
T Consensus 150 y~G~~~~s---epEt~ai~~~~~~~ 171 (277)
T smart00631 150 YAGPSPFS---EPETKAVRDFIRSN 171 (277)
T ss_pred cCCCCCCC---cHHHHHHHHHHHhc
Confidence 77777777 88899999888754
No 65
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.93 E-value=3.2e-25 Score=233.21 Aligned_cols=168 Identities=25% Similarity=0.406 Sum_probs=138.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
||||+||.++|++|+++||+++++.+||+|+|||+|++++|+++ + ...||.|+++|++||+||+|+++++++++
T Consensus 1 Y~ty~ei~~~l~~l~~~~p~~~~~~~iG~S~egr~i~~l~i~~~---~---~~~k~~v~i~~~~Hg~E~~g~~~~~~~~~ 74 (294)
T cd03860 1 YHTYDEIYAWLDELAQKYPDLVTVETIGRSYEGRPIKGVKISNG---G---RSNKPAIFIDAGIHAREWISPATALYIIN 74 (294)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEEeeeeCCCCCeEEEEEEecC---C---CCCCcEEEEECCcCcCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987 2 35689999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcC------Cc---cccccccccceeEEEEeecc-
Q psy11074 126 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ------KR---MQDFNYVHSNCFEITMELSC- 191 (710)
Q Consensus 126 ~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~------pg---~~d~~y~~~~~~~~t~e~~~- 191 (710)
+|+.++. +.+++||++++|+|||++||||+++++++++ ||+. -| +|||.+.|..+- ...-.|
T Consensus 75 ~L~~~~~--~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~wrknr~~~~~~~~~GvDLNRnf~~~w~~~~--~~~~p~~ 150 (294)
T cd03860 75 QLVESYD--PEVTDLLDNYDWYILPVANPDGYEYTHTTDRLWRKNRSPNSGGGCVGVDLNRNFDYHWGGGG--ASSDPCS 150 (294)
T ss_pred HHHHccC--HHHHHHHHcCeEEEEeeecCCchhhhccccchhcccCCCCCCCCceeeccCCCCCCCCccCC--CCCCCCC
Confidence 9999853 7899999999999999999999999876554 4432 12 489999997541 111123
Q ss_pred CCCCCCcchHHHHHHhhHHHHHHHHHHhcceeEEE
Q psy11074 192 CKYPKASDLKHYWAANKESLIKLIENVHRGVYGIV 226 (710)
Q Consensus 192 ~~~p~~~~l~~~w~~n~~al~~~~~~~~~gi~G~V 226 (710)
..|++...++ +++.+++..++.+....+...+
T Consensus 151 ~~y~G~~~~s---epEt~al~~~~~~~~~~~~~~l 182 (294)
T cd03860 151 ETYAGPSAFS---EPETRAVRDFLLSLRGRIKAYL 182 (294)
T ss_pred CCccCCCCCc---hHHHHHHHHHHHhccccEEEEE
Confidence 3688888888 8899999998876532344444
No 66
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.92 E-value=4.5e-25 Score=222.92 Aligned_cols=129 Identities=34% Similarity=0.486 Sum_probs=112.9
Q ss_pred cccccCCceEEEEEEeccCCCC--CCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEE
Q psy11074 386 IGKSVQGRNLWAVEITHDVDNP--DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIV 463 (710)
Q Consensus 386 iG~S~eGr~i~~l~is~~~~~~--~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~iv 463 (710)
||+|.|||+|++++|++..+.. .....+||.|++.||+||+|+.|+++++.|+++|+. .+...+.+|++..|+||
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~---~~~~~~~ll~~~~i~iv 77 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLAS---ASDEEAKMLENIVIVLI 77 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHh---CCHHHHHHHhCCEEEEE
Confidence 6999999999999999421100 112347999999999999999999999999999987 34456899999999999
Q ss_pred EeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCC
Q psy11074 464 PSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGG 537 (710)
Q Consensus 464 P~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~ 537 (710)
|++||||+++ .+|.|++|+||||||+. .++||++++++++++++|++++|+|++
T Consensus 78 P~~NPDG~~~------------~~R~n~~g~DLNRd~~~--------~~~pEt~~~~~~~~~~~p~~~iDlH~~ 131 (226)
T cd03857 78 PRANPDGAAL------------FTRENANGLDLNRDFLK--------LTQPETRAVREVFIEWKPQFFIDLHEY 131 (226)
T ss_pred eccCCChHHh------------ccccCCCcccCCCCCCC--------cCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 9999999985 37899999999999987 589999999999999999999999998
No 67
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.92 E-value=2.8e-24 Score=219.64 Aligned_cols=148 Identities=22% Similarity=0.180 Sum_probs=120.2
Q ss_pred EEEEcccccCCceEEEEEEeccCC---------------CCC---------CCCCCcceEEEeeccccCccchHHHHHHH
Q psy11074 382 RAETIGKSVQGRNLWAVEITHDVD---------------NPD---------GRTLMKPMFKYVANMHGDETVGYALMVFL 437 (710)
Q Consensus 382 ~~~~iG~S~eGr~i~~l~is~~~~---------------~~~---------~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l 437 (710)
++.++|+|.|||+|++++||+..+ ++. ....+||.|+|.|++||+|++|+++++.+
T Consensus 1 ~l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l 80 (273)
T cd06240 1 KLVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMEL 80 (273)
T ss_pred CeeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHH
Confidence 367999999999999999995332 010 12357999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCC--------CCCCCCCCCCCcccCCCCCCCCCcccCC
Q psy11074 438 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDS--------LDGYVGRKNAHGVDLNRNFPDQFEYEAK 509 (710)
Q Consensus 438 ~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~--------~~~~~~R~n~~GvDlNRnf~~~~~~~~~ 509 (710)
+++|+. +.++++++||+++.|+|+|++||||++....-.+.. ...+..|.+..|+||||+|-.
T Consensus 81 ~~~L~~--~~d~~~~~lLd~~~i~i~P~~NPDG~er~~~w~~~~~~~~~~~~~~~~~~~~~y~g~DlNRD~~~------- 151 (273)
T cd06240 81 AYRLAT--EEDPEIKRILDNVIVLIVPVANPDGRDRVVDWYMRTLGPPKRDRSPLPPLYGKYVGHDNNRDGYM------- 151 (273)
T ss_pred HHHHHh--cCCHHHHHHHhcCEEEEEeCcCCCHHHHhhhhhhhccCCcccCCCCcccccCccCCcCCCcccch-------
Confidence 999998 478999999999999999999999999742110000 011223667899999999955
Q ss_pred CCChHHHHHHHHHHHhCCceEEEEecCCcc
Q psy11074 510 KVYEPETQAIMNFIYSNPFVLSGNLHGGAV 539 (710)
Q Consensus 510 ~~sepEt~al~~~~~~~~~~~~~~lH~~~~ 539 (710)
.+.||++++.+++.++.|.+++|+|..+.
T Consensus 152 -~~~~et~~~~~~~~~w~P~v~~D~He~g~ 180 (273)
T cd06240 152 -NQQETTNNSRKLFLEWHPQIMYDLHQSGP 180 (273)
T ss_pred -hcCHHHHHHHHHHHhcCCcEEEEcccCCC
Confidence 67899999999999999999999998654
No 68
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.91 E-value=9.9e-24 Score=213.47 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=125.5
Q ss_pred HHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCC----CCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhc
Q psy11074 370 ILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNP----DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 445 (710)
Q Consensus 370 l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~----~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y 445 (710)
|+......+..++...+++|.+||++++|+|++..... ......||.|+|.|++|++|..|+.++..+++.|+.
T Consensus 4 l~~~~~~~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~-- 81 (278)
T cd06906 4 LESLHDPQQIYFRQQVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGETNASWVMKGTLEFLMS-- 81 (278)
T ss_pred HhhhcCCcccEEeeecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcchHHHHHHHHHHHHhC--
Confidence 33444444556889999999999999999999421110 011247999999999999999999999999999886
Q ss_pred CCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHH---HHHHHHH
Q psy11074 446 GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPE---TQAIMNF 522 (710)
Q Consensus 446 ~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepE---t~al~~~ 522 (710)
.|+.++.|+++++|+||||+||||+.+ ...|+|..|+||||||.. +.+...|| +++|.++
T Consensus 82 -~d~~a~~Lr~~~~f~IvPmlNPDGvv~-----------Gn~Rc~~~G~DLNR~w~~-----p~~~~~P~i~~~k~l~~~ 144 (278)
T cd06906 82 -SSPTAQSLRESYIFKIVPMLNPDGVIN-----------GNHRCSLSGEDLNRQWQS-----PNPELHPTIYHTKGLLQY 144 (278)
T ss_pred -CCHHHHHHHHhCcEEEEeeecCcccee-----------cccccCCCCCCCCCCCCC-----CCcccChHHHHHHHHHHH
Confidence 689999999999999999999999984 357999999999999975 45556686 5555566
Q ss_pred HHhC--CceEEEEecCCcc---cccccccC
Q psy11074 523 IYSN--PFVLSGNLHGGAV---ARDYASRN 547 (710)
Q Consensus 523 ~~~~--~~~~~~~lH~~~~---~~~y~~~~ 547 (710)
+.+. ++.+++|+||++. ...|+...
T Consensus 145 l~~~~~~~~~yiDlHghs~~~~~F~yG~~~ 174 (278)
T cd06906 145 LAAIKRSPLVYCDYHGHSRKKNVFMYGCSI 174 (278)
T ss_pred HHHhCCCceEEEeecccccccceEEeccCC
Confidence 6653 5789999999887 55665543
No 69
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.90 E-value=1.3e-23 Score=220.47 Aligned_cols=157 Identities=29% Similarity=0.570 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhc
Q psy11074 52 LDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 131 (710)
Q Consensus 52 i~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y 131 (710)
|.++|++|+++||+++++.+||+|.+||+|++++|+.. .......||.|+++|++||+||+|++++++|+++|+.+|
T Consensus 1 i~~~l~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~~~---~~~~~~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~ 77 (279)
T PF00246_consen 1 INAYLDALAARYPDIVRLESIGKSYEGRPIYALTIGSN---SNGSDPGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGY 77 (279)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEESSS---TTTTSTTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcEEEEEeeECCCCCeEEEEEeecc---cccccccccceEEEecccccccCchHHHHHHHHHhhccc
Confidence 68999999999999999999999999999999999986 334567799999999999999999999999999999988
Q ss_pred CCChHHHHhhcceEEEEEeccCchhhhhhhcCCC----CCcCC-c---cccccccccceeEEEEeeccC-CCCCCcchHH
Q psy11074 132 GKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL----NTKQK-R---MQDFNYVHSNCFEITMELSCC-KYPKASDLKH 202 (710)
Q Consensus 132 ~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~p-g---~~d~~y~~~~~~~~t~e~~~~-~~p~~~~l~~ 202 (710)
.|+.++.||++++|+|||++||||+++.+..++ ||... | +|||.+.|..+ . +-...|. .|++....+
T Consensus 78 -~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~GvDlNRnf~~~w~~~-~-~~~~~~~~~y~g~~~~s- 153 (279)
T PF00246_consen 78 -DDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANGVDLNRNFPYQWNEE-G-SSSNPCSETYRGPAPFS- 153 (279)
T ss_dssp -TSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS--GGGSSSSSTTSS-S-SBSSTTSTTB--SSTTT-
T ss_pred -cchhhhhhcccceEEEEeeecccceeeeeecccccccccccccccccccccCcccccc-c-ccCCCCCcccCCCcchh-
Confidence 899999999999999999999999999996443 34221 2 36999999766 2 3334453 577777777
Q ss_pred HHHHhhHHHHHHHHH
Q psy11074 203 YWAANKESLIKLIEN 217 (710)
Q Consensus 203 ~w~~n~~al~~~~~~ 217 (710)
+++.+++..++++
T Consensus 154 --epEt~al~~~~~~ 166 (279)
T PF00246_consen 154 --EPETRALRNLIQD 166 (279)
T ss_dssp --SHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHhh
Confidence 8889999988776
No 70
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.90 E-value=2.3e-23 Score=216.54 Aligned_cols=151 Identities=24% Similarity=0.350 Sum_probs=123.8
Q ss_pred CCCcEEEEeeeeec------CCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChH
Q psy11074 63 YPHLVRAETIGKSV------QGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR 136 (710)
Q Consensus 63 ~p~~~~~~~iG~S~------eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~ 136 (710)
||+++++++||+|+ |||+|++|+|+++... .....||.|++.|++|||||+|++++++++++|+.+|..|+.
T Consensus 1 ~p~~~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~--~~~~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~ 78 (293)
T cd06226 1 YPNLAQWVDIGDSWDKPGGPAGYDIRALKLTNKATN--SPTGPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDAD 78 (293)
T ss_pred CCcceEEEEeeEecccCcccCCceEEEEEEecCCCC--cCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHH
Confidence 79999999999999 9999999999986211 134579999999999999999999999999999999999999
Q ss_pred HHHhhcceEEEEEeccCchhhhhhhcCCC---CCcC----------Cc---cccccccccceeEEEEeecc-CCCCCCcc
Q psy11074 137 ITQLLNSTDIYIVPSINPDGFAAAKEGNL---NTKQ----------KR---MQDFNYVHSNCFEITMELSC-CKYPKASD 199 (710)
Q Consensus 137 ~~~ll~~~~i~ivP~~NPDG~~~~~~~~~---NR~~----------pg---~~d~~y~~~~~~~~t~e~~~-~~~p~~~~ 199 (710)
+++||++++|+|||++||||+++++++.. ||+. .| +|||.|.|..+..-. .-.| ..|+++..
T Consensus 79 v~~lL~~~~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~-~~p~~~~y~G~~p 157 (293)
T cd06226 79 ATWLLDYHEIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASS-GDPCSETYRGPAP 157 (293)
T ss_pred HHHHHhcCeEEEEecccCCcceeeccCcceeccCCCCCCCCccccccccccccCCCCcCCcCCCCC-CCCCCCCcCCCCC
Confidence 99999999999999999999998764321 4421 13 489999998643210 1234 36888888
Q ss_pred hHHHHHHhhHHHHHHHHHHh
Q psy11074 200 LKHYWAANKESLIKLIENVH 219 (710)
Q Consensus 200 l~~~w~~n~~al~~~~~~~~ 219 (710)
++ |++.+++..++....
T Consensus 158 ~S---EpEt~Av~~~~~~~~ 174 (293)
T cd06226 158 GS---EPETAALEDYIRGLF 174 (293)
T ss_pred CC---cHHHHHHHHHHHhcc
Confidence 88 899999999887643
No 71
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.88 E-value=1.2e-21 Score=197.55 Aligned_cols=124 Identities=27% Similarity=0.411 Sum_probs=108.7
Q ss_pred EEEEEcccccC-CceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhccc
Q psy11074 381 VRAETIGKSVQ-GRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTD 459 (710)
Q Consensus 381 ~~~~~iG~S~e-Gr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~ 459 (710)
.++..+|+..+ |++|+++++. + . .++||.++|+||+||+|+.|+++++.|++.++. .++++++
T Consensus 15 ~~~~~~g~~~~~~~pL~~l~~~---~-~---~~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~~---------~~l~~~~ 78 (236)
T cd06231 15 LDVREYGQLAYQSYPLYALKSR---G-W---DSDLPRVLITAGIHGDEPAGPLGALEFLRAAAL---------ELAQDVN 78 (236)
T ss_pred eEEEEccccccCCeeEEEEEcC---C-C---CCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHH---------HHhcCCe
Confidence 67888898776 9999999987 2 1 146899999999999999999999999999875 3688899
Q ss_pred EEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC--CceEEEEecCC
Q psy11074 460 IYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN--PFVLSGNLHGG 537 (710)
Q Consensus 460 i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~--~~~~~~~lH~~ 537 (710)
|+|+|++||||++. .+|.|+.|+||||||+. ..++||++++++++.+. ++++++|||++
T Consensus 79 i~ivP~vNPdG~~~------------~~R~n~~g~DLNR~F~~-------~~~~~E~~al~~~~~~~~~~~~~~IDLH~~ 139 (236)
T cd06231 79 LSVYPCINPSGFEA------------ITRWNRNGIDPNRSFRS-------ESPSPEVRLLMEWLRRLGAAFDLHIDLHED 139 (236)
T ss_pred EEEEECcChhHHhc------------CccCCCCCccccCCCCC-------CCCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 99999999999974 36889999999999986 25689999999999988 89999999998
Q ss_pred cc
Q psy11074 538 AV 539 (710)
Q Consensus 538 ~~ 539 (710)
+.
T Consensus 140 ~~ 141 (236)
T cd06231 140 TE 141 (236)
T ss_pred CC
Confidence 73
No 72
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.87 E-value=5e-22 Score=204.66 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=103.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCC-CCCCCcCeEEEeccccCCCcchHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPD-GRTLMKPMFKYVANMHGDETVGYALMVFLI 124 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~-~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~ 124 (710)
+.+|+||.+||++|++++|.+.++.+||+|+|||+|++++|+.+ .. .....||.|++.|++||+||+|++++++++
T Consensus 2 ~t~y~e~~~~l~~La~~~~~i~~~~~iG~S~eGR~i~~l~is~~---~~~~~~~~kp~V~i~~giHg~E~~g~~a~l~ll 78 (268)
T cd06242 2 PTSHEEMESFMKSLASKNDWMSYHSDIGKSEEGRSIPYVYLSTS---KSSSSSSKKLRVWLQGGVHGNEPAGDEAALALL 78 (268)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEECccccCCceeEEEEEecC---CccccCCCCCEEEEECCcCCCCHHHHHHHHHHH
Confidence 57899999999999999999777999999999999999999976 21 224569999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC-----CC
Q psy11074 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL-----NT 167 (710)
Q Consensus 125 ~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~-----NR 167 (710)
++|+.+ +...++|++++|+|+|++||||+++.+|.++ ||
T Consensus 79 ~~L~~~----~~~~~lL~~~~i~ivP~~NPDG~~~~~R~na~g~DlNR 122 (268)
T cd06242 79 GKLDNN----PKWASVLEKIDIIVLPRYNPDGSAYFQRTLATGYDPNR 122 (268)
T ss_pred HHHHhC----chHHHHHhcCeEEEEeccCcchhhhccccCCcCcccCC
Confidence 999975 2345899999999999999999999998877 88
No 73
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.85 E-value=3.1e-21 Score=201.86 Aligned_cols=136 Identities=13% Similarity=0.251 Sum_probs=112.1
Q ss_pred eeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcC------------CChHHHH
Q psy11074 72 IGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDG------------KDDRITQ 139 (710)
Q Consensus 72 iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~------------~d~~~~~ 139 (710)
-++|+|||+|++|+|+.+ . ...||.|++.|++|||||++++++++++++|+.+|. .|+.+++
T Consensus 6 ~~~S~EgR~I~~l~I~~~---~---~~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~ 79 (332)
T cd06228 6 PHKTYEGRTPHGAKIGAG---T---LTSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKA 79 (332)
T ss_pred CCCCCCCCeeEEEEEeCC---C---CCCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHH
Confidence 489999999999999986 1 246999999999999999999999999999999874 4789999
Q ss_pred hhcceEEEEEeccCchhhhhhhcCCC----CCcC------C---c---cccccccccceeEE-------EEeec-c-CCC
Q psy11074 140 LLNSTDIYIVPSINPDGFAAAKEGNL----NTKQ------K---R---MQDFNYVHSNCFEI-------TMELS-C-CKY 194 (710)
Q Consensus 140 ll~~~~i~ivP~~NPDG~~~~~~~~~----NR~~------p---g---~~d~~y~~~~~~~~-------t~e~~-~-~~~ 194 (710)
||+ ++|+|||++|||||+++++.++ ||+. + | +|||+|.|..+... ...-. | ..|
T Consensus 80 lL~-~~i~IvP~vNPDGy~~s~~~~r~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y 158 (332)
T cd06228 80 ILD-AGIVVFPLVNPDGRAHDQTANSCWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETF 158 (332)
T ss_pred HHh-CeEEEEEeecCcchhheeccchhhhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCcccc
Confidence 999 9999999999999999987765 6642 1 3 49999999855321 11122 4 369
Q ss_pred CCCcchHHHHHHhhHHHHHHHHH
Q psy11074 195 PKASDLKHYWAANKESLIKLIEN 217 (710)
Q Consensus 195 p~~~~l~~~w~~n~~al~~~~~~ 217 (710)
++...++ |++.+++..++..
T Consensus 159 ~G~~pfS---EPET~av~~~~~~ 178 (332)
T cd06228 159 HGTAAFS---EPETRNVVWVMDT 178 (332)
T ss_pred CCCCCCc---cHHHHHHHHHHhc
Confidence 9999999 8999999877764
No 74
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.84 E-value=6.9e-21 Score=185.72 Aligned_cols=140 Identities=23% Similarity=0.248 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHHHCCCcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHH
Q psy11074 362 NSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYL 441 (710)
Q Consensus 362 ty~e~~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l 441 (710)
++.++...|..| |.+ . --.+|+|||+|++++|+ .+||.|+|.||+||+||+|+..+++|++.|
T Consensus 3 ~~~~i~~~l~~~----~g~-~--~~a~S~EGR~I~~l~i~----------~~Kp~I~I~gGvHarEwig~~~al~fi~~L 65 (240)
T cd06232 3 SAGQIAYELAVL----PGI-E--FAARSRQGRPVTGRYVA----------GLDHPVVISAGQHANETSGVVGALRAAEAL 65 (240)
T ss_pred CHHHHHHHHhhc----CCc-c--ccccccCCCeeeEEEec----------CCCcEEEEeCCcCCCcchhHHHHHHHHHHH
Confidence 466666666655 432 1 25689999999999996 359999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCC--CCCCCCcccCC-CCCCCCCcccCCCCChHHHHH
Q psy11074 442 VLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYV--GRKNAHGVDLN-RNFPDQFEYEAKKVYEPETQA 518 (710)
Q Consensus 442 ~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~--~R~n~~GvDlN-Rnf~~~~~~~~~~~sepEt~a 518 (710)
+. +++++|+|+|++|||||++.++--+.+..|.. .|.|+.|.|+| |.++. ..|+++
T Consensus 66 ~~-----------~~~~n~~I~P~vNPDGYe~~~~L~r~nP~~~hHaaR~~A~g~D~~fr~~~~----------~~Es~~ 124 (240)
T cd06232 66 AA-----------RPGAHFALIPLENPDGYALHERLRAEHPRHMHHAARYTALGDDLEYREFPP----------FGEREA 124 (240)
T ss_pred hc-----------cCCceEEEEEeeCCcHHHhhchhhccCcccccchhhhcccCCCcccccCCc----------chHHHH
Confidence 86 57899999999999999986432232222322 28999999999 98744 499999
Q ss_pred HHHHHHhCCceEEEEecCCcc
Q psy11074 519 IMNFIYSNPFVLSGNLHGGAV 539 (710)
Q Consensus 519 l~~~~~~~~~~~~~~lH~~~~ 539 (710)
+++++.++.+.+.||+|++..
T Consensus 125 ~~~~~~~~~~~~hiDlHeyp~ 145 (240)
T cd06232 125 RHQALAKSGAQLHVNLHGYPA 145 (240)
T ss_pred HHHHHHhhCCcEEEECCCCCc
Confidence 999999999999999999743
No 75
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.84 E-value=3.3e-20 Score=189.51 Aligned_cols=112 Identities=29% Similarity=0.333 Sum_probs=100.4
Q ss_pred CCccCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHH
Q psy11074 43 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVF 122 (710)
Q Consensus 43 ~~~y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~ 122 (710)
|-.-|+|+++.++|+++++ .+ .+++.+||+|+|||+|++|+|+++ ..+||.|||.|++||+|++|..++..
T Consensus 7 y~~Pys~~~~~~~l~~~~~-~~-~v~~~~iG~S~eGR~i~~l~I~~~-------~~~k~~V~i~a~iH~~E~~g~~~~~~ 77 (263)
T cd06234 7 YFAPYSYERHLALIARAQG-AP-DVRLEVLGQTVQGRDIDLLTFGEP-------GPGKKKLWIIARQHPGETMAEWFMEG 77 (263)
T ss_pred EeCCCCHHHHHHHHHHHhc-CC-CeEEEEEEEcCCCCeEEEEEEccC-------CCCCCEEEEECCCCCCcHHHHHHHHH
Confidence 4455799999999999976 33 799999999999999999999875 24699999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh-hcCCC
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA-KEGNL 165 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~~~~~ 165 (710)
|++.|+.. .|+.+++||++++|+|||++||||+++. .|.+|
T Consensus 78 ll~~L~~~--~d~~~~~ll~~~~~~IvP~~NPDG~~~g~~R~n~ 119 (263)
T cd06234 78 LLERLLDP--DDAVARALLEKAVFYVVPNMNPDGSARGHLRTNA 119 (263)
T ss_pred HHHHHhhc--CCHHHHHHHhcCEEEEEeeecchhhhhcCCccCC
Confidence 99999986 6889999999999999999999999997 36666
No 76
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.83 E-value=1.7e-20 Score=190.48 Aligned_cols=107 Identities=23% Similarity=0.339 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
-++++|+.+||++|++. +++++.+||+|+|||||++++|+++ ..||.|++.|++||+||+|+.++++|++
T Consensus 7 ~~~~~~i~~~l~~L~~~--~~v~~~~iG~S~eGR~i~~l~ig~~--------~~k~~v~i~~~iH~~E~~g~~~~~~~~~ 76 (244)
T cd06237 7 LIDNQDVKDWVDSLIKQ--PFVELELLGLSTQGRPLKALERGNP--------DSKEWIVVISRQHPPEVTGALAMKAFIE 76 (244)
T ss_pred eCCHHHHHHHHHHHhcC--CCeEEEEeeEcCCCCEEEEEEecCC--------CCCceEEEEcCcCCCcHHHHHHHHHHHH
Confidence 36899999999999755 5799999999999999999999865 3589999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh-hcCCC
Q psy11074 126 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA-KEGNL 165 (710)
Q Consensus 126 ~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~~~~~ 165 (710)
+|+.+ ++.++++|++++|+|+|++||||+++. +|.|+
T Consensus 77 ~l~~~---~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N~ 114 (244)
T cd06237 77 TLLSD---SELAKKFRAKYNVLLVPNMNPDGVDLGHWRHNA 114 (244)
T ss_pred HHHhC---CHHHHHHHHhCEEEEEEeeCcchhhcCCccCCC
Confidence 99863 456799999999999999999999986 46665
No 77
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.82 E-value=3.8e-20 Score=188.65 Aligned_cols=107 Identities=26% Similarity=0.246 Sum_probs=95.1
Q ss_pred HHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCCh
Q psy11074 56 ILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDD 135 (710)
Q Consensus 56 l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~ 135 (710)
|++|+++||+++++.+||+|+|||+|++|+|+++.. .....+||.||+.|++||+||+|+.+++++++.|+.+ |+
T Consensus 1 l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~It~~~~--~~~~~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~~---~~ 75 (261)
T cd06908 1 LDALEKRSLDYFRREQLGQSVQKRRLDLLTIDSPDN--LREDSEKKVIFITARVHPGESPSSYVCQGLIDFLVSN---HP 75 (261)
T ss_pred ChHHHhhCCCcEEEEEeEEcCCCCeeEEEEEcCCCc--cccCCCCcEEEEECCcCCCChHHHHHHHHHHHHHhhC---CH
Confidence 468899999999999999999999999999998611 1223569999999999999999999999999999974 89
Q ss_pred HHHHhhcceEEEEEeccCchhhhhhh-cCCC-----CC
Q psy11074 136 RITQLLNSTDIYIVPSINPDGFAAAK-EGNL-----NT 167 (710)
Q Consensus 136 ~~~~ll~~~~i~ivP~~NPDG~~~~~-~~~~-----NR 167 (710)
.++.|+++++|+|||++||||+++.. |.+| ||
T Consensus 76 ~~~~L~~~~~~~IvP~~NPDGv~~gn~R~~~~G~DLNR 113 (261)
T cd06908 76 IAKVLREHLVFKIVPMLNPDGVFLGNYRCSLMGHDLNR 113 (261)
T ss_pred HHHHHHHhCcEEEEeeecCcceeecCCcCcCcCcCCCC
Confidence 99999999999999999999999984 5555 88
No 78
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.80 E-value=9.9e-20 Score=187.57 Aligned_cols=129 Identities=20% Similarity=0.308 Sum_probs=103.4
Q ss_pred ecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCC-----ChHHHHhhcceEEEEE
Q psy11074 75 SVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGK-----DDRITQLLNSTDIYIV 149 (710)
Q Consensus 75 S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~-----d~~~~~ll~~~~i~iv 149 (710)
|+|||+|++++|+++ +|.|+++|++|||||+|++++++++++|+.+|.. +..+++||++++|+||
T Consensus 1 S~eGR~I~~~~ig~~----------~~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~iv 70 (255)
T cd06229 1 SVLGRDIYEVKLGNG----------PKTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFV 70 (255)
T ss_pred CCCCceeeEEEEcCC----------CceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEE
Confidence 789999999999976 4899999999999999999999999999999864 4567999999999999
Q ss_pred eccCchhhhhhhcCCC--------------CCcC--------Cc---cccccccccceeEEEEeecc-CCCCCCcchHHH
Q psy11074 150 PSINPDGFAAAKEGNL--------------NTKQ--------KR---MQDFNYVHSNCFEITMELSC-CKYPKASDLKHY 203 (710)
Q Consensus 150 P~~NPDG~~~~~~~~~--------------NR~~--------pg---~~d~~y~~~~~~~~t~e~~~-~~~p~~~~l~~~ 203 (710)
|++||||+++++++.+ ||+. .| +|||++.|..+-. .....| ..|+++..++
T Consensus 71 P~~NPDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~-~s~~p~~~~y~G~~p~S-- 147 (255)
T cd06229 71 PMVNPDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKA-GPKAPAPRNYKGEQPLS-- 147 (255)
T ss_pred eCccCCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCC-CCCCCCccCcCCCCCCC--
Confidence 9999999999876421 1110 12 3699999975432 111224 3688888888
Q ss_pred HHHhhHHHHHHHHH
Q psy11074 204 WAANKESLIKLIEN 217 (710)
Q Consensus 204 w~~n~~al~~~~~~ 217 (710)
|++.+++..++..
T Consensus 148 -EpEtral~~~~~~ 160 (255)
T cd06229 148 -EPETIALAELTRE 160 (255)
T ss_pred -chhHHHHHHHHHh
Confidence 8999999998875
No 79
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.78 E-value=6.9e-19 Score=176.44 Aligned_cols=95 Identities=29% Similarity=0.504 Sum_probs=87.7
Q ss_pred HHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHH
Q psy11074 59 TVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRIT 138 (710)
Q Consensus 59 l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~ 138 (710)
+.+++|+++++..||+|++||||++++|+++ +|+|++.|++||+|+.|++++++|+++|+.+ .+..++
T Consensus 2 ~~~~~p~~v~~~~iG~S~eGrpI~~l~ig~g----------~~~vli~agiHG~E~~g~~all~ll~~L~~~--~~~~~~ 69 (231)
T cd06239 2 LLEKLPAKFKVEVIGKSVEGRPIYSVKFGSG----------KIKILLWSQMHGNESTTTKALLDLLNFLGTS--KDQEAK 69 (231)
T ss_pred hHHHCCCeeEEEEeeECCCCCeEEEEEEcCC----------CcEEEEEeccCCCCHHHHHHHHHHHHHHHHC--CCHHHH
Confidence 4578999999999999999999999999975 8999999999999999999999999999986 556668
Q ss_pred HhhcceEEEEEeccCchhhhhhhcCCC
Q psy11074 139 QLLNSTDIYIVPSINPDGFAAAKEGNL 165 (710)
Q Consensus 139 ~ll~~~~i~ivP~~NPDG~~~~~~~~~ 165 (710)
++|++.+|+|||++||||+++.+|.+.
T Consensus 70 ~ll~~~~v~iiP~lNPDG~~~~~R~N~ 96 (231)
T cd06239 70 KILDEVTLVIIPMLNPDGAEAYTRVNA 96 (231)
T ss_pred HHHhCCEEEEEeccCccHHHHcccCCC
Confidence 999999999999999999999887665
No 80
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.76 E-value=2.7e-18 Score=176.77 Aligned_cols=104 Identities=25% Similarity=0.377 Sum_probs=88.1
Q ss_pred HHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCC--CCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhc
Q psy11074 54 AFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP--DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 131 (710)
Q Consensus 54 ~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~--~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y 131 (710)
+|+++|++++| .+++.+||+|.|||+|++++|+.+.... .....+||.|++.|++||+|+.|.+++++|+++|+.+.
T Consensus 1 a~~~~La~~~~-~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~ 79 (266)
T cd06241 1 AFLERLAAASP-LIRLESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGK 79 (266)
T ss_pred CHHHHHHHhCC-ceEEEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcc
Confidence 47899999997 5999999999999999999999752110 11235799999999999999999999999999999862
Q ss_pred CCChHHHHhhcceEEEEEeccCchhhhhhhcC
Q psy11074 132 GKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163 (710)
Q Consensus 132 ~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~ 163 (710)
. .++|++++|+|||++||||+++....
T Consensus 80 --~---~~ll~~~~i~ivP~~NpDG~~~~~~~ 106 (266)
T cd06241 80 --K---DALLDKVVLVFIPVFNVDGHERRSPY 106 (266)
T ss_pred --h---HHHHhCCEEEEEeCCCccHHHhcccc
Confidence 2 28999999999999999999987443
No 81
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.76 E-value=2.5e-18 Score=177.35 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=97.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHH
Q psy11074 46 YYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQ 125 (710)
Q Consensus 46 y~~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~ 125 (710)
-.+|.+...+++.++ |..+++.+||+|.+||+|++++++.. .+||.|++.|++||+||+|+.+++++++
T Consensus 10 ~~~y~~~~~l~~sl~---~~~v~l~~IG~s~egr~i~~~~~~~~--------~~k~~i~i~a~iH~~E~~~~~~~~~li~ 78 (269)
T cd03856 10 NQIYDRRLALCESLQ---GNSCDLLTITSPPEGNDIKYEHLCSF--------ANKKYIFLIARVHPGETNASWVMKGFLE 78 (269)
T ss_pred CcCHHHHHHHHHHhc---CCceeEEEeccCCCCccccceeccCC--------CCCcEEEEEcCcCCCchHHHHHHHHHHH
Confidence 368899999998886 77899999999999999999998754 4699999999999999999999999999
Q ss_pred HHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh-hcCCC-----CC
Q psy11074 126 YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA-KEGNL-----NT 167 (710)
Q Consensus 126 ~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~-~~~~~-----NR 167 (710)
+|+.+ ++.++.||++++|+|||++||||+++. +|.+| ||
T Consensus 79 ~Ll~~---~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~G~DLNR 123 (269)
T cd03856 79 FLLSD---NPTAQSLRESFVFKIVPMLNPDGVIRGNYRCSLSGVDLNR 123 (269)
T ss_pred HHHhC---CHHHHHHHhcCeEEEEeeeCCccccccCCcCCCCCCCcCC
Confidence 99975 566899999999999999999999986 57666 87
No 82
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.74 E-value=7.1e-18 Score=169.89 Aligned_cols=94 Identities=29% Similarity=0.478 Sum_probs=82.3
Q ss_pred eeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEec
Q psy11074 72 IGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPS 151 (710)
Q Consensus 72 iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~ 151 (710)
||+|+|||||++++|++...........+|.|++.|++||+||+|+++++.++++|+.. .++.++++|++++|+|+|+
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~~--~~~~~~~lL~~~~i~ivP~ 78 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEPAGREALLIIARDLAFG--EDEELVPLLHQTTVLFVPT 78 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHhc--CCHHHHHHHhcceEEEEeC
Confidence 79999999999999998621111223578999999999999999999999999999865 7888999999999999999
Q ss_pred cCchhhhhhhcCCC-----CC
Q psy11074 152 INPDGFAAAKEGNL-----NT 167 (710)
Q Consensus 152 ~NPDG~~~~~~~~~-----NR 167 (710)
+||||+++..|.++ ||
T Consensus 79 ~NPDG~~~~~R~n~~g~DlNR 99 (236)
T cd06243 79 ANPDGREADTRSNADGIDINR 99 (236)
T ss_pred cCccHhhcCCcCCCCCcccCC
Confidence 99999999888776 88
No 83
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.73 E-value=6.6e-18 Score=172.94 Aligned_cols=92 Identities=27% Similarity=0.359 Sum_probs=80.0
Q ss_pred EEEeeeeecCCceEEEEEEecCCCC---------------C---------CCCCCCcCeEEEeccccCCCcchHHHHHHH
Q psy11074 68 RAETIGKSVQGRNLWAVEITHDVDS---------------P---------DGRTLMKPMFKYVANMHGDETVGYALMVFL 123 (710)
Q Consensus 68 ~~~~iG~S~eGr~i~~l~i~~~~~~---------------~---------~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l 123 (710)
++.+||+|+|||+|+++.||+.... + ......||.|++.|+|||+||+|+++++++
T Consensus 1 ~l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l 80 (273)
T cd06240 1 KLVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMEL 80 (273)
T ss_pred CeeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHH
Confidence 4789999999999999999974110 0 012346999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhh
Q psy11074 124 IQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 161 (710)
Q Consensus 124 ~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~ 161 (710)
+++|+.+ .|+.+++||++++|+|+|++||||+++..
T Consensus 81 ~~~L~~~--~d~~~~~lLd~~~i~i~P~~NPDG~er~~ 116 (273)
T cd06240 81 AYRLATE--EDPEIKRILDNVIVLIVPVANPDGRDRVV 116 (273)
T ss_pred HHHHHhc--CCHHHHHHHhcCEEEEEeCcCCCHHHHhh
Confidence 9999986 79999999999999999999999999854
No 84
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.71 E-value=2.3e-17 Score=169.55 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=86.7
Q ss_pred CCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhc
Q psy11074 63 YPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLN 142 (710)
Q Consensus 63 ~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~ 142 (710)
.+.++++..||+|.+||+|++++|++.... ......||.|++.|++||+||+|+.+++++++.|+.. ++.++.|++
T Consensus 9 ~~~~~~~~~iG~S~eGr~i~~l~i~~~~~~-~~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~---~~~~~~Ll~ 84 (258)
T cd06235 9 NNQYLKRKILCTTLGGLPVPLLTITSPSSK-SIPIKKKKVIVITARQHPGETNSSFVMQGFIDFLLSD---SPEAQYLRE 84 (258)
T ss_pred CCCceEEEEeEEcCCCCeeeEEEEeCCccc-ccccCCCcEEEEECCcCCCChHHHHHHHHHHHHHhcC---CHHHHHHHh
Confidence 567899999999999999999999975110 1123569999999999999999999999999999874 577999999
Q ss_pred ceEEEEEeccCchhhhhh-hcCCC-----CC
Q psy11074 143 STDIYIVPSINPDGFAAA-KEGNL-----NT 167 (710)
Q Consensus 143 ~~~i~ivP~~NPDG~~~~-~~~~~-----NR 167 (710)
+++|+|||++||||+.+. .|.++ ||
T Consensus 85 ~~~~~iiPm~NPDG~~~g~~R~n~~GvDLNR 115 (258)
T cd06235 85 NFIFKIIPMLNPDGVIHGNYRCSLSGIDLNR 115 (258)
T ss_pred ccEEEEEccccccceeecCCcCCCCCCCcCC
Confidence 999999999999999873 55555 87
No 85
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.69 E-value=4.7e-17 Score=164.80 Aligned_cols=96 Identities=27% Similarity=0.262 Sum_probs=82.2
Q ss_pred eeeecCCceEEEEEEecCCC---------------CCC----C----CCCCcCeEEEeccccCCCcchHHHHHHHHHHHH
Q psy11074 72 IGKSVQGRNLWAVEITHDVD---------------SPD----G----RTLMKPMFKYVANMHGDETVGYALMVFLIQYLV 128 (710)
Q Consensus 72 iG~S~eGr~i~~l~i~~~~~---------------~~~----~----~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~ 128 (710)
||+|+|||+|+++.|++..+ .+. . ....++.|+++++|||+|++|+++++.++++|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999998720 110 0 123477888899999999999999999999999
Q ss_pred HhcCC--------------ChHHHHhhcceEEEEEeccCchhhhhhhcCCC-----CC
Q psy11074 129 LKDGK--------------DDRITQLLNSTDIYIVPSINPDGFAAAKEGNL-----NT 167 (710)
Q Consensus 129 ~~y~~--------------d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~-----NR 167 (710)
.++.. ++.+++||+++.|+|+|++||||+++..|.++ ||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~~R~Na~G~DLNR 138 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAGTRENANGFDLNR 138 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceeeeecCCCccccCC
Confidence 88632 88999999999999999999999999988887 88
No 86
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.68 E-value=1.5e-16 Score=164.58 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=86.0
Q ss_pred cEEEEeeeeecCCceEEEEEEecCCCCCC------------------CCCCCcCeEEEeccccCCCcchHHHHHHHHHHH
Q psy11074 66 LVRAETIGKSVQGRNLWAVEITHDVDSPD------------------GRTLMKPMFKYVANMHGDETVGYALMVFLIQYL 127 (710)
Q Consensus 66 ~~~~~~iG~S~eGr~i~~l~i~~~~~~~~------------------~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L 127 (710)
.++...+|+|.|||+|++|+|++...... ....+||.||+.|++||+||+|+.++++++++|
T Consensus 15 y~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~ll~~L 94 (304)
T cd06236 15 YYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGFLKFL 94 (304)
T ss_pred EEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHHHHHH
Confidence 58899999999999999999998621110 112479999999999999999999999999999
Q ss_pred HHhcCCChHHHHhhcceEEEEEeccCchhhhhhh-cCCC-----CC
Q psy11074 128 VLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK-EGNL-----NT 167 (710)
Q Consensus 128 ~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~-~~~~-----NR 167 (710)
+.+ .|+.++.|+++++|+||||+||||+++.+ |.+| ||
T Consensus 95 l~~--~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR 138 (304)
T cd06236 95 LNK--DDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNR 138 (304)
T ss_pred HhC--CCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCc
Confidence 986 58899999999999999999999999865 5555 88
No 87
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.66 E-value=3.1e-16 Score=158.74 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=86.0
Q ss_pred CCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhc
Q psy11074 63 YPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLN 142 (710)
Q Consensus 63 ~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~ 142 (710)
.++++++.++|+|+|||+|++|+|++.... ......||.|++.|++|++|+.|..++..+++.|+. .|+..+.|++
T Consensus 10 ~~~~~~~~~lg~S~eGR~i~~LtIt~~~~~-~~~~~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~---~~~~a~~Lr~ 85 (261)
T cd06907 10 RSKFCKLRVLCRTLAGNTVYLLTITSPSSN-PSLAAAKKAVVLTARVHPGETNASWMMKGFLDFLTS---NSPDAQLLRD 85 (261)
T ss_pred cCCceEEEEEEECCCCCeeeEEEEcCCCcc-ccccCCCCEEEEECCcCCChHHHHHHHHHHHHHHhc---CCHHHHHHHh
Confidence 456899999999999999999999985211 122356999999999999999999999999999986 4889999999
Q ss_pred ceEEEEEeccCchhhhhhh-cCCC-----CC
Q psy11074 143 STDIYIVPSINPDGFAAAK-EGNL-----NT 167 (710)
Q Consensus 143 ~~~i~ivP~~NPDG~~~~~-~~~~-----NR 167 (710)
+++|+||||+||||+.+.. |.++ ||
T Consensus 86 ~~~f~IvPmlNPDGv~~G~~R~~~~G~DLNR 116 (261)
T cd06907 86 TFIFKIVPMLNPDGVIVGNYRCSLAGRDLNR 116 (261)
T ss_pred cCCEEEEEeecCccccccCCcCCCcCCCCCc
Confidence 9999999999999999874 4444 88
No 88
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.65 E-value=8.1e-16 Score=158.40 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=99.7
Q ss_pred CCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchh
Q psy11074 77 QGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDG 156 (710)
Q Consensus 77 eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG 156 (710)
.+.||++++|++. ...+|.|+++||+||+||+|++++++++++|+.+|..|+.++++|++++|+|||++||||
T Consensus 8 ~~~pi~~v~ig~~-------~~~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG 80 (273)
T cd03862 8 LRFPIYALELGSP-------DPKAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVG 80 (273)
T ss_pred CcceeEEEEecCC-------CCCCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCH
Confidence 4579999999876 346899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCC-----CCcCCcccccccccccee---EEEEee-ccC-CCCCCc-chHHHHHHhhHHHHHHHHHH
Q psy11074 157 FAAAKEGNL-----NTKQKRMQDFNYVHSNCF---EITMEL-SCC-KYPKAS-DLKHYWAANKESLIKLIENV 218 (710)
Q Consensus 157 ~~~~~~~~~-----NR~~pg~~d~~y~~~~~~---~~t~e~-~~~-~~p~~~-~l~~~w~~n~~al~~~~~~~ 218 (710)
+.+.+|.++ || ||.+.|..-. .-.-.. .|. .|.+.. ..+ |.+.+++..++.+.
T Consensus 81 ~~~~~R~n~~GVDLNR------Nfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~s---EpEt~al~~~~~~~ 144 (273)
T cd03862 81 MALKTRSNGNGVDLMR------NAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGM---ELEAQALCRFVREL 144 (273)
T ss_pred HHhcccCCCCCcccCC------CCCCCccccccccccCccCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHh
Confidence 998887764 77 7777664200 001112 243 465553 455 67888998888764
No 89
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=99.65 E-value=3.5e-15 Score=160.57 Aligned_cols=252 Identities=18% Similarity=0.179 Sum_probs=144.4
Q ss_pred EcccccCC--ceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEE
Q psy11074 385 TIGKSVQG--RNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYI 462 (710)
Q Consensus 385 ~iG~S~eG--r~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~i 462 (710)
.++++..| +.|++.++. .. ...|+++|+|++||+|+.|.+++++|++.|......+ .| +.+|++
T Consensus 4 ~~~~~~~g~~~~ipv~~~~---g~-----~~gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~~~-----~l-~G~v~i 69 (359)
T cd06250 4 PLPSPAPGTERELTVFRFG---GA-----GAGPKVYIQASLHADELPGMLVLHHLIELLKKLEAEG-----RI-LGEITL 69 (359)
T ss_pred ecccCCCCCeEEEEEEEEe---CC-----CCCCEEEEEeccccCchHHHHHHHHHHHHHhhhcccc-----cc-CceEEE
Confidence 34555555 668888887 21 1258999999999999999999999999998743222 13 347999
Q ss_pred EEeeCcccchhcccCCCCCCCCCCCCCC-CCcccCCCCCCCCCcc------c---C-------------------CCCCh
Q psy11074 463 VPSINPDGFAAAKEGKCDSLDGYVGRKN-AHGVDLNRNFPDQFEY------E---A-------------------KKVYE 513 (710)
Q Consensus 463 vP~~NPDG~~~~~~~~~~~~~~~~~R~n-~~GvDlNRnf~~~~~~------~---~-------------------~~~se 513 (710)
||++||+|+...+.. |..+|.+ ..|.||||.||..=+. + + .....
T Consensus 70 vP~~Np~g~~~~~~~------~~~~R~~p~dg~dlNR~FPg~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 143 (359)
T cd06250 70 VPVANPIGLNQRLGG------FHLGRFDLASGTNFNRDFPDLADAVADFVEGHLTSDPAANVALVRQALREALAALLPPT 143 (359)
T ss_pred EeCcChHHHHhhccc------cccccccCCCCCccCcCCCCcchhhHHHhhhhcccchHHHHHHHHHHHHHHHhccCCCc
Confidence 999999999753211 3346765 5999999999984310 0 0 00012
Q ss_pred HHHHHHHHHHHhC--CceEEEEecCCcccccccccCCC-CCCCCccccCCcccccccceEE--eecCch------hhhcc
Q psy11074 514 PETQAIMNFIYSN--PFVLSGNLHGGAVARDYASRNPM-MAPGHACGFDFKDGITNGNYWY--KVTGGM------QDFNY 582 (710)
Q Consensus 514 pEt~al~~~~~~~--~~~~~~~lH~~~~~~~y~~~~~~-~~~~~~~~~~~~~g~~~~~~~y--~~~G~~------~D~~y 582 (710)
-.++.+...+.+. ..++.+|||+++...+|...... ..........|.... .|. ...|+. .-|.-
T Consensus 144 ~~~~rla~~l~~~~~~aD~~IDLHsg~~~~~~vy~~~~~~~~~~~lA~~fg~~~----i~~~~~~~g~~~d~~~~~~~~~ 219 (359)
T cd06250 144 ELQSTLRLTLQRLALDADIVLDLHCDDEAVLHLYTAEALWPDAEPLARYLGAEA----VLLADNSGGGAFDEAFSCPWWA 219 (359)
T ss_pred cHHHHHHHHHHHHhhcCCEEEECCCCCccCceEEECCccChhHHHHHHHhCCCe----EEeccCCCCccchhhHhhHHHH
Confidence 2233355555444 78999999999775444322211 111111112222111 111 112211 11110
Q ss_pred ----------ccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCC--eEEEEeecc
Q psy11074 583 ----------VHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPS--AIITVRWND 650 (710)
Q Consensus 583 ----------~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~--A~v~v~~~~ 650 (710)
...+++++|+|+|....-..+.+.. -.+.++.+|.... -+.|.. .+.+. .........
T Consensus 220 l~~~~~~~~~~~~Gipait~E~G~~~~~~~~~~~~----~~~gi~~~L~~~g-~l~~~~-----~~~~~~~~~~~~~~~~ 289 (359)
T cd06250 220 LQARKGPGRPIPFGCEAVTVELRGQEDVDHALAEK----DAEAILRYLVHRG-VIAGDA-----APLPPLRRPATPLAGV 289 (359)
T ss_pred HHhhcccccccccCCeEEEEEcCCCcccCHHHHHH----HHHHHHHHHHHCc-CccCCC-----CCCCccccceEEccCc
Confidence 2368999999999977655555543 3556666664432 122221 11111 112222223
Q ss_pred cceeeCCCeEEEeeccCceE
Q psy11074 651 KAVTVTNRGEYWRLLARGKY 670 (710)
Q Consensus 651 ~~~~t~~~G~f~~~l~~G~y 670 (710)
..+.+...|.|...+.+|..
T Consensus 290 ~~v~Ap~~Gl~~~~~~~Gd~ 309 (359)
T cd06250 290 EMLYAPAGGMVVYRAAPGDW 309 (359)
T ss_pred EEEeCCCCeEEEEecCCCCE
Confidence 44677888888766777764
No 90
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.64 E-value=5.7e-16 Score=156.65 Aligned_cols=93 Identities=33% Similarity=0.475 Sum_probs=79.6
Q ss_pred eeeecCCceEEEEEEecCCCCC--CCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEE
Q psy11074 72 IGKSVQGRNLWAVEITHDVDSP--DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIV 149 (710)
Q Consensus 72 iG~S~eGr~i~~l~i~~~~~~~--~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~iv 149 (710)
||+|+|||||++++|++..... +....+||.|++.|++||+|+.|+++++.|+++|+.+ +...+.+|++..|+||
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~---~~~~~~ll~~~~i~iv 77 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLASA---SDEEAKMLENIVIVLI 77 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CHHHHHHHhCCEEEEE
Confidence 7999999999999999852110 1123479999999999999999999999999999874 4456899999999999
Q ss_pred eccCchhhhhhhcCCC-----CC
Q psy11074 150 PSINPDGFAAAKEGNL-----NT 167 (710)
Q Consensus 150 P~~NPDG~~~~~~~~~-----NR 167 (710)
|++||||+++.+|.+. ||
T Consensus 78 P~~NPDG~~~~~R~n~~g~DLNR 100 (226)
T cd03857 78 PRANPDGAALFTRENANGLDLNR 100 (226)
T ss_pred eccCCChHHhccccCCCcccCCC
Confidence 9999999999988875 88
No 91
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.64 E-value=3.2e-16 Score=161.25 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=75.3
Q ss_pred eeeecCCceEEEEEEecCCCC---------------CC----CCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcC
Q psy11074 72 IGKSVQGRNLWAVEITHDVDS---------------PD----GRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDG 132 (710)
Q Consensus 72 iG~S~eGr~i~~l~i~~~~~~---------------~~----~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~ 132 (710)
+|+|+|||||.++.|++.... +. .....+|.||+.++|||+||+|++++++++++|+..
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~-- 78 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAA-- 78 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHc--
Confidence 699999999999999984110 11 123358999999999999999999999999999987
Q ss_pred CChHHHHhhcceEEEEEeccCchhhhhh
Q psy11074 133 KDDRITQLLNSTDIYIVPSINPDGFAAA 160 (710)
Q Consensus 133 ~d~~~~~ll~~~~i~ivP~~NPDG~~~~ 160 (710)
.|+.++++|++++|+|+|++||||+++.
T Consensus 79 ~~~~~~~ll~~~~i~i~P~~NPDG~~r~ 106 (271)
T cd06238 79 QGDEIEALLDNAVVLIDPMQNPDGRDRF 106 (271)
T ss_pred CCHHHHHHHhcCEEEEEeccCCCHHHHH
Confidence 7889999999999999999999999963
No 92
>PRK10602 murein peptide amidase A; Provisional
Probab=99.61 E-value=8.8e-16 Score=154.33 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=95.9
Q ss_pred EEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEE
Q psy11074 67 VRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDI 146 (710)
Q Consensus 67 ~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i 146 (710)
+...+||+|+|||||++++++.+ +|+.++++|++||+||+|+++++++++.|..+ ...+
T Consensus 15 ~~~~~iG~S~egrpi~~l~~~~~---------~~~~vli~agiHG~E~~g~~~~~~l~~~l~~~------------~~~~ 73 (237)
T PRK10602 15 PGTEHYGRSLLGAPLLWFPAPAA---------SRESGLILAGTHGDETASVVTLSCALRTLTPS------------LRRH 73 (237)
T ss_pred ccccccccccCCCceEEEEcCCC---------CCceEEEEecCCCCcHHHHHHHHHHHHhhhhh------------ccce
Confidence 67889999999999999998754 38899999999999999999999999998653 3357
Q ss_pred EEEeccCchhhhhhhcCCC-----CCcCCccccccc-cccceeE---EEEeecc---CCCCCCcchHHHHHHhhHHHHHH
Q psy11074 147 YIVPSINPDGFAAAKEGNL-----NTKQKRMQDFNY-VHSNCFE---ITMELSC---CKYPKASDLKHYWAANKESLIKL 214 (710)
Q Consensus 147 ~ivP~~NPDG~~~~~~~~~-----NR~~pg~~d~~y-~~~~~~~---~t~e~~~---~~~p~~~~l~~~w~~n~~al~~~ 214 (710)
+|||++|||||+++.+.+| || ||+. .|..... -...-.| ..|++...++ +++..++..+
T Consensus 74 ~iipvvNPDG~~~~~R~n~~GvDLNR------nFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~S---epEt~al~~~ 144 (237)
T PRK10602 74 HVVLAVNPDGCQLGLRANANGVDLNR------NFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGS---EPETQALCQL 144 (237)
T ss_pred EEEEEECccccccccccCCCCCchhh------cCCCcccccccccccccCCCCccchhhccCCCCCC---CHHHHHHHHH
Confidence 8999999999999998887 88 5554 3321100 0000122 2478888888 8899999999
Q ss_pred HHHHhc
Q psy11074 215 IENVHR 220 (710)
Q Consensus 215 ~~~~~~ 220 (710)
+...+.
T Consensus 145 i~~~~~ 150 (237)
T PRK10602 145 IHRLQP 150 (237)
T ss_pred HHHcCC
Confidence 887553
No 93
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.59 E-value=1.3e-14 Score=152.27 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=129.5
Q ss_pred EEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhc
Q psy11074 395 LWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA 474 (710)
Q Consensus 395 i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~ 474 (710)
|+++.+. .. ...|.++|+||+||+|+.|..++..|++.|... ..+.+++++|++||.|+..
T Consensus 9 ~pv~~~~---g~-----~~gp~v~i~~giHGdE~~G~~~~~~l~~~l~~~----------~~~g~v~~vp~~Np~a~~~- 69 (287)
T cd06251 9 IPVHVIR---GK-----KPGPTLLLTAAIHGDELNGVEIIRRLLRQLDPK----------TLRGTVIAVPVVNVFGFLN- 69 (287)
T ss_pred eeEEEEe---CC-----CCCCEEEEEcCccCCchhHHHHHHHHHhcCCcc----------cCceEEEEEeCCCHHHHHh-
Confidence 5777776 11 135899999999999999999999998887431 1234788999999999974
Q ss_pred ccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC--CceEEEEecCCcc---cccccccCCC
Q psy11074 475 KEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN--PFVLSGNLHGGAV---ARDYASRNPM 549 (710)
Q Consensus 475 ~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~--~~~~~~~lH~~~~---~~~y~~~~~~ 549 (710)
..|.+..|.||||+||.... .+ ++-+....+++.. .+++++|||+++. ..+|......
T Consensus 70 -----------~~R~~~d~~dlNR~fpg~~~-----g~-~~~~~a~~i~~~~~~~~d~~iDlHs~~~~~~~~~~v~~~~~ 132 (287)
T cd06251 70 -----------QSRYLPDRRDLNRSFPGSKN-----GS-LASRIAHLFFTEILSHADYGIDLHTGAIGRTNLPQIRADLD 132 (287)
T ss_pred -----------ccccCCCccCHhhcCCCCCC-----CC-HHHHHHHHHHHHHHhhCCEEEEcCCCCCCCCccceEEEcCC
Confidence 24666789999999997432 22 3322222333332 3899999999864 1222221111
Q ss_pred CCCCCccccCCcccccccceEE-eecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceE
Q psy11074 550 MAPGHACGFDFKDGITNGNYWY-KVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVY 628 (710)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~~~~y-~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~ 628 (710)
..........|.... .+. ...++..+......+++++|+|+|....-..+.+.. -.+.++.++..... +.
T Consensus 133 ~~~~~~la~~~g~~~----il~~~~~~g~l~~~~~~~g~~aitvE~G~~~~~~~~~~~~----~~~gi~~~L~~~g~-l~ 203 (287)
T cd06251 133 NPEVLELARAFGAPV----ILNSPGRDGSLRAAAVDAGIPSITYEAGEALRFDEDAIRA----GVRGILNVLRHLGM-LD 203 (287)
T ss_pred CHHHHHHHHhcCCCE----EEeeCCCCchHHHHHHHcCCcEEEEeCCCCcccCHHHHHH----HHHHHHHHHHHCCC-cc
Confidence 111111112222111 111 112344555556789999999999875544444443 34455555543321 22
Q ss_pred EEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCce
Q psy11074 629 GIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGK 669 (710)
Q Consensus 629 G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~ 669 (710)
|. .+-+...+.+......+.+...|.|.....+|.
T Consensus 204 ~~------~~~~~~~~~~~~~~~~v~A~~~G~~~~~~~~Gd 238 (287)
T cd06251 204 GR------RTPKESEPVIARSSVWVRAPQGGLLRSLVKLGD 238 (287)
T ss_pred CC------CCCCCCceEEecCCeEEecCCCeEEEEecCCCC
Confidence 21 111112333433334567777888855555554
No 94
>KOG3641|consensus
Probab=99.58 E-value=7.8e-15 Score=156.73 Aligned_cols=166 Identities=22% Similarity=0.234 Sum_probs=140.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHH
Q psy11074 355 IDLQRYYNSTELDAFILKTVKSYP--HLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYA 432 (710)
Q Consensus 355 ~~~~~y~ty~e~~~~l~~l~~~~p--~~~~~~~iG~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~ 432 (710)
+.|.--+||.+|.-+|+.|++..+ -..+...++.+..||++.++.|+ . .....+|.|++.|.+|.+|..++.
T Consensus 374 faYhypyTy~~l~~hLn~les~~~~~~yfr~dVl~~tl~g~~~~l~tI~---~---ae~~~~~~IfLSaRVHpgeTnsSw 447 (650)
T KOG3641|consen 374 FAYHYPYTYSQLQCHLNGLESPKNPAFYFRYDVLLFTLVGRAMALATID---M---AECAPRPVIFLSARVHPGETNSSW 447 (650)
T ss_pred EeeccCccHHHHHhhhhcccCCCCcCcccchheeeeeecCCccceEEee---H---hhcCCcceEEEecccCCCCCcHHH
Confidence 455556899999999999998776 34777889999999999999998 2 122468999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCC
Q psy11074 433 LMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVY 512 (710)
Q Consensus 433 ~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~s 512 (710)
++-.+++.|+. +++....|.+.+.+.|+||+||||+.. ...|+...|.||||-|.. .++.+
T Consensus 448 vmkGilefl~s---~~p~aq~LRe~~vFKI~PMLNPDGV~~-----------GnyRCSL~G~DLNR~w~t-----ps~~s 508 (650)
T KOG3641|consen 448 VMKGILEFLVS---NSPLAQGLRESYVFKIVPMLNPDGVIV-----------GNYRCSLMGLDLNRMWST-----PSPAS 508 (650)
T ss_pred HHHHHHHHhhc---CCcHHHhhhhheeEecccccCCCceec-----------ccceeccccchhhhhcCC-----CCccc
Confidence 99999999998 678888899999999999999999874 356999999999999977 56668
Q ss_pred hHHHHHHHHHHHhC------CceEEEEecCCcc---cccccc
Q psy11074 513 EPETQAIMNFIYSN------PFVLSGNLHGGAV---ARDYAS 545 (710)
Q Consensus 513 epEt~al~~~~~~~------~~~~~~~lH~~~~---~~~y~~ 545 (710)
.|+..+.++++.+. ++.+.+|+||.+. ...|+.
T Consensus 509 hPsi~~~k~li~~l~~~~~~~p~~Y~DlHgHSqK~n~FvYGn 550 (650)
T KOG3641|consen 509 HPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQKVNHFVYGN 550 (650)
T ss_pred chhHHhHHHHHhhhhcccccCceEeecccccccccceEEecC
Confidence 89999888888776 3788999999988 445553
No 95
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.54 E-value=1e-14 Score=142.77 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHH
Q psy11074 48 NSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYL 127 (710)
Q Consensus 48 ~~~ei~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L 127 (710)
++.+|...|..| |. ... --+|+|||+|.+++|+. +||.|++.||+|||||+|+.++++++++|
T Consensus 3 ~~~~i~~~l~~~----~g-~~~--~a~S~EGR~I~~l~i~~----------~Kp~I~I~gGvHarEwig~~~al~fi~~L 65 (240)
T cd06232 3 SAGQIAYELAVL----PG-IEF--AARSRQGRPVTGRYVAG----------LDHPVVISAGQHANETSGVVGALRAAEAL 65 (240)
T ss_pred CHHHHHHHHhhc----CC-ccc--cccccCCCeeeEEEecC----------CCcEEEEeCCcCCCcchhHHHHHHHHHHH
Confidence 556666665544 33 111 56899999999999943 39999999999999999999999999999
Q ss_pred HHhcCCChHHHHhhcceEEEEEeccCchhhhhhh
Q psy11074 128 VLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 161 (710)
Q Consensus 128 ~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~ 161 (710)
++ +++++|+|+|++|||||++..
T Consensus 66 ~~-----------~~~~n~~I~P~vNPDGYe~~~ 88 (240)
T cd06232 66 AA-----------RPGAHFALIPLENPDGYALHE 88 (240)
T ss_pred hc-----------cCCceEEEEEeeCCcHHHhhc
Confidence 86 679999999999999999986
No 96
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=99.53 E-value=8.6e-14 Score=147.51 Aligned_cols=217 Identities=20% Similarity=0.178 Sum_probs=131.1
Q ss_pred cceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCC-C
Q psy11074 414 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA-H 492 (710)
Q Consensus 414 kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~-~ 492 (710)
.|+++|+||+||+|+.|..++..|++.|... .-+-+|++||++||-|+... .|.+. .
T Consensus 47 gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~----------~l~G~v~~vP~~N~~g~~~~------------~r~~p~d 104 (325)
T TIGR02994 47 GPTALLTGGNHGDEYEGPIALFELARTLDAE----------DVSGRIIIVPAMNYPAFRAG------------TRTSPID 104 (325)
T ss_pred CCEEEEEeccCCCchHHHHHHHHHHhhCChh----------hCcEEEEEEcCCCHHHHHhh------------CCCCCCC
Confidence 4899999999999999999999999998541 12457999999999998643 34443 7
Q ss_pred cccCCCCCCCCCcccCCCCChHHHHHHHHHHH-hC--CceEEEEecCCccccc---ccccCCCCCC-----CCccccCCc
Q psy11074 493 GVDLNRNFPDQFEYEAKKVYEPETQAIMNFIY-SN--PFVLSGNLHGGAVARD---YASRNPMMAP-----GHACGFDFK 561 (710)
Q Consensus 493 GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~-~~--~~~~~~~lH~~~~~~~---y~~~~~~~~~-----~~~~~~~~~ 561 (710)
|.||||.||. ....+ . ++.|+.++. +. ..++.+|||+++.... |...+..... .......|.
T Consensus 105 ~~nlNR~fPG-----~~~gs-~-~~riA~~l~~~l~~~aD~~iDlHs~~~~~~~~P~v~~~~~~~~~~~~~~~~lA~~fg 177 (325)
T TIGR02994 105 RGNLNRSFPG-----RPDGT-V-TEKIADYFQRHLLPLADIVLDFHSGGKTLDFVPFAAAHILPDKAQEAKCFDAVAAFA 177 (325)
T ss_pred CCccCCCCCC-----CCCCC-H-HHHHHHHHHHhHHhhCCEEEECCCCCccccccceEEEecCCcchhhHHHHHHHHhcC
Confidence 9999999998 22222 2 555655553 32 6899999999987322 2222111000 000112222
Q ss_pred ccccccceEEeecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCC
Q psy11074 562 DGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPS 641 (710)
Q Consensus 562 ~g~~~~~~~y~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~ 641 (710)
....- .......|++.|++....|++++|+|+|+...-..+.+... .+.++.+|.... .+.|.+ .+.+.
T Consensus 178 ~p~~~-~~~~~~~~gs~~~a~~~~Gip~i~~E~Gg~~~~~~~~~~~~----~~gi~~vL~~lg-ml~~~~-----~~~~~ 246 (325)
T TIGR02994 178 APYSM-KMLEIDSVGMYDTAAEEMGKVFVTTELGGGGTASARTIKIA----KRGVRNVLRHAG-ILKGEL-----EIAPT 246 (325)
T ss_pred CCeEE-EeccCCCCccHHHHHHHCCCeEEEEeCCCCCcCCHHHHHHH----HHHHHHHHHHcC-CcCCCC-----CCCCc
Confidence 11100 00011345778888878999999999999877665555533 555666664432 122221 11111
Q ss_pred eEEEEeecccceeeCCCeEEEeeccCceE
Q psy11074 642 AIITVRWNDKAVTVTNRGEYWRLLARGKY 670 (710)
Q Consensus 642 A~v~v~~~~~~~~t~~~G~f~~~l~~G~y 670 (710)
..+.+......+.+...|.|...+.+|..
T Consensus 247 ~~~~~~~~~~~v~Ap~~Gi~~~~v~~G~~ 275 (325)
T TIGR02994 247 IWLDMPSDDCFIFAEDDGLIEFMIDLGDP 275 (325)
T ss_pred cceecCCCCeEEEcCCCeEEEEecCCCCE
Confidence 22222222334677788888666666653
No 97
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.52 E-value=1e-13 Score=140.95 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHHHHCCCcEEEEeeeeecCCceEEEEEEecCCCCCC----CCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhc
Q psy11074 56 ILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPD----GRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD 131 (710)
Q Consensus 56 l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~----~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y 131 (710)
|+......+..++...+++|.+||++.+|.|++...... .....||.||+.|++|++|..|+.++..++..|+.
T Consensus 4 l~~~~~~~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~-- 81 (278)
T cd06906 4 LESLHDPQQIYFRQQVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGETNASWVMKGTLEFLMS-- 81 (278)
T ss_pred HhhhcCCcccEEeeecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcchHHHHHHHHHHHHhC--
Confidence 333444445679999999999999999999998521100 11246999999999999999999999999998875
Q ss_pred CCChHHHHhhcceEEEEEeccCchhhhhhh
Q psy11074 132 GKDDRITQLLNSTDIYIVPSINPDGFAAAK 161 (710)
Q Consensus 132 ~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~ 161 (710)
.|+.++.|+++++|+||||+||||+.+..
T Consensus 82 -~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn 110 (278)
T cd06906 82 -SSPTAQSLRESYIFKIVPMLNPDGVINGN 110 (278)
T ss_pred -CCHHHHHHHHhCcEEEEeeecCccceecc
Confidence 58999999999999999999999999865
No 98
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.52 E-value=1.1e-13 Score=145.74 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=127.0
Q ss_pred CcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCC-C
Q psy11074 413 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKN-A 491 (710)
Q Consensus 413 ~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n-~ 491 (710)
+.|+++|+|++||+|..|..++.+++++|......+ .+.-+.++++||++||.|+.. ..|.. .
T Consensus 18 ~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~----~~~l~g~v~~vP~~N~~a~~~------------~~R~~p~ 81 (298)
T cd06253 18 GEKRICIVGGIHGDELQGLYICSLLIRFLKELEKRG----PLKLNGIVDVIPSVNPLGLNL------------GTRFWPT 81 (298)
T ss_pred CCcEEEEEccCccchHHHHHHHHHHHHHHhhhhccc----ccccCceEEEEeCcCHHHHHH------------hhCcCCC
Confidence 478999999999999999999999999998632111 122367999999999999864 24554 3
Q ss_pred CcccCCCCCCCCCcccCCCCChHHHHHHHHHHHh--CCceEEEEecCCcccccc---cccCCCC-CCCCccccCCccccc
Q psy11074 492 HGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYS--NPFVLSGNLHGGAVARDY---ASRNPMM-APGHACGFDFKDGIT 565 (710)
Q Consensus 492 ~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~--~~~~~~~~lH~~~~~~~y---~~~~~~~-~~~~~~~~~~~~g~~ 565 (710)
.|.||||.||..-.+ ..++.++..+.+ -..++.+|||+++....+ -...... .........|...
T Consensus 82 d~~dlNR~Fpg~~~g-------~~~~riA~~~~~~~~~~d~~iDLHsg~~~~~~~p~v~~~~~~~~~~~~lA~~fg~~-- 152 (298)
T cd06253 82 DNSDINRMFPGDPQG-------ETTQRIAAAVFEDVKGADYCIDLHSSNIFLEEIPQVRLYKTGSESLLPLAKFLNLD-- 152 (298)
T ss_pred CCCcccccCCCCCCC-------cHHHHHHHHHHHHhcCCCEEEEccCCCcccccCCeEEEcCCCCHHHHHHHHHhCCC--
Confidence 799999999973221 123444433333 267999999998652211 1111000 0001111222211
Q ss_pred ccceEEe----ecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccccceEEEEEcCCCCCCCC
Q psy11074 566 NGNYWYK----VTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPS 641 (710)
Q Consensus 566 ~~~~~y~----~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~d~~g~pi~~ 641 (710)
..|.. ..++...+.....+++++|+|+|++..-..+.... -.+.++.++.... -+.|.. . .+.+.
T Consensus 153 --~i~~~~~~~~~~g~~~~~~~~~g~paitvE~G~~~~~~~~~~~~----~~~gi~~~L~~~g-~l~g~~--~--~~~~~ 221 (298)
T cd06253 153 --VIWIHPSSTVDEATLAHNLQVWGTPAFSVEMGVGMRIDKEYANQ----IVSGILRFMTKMG-ILKGNV--H--NGYRS 221 (298)
T ss_pred --EEEecCCCCcchhhHHHHHHHhCCeEEEEEcCCCcccCHHHHHH----HHHHHHHHHHHCc-CccCCC--C--CCCCC
Confidence 11211 11233344456789999999999876655444443 3455666664432 133321 0 11111
Q ss_pred eEEEEeecccceeeCCCeEEEeeccCceE
Q psy11074 642 AIITVRWNDKAVTVTNRGEYWRLLARGKY 670 (710)
Q Consensus 642 A~v~v~~~~~~~~t~~~G~f~~~l~~G~y 670 (710)
. .........+.+...|.|...+.+|..
T Consensus 222 ~-~~~~~~~~~v~A~~~Gl~~~~~~~G~~ 249 (298)
T cd06253 222 T-IAEERDVVYVNAETSGIFVPAKHLGDI 249 (298)
T ss_pred c-eeecCceEEEEcCCCeEEEECcCCCCE
Confidence 1 112122345677778888655666653
No 99
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.51 E-value=1.7e-13 Score=143.97 Aligned_cols=229 Identities=20% Similarity=0.135 Sum_probs=129.8
Q ss_pred ceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccch
Q psy11074 393 RNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFA 472 (710)
Q Consensus 393 r~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~ 472 (710)
-.|++.+|. .. ...|.++|+||+||+|+.|..++..|++.|-.. .-+..++++|++||.|++
T Consensus 4 ~~~pv~~~~---g~-----~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~----------~~~g~v~~vp~~N~~a~~ 65 (288)
T cd06254 4 LAIPVTLIN---GV-----NPGPTLAITAGVHGGEYPGIQALQKLAREIDPA----------KLSGTLIIVHVLNLSGFY 65 (288)
T ss_pred ccccEEEEe---CC-----CCCCEEEEEecccCCchhHHHHHHHHHHhCCcc----------cCeEEEEEEeCcCHHHHH
Confidence 356777776 11 135899999999999999999999999887331 124579999999999987
Q ss_pred hcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC---CceEEEEecCCccc---cccccc
Q psy11074 473 AAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN---PFVLSGNLHGGAVA---RDYASR 546 (710)
Q Consensus 473 ~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~---~~~~~~~lH~~~~~---~~y~~~ 546 (710)
.. ...+....|.||||+||....+ .+++.++.++.+. +.++.+|||+++.. .+|...
T Consensus 66 ~~----------~r~~~~~d~~dlNR~fpg~~~g-------~~~~r~a~~~~~~~~~~~d~~iDlHs~~~~~~~~p~~~~ 128 (288)
T cd06254 66 AR----------TPYIVPEDGKNLNRVFPGDKDG-------TLTERIAYFLTEEVIDKADFLIDLHSGDGNEQLRPYVYY 128 (288)
T ss_pred hc----------CcccCCCCCCchhhcCCCCCCC-------CHHHHHHHHHHHHHHhhCcEEEECCCCCCccccCceEEe
Confidence 42 1112345899999999984332 2344555544332 68999999998652 122111
Q ss_pred CCCC-CCCC-c-cccCCcccccccceEEeecC--chhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhh
Q psy11074 547 NPMM-APGH-A-CGFDFKDGITNGNYWYKVTG--GMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIE 621 (710)
Q Consensus 547 ~~~~-~~~~-~-~~~~~~~g~~~~~~~y~~~G--~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~ 621 (710)
.... .... . ....+..+. ...+...+ ++..+.....+++++|+|+|....-..+.+. .-.+.++.++.
T Consensus 129 ~~~~~~~~~~~~~~~a~~~~~---~~i~~~~~~~~~~~~~a~~~G~~a~tiE~G~~~~~~~~~~~----~~~~gi~~~L~ 201 (288)
T cd06254 129 PVTGDEDVRTASLAAAFGIDH---IIIYRSRDRSGGSYNYAATRGIPAILLERGGLGTCDAEDVE----AYKDDIYNVLR 201 (288)
T ss_pred cCCcchhhhHHHHHHHhCCCC---eEEecCCCCCccHHHHHHHcCCcEEEEECCCCCCCCHHHHH----HHHHHHHHHHH
Confidence 0000 0000 0 000111110 01111111 2333333467999999999986654444443 34566677765
Q ss_pred ccccceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceE
Q psy11074 622 NVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKY 670 (710)
Q Consensus 622 q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y 670 (710)
.... +.|.. ...+ ...........+.+...|.|...+.+|..
T Consensus 202 ~lg~-l~~~~---~~~~---~~~~~~~~~~~v~Ap~~G~~~~~~~~G~~ 243 (288)
T cd06254 202 HLGM-LEGKK---PPEE---VPIPEIDDVYYVTSPASGLWYPFVKAGDT 243 (288)
T ss_pred HcCC-ccCCC---CCCC---CCceeccCCEEEecCCCeEEEEecCCCCE
Confidence 5422 33221 1111 12122223344566777887656667764
No 100
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.48 E-value=5.9e-13 Score=141.60 Aligned_cols=229 Identities=18% Similarity=0.125 Sum_probs=133.1
Q ss_pred CceEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccc
Q psy11074 392 GRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471 (710)
Q Consensus 392 Gr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~ 471 (710)
.-.|++..|. .. + -|+++|+||+||+|..|..++.+++++|... .-+.+++++|++||.|+
T Consensus 21 ~~~iPv~v~~---g~-----~-gp~v~I~aGiHGdE~~G~~~~~~L~~~l~~~----------~l~G~vi~vP~~Np~a~ 81 (316)
T cd06252 21 TVMIPITVIK---NG-----D-GPTVLLTGGNHGDEYEGQIALLRLARRLDPE----------EVRGRVIILPALNFPAV 81 (316)
T ss_pred ceEeeEEEEe---CC-----C-CCEEEEEccCCCCchHHHHHHHHHHHhCChh----------hCeEEEEEEeCCCHHHH
Confidence 3578888887 21 2 4899999999999999999999999998542 12458999999999999
Q ss_pred hhcccCCCCCCCCCCCCCCC-CcccCCCCCCCCCcccCCCCChHHHHHHHHHHHh-C--CceEEEEecCCcccccc---c
Q psy11074 472 AAAKEGKCDSLDGYVGRKNA-HGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYS-N--PFVLSGNLHGGAVARDY---A 544 (710)
Q Consensus 472 ~~~~~~~~~~~~~~~~R~n~-~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~-~--~~~~~~~lH~~~~~~~y---~ 544 (710)
.. ..|.+. .|.||||.||....+ .. ++.++.++.+ + +.++.+|||+++....+ .
T Consensus 82 ~~------------~~R~~p~D~~DLNR~Fpg~~~g------s~-~~riA~~i~~~l~~~aD~~iDLHt~~~~~~~~p~~ 142 (316)
T cd06252 82 QA------------GTRTSPIDGGNLNRVFPGDPDG------TV-TEMIAHYLTTELLPRADYVIDLHSGGRSLDFLPFA 142 (316)
T ss_pred Hh------------ccccCCCCCCcHHhhCCCCCCC------CH-HHHHHHHHHHhhhhcCcEEEEccCCCCccccCCeE
Confidence 64 246654 689999999984221 22 3334444433 3 68999999998653322 1
Q ss_pred ccCC--C---CCCCCccccCCcccccccceEEe---ecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhh
Q psy11074 545 SRNP--M---MAPGHACGFDFKDGITNGNYWYK---VTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESL 616 (710)
Q Consensus 545 ~~~~--~---~~~~~~~~~~~~~g~~~~~~~y~---~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~l 616 (710)
..+. . ..........|... ..+.. ..+++.+......+++++|+|+|+...-..+.+. .-.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~----~il~~~~~~~~g~~~~~a~~~G~~~itiE~G~~~~~~~~~~~----~~~~gi 214 (316)
T cd06252 143 LMHRLPDPEQEARCLAAARAFGAP----YTLLMREIDEAGTFDAAAERLGKTFVSTELGGGGTVTPDAVA----IAERGV 214 (316)
T ss_pred EeeccCChhhhHHHHHHHHHhCCC----EEEEecCCCCcccHHHHHHHCCCcEEEEeCCCCCccCHHHHH----HHHHHH
Confidence 1110 0 00011111222211 11111 1234444444567899999999986654444433 334555
Q ss_pred hhhhhccccceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceE
Q psy11074 617 IKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKY 670 (710)
Q Consensus 617 l~~i~q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y 670 (710)
+.++..... +.|.. ...+-....+.+......+.+...|.|...+.+|..
T Consensus 215 ~~~L~~lg~-l~~~~---~~~~~~~~~~~~~~~~~~v~A~~~G~~~~~~~~G~~ 264 (316)
T cd06252 215 RNVLIHLGI-LDGDP---DAPPEATRALDVPDARCYVFAPHPGLFEPLVDLGDE 264 (316)
T ss_pred HHHHHHcCC-ccCCC---CCCCCCcceEEecCCcEEEEcCCCeEEEEecCCCCE
Confidence 555544321 22221 111111122233333345677777888666677654
No 101
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.47 E-value=7.9e-13 Score=139.01 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=134.0
Q ss_pred ccccCCce--EEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEE
Q psy11074 387 GKSVQGRN--LWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVP 464 (710)
Q Consensus 387 G~S~eGr~--i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP 464 (710)
++...|.+ |++..+. .. ...|.++++||+||+|..|.+++..|++.|... .+ +.+++++|
T Consensus 3 ~~~~~g~~~~~pv~~~~---g~-----~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~---------~~-~g~~~~vp 64 (293)
T cd06255 3 GTMADGSAVALPVTILR---GA-----EPGPTLWLHAQVHGNEYNGTQAIVDLYRSLDPA---------AL-KGRLVALP 64 (293)
T ss_pred ccCCCCCccceeEEEEe---CC-----CCCCEEEEEcccCCCcHHHHHHHHHHHHhCCHh---------hc-CCeEEEEe
Confidence 44445554 6777776 11 124899999999999999999999999997531 12 34788999
Q ss_pred eeCcccchhcccCCCCCCCCCCCCCCC-CcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCCcccc-c
Q psy11074 465 SINPDGFAAAKEGKCDSLDGYVGRKNA-HGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAVAR-D 542 (710)
Q Consensus 465 ~~NPDG~~~~~~~~~~~~~~~~~R~n~-~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~-~ 542 (710)
++||.|+... .|.+. .+.||||.||..-. ...++..+.++.+.+. -..++.+|||+++... .
T Consensus 65 ~~N~~a~~~~------------~R~~p~d~~dlNR~fpg~~~---g~~~~r~A~~~~~~~~-~~~d~~iDlHs~~~~~~~ 128 (293)
T cd06255 65 TANPTALDAR------------TRMSPFDELDLNRTFPGNPN---GMVTQQMAHALFEEVR-GVADYLVDLHTMTTISKR 128 (293)
T ss_pred CcCHHHHHhh------------cccCCCCCCCcccCCCCCCC---CCHHHHHHHHHHHHHH-hcCCEEEECCCCCCCCCC
Confidence 9999999742 46675 89999999997211 1122333333333222 2579999999986521 1
Q ss_pred c---cccC-CCCCCCCccccCCcccccccceEEee----cCchhhhccccCC-eEEEEEEecCCCCCCchhhHHHHHHhh
Q psy11074 543 Y---ASRN-PMMAPGHACGFDFKDGITNGNYWYKV----TGGMQDFNYVHSN-CFEITMELSCCKYPKASDLKHYWAANK 613 (710)
Q Consensus 543 y---~~~~-~~~~~~~~~~~~~~~g~~~~~~~y~~----~G~~~D~~y~~~~-~~~~T~Elg~~~~p~~~~l~~~w~~n~ 613 (710)
| .... ........+...|...... ..+-.. .|++...+ ...+ ++++|+|+|++..-..+.+.. -.
T Consensus 129 ~~v~~~~~~~~~~~~~~lA~~fg~~~~~-~~~~~~~~~~~g~~~~~a-~~~g~ipait~E~G~~~~~d~~~~~~----~~ 202 (293)
T cd06255 129 YTVYKVYPGVTEENLERMTRAFGSKLYR-PDVGGKGELLPGNIAGVL-DYQCLVPAFMVELGGGGPYQPENVER----AA 202 (293)
T ss_pred CeEEecCCccccHHHHHHHHHcCCCEEe-eccCCCCCcCCccHHHHH-HHCCCCcEEEEeCCCCccCCHHHHHH----HH
Confidence 1 1000 0000001111223211100 000000 24433333 4457 899999999987766555553 35
Q ss_pred hhhhhhhhccccceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEE
Q psy11074 614 ESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYV 671 (710)
Q Consensus 614 ~~ll~~i~q~~~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~ 671 (710)
+.+++++.... .+.|.+. ...+.. ..+ . ...+.+...|.|.....+|.+.
T Consensus 203 ~GI~~vL~~lg-ml~~~~~--~~~~~~---~~~-~-~~~v~Ap~~Gi~~~~~~~G~~V 252 (293)
T cd06255 203 TGLRNMLRHLG-ILDGEVE--DHAPAP---AFV-S-RDWVAAIHGGLFEPSVPAGDTI 252 (293)
T ss_pred HHHHHHHHHCC-CccCCCc--cCCCCC---eee-e-eEEEecCCCeEEEEecCCCCEe
Confidence 56666664432 2344321 111211 111 1 3446677888887667777653
No 102
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.44 E-value=1.5e-12 Score=133.81 Aligned_cols=115 Identities=25% Similarity=0.315 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEc---ccccCCceEEEEEEeccCCCCCCCCCCcceEEEeeccccCc-cchHHHHHH
Q psy11074 361 YNSTELDAFILKTVKSYPHLVRAETI---GKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDE-TVGYALMVF 436 (710)
Q Consensus 361 ~ty~e~~~~l~~l~~~~p~~~~~~~i---G~S~eGr~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E-~~g~~~~l~ 436 (710)
.+|+|-.+.+.+-++.-.-..+-+.+ |..-+--+|+++.|+ .. ...|.+++++|+||.| .+|+.+++.
T Consensus 3 ~sY~eAR~kFl~aA~~aga~~~~~~~~~~gp~g~~l~i~v~~~g---~~-----~~~~~l~i~sGvHG~Eg~~Gs~~~~~ 74 (283)
T cd06233 3 QSYAEAREKFLAAAKAAGAALESYVHPLLGPDGEALAIDVARLG---PA-----DAKRLLVITSGTHGVEGFCGSAIQLA 74 (283)
T ss_pred ccHHHHHHHHHHHHHHcCccceeeeccCCCCCCceeeeeEEEEc---CC-----CCCcEEEEEecccCCcccchHHHHHH
Confidence 37888887777777755432233232 322222358888888 11 2356999999999999 799999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCC
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQ 503 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~ 503 (710)
+++.+.. ..+..+..|++||++||.|+.. ..|.|.+||||||||-+.
T Consensus 75 ll~~~~~--------~~~~~~~~vi~vh~vNP~Gf~~------------~~R~nedgvDLNRnf~d~ 121 (283)
T cd06233 75 LLRELLP--------RSLPAGVAVLLVHALNPYGFAH------------LRRVNENNVDLNRNFLDF 121 (283)
T ss_pred HHHhcch--------hhccCCceEEEEeCcCHHHHhh------------cccCCCCCCChhhccccc
Confidence 9999875 2455678999999999999963 468899999999999554
No 103
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=99.38 E-value=3.5e-13 Score=142.50 Aligned_cols=180 Identities=22% Similarity=0.241 Sum_probs=110.9
Q ss_pred cceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCC-C
Q psy11074 414 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA-H 492 (710)
Q Consensus 414 kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~-~ 492 (710)
-|+++|+||+||+|+.|.+++.+|+++|.... -+.+++++|++||.|+... .|... .
T Consensus 2 Gp~l~i~agvHGnE~~G~~a~~~L~~~l~~~~----------~~G~~~~vp~~N~~a~~~~------------~R~~~~d 59 (292)
T PF04952_consen 2 GPTLLITAGVHGNEYNGIEALQRLLRELDPAD----------LSGTVIIVPVANPPAFRQG------------TRFVPID 59 (292)
T ss_dssp S-EEEEEE-SSTTBCHHHHHHHHHHHHHHGGG----------CTCEEEEEEESSHHHHHHT------------SSSSTTT
T ss_pred CCEEEEEcCcccChHHHHHHHHHHHhcchhcc----------cCCceEEEEEeCHHHHHhc------------cccCCCC
Confidence 38999999999999999999999999997632 3458999999999999753 35544 8
Q ss_pred cccCCCCCCCCCcccC--CCCChHHHHHHHHHHHhC---CceEEEEecCCcccccccccCC-CCCCC----CccccCCcc
Q psy11074 493 GVDLNRNFPDQFEYEA--KKVYEPETQAIMNFIYSN---PFVLSGNLHGGAVARDYASRNP-MMAPG----HACGFDFKD 562 (710)
Q Consensus 493 GvDlNRnf~~~~~~~~--~~~sepEt~al~~~~~~~---~~~~~~~lH~~~~~~~y~~~~~-~~~~~----~~~~~~~~~ 562 (710)
|.||||.||....++. ......+++.++..+.+. +.++.+|||+++....+..... ..... ......|..
T Consensus 60 ~~dLNR~Fpg~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~aD~~iDLHs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 139 (292)
T PF04952_consen 60 GRDLNRCFPGDALGSSLQEDYEATETERIAHALFEEILPDADYVIDLHSGSSSSDHPPFVRYPENDDEAQLLALARAFGA 139 (292)
T ss_dssp SSBGGGSTTHHHHCHCTTHHHHHHHHHHHHHHHHHTTCCCGSEEEEEEEESSTBEEEEEEEEECGSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCCCccccccccccchhHHHHHHHHHhhhhhccceEEEEeccCCCCCccceEEEecccchhhHhhhhHHHcCC
Confidence 9999999997433200 011225667777766654 6899999999876331111100 00000 011111111
Q ss_pred cccccceE--E-eecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhcc
Q psy11074 563 GITNGNYW--Y-KVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENV 623 (710)
Q Consensus 563 g~~~~~~~--y-~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~ 623 (710)
...+ . ...+++..+.....+++++|+|+|....-..+.+.. -...++.++...
T Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~g~~a~tvE~G~~~~~~~~~~~~----~~~~i~~~L~~~ 195 (292)
T PF04952_consen 140 ----PAVLILDEDGTGGTLRSAANRAGIPAVTVELGGGGDFDEEAVEQ----AVDGILNVLRHL 195 (292)
T ss_dssp ----SEEEEEESSHCSSHHHHHHHHCSSEEEEEEEEETTTTTHHHHHH----HHHHHHHHHHHH
T ss_pred ----CeEEEEeeCCCccchhHHHHhcCCeEEEEEeCCCCCCCHHHHHH----HHHHHHHHHHHh
Confidence 1122 1 122455666667789999999999875544444443 344444554443
No 104
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.37 E-value=1.9e-12 Score=130.90 Aligned_cols=85 Identities=24% Similarity=0.307 Sum_probs=74.8
Q ss_pred CcEEEEeeeeecC-CceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcc
Q psy11074 65 HLVRAETIGKSVQ-GRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNS 143 (710)
Q Consensus 65 ~~~~~~~iG~S~e-Gr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~ 143 (710)
...++..+|+..+ |++|+++++.+. ++++|.|+++||+||+|+.|+.++++|++.++. .++++
T Consensus 13 ~~~~~~~~g~~~~~~~pL~~l~~~~~-------~~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~~---------~~l~~ 76 (236)
T cd06231 13 SRLDVREYGQLAYQSYPLYALKSRGW-------DSDLPRVLITAGIHGDEPAGPLGALEFLRAAAL---------ELAQD 76 (236)
T ss_pred cceEEEEccccccCCeeEEEEEcCCC-------CCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHH---------HHhcC
Confidence 3488888998876 999999999765 346999999999999999999999999999864 37889
Q ss_pred eEEEEEeccCchhhhhhhcCCC
Q psy11074 144 TDIYIVPSINPDGFAAAKEGNL 165 (710)
Q Consensus 144 ~~i~ivP~~NPDG~~~~~~~~~ 165 (710)
..|+|+|++||||++..+|.++
T Consensus 77 ~~i~ivP~vNPdG~~~~~R~n~ 98 (236)
T cd06231 77 VNLSVYPCINPSGFEAITRWNR 98 (236)
T ss_pred CeEEEEECcChhHHhcCccCCC
Confidence 9999999999999999888754
No 105
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.36 E-value=1.1e-12 Score=130.28 Aligned_cols=105 Identities=32% Similarity=0.554 Sum_probs=87.9
Q ss_pred EEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhh-hhcCCC-----CCcC-------
Q psy11074 103 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAA-AKEGNL-----NTKQ------- 169 (710)
Q Consensus 103 v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~-~~~~~~-----NR~~------- 169 (710)
|+++|++||+|++|++++++++++|+..+..+ +.+|++.+|+|+|++||||+++ .+|.+. ||+.
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~---~~l~~~~~i~iiP~~NPdG~~~~~~R~n~~g~DlNR~f~~~~~~~ 77 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRD---TKLLENGRLLVVPVLNPDGYEAVNWRKNANGVDLNRNFPGLWGKG 77 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcch---HHHHhCCeEEEEeCcccccceeeeEEeCCCCcCccCCCCCcccCC
Confidence 68999999999999999999999999875433 7899999999999999999999 676654 7711
Q ss_pred ----------------------------------C-------------------------------------------cc
Q psy11074 170 ----------------------------------K-------------------------------------------RM 172 (710)
Q Consensus 170 ----------------------------------p-------------------------------------------g~ 172 (710)
| ++
T Consensus 78 ~~~~~e~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (196)
T cd00596 78 PLSEPETRALAELIQQRKVDLYIDLHSGSLGVLYPYSHSDTPPPDAEIPKALAQLLADAARGSKYGVGFGAKWYETGGGF 157 (196)
T ss_pred CCCcHHHHHHHHHHHhCCceEEEEEecCCceEEecCCCCCCCCCCHHHHHHHHHHHHHhccCCCCceeecceEEEcCCch
Confidence 0 24
Q ss_pred ccccccccceeEEEEeeccCCCCCCcchHHHHHHhhHH
Q psy11074 173 QDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKES 210 (710)
Q Consensus 173 ~d~~y~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~a 210 (710)
.||.|...+|+.+|+|++|+.+|....+...|+.++.+
T Consensus 158 ~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd00596 158 DDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEA 195 (196)
T ss_pred hhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 77888777899999999999998888888888877654
No 106
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.35 E-value=4.5e-12 Score=130.82 Aligned_cols=95 Identities=23% Similarity=0.222 Sum_probs=71.6
Q ss_pred EEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccC
Q psy11074 417 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDL 496 (710)
Q Consensus 417 v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDl 496 (710)
++|+||+||+|+.|.+++..|++++.... ..+.+++++|++||+|++.. .|.+. .||
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~---------~l~g~v~~vp~~N~~g~~~~------------~R~~~--~DL 57 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ---------ALRGPVKLVPAANPLALEAG------------QRYLD--RDL 57 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc---------ccccEEEEEeCcCHHHHHhC------------CCCCC--cCC
Confidence 57999999999999999999999987621 23567999999999999742 45554 999
Q ss_pred CCCCCCCCcccCCCCChHHHHHHHHHHHhCC--ceEEEEecCCcc
Q psy11074 497 NRNFPDQFEYEAKKVYEPETQAIMNFIYSNP--FVLSGNLHGGAV 539 (710)
Q Consensus 497 NRnf~~~~~~~~~~~sepEt~al~~~~~~~~--~~~~~~lH~~~~ 539 (710)
||+||..-. ...+|.+....+.+.+. .++.+|+|+++.
T Consensus 58 NR~fpg~~~-----~~~~~~~~a~~l~~~i~~~~d~~iDlH~~~~ 97 (252)
T cd06230 58 NRIFPGDPD-----SGTYEDRLAAELCPELEGLADAVLDLHSTSS 97 (252)
T ss_pred CCCCCCCCC-----CCCHHHHHHHHHHHHHhhhccEEEECCCCCC
Confidence 999998322 12455554444444442 799999999875
No 107
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=99.32 E-value=1.8e-11 Score=105.02 Aligned_cols=83 Identities=27% Similarity=0.448 Sum_probs=76.1
Q ss_pred eEEEEEcCC-CCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEecCc
Q psy11074 627 VYGIVTDTY-GNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKN 705 (710)
Q Consensus 627 I~G~V~d~~-g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~~~ 705 (710)
|+|+|+|.. |+|+++|+|.+.+...++.||.+|.|...+++|.|+|.+++.||++.... +.+..++...++|.|.++.
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~~~~~-i~~~~~~~~~~~i~L~~~~ 80 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIKLPEGDYTLKISYIGYETKTIT-ISVNSNKNTNLNIYLEPKS 80 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEEEcCCCeEEEEEEeCEEEEEEE-EEecCCCEEEEEEEEeeCc
Confidence 799999966 99999999999999999999999999445999999999999999999999 8887776677899999999
Q ss_pred CccCC
Q psy11074 706 AFVTP 710 (710)
Q Consensus 706 ~~L~e 710 (710)
.+|+|
T Consensus 81 ~~L~e 85 (88)
T PF13715_consen 81 NQLDE 85 (88)
T ss_pred ccCCe
Confidence 99987
No 108
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=99.26 E-value=2.3e-11 Score=102.76 Aligned_cols=76 Identities=33% Similarity=0.580 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCCCCCeEEEEee----cccceeeCCCeEE-EeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEE
Q psy11074 627 VYGIVTDTYGNPLPSAIITVRW----NDKAVTVTNRGEY-WRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFML 701 (710)
Q Consensus 627 I~G~V~d~~g~pi~~A~v~v~~----~~~~~~t~~~G~f-~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L 701 (710)
|+|+|+|.+|+||++|.|.+.. ....+.||.+|.| +..|+||.|.|.+++.||++...+.|.|..++...++|.|
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~L 81 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDITL 81 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEEE
Confidence 8999999999999999999984 3466899999999 6679999999999999999999844999999999999998
Q ss_pred e
Q psy11074 702 G 702 (710)
Q Consensus 702 ~ 702 (710)
+
T Consensus 82 ~ 82 (82)
T PF13620_consen 82 E 82 (82)
T ss_dssp E
T ss_pred C
Confidence 5
No 109
>COG3608 Predicted deacylase [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=119.59 Aligned_cols=174 Identities=24% Similarity=0.249 Sum_probs=107.3
Q ss_pred CcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCC-
Q psy11074 413 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA- 491 (710)
Q Consensus 413 ~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~- 491 (710)
.-|.++++|+.||+|..|..++..|++.|-... =.-+|+|||.+||-+++.. +|...
T Consensus 47 ~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~a~----------i~GtV~iVP~aN~~a~~~~------------~R~~p~ 104 (331)
T COG3608 47 PGPSVLLQAGVHGDELPGVIALRRLIPALDPAD----------ISGTVIIVPIANPPAFEAQ------------GRFSPG 104 (331)
T ss_pred CCCEEEEEecccccccchHHHHHHHHHhcCHhh----------cCceEEEEeccCHHHHHhh------------cccCCC
Confidence 358999999999999999999999999996632 2358999999999998753 45543
Q ss_pred CcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC---CceEEEEecCCcccccccccCCCC--CCCCccc------cCC
Q psy11074 492 HGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN---PFVLSGNLHGGAVARDYASRNPMM--APGHACG------FDF 560 (710)
Q Consensus 492 ~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~---~~~~~~~lH~~~~~~~y~~~~~~~--~~~~~~~------~~~ 560 (710)
.+.|+||+||. ..+.|. |..+.++++++ ..++++|||+++....|....... +.-..+. ..|
T Consensus 105 d~~N~NR~fPg-----~~dgs~--t~ria~~l~r~L~~~aD~VlDlHsg~~~~~~~~~i~~~~~p~~~~~a~al~~~~~f 177 (331)
T COG3608 105 DDTNLNRAFPG-----RPDGSA--TERIADRLKRLLLPLADIVLDLHSGGEGLDYLPYILAHEIPDIASLAKALAIAAAF 177 (331)
T ss_pred CCCcccccCCC-----CCCCCH--HHHHHHHHHHhhhcccCEEEEccCCCCcccccceeccccCCcHHHHHHHHHHHHHh
Confidence 78899999996 222333 44455555444 479999999998866555221111 1111111 111
Q ss_pred cccccccceEE-eecCchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhh
Q psy11074 561 KDGITNGNYWY-KVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIE 621 (710)
Q Consensus 561 ~~g~~~~~~~y-~~~G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~ 621 (710)
... .+..+- ...-++.+=.....+++++|.|+|.+.-=..+.+. .....++.+++
T Consensus 178 ~~~--~~~~~~~~~~~g~l~~~~~~~gi~~iT~E~gg~g~v~~~~i~----~~~~gi~n~L~ 233 (331)
T COG3608 178 GSP--YSVIFDEADADGMLRTAAERAGIPVITVELGGAGDVDAESIE----IAAEGILNFLR 233 (331)
T ss_pred cCC--cceeecccCchhHHHHHHHHcCCcEEEeeecCccccCHHHHH----HHHHHHHHHHH
Confidence 110 000000 11122333344567899999999986443333443 33445555554
No 110
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.21 E-value=2.2e-11 Score=131.08 Aligned_cols=116 Identities=32% Similarity=0.464 Sum_probs=92.7
Q ss_pred cEEEEEcccccCCc-eEEEEEEeccCCCCCCCCCCcceEEEeeccccCccchHHHHHHHHHHHHHhcCCC-HHHHHHhhc
Q psy11074 380 LVRAETIGKSVQGR-NLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKD-DRITQLLNS 457 (710)
Q Consensus 380 ~~~~~~iG~S~eGr-~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~-~~~~~ll~~ 457 (710)
++.+..+|+|++|| ++++.+-. .+ +.++.++|.|++|++ |..++..++..|+..|... ..++.++++
T Consensus 120 ~~~~~~~g~sv~GR~~~~i~~~~---~~-----~~~~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~ 188 (374)
T COG2866 120 LVELELIGRSVEGRDDPLITFPE---SN-----PEHKTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDR 188 (374)
T ss_pred cceeeecCccccccccceeeecC---CC-----CccceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhcc
Confidence 67889999999999 54444444 22 358999999999997 7777777777777777554 889999999
Q ss_pred ccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCChHHHHHHHHHHHh
Q psy11074 458 TDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYS 525 (710)
Q Consensus 458 ~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~ 525 (710)
..+++||.+||||+++. | .|.|+.|+||||+|+. +.+.+.+.++.+...
T Consensus 189 ~~~~vvp~~NpDG~~~~---------~--lr~na~~~dLnr~~~~--------~~~~~~~~~~~~~~~ 237 (374)
T COG2866 189 ADLHVVPNVNPDGSDLG---------N--LRTNANGVDLNRNFIA--------PNEEEGKEVYRWNDA 237 (374)
T ss_pred ccEEEecccCCchhhhc---------c--cccccCccchhhhccC--------CCcccchHHHhhhhh
Confidence 99999999999999875 2 4999999999999976 556666666665544
No 111
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.21 E-value=2e-11 Score=118.93 Aligned_cols=93 Identities=25% Similarity=0.366 Sum_probs=73.7
Q ss_pred EEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC-----CCcCCccccccc
Q psy11074 103 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL-----NTKQKRMQDFNY 177 (710)
Q Consensus 103 v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~-----NR~~pg~~d~~y 177 (710)
|+++|++||+|++|.+++++|++.|+.. .|++.+|+|||++||||+++.+|.+. || ||.+
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~---------~l~~~~i~ivP~~NPdG~~~~~R~n~~gvDLNR------nFp~ 65 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL---------ILRGLSWYVIPVLNPDGLLRATRCNANGVDLNR------NFPT 65 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH---------hhcCCeEEEEeCcCccHHhhCcccCCCCcChhh------cCCc
Confidence 5899999999999999999999999875 27889999999999999999887764 87 8888
Q ss_pred cccceeEEEEeeccCCCCCCcchHHHHHHhhHHHHHHHHH
Q psy11074 178 VHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIEN 217 (710)
Q Consensus 178 ~~~~~~~~t~e~~~~~~p~~~~l~~~w~~n~~al~~~~~~ 217 (710)
.|...-..+ ...||+....+ +++.+++..++.+
T Consensus 66 ~~~~~~~~~----~~~~~G~~~~s---epEt~al~~~~~~ 98 (178)
T cd06904 66 KDWPPGASR----YRRYPGPKPGS---EPESRALMDLIER 98 (178)
T ss_pred cccccCCCc----ccccCCCCCCC---CHHHHHHHHHHHh
Confidence 775321111 13477776666 6778888877765
No 112
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=99.20 E-value=6.4e-10 Score=117.80 Aligned_cols=223 Identities=21% Similarity=0.184 Sum_probs=143.9
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEcc-cccCCc--eEEEEEEeccCCCCCCCCCCcceEEEeeccccCc-cchHHHHHH
Q psy11074 361 YNSTELDAFILKTVKSYPHLVRAETIG-KSVQGR--NLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDE-TVGYALMVF 436 (710)
Q Consensus 361 ~ty~e~~~~l~~l~~~~p~~~~~~~iG-~S~eGr--~i~~l~is~~~~~~~~~~~~kp~v~i~~~~Hg~E-~~g~~~~l~ 436 (710)
.+|.+-.+.+.+.++.-+-.++-+.+. +-.+|. .+.+..+++ + ..+..+++++|.||-| ..|+.+-..
T Consensus 3 ~sY~~AR~~Fl~aA~~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~----~----~a~~lLv~~SGtHGVEGf~GSaiQ~~ 74 (341)
T PF10994_consen 3 QSYAEARERFLAAAEAAGAKLESYPHPLRGPDGEDLATDVAWLGP----K----DASRLLVLTSGTHGVEGFAGSAIQIA 74 (341)
T ss_pred ccHHHHHHHHHHHHHHcCCcceeeeCCCCCCCCCcceeEEEEecC----C----CCCeEEEEEecCCcccccccHHHHHH
Confidence 378888888888888776544444432 234444 467777771 1 2355889999999999 558888888
Q ss_pred HHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCCCCCCCCCcc-cCC------
Q psy11074 437 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY-EAK------ 509 (710)
Q Consensus 437 l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlNRnf~~~~~~-~~~------ 509 (710)
+++.+.. ..+.+++.+.+|..+||-|+.+ ..|.|.++|||||||-..... ..+
T Consensus 75 ~L~~~~~--------~~~~~~~avllVHAlNPyGfa~------------~RR~nE~NVDLNRNfldf~~~~p~N~~Y~~l 134 (341)
T PF10994_consen 75 LLREDLA--------RSLPAGVAVLLVHALNPYGFAW------------LRRVNENNVDLNRNFLDFSQPLPANPGYEEL 134 (341)
T ss_pred HHHcccc--------cccCCCCeEEEEEccCccccce------------eeccCCcCcCcccccCcccCCCCCCccHHHH
Confidence 8888633 3456788999999999999974 369999999999999632111 000
Q ss_pred ----------------------------------------------------CCChHHHHHHHHHHHhC----CceEEEE
Q psy11074 510 ----------------------------------------------------KVYEPETQAIMNFIYSN----PFVLSGN 533 (710)
Q Consensus 510 ----------------------------------------------------~~sepEt~al~~~~~~~----~~~~~~~ 533 (710)
...+...+.|+.+++++ +-++.||
T Consensus 135 ~~~l~p~~~~~~~~~~~~~~l~~~~~~~G~~a~~~av~~GQY~~P~GlfYGG~~p~wS~~~L~~il~~~~~~~~~v~~iD 214 (341)
T PF10994_consen 135 HPLLNPSDWPPPADAAAFAALAKYIARHGFAAFKQAVSGGQYTHPDGLFYGGTEPEWSNRTLREILREHLAGAERVAWID 214 (341)
T ss_pred HHhhCCCCCCchhhHHHHHHHHHHHHHHhHHHHHHHHhCcCcCCCCccccCCCCccHHHHHHHHHHHHHhhcCcEEEEEE
Confidence 01456677777777776 6789999
Q ss_pred ecCCcccccccccCCCCCCCCcc----ccCCccccc----ccceEEeecCchhhhcccc---CCeEEEEEEecCCCCCCc
Q psy11074 534 LHGGAVARDYASRNPMMAPGHAC----GFDFKDGIT----NGNYWYKVTGGMQDFNYVH---SNCFEITMELSCCKYPKA 602 (710)
Q Consensus 534 lH~~~~~~~y~~~~~~~~~~~~~----~~~~~~g~~----~~~~~y~~~G~~~D~~y~~---~~~~~~T~Elg~~~~p~~ 602 (710)
+|+|-..+.+...-.....+... ...|....+ ....-|...|.+.++.+.. .....+++|.|. +|..
T Consensus 215 lHTGlGp~G~~~~i~~~~~~~~~~~~a~~~~g~~v~~~~~g~~~s~~~~G~~~~~~~~~~~~~~~~~~~~EfGT--~~~~ 292 (341)
T PF10994_consen 215 LHTGLGPYGHGELICDGPPDSAALERARRWWGPDVTSPYDGTSVSYDITGLLIDAWAELLPDAEYTPITLEFGT--YPGL 292 (341)
T ss_pred eCCCCCCCCceEEEecCCCChHHHHHHHHHhCcceeeccCCCCcccccCCcHHHHHHHHcCCCceeEEEEEeCC--CCHH
Confidence 99987644443321111111110 011111111 1334578899999998754 347788899864 6666
Q ss_pred hhhHHHHHHhh
Q psy11074 603 SDLKHYWAANK 613 (710)
Q Consensus 603 ~~l~~~w~~n~ 613 (710)
..+..+..+|.
T Consensus 293 ~v~~alr~enw 303 (341)
T PF10994_consen 293 EVLRALRAENW 303 (341)
T ss_pred HHHHHHHHHHH
Confidence 66655554444
No 113
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=99.18 E-value=5.7e-11 Score=100.37 Aligned_cols=76 Identities=33% Similarity=0.539 Sum_probs=61.0
Q ss_pred eeEEEEcCCCCCCCCcEEEEe----ceeeceeeCCCceEee-eecCceeEEEEEeCCcccccccceecCCCCceEEEEEe
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR----WNDKAVTVTNRGEYWR-LLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFML 296 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~----g~~~~~~t~~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L 296 (710)
|+|.|+|++|+||++|+|.+. +....+.||.+|.|.. .++||.|.|.+++.||.+.....|.|..++...++|+|
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~L 81 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDITL 81 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEEE
Confidence 799999999999999999998 4445589999999954 59999999999999999998447999999988999998
Q ss_pred e
Q psy11074 297 G 297 (710)
Q Consensus 297 ~ 297 (710)
+
T Consensus 82 ~ 82 (82)
T PF13620_consen 82 E 82 (82)
T ss_dssp E
T ss_pred C
Confidence 5
No 114
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=99.12 E-value=3.3e-10 Score=97.14 Aligned_cols=77 Identities=29% Similarity=0.478 Sum_probs=69.2
Q ss_pred eeEEEEcCC-CCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEeecc
Q psy11074 222 VYGIVTDTY-GNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKK 299 (710)
Q Consensus 222 i~G~V~d~~-g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~~ 299 (710)
|+|+|+|+. |+||++|+|.+.+.+..+.||.+|.|...+++|.|+|.+++.||++.+ ..+.+..++...+++.|++.
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~~~-~~i~~~~~~~~~~~i~L~~~ 79 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIKLPEGDYTLKISYIGYETKT-ITISVNSNKNTNLNIYLEPK 79 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEEEcCCCeEEEEEEeCEEEEE-EEEEecCCCEEEEEEEEeeC
Confidence 799999995 999999999999999999999999997669999999999999999998 67777666656789999873
No 115
>PRK02259 aspartoacylase; Provisional
Probab=99.04 E-value=1.1e-09 Score=114.79 Aligned_cols=100 Identities=21% Similarity=0.148 Sum_probs=70.9
Q ss_pred ceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcc
Q psy11074 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGV 494 (710)
Q Consensus 415 p~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~Gv 494 (710)
+.|+|+||+||||..|.+++..+++.+.... .....+++|++||.|++.. .|.. ..
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~~----------~~g~~i~~~i~Np~A~~~~------------~Ry~--~~ 58 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPNLIN----------RKGLEVQTVIGNPEAIEAG------------RRYI--DR 58 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhcccccc----------cCccEEEEEeeCHHHHHhC------------CCCC--cc
Confidence 6799999999999999999998888864411 1335788899999998742 3432 37
Q ss_pred cCCCCCCCCCcccCCCCChHHHHHHHHHHHhC------CceEEEEecCCcc
Q psy11074 495 DLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN------PFVLSGNLHGGAV 539 (710)
Q Consensus 495 DlNRnf~~~~~~~~~~~sepEt~al~~~~~~~------~~~~~~~lH~~~~ 539 (710)
||||.||....+ ....+..|.+.-..+.+.+ +.++.+|||+++.
T Consensus 59 DLNR~Fpg~~~~-~~~~~~~e~~~A~~l~~~~~~~~~~~~D~~iDLHttts 108 (288)
T PRK02259 59 DLNRSFRLDLLQ-NPDLSGYEQLRAKELVQQLGPKGNSPCDFIIDLHSTTA 108 (288)
T ss_pred cCCCCCCCcccc-CCCCCCHHHHHHHHHHHHHhhccCccCcEEEECCCCCC
Confidence 999999985443 1222345555444444443 7899999999754
No 116
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.04 E-value=9.7e-10 Score=116.60 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=70.7
Q ss_pred ceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcc
Q psy11074 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGV 494 (710)
Q Consensus 415 p~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~Gv 494 (710)
|.++|+||+||||..|.+++..+++.+... . +... .+++++||-|+.. ..|....|.
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~~--------~-~~~~--~~l~i~Np~A~~~------------~~R~~~d~~ 91 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEAR--------P-LPRS--LLLFIGNVAAALA------------GVRRLDGQP 91 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCChh--------h-cCCc--EEEEEeCHHHHHh------------CcccCCCCC
Confidence 899999999999999999999999887541 1 2223 5566799999964 245556688
Q ss_pred cCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCCcc
Q psy11074 495 DLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAV 539 (710)
Q Consensus 495 DlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~ 539 (710)
||||.||.... ...+-.++.|.+.+.+...++++|||+++.
T Consensus 92 DLNR~Fpg~~~----s~e~r~A~~l~~~l~~~~~d~~IDLHstt~ 132 (327)
T cd06256 92 DYNRCWPGPYD----DPEGRLAEEVLELLADERPEASIDIHNNTG 132 (327)
T ss_pred CccCCCCCCCC----CHHHHHHHHHHHHHHhcCCcEEEECCCCCC
Confidence 99999997322 223344455555555556789999998643
No 117
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.01 E-value=1.7e-09 Score=112.41 Aligned_cols=100 Identities=21% Similarity=0.143 Sum_probs=68.1
Q ss_pred ceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcc
Q psy11074 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGV 494 (710)
Q Consensus 415 p~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~Gv 494 (710)
+.|+|+||+||||..|.+++..+++.+... .......++|+.||.+++.. .|.. ..
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~----------~~~~~~v~~~i~Np~A~~~~------------~Ry~--d~ 56 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI----------QRPSLEVHPVIANPRAVEAC------------RRYI--DT 56 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc----------ccCCeEEEEEecCHHHHHhC------------CccC--CC
Confidence 469999999999999999999888876541 12234556667899998642 3433 48
Q ss_pred cCCCCCCCCCcccCCCCChHHHHHHHHHHHhC------CceEEEEecCCcc
Q psy11074 495 DLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN------PFVLSGNLHGGAV 539 (710)
Q Consensus 495 DlNRnf~~~~~~~~~~~sepEt~al~~~~~~~------~~~~~~~lH~~~~ 539 (710)
||||.||...... ...+.+|.+.-..+.+.+ +.++++|||+++.
T Consensus 57 DLNR~Fpg~~~~~-~~~~~~e~~~A~~l~~~l~~~~~~~~D~~iDLHstts 106 (282)
T cd06909 57 DLNRCFTLENLSN-SELLPYEVKRAKELNQKLGPKGNSPCDFVIDLHNTTS 106 (282)
T ss_pred CCCCCCCCCccCC-CCCCCHHHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 9999999865541 222344544444443332 4799999999743
No 118
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=98.98 E-value=6.5e-09 Score=110.74 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=70.0
Q ss_pred CcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCC
Q psy11074 413 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAH 492 (710)
Q Consensus 413 ~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~ 492 (710)
..|.++|+||+||||..|.+++..+++.+.... +......++|+.||.++... .|..
T Consensus 41 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~~---------l~~~~~v~~~~~Np~A~~~~------------~R~~-- 97 (322)
T cd03855 41 ATKAIVISAGVHGNETAPIEILNQLIKDLLAGE---------LPLAHRLLFIFGNPPAMRAG------------ERFV-- 97 (322)
T ss_pred CCCeEEEEccccCCchhHHHHHHHHHHhhhhcc---------ccCCeEEEEEeeCHHHHHhC------------cccC--
Confidence 458999999999999999999999999997621 22233467779999998642 2322
Q ss_pred cccCCCCCCCCCcccCCCCChHHHH-------HHHHHHHhC---CceEEEEecCC
Q psy11074 493 GVDLNRNFPDQFEYEAKKVYEPETQ-------AIMNFIYSN---PFVLSGNLHGG 537 (710)
Q Consensus 493 GvDlNRnf~~~~~~~~~~~sepEt~-------al~~~~~~~---~~~~~~~lH~~ 537 (710)
..||||.||..+.. .....|.+ .+..++... ..++.+|||++
T Consensus 98 d~DLNR~FpG~~~~---~~~~~E~~rA~~L~~~~~~~~~~~~~~~~d~~iDLHta 149 (322)
T cd03855 98 DENLNRLFSGRHQK---DEPGPERARAAELEQAVADFFAAGPSGAERWHYDLHTA 149 (322)
T ss_pred CCCccCCCCCCccc---CCCChHHHHHHHHHHHHHHHHhhcccccCcEEEEccCC
Confidence 25999999985542 12234443 233355554 68999999996
No 119
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=98.96 E-value=3.7e-09 Score=112.59 Aligned_cols=99 Identities=22% Similarity=0.217 Sum_probs=68.4
Q ss_pred CcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCC
Q psy11074 413 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAH 492 (710)
Q Consensus 413 ~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~ 492 (710)
..|.++|+||+||||..|.+++..+++.+.... +......++|++||.++... .|..
T Consensus 46 ~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~~---------~~~~~~v~~i~~Np~A~~~~------------~R~v-- 102 (329)
T PRK05324 46 STKALVLSAGIHGNETAPIELLDQLVRDLLAGE---------LPLRARLLVILGNPPAMRAG------------KRYL-- 102 (329)
T ss_pred CCCeEEEECCcccCcHHHHHHHHHHHHhhhccc---------cccCceEEEEecCHHHHHhC------------cccC--
Confidence 468999999999999999999999999987521 11122356669999998642 3433
Q ss_pred cccCCCCCCCCCcccCCCCChHHHH---HHHHHHHh----C--CceEEEEecCC
Q psy11074 493 GVDLNRNFPDQFEYEAKKVYEPETQ---AIMNFIYS----N--PFVLSGNLHGG 537 (710)
Q Consensus 493 GvDlNRnf~~~~~~~~~~~sepEt~---al~~~~~~----~--~~~~~~~lH~~ 537 (710)
..||||.||..+.+.. ..+|.+ .|.+.+.. . ..++.+|||++
T Consensus 103 d~DLNR~FpG~~~~~~---~~~E~~rA~~L~~~i~~~~~~~~~~~D~~iDLHta 153 (329)
T PRK05324 103 DEDLNRLFGGRHQQFP---GSDEARRAAELEQAVEDFFAAGAERVRWHYDLHTA 153 (329)
T ss_pred CCCcccCCCCCcCCCC---CcHHHHHHHHHHHHHHHHhcccCccceEEEECCCC
Confidence 3699999998766511 112542 33332222 1 47899999995
No 120
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.94 E-value=3.4e-09 Score=110.47 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=66.6
Q ss_pred ceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCC---
Q psy11074 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA--- 491 (710)
Q Consensus 415 p~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~--- 491 (710)
|.++|+||+||||..|.+++..+++.-. . .+. .++.++ ++||-++... .|.+.
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~~~-----~-----~l~-G~li~~-~~N~~A~~~~------------~~~~p~~~ 56 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLREGL-----R-----PRR-GRLTLA-FANVAAYARF------------DPNNPTAS 56 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhCcc-----c-----ccC-CCEEEE-EECHHHHHhc------------ccCCCccc
Confidence 7899999999999999999999987310 1 133 356666 8999998642 22222
Q ss_pred --CcccCCCCCCCCCcccCCCCChHHHHHHHHHHHhC-CceEEEEecCCcc
Q psy11074 492 --HGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSN-PFVLSGNLHGGAV 539 (710)
Q Consensus 492 --~GvDlNRnf~~~~~~~~~~~sepEt~al~~~~~~~-~~~~~~~lH~~~~ 539 (710)
.+.||||.||..+..++. ...|.+.-..+..-. ..++.+|||+++.
T Consensus 57 R~~~~dLNR~Fpg~~~~g~~--~~~e~~~A~~l~~~i~~aD~~iDLHt~~~ 105 (272)
T cd06910 57 RFVDEDMNRVWSPDVLDGPR--DSIELRRARELRPVIDTADYLLDLHSMQW 105 (272)
T ss_pred ccCCCCcCCCCCCcccCCCc--ccHHHHHHHHHHHHHhhCCEEEECCCCCC
Confidence 257999999986543221 134555433332212 5789999999876
No 121
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=98.90 E-value=9.5e-09 Score=109.31 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=66.8
Q ss_pred CcceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCC
Q psy11074 413 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAH 492 (710)
Q Consensus 413 ~kp~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~ 492 (710)
.-|.++|+||+||||..|.+++..+++.+...- +.-..++ +++++||.|+... .|..
T Consensus 40 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~~--------~~~~~~l-~~i~~Np~A~~~~------------~R~~-- 96 (319)
T TIGR03242 40 PQKSLVISAGIHGNETAPIEILEQLLGDIAAGK--------LPLRVRL-LVILGNPPAMRTG------------KRYL-- 96 (319)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhhhhhcc--------ccCCceE-EEEEcCHHHHHhC------------cccC--
Confidence 358999999999999999999999999986521 1122345 4447999999642 3433
Q ss_pred cccCCCCCCCCCcccCCCCChHHHH---H----HHHHHHhC---CceEEEEecCC
Q psy11074 493 GVDLNRNFPDQFEYEAKKVYEPETQ---A----IMNFIYSN---PFVLSGNLHGG 537 (710)
Q Consensus 493 GvDlNRnf~~~~~~~~~~~sepEt~---a----l~~~~~~~---~~~~~~~lH~~ 537 (710)
..||||.||..+... ....|.+ . +..++... ..++.+|||++
T Consensus 97 ~~DLNR~FpG~~~~~---~~~~E~~rA~~l~~~~~~~~~~~~~~~~D~~IDLHt~ 148 (319)
T TIGR03242 97 HDDLNRMFGGRYQQL---APSFETCRAAELEQCVEDFFSQGGRSVARWHYDLHTA 148 (319)
T ss_pred CCCccCCCCCccccc---cCchHHHHHHHHHHHHHHHhccccCccceEEEECCCC
Confidence 369999999855321 1123432 2 22355443 36999999986
No 122
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=98.64 E-value=4.4e-08 Score=105.76 Aligned_cols=86 Identities=27% Similarity=0.418 Sum_probs=73.7
Q ss_pred cEEEEeeeeecCCc-eEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCC-hHHHHhhcc
Q psy11074 66 LVRAETIGKSVQGR-NLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKD-DRITQLLNS 143 (710)
Q Consensus 66 ~~~~~~iG~S~eGr-~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d-~~~~~ll~~ 143 (710)
++++..+|+|++|| ++++.+-..+ ..++.+++.|++|+| |..++.+++..|+..|... ..++.++++
T Consensus 120 ~~~~~~~g~sv~GR~~~~i~~~~~~--------~~~~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~ 188 (374)
T COG2866 120 LVELELIGRSVEGRDDPLITFPESN--------PEHKTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDR 188 (374)
T ss_pred cceeeecCccccccccceeeecCCC--------CccceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhcc
Confidence 67889999999999 6666665554 458999999999998 7778888888888888755 888999999
Q ss_pred eEEEEEeccCchhhhhhhc
Q psy11074 144 TDIYIVPSINPDGFAAAKE 162 (710)
Q Consensus 144 ~~i~ivP~~NPDG~~~~~~ 162 (710)
++++++|.+||||+++.+.
T Consensus 189 ~~~~vvp~~NpDG~~~~~l 207 (374)
T COG2866 189 ADLHVVPNVNPDGSDLGNL 207 (374)
T ss_pred ccEEEecccCCchhhhccc
Confidence 9999999999999999943
No 123
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=98.41 E-value=1.4e-06 Score=89.97 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEee---eeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCC-cchHHHHHH
Q psy11074 47 YNSTELDAFILKTVKSYPHLVRAETI---GKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDE-TVGYALMVF 122 (710)
Q Consensus 47 ~~~~ei~~~l~~l~~~~p~~~~~~~i---G~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E-~~~~~~~~~ 122 (710)
.+|+|-.+-+.+-|++..-.++-+.+ |..-+--+|.++.|+.. ...|.+++++|+||.| .+|+.+++.
T Consensus 3 ~sY~eAR~kFl~aA~~aga~~~~~~~~~~gp~g~~l~i~v~~~g~~--------~~~~~l~i~sGvHG~Eg~~Gs~~~~~ 74 (283)
T cd06233 3 QSYAEAREKFLAAAKAAGAALESYVHPLLGPDGEALAIDVARLGPA--------DAKRLLVITSGTHGVEGFCGSAIQLA 74 (283)
T ss_pred ccHHHHHHHHHHHHHHcCccceeeeccCCCCCCceeeeeEEEEcCC--------CCCcEEEEEecccCCcccchHHHHHH
Confidence 37888888887777765543444333 33223336888888875 3356999999999999 799999999
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL 165 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~ 165 (710)
+++.+... .+..++.|.+||++||.|+...+|.+.
T Consensus 75 ll~~~~~~--------~~~~~~~vi~vh~vNP~Gf~~~~R~ne 109 (283)
T cd06233 75 LLRELLPR--------SLPAGVAVLLVHALNPYGFAHLRRVNE 109 (283)
T ss_pred HHHhcchh--------hccCCceEEEEeCcCHHHHhhcccCCC
Confidence 99987532 456688999999999999999888665
No 124
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=98.38 E-value=9.3e-07 Score=95.57 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=58.2
Q ss_pred eeeecCC--ceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEE
Q psy11074 72 IGKSVQG--RNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIV 149 (710)
Q Consensus 72 iG~S~eG--r~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~iv 149 (710)
++++.-| +.|.++++... ...|+++++|++||+|+.|..++.+|++.|......+ .| +-+|+++
T Consensus 5 ~~~~~~g~~~~ipv~~~~g~--------~~gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~~~-----~l-~G~v~iv 70 (359)
T cd06250 5 LPSPAPGTERELTVFRFGGA--------GAGPKVYIQASLHADELPGMLVLHHLIELLKKLEAEG-----RI-LGEITLV 70 (359)
T ss_pred cccCCCCCeEEEEEEEEeCC--------CCCCEEEEEeccccCchHHHHHHHHHHHHHhhhcccc-----cc-CceEEEE
Confidence 3444444 67888888754 1269999999999999999999999999998642111 23 4479999
Q ss_pred eccCchhhhhhh
Q psy11074 150 PSINPDGFAAAK 161 (710)
Q Consensus 150 P~~NPDG~~~~~ 161 (710)
|++||+|++..+
T Consensus 71 P~~Np~g~~~~~ 82 (359)
T cd06250 71 PVANPIGLNQRL 82 (359)
T ss_pred eCcChHHHHhhc
Confidence 999999998743
No 125
>KOG3641|consensus
Probab=98.36 E-value=6.3e-07 Score=97.04 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=95.0
Q ss_pred CCCCccCCHHHHHHHHHHHHHHCC-C-cEEEEeeeeecCCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHH
Q psy11074 41 IDLQRYYNSTELDAFILKTVKSYP-H-LVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYA 118 (710)
Q Consensus 41 ~~~~~y~~~~ei~~~l~~l~~~~p-~-~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~ 118 (710)
+.|.--+||..|.-+|+.|+...+ . ..+...++.|..||++-++.|... ....+|.|++.|.+|++|.-+..
T Consensus 374 faYhypyTy~~l~~hLn~les~~~~~~yfr~dVl~~tl~g~~~~l~tI~~a------e~~~~~~IfLSaRVHpgeTnsSw 447 (650)
T KOG3641|consen 374 FAYHYPYTYSQLQCHLNGLESPKNPAFYFRYDVLLFTLVGRAMALATIDMA------ECAPRPVIFLSARVHPGETNSSW 447 (650)
T ss_pred EeeccCccHHHHHhhhhcccCCCCcCcccchheeeeeecCCccceEEeeHh------hcCCcceEEEecccCCCCCcHHH
Confidence 445566799999999999987544 3 578888999999999999999943 23469999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh
Q psy11074 119 LMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA 160 (710)
Q Consensus 119 ~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~ 160 (710)
++-.+++.|+.+ ++....|.+...+-|+||+||||.-..
T Consensus 448 vmkGilefl~s~---~p~aq~LRe~~vFKI~PMLNPDGV~~G 486 (650)
T KOG3641|consen 448 VMKGILEFLVSN---SPLAQGLRESYVFKIVPMLNPDGVIVG 486 (650)
T ss_pred HHHHHHHHhhcC---CcHHHhhhhheeEecccccCCCceecc
Confidence 999999999875 777778999999999999999997654
No 126
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=98.30 E-value=2.3e-06 Score=85.91 Aligned_cols=180 Identities=20% Similarity=0.216 Sum_probs=100.8
Q ss_pred eEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCccc
Q psy11074 416 MFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVD 495 (710)
Q Consensus 416 ~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvD 495 (710)
.+.|+||+||||..+.|++-.++..+...+.- + ..+.. +-+-||-..+. ++. ..--|
T Consensus 45 ~lvIsaGiHGNEtapvEll~kl~~~~~ag~~p-------~-a~r~L-~ilgNP~Ai~~-------------gkR-YieqD 101 (324)
T COG2988 45 SLVISAGIHGNETAPVELLDKLQQKISAGQLP-------L-AWRCL-VILGNPPAIAA-------------GKR-YIEQD 101 (324)
T ss_pred ceEEEecccCCccCcHHHHHHHHhhhhhcccC-------c-ceeEE-EEecCcHHHHh-------------chH-HHhhh
Confidence 69999999999999999999999999885421 0 11222 23679988653 111 13459
Q ss_pred CCCCCCCCCcccC--CCCChHHH-HHHHHHHHhC--CceEEEEecCCcccccccccCCCC---CCCC------ccccCCc
Q psy11074 496 LNRNFPDQFEYEA--KKVYEPET-QAIMNFIYSN--PFVLSGNLHGGAVARDYASRNPMM---APGH------ACGFDFK 561 (710)
Q Consensus 496 lNRnf~~~~~~~~--~~~sepEt-~al~~~~~~~--~~~~~~~lH~~~~~~~y~~~~~~~---~~~~------~~~~~~~ 561 (710)
|||-|...|...+ ...+.-|- ++++.|++.- ..++.+|+|+.-.. ..++.. +... -|.-.-.
T Consensus 102 lNR~F~gr~q~~~~ne~~ra~eler~~q~ff~~~~~~vr~h~DLHtairg----s~h~~f~~~P~~~~~~~~~l~a~L~~ 177 (324)
T COG2988 102 LNRMFGGRPQSFSENETLRAYELERALQDFFQQGKESVRWHLDLHTAIRG----SGHPQFGVLPQPDRPWSLKLLAWLSA 177 (324)
T ss_pred HHHHhCCCcccCCCCchhhhHHHHHHHHHHHhcCCCcceEEEEhhhhhhc----cCCcceeeCCCCCchhHHHHHHHHHh
Confidence 9999999888722 11222222 4555555554 68999999985320 111100 0000 0100001
Q ss_pred ccccccceEEeec-CchhhhccccCCeEEEEEEecCCCCCCchhhHHHHHHhhhhhhhhhhccc
Q psy11074 562 DGITNGNYWYKVT-GGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVH 624 (710)
Q Consensus 562 ~g~~~~~~~y~~~-G~~~D~~y~~~~~~~~T~Elg~~~~p~~~~l~~~w~~n~~~ll~~i~q~~ 624 (710)
.+.. ....+..+ |++.-|.+.+.+..++|+|+|...---+.++.+ .+.-..+++.++....
T Consensus 178 a~~e-a~vl~~~Pg~tf~~~ss~~l~ala~TLELGka~pfgen~l~~-~~~~~~~i~~lls~~~ 239 (324)
T COG2988 178 AGLE-ALVLHTSPGGTFSHFSSEHLGALACTLELGKALPFGENLLRQ-FERTAQAILALLSGSE 239 (324)
T ss_pred CCcc-eEEEEcCCCCCchhhchhhhhheeeEEeecccCCCChHHHHH-HHHHHHHHHHHHhccc
Confidence 1111 12334444 445555566789999999999643222334433 2333445555555443
No 127
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.94 E-value=2.1e-05 Score=83.00 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhh
Q psy11074 80 NLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAA 159 (710)
Q Consensus 80 ~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~ 159 (710)
.|.+..+... ...|.++++|++||+|..|..++..|++.|... .+ +-.+.++|++||.|+..
T Consensus 12 ~~pv~~~~g~--------~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~---------~~-~g~~~~vp~~N~~a~~~ 73 (293)
T cd06255 12 ALPVTILRGA--------EPGPTLWLHAQVHGNEYNGTQAIVDLYRSLDPA---------AL-KGRLVALPTANPTALDA 73 (293)
T ss_pred ceeEEEEeCC--------CCCCEEEEEcccCCCcHHHHHHHHHHHHhCCHh---------hc-CCeEEEEeCcCHHHHHh
Confidence 3666666654 235899999999999999999999999987421 23 34667899999999999
Q ss_pred hhcCC
Q psy11074 160 AKEGN 164 (710)
Q Consensus 160 ~~~~~ 164 (710)
..|.+
T Consensus 74 ~~R~~ 78 (293)
T cd06255 74 RTRMS 78 (293)
T ss_pred hcccC
Confidence 87763
No 128
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.93 E-value=1.5e-05 Score=83.82 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=45.1
Q ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC
Q psy11074 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164 (710)
Q Consensus 100 kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~ 164 (710)
.|.++++|++||||+.|..++..|++.|... . -+-.++++|++||.|++...|..
T Consensus 20 gp~v~i~~giHGdE~~G~~~~~~l~~~l~~~---------~-~~g~v~~vp~~Np~a~~~~~R~~ 74 (287)
T cd06251 20 GPTLLLTAAIHGDELNGVEIIRRLLRQLDPK---------T-LRGTVIAVPVVNVFGFLNQSRYL 74 (287)
T ss_pred CCEEEEEcCccCCchhHHHHHHHHHhcCCcc---------c-CceEEEEEeCCCHHHHHhccccC
Confidence 5899999999999999999999998876321 1 23467899999999999876653
No 129
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.85 E-value=2.1e-05 Score=81.33 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=46.5
Q ss_pred EEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC---CC
Q psy11074 103 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL---NT 167 (710)
Q Consensus 103 v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~---NR 167 (710)
|+++|++||||..|..++..|++.+.... .+ +..+.++|++||+|++...|... ||
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~--------~l-~g~v~~vp~~N~~g~~~~~R~~~~DLNR 59 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ--------AL-RGPVKLVPAANPLALEAGQRYLDRDLNR 59 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc--------cc-ccEEEEEeCcCHHHHHhCCCCCCcCCCC
Confidence 57999999999999999999999986531 23 56789999999999998776433 88
No 130
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.81 E-value=3.2e-05 Score=81.52 Aligned_cols=65 Identities=23% Similarity=0.187 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhh
Q psy11074 80 NLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAA 159 (710)
Q Consensus 80 ~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~ 159 (710)
.|.+..|... ...|.++++|++||||+.|..++..|++.|-.. .-+-.++++|++||.|++.
T Consensus 5 ~~pv~~~~g~--------~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~----------~~~g~v~~vp~~N~~a~~~ 66 (288)
T cd06254 5 AIPVTLINGV--------NPGPTLAITAGVHGGEYPGIQALQKLAREIDPA----------KLSGTLIIVHVLNLSGFYA 66 (288)
T ss_pred cccEEEEeCC--------CCCCEEEEEecccCCchhHHHHHHHHHHhCCcc----------cCeEEEEEEeCcCHHHHHh
Confidence 4555566544 236999999999999999999999999886321 1256789999999999987
Q ss_pred hhc
Q psy11074 160 AKE 162 (710)
Q Consensus 160 ~~~ 162 (710)
..+
T Consensus 67 ~~r 69 (288)
T cd06254 67 RTP 69 (288)
T ss_pred cCc
Confidence 554
No 131
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.77 E-value=5.1e-05 Score=80.20 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=48.8
Q ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcC
Q psy11074 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163 (710)
Q Consensus 100 kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~ 163 (710)
.|+++++|++||+|..|..++.+|+++|....... .+.-+-.++++|++||-|+....|.
T Consensus 19 gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~----~~~l~g~v~~vP~~N~~a~~~~~R~ 78 (298)
T cd06253 19 EKRICIVGGIHGDELQGLYICSLLIRFLKELEKRG----PLKLNGIVDVIPSVNPLGLNLGTRF 78 (298)
T ss_pred CcEEEEEccCccchHHHHHHHHHHHHHHhhhhccc----ccccCceEEEEeCcCHHHHHHhhCc
Confidence 78999999999999999999999999997641111 1223788999999999998877654
No 132
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.76 E-value=9.6e-05 Score=67.07 Aligned_cols=66 Identities=29% Similarity=0.462 Sum_probs=55.8
Q ss_pred eeEEEEcCCCCCCCCcEEEEeceee----------ceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCC
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWNDK----------AVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDT 287 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~~~----------~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~ 287 (710)
|+|..+|..|+|+++++|+++-... ...|++.|.|...+.||.|.+.+...|+.+.-+-.|.|..+
T Consensus 5 ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~d 80 (134)
T PF08400_consen 5 ISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYED 80 (134)
T ss_pred EEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecC
Confidence 8999999999999999999975543 36789999999999999999999999997765455666543
No 133
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.65 E-value=9.2e-05 Score=78.98 Aligned_cols=55 Identities=29% Similarity=0.294 Sum_probs=46.1
Q ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC
Q psy11074 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164 (710)
Q Consensus 100 kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~ 164 (710)
.|+++++|++||+|+.|..++..|++.|... - -+-.|.+||++||-|+....+..
T Consensus 47 gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~---------~-l~G~v~~vP~~N~~g~~~~~r~~ 101 (325)
T TIGR02994 47 GPTALLTGGNHGDEYEGPIALFELARTLDAE---------D-VSGRIIIVPAMNYPAFRAGTRTS 101 (325)
T ss_pred CCEEEEEeccCCCchHHHHHHHHHHhhCChh---------h-CcEEEEEEcCCCHHHHHhhCCCC
Confidence 5899999999999999999999999988322 1 25569999999999998876643
No 134
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.59 E-value=0.00035 Score=63.51 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc----------cceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCC
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND----------KAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~----------~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
.|+|..+|..|+|+++++|+++-.. -...|+.+|.|...+.||.|.+.+...|+.+...-+|.|...
T Consensus 4 ~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~d 80 (134)
T PF08400_consen 4 KISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYED 80 (134)
T ss_pred EEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecC
Confidence 4999999999999999999997643 234789999997789999999999999998888555777654
No 135
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.51 E-value=0.00018 Score=76.74 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=53.1
Q ss_pred ceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhh
Q psy11074 79 RNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFA 158 (710)
Q Consensus 79 r~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~ 158 (710)
-.|.+..|... . -|+|+++||+||+|..|..++.+|+++|... .-+-.+.++|++||-|+.
T Consensus 22 ~~iPv~v~~g~--------~-gp~v~I~aGiHGdE~~G~~~~~~L~~~l~~~----------~l~G~vi~vP~~Np~a~~ 82 (316)
T cd06252 22 VMIPITVIKNG--------D-GPTVLLTGGNHGDEYEGQIALLRLARRLDPE----------EVRGRVIILPALNFPAVQ 82 (316)
T ss_pred eEeeEEEEeCC--------C-CCEEEEEccCCCCchHHHHHHHHHHHhCChh----------hCeEEEEEEeCCCHHHHH
Confidence 46666666554 2 5899999999999999999999999987432 125688999999999998
Q ss_pred hhhcCC
Q psy11074 159 AAKEGN 164 (710)
Q Consensus 159 ~~~~~~ 164 (710)
...|..
T Consensus 83 ~~~R~~ 88 (316)
T cd06252 83 AGTRTS 88 (316)
T ss_pred hccccC
Confidence 876653
No 136
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=97.43 E-value=0.00022 Score=75.49 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=45.8
Q ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC
Q psy11074 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164 (710)
Q Consensus 100 kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~ 164 (710)
-|.++++|++||||+.|..++..|+++|... + -+-.++++|+.||.|+....|..
T Consensus 2 Gp~l~i~agvHGnE~~G~~a~~~L~~~l~~~--------~--~~G~~~~vp~~N~~a~~~~~R~~ 56 (292)
T PF04952_consen 2 GPTLLITAGVHGNEYNGIEALQRLLRELDPA--------D--LSGTVIIVPVANPPAFRQGTRFV 56 (292)
T ss_dssp S-EEEEEE-SSTTBCHHHHHHHHHHHHHHGG--------G--CTCEEEEEEESSHHHHHHTSSSS
T ss_pred CCEEEEEcCcccChHHHHHHHHHHHhcchhc--------c--cCCceEEEEEeCHHHHHhccccC
Confidence 4899999999999999999999999998654 1 46778999999999999887643
No 137
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=97.38 E-value=0.00072 Score=55.17 Aligned_cols=61 Identities=26% Similarity=0.304 Sum_probs=50.3
Q ss_pred CCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEEEEecC
Q psy11074 639 LPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKK 704 (710)
Q Consensus 639 i~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~~ 704 (710)
.++|.|.|.|...+.+ .. -+..+++|.|+|++++.||++.+.+ |.|..++...+++.|++.
T Consensus 10 p~gA~V~vdg~~~G~t-p~---~~~~l~~G~~~v~v~~~Gy~~~~~~-v~v~~~~~~~v~~~L~~~ 70 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTT-PL---TLKDLPPGEHTVTVEKPGYEPYTKT-VTVKPGETTTVNVTLEPQ 70 (71)
T ss_pred CCCCEEEECCEEeccC-cc---eeeecCCccEEEEEEECCCeeEEEE-EEECCCCEEEEEEEEEEC
Confidence 3689999988766621 11 1445899999999999999999999 999999999999999864
No 138
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=97.22 E-value=0.00086 Score=54.72 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=48.8
Q ss_pred CCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEEEeec
Q psy11074 235 PSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGK 298 (710)
Q Consensus 235 ~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~L~~ 298 (710)
++|.|+|.|...+ .|.. -...+++|.|+|++++.||.+.+ +.|.|..++...++++|++
T Consensus 11 ~gA~V~vdg~~~G-~tp~---~~~~l~~G~~~v~v~~~Gy~~~~-~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 11 SGAEVYVDGKYIG-TTPL---TLKDLPPGEHTVTVEKPGYEPYT-KTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred CCCEEEECCEEec-cCcc---eeeecCCccEEEEEEECCCeeEE-EEEEECCCCEEEEEEEEEE
Confidence 5799999887776 2221 12248999999999999999999 8999999999999999986
No 139
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=96.98 E-value=0.0033 Score=59.91 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=56.4
Q ss_pred ceEEEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcc
Q psy11074 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGV 494 (710)
Q Consensus 415 p~v~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~Gv 494 (710)
|.=+++||+||+||-.+. .+++.|..+ .+.+..++|+| +..+|--++
T Consensus 7 p~rLFvgGlHG~Egk~t~---~iL~~l~~~---------~~~~G~l~i~p-lv~~~kYiS-------------------- 53 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTS---PILKRLKPN---------DFNNGNLIIIP-LVENSKYIS-------------------- 53 (193)
T ss_pred ceEEEEeeccCcchhhHH---HHHHHhCcc---------cccCceEEEEe-CCCCCCcee--------------------
Confidence 899999999999996444 333444321 13336899999 444453322
Q ss_pred cCCCCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCCcc
Q psy11074 495 DLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAV 539 (710)
Q Consensus 495 DlNRnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~ 539 (710)
=|+..|- ..++-+.|.+++.+++|.+++-+|+++.
T Consensus 54 TL~~~YY----------~s~~Gk~il~lIe~y~P~~Y~ElHsY~~ 88 (193)
T PF09892_consen 54 TLDPEYY----------KSEMGKKILDLIEKYKPEFYFELHSYSK 88 (193)
T ss_pred ecCHHHh----------cchhhhHHHHHHHHhCCceEEEEeecCH
Confidence 1333331 2356789999999999999999999875
No 140
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=96.93 E-value=0.0017 Score=69.52 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=46.3
Q ss_pred CCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcC---CCCC
Q psy11074 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG---NLNT 167 (710)
Q Consensus 98 ~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~---~~NR 167 (710)
...|.|+++|++||||..|.+++..|++.|... .+.-+.. .++|+.||.++....|. |-||
T Consensus 45 ~~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~--------~~~~~~~-v~~i~~Np~A~~~~~R~vd~DLNR 108 (329)
T PRK05324 45 PSTKALVLSAGIHGNETAPIELLDQLVRDLLAG--------ELPLRAR-LLVILGNPPAMRAGKRYLDEDLNR 108 (329)
T ss_pred CCCCeEEEECCcccCcHHHHHHHHHHHHhhhcc--------ccccCce-EEEEecCHHHHHhCcccCCCCccc
Confidence 347899999999999999999999999988753 1111223 45568999999987663 3388
No 141
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=96.92 E-value=0.0021 Score=68.69 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcC---CCCC
Q psy11074 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG---NLNT 167 (710)
Q Consensus 98 ~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~---~~NR 167 (710)
...|.|+++|++||||..|.+++..+++.|... . +.-....++|+.||.++....|. |-||
T Consensus 40 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~-l~~~~~v~~~~~Np~A~~~~~R~~d~DLNR 103 (322)
T cd03855 40 PATKAIVISAGVHGNETAPIEILNQLIKDLLAG--------E-LPLAHRLLFIFGNPPAMRAGERFVDENLNR 103 (322)
T ss_pred CCCCeEEEEccccCCchhHHHHHHHHHHhhhhc--------c-ccCCeEEEEEeeCHHHHHhCcccCCCCccC
Confidence 446899999999999999999999999998753 1 22222346678999999887663 3377
No 142
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.92 E-value=0.0023 Score=67.22 Aligned_cols=62 Identities=31% Similarity=0.290 Sum_probs=51.0
Q ss_pred CcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC------CCcCC
Q psy11074 99 MKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL------NTKQK 170 (710)
Q Consensus 99 ~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~------NR~~p 170 (710)
.-|.++++|+.||+|.-|+.++.+|+++|-.. + =.=+|+|||.+||=+++...|... ||..|
T Consensus 47 ~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~a--------~--i~GtV~iVP~aN~~a~~~~~R~~p~d~~N~NR~fP 114 (331)
T COG3608 47 PGPSVLLQAGVHGDELPGVIALRRLIPALDPA--------D--ISGTVIIVPIANPPAFEAQGRFSPGDDTNLNRAFP 114 (331)
T ss_pred CCCEEEEEecccccccchHHHHHHHHHhcCHh--------h--cCceEEEEeccCHHHHHhhcccCCCCCCcccccCC
Confidence 36999999999999999999999999998543 2 246789999999999888765433 77666
No 143
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=96.85 E-value=0.0022 Score=68.43 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=45.9
Q ss_pred CCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcC---CCCC
Q psy11074 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG---NLNT 167 (710)
Q Consensus 98 ~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~---~~NR 167 (710)
..-|.|+++|++||||..|.+++..|++.+... .+.-+..+.++ +.||.++....|. |-||
T Consensus 39 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~~~~~~~l~~i-~~Np~A~~~~~R~~~~DLNR 102 (319)
T TIGR03242 39 PPQKSLVISAGIHGNETAPIEILEQLLGDIAAG--------KLPLRVRLLVI-LGNPPAMRTGKRYLHDDLNR 102 (319)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhhhhhc--------cccCCceEEEE-EcCHHHHHhCcccCCCCccC
Confidence 346899999999999999999999999988643 12223445444 7999999977663 2387
No 144
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.81 E-value=0.005 Score=57.95 Aligned_cols=75 Identities=29% Similarity=0.486 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeeccc--------------------ceeeCCCeEE-EeeccCceEE--------EEEEe
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWNDK--------------------AVTVTNRGEY-WRLLARGKYV--------VTASA 676 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~~--------------------~~~t~~~G~f-~~~l~~G~y~--------l~vs~ 676 (710)
-|.|+|+|.+|.|+++|.|.+-..+. ...||++|.| +..++||.|. +.|.+
T Consensus 13 ~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~~R~~HiH~~V~~ 92 (146)
T cd00421 13 TLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPIGRPPHIHFKVFA 92 (146)
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCCCCCCEEEEEEEC
Confidence 58999999999999999998854322 4689999999 8889999998 67888
Q ss_pred cCc-eeeeeeceEecCCCcEEEEEEE
Q psy11074 677 PGY-EPVTTEPLDVPDTESVRLDFML 701 (710)
Q Consensus 677 ~Gy-~~~~~~~v~v~~~~~~~~~~~L 701 (710)
.|| ...+.+ +-........-+..+
T Consensus 93 ~g~~~~l~Tq-lyf~~~~~~~~d~~~ 117 (146)
T cd00421 93 PGYNRRLTTQ-LYFPGDPLNDSDPVF 117 (146)
T ss_pred CCccCcEEEE-EEeCCCcccccCeec
Confidence 999 666666 655543333334433
No 145
>PRK02259 aspartoacylase; Provisional
Probab=96.77 E-value=0.0015 Score=68.84 Aligned_cols=58 Identities=22% Similarity=0.106 Sum_probs=44.3
Q ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC---CCC
Q psy11074 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN---LNT 167 (710)
Q Consensus 100 kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~---~NR 167 (710)
-+.|+++||+||||..|.+++..+++.+... . + .....++|+.||.++....|.. -||
T Consensus 2 ~~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~--------~-~-~g~~i~~~i~Np~A~~~~~Ry~~~DLNR 62 (288)
T PRK02259 2 INRVAIVGGTHGNEITGIYLVKKWQQQPNLI--------N-R-KGLEVQTVIGNPEAIEAGRRYIDRDLNR 62 (288)
T ss_pred CcEEEEEcCccCChhHHHHHHHHHHhccccc--------c-c-CccEEEEEeeCHHHHHhCCCCCcccCCC
Confidence 3679999999999999999988888875321 1 2 3335678899999999877642 288
No 146
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.67 E-value=0.0038 Score=57.69 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=49.3
Q ss_pred cceEEEEEc-CCCCCCCCeEEEEeecc-------cceeeCCCeEE-E---ee-ccCceEEEEEEecCceee
Q psy11074 625 RGVYGIVTD-TYGNPLPSAIITVRWND-------KAVTVTNRGEY-W---RL-LARGKYVVTASAPGYEPV 682 (710)
Q Consensus 625 ~gI~G~V~d-~~g~pi~~A~v~v~~~~-------~~~~t~~~G~f-~---~~-l~~G~y~l~vs~~Gy~~~ 682 (710)
..|++.|.| ..|+|.+++.|.+.... ....||.+|+| . .. +.+|.|+|++...+|=..
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~~ 97 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKK 97 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhhc
Confidence 359999999 68999999999998765 55899999999 3 23 789999999999998763
No 147
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.65 E-value=0.0059 Score=56.57 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEeeccccCccchHHHHHHHHHHHHHhcCCCHHHHHHhhcccEEEEEeeCcccchhcccCCCCCCCCCCCCCCCCcccCC
Q psy11074 418 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLN 497 (710)
Q Consensus 418 ~i~~~~Hg~E~~g~~~~l~l~~~l~~~y~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~R~n~~GvDlN 497 (710)
+++||+||+|+-.++-++. +..+-. .+..+.++|-+|+--|.-+ ||
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~~~------------~ng~l~Vip~v~n~~YIST---------------------ld 63 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVLPE------------ENGVLRVIPKVENGPYIST---------------------LD 63 (198)
T ss_pred EEEeeccCcccchhhhhhh-hcccCc------------cCceEEEEeccCCCCceee---------------------cC
Confidence 9999999999998888877 333322 2357999998888776532 12
Q ss_pred CCCCCCCcccCCCCChHHHHHHHHHHHhCCceEEEEecCCcccccccc-cCCCCCCCCccccCCcccccccceEEeecCc
Q psy11074 498 RNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGGAVARDYAS-RNPMMAPGHACGFDFKDGITNGNYWYKVTGG 576 (710)
Q Consensus 498 Rnf~~~~~~~~~~~sepEt~al~~~~~~~~~~~~~~lH~~~~~~~y~~-~~~~~~~~~~~~~~~~~g~~~~~~~y~~~G~ 576 (710)
-.| -..++-+.+.+.+++++|+.++-+|++.. ..|.. +.+.-..|.+.--.+..|.- -|+
T Consensus 64 p~y----------y~s~~G~~ilr~vek~rP~vY~ElH~Yr~-eny~KLt~~~Rs~gVP~lidl~agVL--------lgS 124 (198)
T COG4073 64 PSY----------YRSEVGARILRVVEKLRPDVYVELHCYRP-ENYRKLTAERRSGGVPPLIDLGAGVL--------LGS 124 (198)
T ss_pred hhh----------ccchhhHHHHHHHHHhCCceEEEEeecCH-hHHHHhccccccCCCCceeeecCCeE--------Eee
Confidence 122 12366778889999999999999999864 11210 11111222221111222211 244
Q ss_pred hhhhccc--cCCeEEEEEEecCCCCCCc
Q psy11074 577 MQDFNYV--HSNCFEITMELSCCKYPKA 602 (710)
Q Consensus 577 ~~D~~y~--~~~~~~~T~Elg~~~~p~~ 602 (710)
..-|.-. ..-.+.+|+|+.|.+-+..
T Consensus 125 VSP~irkr~~~e~lclT~Eip~~~s~~s 152 (198)
T COG4073 125 VSPRIRKRIFKEDLCLTLEIPRRGSDRS 152 (198)
T ss_pred cCHHHHHHhcccceEEEEEecCCCChhH
Confidence 4444431 2367889999999766543
No 148
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.63 E-value=0.0038 Score=57.69 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=49.0
Q ss_pred ceeEEEEcC-CCCCCCCcEEEEecee-------eceeeCCCceEee----e-ecCceeEEEEEeCCcccc
Q psy11074 221 GVYGIVTDT-YGNPLPSAIITVRWND-------KAVTVTNRGEYWR----L-LARGKYVVTASAPGYEPV 277 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~~A~i~v~g~~-------~~~~t~~~G~y~~----~-l~~G~Y~l~vs~~Gy~~~ 277 (710)
.|+|+|.|. .|.|++++.|.+.... ....||.+|.+.. . +.+|.|.|++...+|-..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~~ 97 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKK 97 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhhc
Confidence 499999997 9999999999998765 4478999999942 2 678999999999999874
No 149
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.55 E-value=0.0028 Score=66.28 Aligned_cols=57 Identities=23% Similarity=0.149 Sum_probs=41.9
Q ss_pred CeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCC---CCC
Q psy11074 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN---LNT 167 (710)
Q Consensus 101 p~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~---~NR 167 (710)
+.|+++||+||||..|..++..+++.+... .......++|+.||.+++...|.. -||
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~----------~~~~~~v~~~i~Np~A~~~~~Ry~d~DLNR 60 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI----------QRPSLEVHPVIANPRAVEACRRYIDTDLNR 60 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc----------ccCCeEEEEEecCHHHHHhCCccCCCCCCC
Confidence 469999999999999999888888865321 123334556678999998776643 388
No 150
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=96.49 E-value=0.023 Score=46.69 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEecee----eceeeCCCceEeeeecCceeEEEEEeCCcccccccceecCCCCceEEEE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWND----KAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDF 294 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~~----~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 294 (710)
|.|+|+ .+|+|+++|-|.+.... .-+.|+..|+|..--.||+++|++-+.+=... ..|.-..+....+++
T Consensus 10 ItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~WtvRal~~~g~~d--~~V~a~~g~v~~v~v 83 (85)
T PF07210_consen 10 ITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGSWTVRALSRGGNGD--AMVTAEGGGVHEVDV 83 (85)
T ss_pred EEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCceEEEEEccCCCCc--eEEecCCCceEEEEe
Confidence 999999 99999999999985432 23789999999888999999999866654442 234444444444443
No 151
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.26 E-value=0.025 Score=48.95 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=36.9
Q ss_pred ceEEEEEcCCC--CCCC--CeEEEEe-------ec--ccceeeCCCeEE-EeeccCceEEEEEEec----Cceeeeeece
Q psy11074 626 GVYGIVTDTYG--NPLP--SAIITVR-------WN--DKAVTVTNRGEY-WRLLARGKYVVTASAP----GYEPVTTEPL 687 (710)
Q Consensus 626 gI~G~V~d~~g--~pi~--~A~v~v~-------~~--~~~~~t~~~G~f-~~~l~~G~y~l~vs~~----Gy~~~~~~~v 687 (710)
.|+|+|.-.+| .+.. .+.|-+. +. ...+.+|.+|.| +.+++||+|+|.+-.. -|...... |
T Consensus 4 ~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~~~~~~-I 82 (95)
T PF14686_consen 4 SVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYKVASDS-I 82 (95)
T ss_dssp EEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEEEEEEE-E
T ss_pred EEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceEEecce-E
Confidence 48999886666 2333 3444443 11 245789999999 8889999999999884 45555555 8
Q ss_pred EecCCCcE
Q psy11074 688 DVPDTESV 695 (710)
Q Consensus 688 ~v~~~~~~ 695 (710)
+|..+.++
T Consensus 83 tV~~g~~~ 90 (95)
T PF14686_consen 83 TVSGGTTT 90 (95)
T ss_dssp EE-T-EEE
T ss_pred EEcCCcEe
Confidence 88755543
No 152
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.24 E-value=0.013 Score=55.04 Aligned_cols=53 Identities=32% Similarity=0.604 Sum_probs=42.7
Q ss_pred eeEEEEcCCCCCCCCcEEEEeceee--------------------ceeeCCCceE-eeeecCceeE--------EEEEeC
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWNDK--------------------AVTVTNRGEY-WRLLARGKYV--------VTASAP 272 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~~~--------------------~~~t~~~G~y-~~~l~~G~Y~--------l~vs~~ 272 (710)
+.|+|+|.+|.|+++|.|.|-..+. .+.||.+|.| +..+.||.|. +.|.+.
T Consensus 14 l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~~R~~HiH~~V~~~ 93 (146)
T cd00421 14 LTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPIGRPPHIHFKVFAP 93 (146)
T ss_pred EEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCCCCCCEEEEEEECC
Confidence 8999999999999999999843322 2789999999 5669999999 455556
Q ss_pred Cc
Q psy11074 273 GY 274 (710)
Q Consensus 273 Gy 274 (710)
||
T Consensus 94 g~ 95 (146)
T cd00421 94 GY 95 (146)
T ss_pred Cc
Confidence 66
No 153
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=96.23 E-value=0.043 Score=45.12 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc----cceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEecCCCcEEEEE
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND----KAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDF 699 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~----~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 699 (710)
-|.|+|+ .+|+|+++|-|.+.... ..+.|+++|+|..--.||+.+|.+-+.+=.. ... |.-..+....+++
T Consensus 9 VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~WtvRal~~~g~~-d~~-V~a~~g~v~~v~v 83 (85)
T PF07210_consen 9 VITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGSWTVRALSRGGNG-DAM-VTAEGGGVHEVDV 83 (85)
T ss_pred EEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCceEEEEEccCCCC-ceE-EecCCCceEEEEe
Confidence 4999999 99999999999987654 3478999999965679999999987765443 223 3333343444444
No 154
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.18 E-value=0.0081 Score=64.17 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=40.3
Q ss_pred CeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcC
Q psy11074 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163 (710)
Q Consensus 101 p~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~ 163 (710)
|.|+++|++||||..|..++..+++++... . +... .++++.||-++....|.
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~~--------~-~~~~--~~l~i~Np~A~~~~~R~ 86 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEAR--------P-LPRS--LLLFIGNVAAALAGVRR 86 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCChh--------h-cCCc--EEEEEeCHHHHHhCccc
Confidence 899999999999999999999998876432 2 3344 33456999999876653
No 155
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=95.83 E-value=0.043 Score=44.37 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=41.3
Q ss_pred CCCeEEEEeecc----c--ceeeCCCeEE-EeeccCceEEEEEEe--cCceeeeee-ceEecCCCcEE
Q psy11074 639 LPSAIITVRWND----K--AVTVTNRGEY-WRLLARGKYVVTASA--PGYEPVTTE-PLDVPDTESVR 696 (710)
Q Consensus 639 i~~A~v~v~~~~----~--~~~t~~~G~f-~~~l~~G~y~l~vs~--~Gy~~~~~~-~v~v~~~~~~~ 696 (710)
|+||++.|.... . ..+||++|.| +..|++|.|.|+-.. .||...... .+.+..++...
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~~~ 68 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGDVT 68 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSCEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCEEE
Confidence 467777776543 2 2689999999 888999999997655 899976654 24555555443
No 156
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=95.83 E-value=0.029 Score=57.30 Aligned_cols=67 Identities=34% Similarity=0.502 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceE----------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKY---------------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y---------------- 670 (710)
-+.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||.|
T Consensus 106 ~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~g 185 (256)
T cd03458 106 FVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPPDGPTGELLEALG 185 (256)
T ss_pred EEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCCCCcHHHHHHhcc
Confidence 4899999999999999999773211 13689999999 888889877
Q ss_pred ---------EEEEEecCceeeeeeceEecCCC
Q psy11074 671 ---------VVTASAPGYEPVTTEPLDVPDTE 693 (710)
Q Consensus 671 ---------~l~vs~~Gy~~~~~~~v~v~~~~ 693 (710)
.+.|++.||.+.+.+ +-...+.
T Consensus 186 rh~~RpaHIHf~V~a~G~~~LtTq-lyf~~d~ 216 (256)
T cd03458 186 RHPWRPAHIHFMVSAPGYRTLTTQ-IYFEGDP 216 (256)
T ss_pred cCCCCCCeEEEEEECCCcceeeEE-EecCCCc
Confidence 667999999888877 7665443
No 157
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=95.68 E-value=0.036 Score=56.28 Aligned_cols=66 Identities=29% Similarity=0.395 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceE----------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKY---------------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y---------------- 670 (710)
-+.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||.|
T Consensus 101 ~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~g 180 (247)
T cd03462 101 LFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQIPNDGPTGALLEAMG 180 (247)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCCCCCCcHHHHHHhcc
Confidence 4899999999999999999773211 03588999999 888888766
Q ss_pred ---------EEEEEecCceeeeeeceEecCC
Q psy11074 671 ---------VVTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 671 ---------~l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
.+.|++.||.+.+.+ +-...+
T Consensus 181 rh~~RpaHIHf~V~a~G~~~L~Tq-lyf~~d 210 (247)
T cd03462 181 GHSWRPAHVHFKVRADGYETLTTQ-LYFEGG 210 (247)
T ss_pred cCCCCCCeEEEEEECCCcCceEEE-EecCCC
Confidence 567899999888777 655543
No 158
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=95.66 E-value=0.04 Score=56.00 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceE----------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKY---------------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y---------------- 670 (710)
-|.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||.|
T Consensus 100 ~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~g 179 (246)
T TIGR02465 100 LIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQIPDAGPTGALLETMG 179 (246)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCCCCCCchHHHHHhcc
Confidence 4899999999999999999773211 13689999999 888888766
Q ss_pred ---------EEEEEecCceeeeeeceEecCC
Q psy11074 671 ---------VVTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 671 ---------~l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
.+.|++.||.+.+.+ +-...+
T Consensus 180 rh~~RpaHIH~~V~a~G~~~L~Tq-iyf~~d 209 (246)
T TIGR02465 180 RHSWRPAHVHYKVRADGYRPLTTQ-AYFEGG 209 (246)
T ss_pred cCCCCCCeEEEEEECCCcCceEEe-EecCCC
Confidence 457899999888777 655544
No 159
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.64 E-value=0.012 Score=61.50 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=36.5
Q ss_pred CeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhh
Q psy11074 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA 160 (710)
Q Consensus 101 p~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~ 160 (710)
|.|+++|++||||..|.+++..|++. ++ ..|.. .+.++ +.||-++...
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~-------~~---~~l~G-~li~~-~~N~~A~~~~ 48 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE-------GL---RPRRG-RLTLA-FANVAAYARF 48 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC-------cc---cccCC-CEEEE-EECHHHHHhc
Confidence 78999999999999999999999873 11 11444 34444 7999999853
No 160
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=95.50 E-value=0.038 Score=47.80 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=33.6
Q ss_pred eeEEEEcCCC---CCC-CCcEEEEe---------ceeeceeeCCCceE-eeeecCceeEEEEEeCCccccc---ccceec
Q psy11074 222 VYGIVTDTYG---NPL-PSAIITVR---------WNDKAVTVTNRGEY-WRLLARGKYVVTASAPGYEPVT---TEPLDV 284 (710)
Q Consensus 222 i~G~V~d~~g---~pi-~~A~i~v~---------g~~~~~~t~~~G~y-~~~l~~G~Y~l~vs~~Gy~~~~---~~~v~v 284 (710)
++|.|..++| .+. ..+.|-+. +....+.+|.+|.| +..+.||+|.|.+=..|..-.- ...|+|
T Consensus 5 VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~~~~~~ItV 84 (95)
T PF14686_consen 5 VSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYKVASDSITV 84 (95)
T ss_dssp EEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEEEEEEEEEE
T ss_pred EEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceEEecceEEE
Confidence 8999987766 333 23444444 12234789999999 5669999999999775533221 156777
Q ss_pred CCCCc
Q psy11074 285 PDTES 289 (710)
Q Consensus 285 ~~~~~ 289 (710)
..++.
T Consensus 85 ~~g~~ 89 (95)
T PF14686_consen 85 SGGTT 89 (95)
T ss_dssp -T-EE
T ss_pred cCCcE
Confidence 65543
No 161
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=95.48 E-value=0.049 Score=56.49 Aligned_cols=67 Identities=25% Similarity=0.436 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceE----------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKY---------------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y---------------- 670 (710)
-+.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||-|
T Consensus 130 ~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~g 209 (285)
T TIGR02439 130 FLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCPPQGPTQQLLNLLG 209 (285)
T ss_pred EEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCCCCCcHHHHHHhcc
Confidence 4899999999999999999773211 13689999999 888888777
Q ss_pred ---------EEEEEecCceeeeeeceEecCCC
Q psy11074 671 ---------VVTASAPGYEPVTTEPLDVPDTE 693 (710)
Q Consensus 671 ---------~l~vs~~Gy~~~~~~~v~v~~~~ 693 (710)
.+.|++.||++.+.+ +-+..+.
T Consensus 210 rh~~RpaHIHf~V~a~G~~~LtTQ-iyf~gd~ 240 (285)
T TIGR02439 210 RHGNRPAHVHFFVSAPGHRKLTTQ-INIEGDP 240 (285)
T ss_pred CCCCCCCeEEEEEecCCCCeeEEE-EecCCCC
Confidence 467999999998888 7665443
No 162
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.31 E-value=0.098 Score=51.04 Aligned_cols=64 Identities=38% Similarity=0.673 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc--------------------cceeeCCCeEE-EeeccCceEE-------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND--------------------KAVTVTNRGEY-WRLLARGKYV------------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~--------------------~~~~t~~~G~f-~~~l~~G~y~------------- 671 (710)
-|.|+|+|.+|+||++|.|.|=-.+ -...||++|.| ++.+.||.|.
T Consensus 31 ~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~ 110 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPIPDDGPVGFLLRA 110 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEESTTSHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCCCCccHHHHHHhh
Confidence 4999999999999999999883211 12689999999 8889898886
Q ss_pred ------------EEEEecCceeeeeeceEec
Q psy11074 672 ------------VTASAPGYEPVTTEPLDVP 690 (710)
Q Consensus 672 ------------l~vs~~Gy~~~~~~~v~v~ 690 (710)
+.|++.||...+.+ +-..
T Consensus 111 ~g~~~~Rp~HIH~~v~~~G~~~L~Tq-lyf~ 140 (183)
T PF00775_consen 111 LGRHPWRPAHIHFKVSAPGYRPLTTQ-LYFP 140 (183)
T ss_dssp TTTTEEE-SEEEEEEEETTBCEEEEE-EEET
T ss_pred hccCCCcCCeEEEEEecCCCCeEEEe-eEcC
Confidence 45888888777766 6554
No 163
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.31 E-value=0.065 Score=50.97 Aligned_cols=65 Identities=32% Similarity=0.500 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc----------------------c-ceeeCCCeEE-EeeccCceEE----------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND----------------------K-AVTVTNRGEY-WRLLARGKYV---------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~----------------------~-~~~t~~~G~f-~~~l~~G~y~---------- 671 (710)
-|.|+|+|.+|+||++|.|.|=..+ . ...||.+|.| ++.+.||.|.
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p~~~~R~~H 96 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWRNGAWRAPH 96 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCCCCCCcCCE
Confidence 4899999999999999999773211 0 2579999999 8889999988
Q ss_pred --EEEEecCc-eeeeeeceEecC
Q psy11074 672 --VTASAPGY-EPVTTEPLDVPD 691 (710)
Q Consensus 672 --l~vs~~Gy-~~~~~~~v~v~~ 691 (710)
+.|.+.|| ...+.+ +-...
T Consensus 97 IH~~V~~~g~~~~L~Tq-lyf~~ 118 (158)
T cd03459 97 IHVSVFARGLLERLVTR-LYFPG 118 (158)
T ss_pred EEEEEECCCcccceEEe-EecCC
Confidence 56888999 766666 65554
No 164
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=95.24 E-value=0.063 Score=55.62 Aligned_cols=67 Identities=30% Similarity=0.531 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceE----------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKY---------------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y---------------- 670 (710)
-+.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||-|
T Consensus 126 ~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~g 205 (282)
T cd03460 126 VMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVPPGGPTQQLLNALG 205 (282)
T ss_pred EEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCCCCCcHHHHHHhhc
Confidence 4899999999999999999773211 13689999999 888888877
Q ss_pred ---------EEEEEecCceeeeeeceEecCCC
Q psy11074 671 ---------VVTASAPGYEPVTTEPLDVPDTE 693 (710)
Q Consensus 671 ---------~l~vs~~Gy~~~~~~~v~v~~~~ 693 (710)
.+.|++.||++.+.+ +-...+.
T Consensus 206 rh~~RpaHIHf~V~a~G~~~LtTq-lyf~gd~ 236 (282)
T cd03460 206 RHGNRPAHIHFFVSAPGHRKLTTQ-INIEGDP 236 (282)
T ss_pred CCCCCCCeEEEEEecCCcCceEEE-EecCCCC
Confidence 467999999888888 7665443
No 165
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.07 E-value=0.059 Score=52.56 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=49.7
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------c----ceeeCCCeEE-EeeccCceEE-----------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------K----AVTVTNRGEY-WRLLARGKYV----------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~----~~~t~~~G~f-~~~l~~G~y~----------- 671 (710)
-+.|+|+|.+|+||++|.|.|=..+ . ...||++|.| ++.+.||.|.
T Consensus 38 ~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~~~g~~R~~HI 117 (185)
T cd03463 38 TLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPGRDGAGQAPHI 117 (185)
T ss_pred EEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCCCCCCCcCCeE
Confidence 4899999999999999999773211 1 2579999999 8889999886
Q ss_pred -EEEEecCc-eeeeeeceEec
Q psy11074 672 -VTASAPGY-EPVTTEPLDVP 690 (710)
Q Consensus 672 -l~vs~~Gy-~~~~~~~v~v~ 690 (710)
+.|.+.|| +..+.+ +-..
T Consensus 118 H~~V~~~g~~~~L~Tq-lyf~ 137 (185)
T cd03463 118 NVWVFARGLLKHLFTR-IYFP 137 (185)
T ss_pred EEEEECCCcccceEEe-EecC
Confidence 57888999 666666 5444
No 166
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=94.93 E-value=0.013 Score=48.05 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=31.4
Q ss_pred CeEEeccchHHHHHHhhc-CCceeEEecCCccccccc
Q psy11074 1 MTLIVPSLSLLLCHVTLS-TAADYYFDFDDLTGLEDA 36 (710)
Q Consensus 1 ~~~~v~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 36 (710)
++|+|||..+..+..+|. .+++|.++|+|||+++++
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~i~~~v~i~dvq~~Id~ 72 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHGIEYEVLIEDVQKLIDE 72 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-EEEEEES-HHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEeHHHHHHHHh
Confidence 479999999999999998 999999999999999874
No 167
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.92 E-value=0.08 Score=54.15 Aligned_cols=45 Identities=33% Similarity=0.416 Sum_probs=36.3
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee---------e----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND---------K----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~---------~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|+|+|.+|+||++|.|.|= |.- . .+.||.+|.| ++.+.||.|.
T Consensus 107 l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Yp 170 (256)
T cd03458 107 VHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYP 170 (256)
T ss_pred EEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcc
Confidence 999999999999999999882 210 0 2789999999 5669998883
No 168
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=94.88 E-value=0.072 Score=55.13 Aligned_cols=66 Identities=35% Similarity=0.513 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceEE---------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKYV--------------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y~--------------- 671 (710)
-+.|+|+|.+|+||++|.|-|=..+ -...||++|.| |+.+.||.|.
T Consensus 122 ~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~g 201 (277)
T cd03461 122 FVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIPTDGPVGKLLKAMG 201 (277)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCCCCcHHHHHHhhh
Confidence 4899999999999999999773211 13689999999 8888888764
Q ss_pred ----------EEEEecCceeeeeeceEecCC
Q psy11074 672 ----------VTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 672 ----------l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
+.|++.||.+.+.+ +-...+
T Consensus 202 rh~~RpaHIHf~V~a~G~~~L~Tq-lyf~~d 231 (277)
T cd03461 202 RHPMRPAHIHFMVTAPGYRTLVTQ-IFDSGD 231 (277)
T ss_pred ccCCCCCeEEEEEEcCCcCceEEe-EecCCC
Confidence 56899999988777 766544
No 169
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.69 E-value=0.11 Score=53.91 Aligned_cols=66 Identities=29% Similarity=0.393 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc------------------cceeeCCCeEE-EeeccCceEE---------------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND------------------KAVTVTNRGEY-WRLLARGKYV--------------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~------------------~~~~t~~~G~f-~~~l~~G~y~--------------- 671 (710)
-|.|+|+|.+|+||++|.|-|=..+ -...||++|.| ++.+.||-|.
T Consensus 134 ~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~YpiP~dGp~G~lL~~~G 213 (281)
T TIGR02438 134 VFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQIPTDGPTGKFIAAAG 213 (281)
T ss_pred EEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCCCCchHHHHHhcc
Confidence 4899999999999999999882111 03688999999 7778886664
Q ss_pred ----------EEEEecCceeeeeeceEecCC
Q psy11074 672 ----------VTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 672 ----------l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
+.|++.||++.+.+ +-...+
T Consensus 214 rh~~RpaHIHf~V~a~G~~~LtTq-iyf~gd 243 (281)
T TIGR02438 214 GHPWRPAHLHLKVSAPGHELITTQ-LYFKGG 243 (281)
T ss_pred cCCCCCCEEEEEEECCCcceEEEe-EecCCC
Confidence 56999999998887 765544
No 170
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=94.65 E-value=0.21 Score=43.68 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=43.8
Q ss_pred ceEEEEEcCCCCCCCCeEEEE--eecc----c---ceeeCCCeEE---EeeccCceEEEEEEecCceeeeee
Q psy11074 626 GVYGIVTDTYGNPLPSAIITV--RWND----K---AVTVTNRGEY---WRLLARGKYVVTASAPGYEPVTTE 685 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v--~~~~----~---~~~t~~~G~f---~~~l~~G~y~l~vs~~Gy~~~~~~ 685 (710)
-+.-.|+|..|.||++..|.+ .... . ...||.+|.+ +..-.+|.|+|+++..|-......
T Consensus 26 tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~~~~~ 97 (100)
T PF02369_consen 26 TLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGSTSVTS 97 (100)
T ss_dssp EEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcceeEEe
Confidence 488899999999999999999 3221 1 3689999999 445689999999999988777665
No 171
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.65 E-value=0.11 Score=50.91 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeec-------------------c---c-ceeeCCCeEE-EeeccCceEE----------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWN-------------------D---K-AVTVTNRGEY-WRLLARGKYV---------- 671 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~-------------------~---~-~~~t~~~G~f-~~~l~~G~y~---------- 671 (710)
-++|+|+|.+|+||++|.|-|=.. . + ...||++|.| ++.+.||.|.
T Consensus 41 ~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~~~g~~R~~H 120 (193)
T TIGR02423 41 RLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPDRDGVLQAPH 120 (193)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCCCCCCCcCCe
Confidence 489999999999999999977321 0 0 2578999999 8889999773
Q ss_pred --EEEEecCc-eeeeee
Q psy11074 672 --VTASAPGY-EPVTTE 685 (710)
Q Consensus 672 --l~vs~~Gy-~~~~~~ 685 (710)
+.|.+.|| +..+.+
T Consensus 121 iH~~V~a~G~~~~LtTq 137 (193)
T TIGR02423 121 INVSVFARGINRRLYTR 137 (193)
T ss_pred EEEEEECCCcccceEEE
Confidence 56888887 555444
No 172
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.47 E-value=0.12 Score=52.60 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=36.1
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee------------e-ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND------------K-AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~------------~-~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|+|+|.+|+||++|.|.|= |.- . ...||.+|.| ++.+.||.|.
T Consensus 101 v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Yp 164 (246)
T TIGR02465 101 IRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQ 164 (246)
T ss_pred EEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence 999999999999999999982 210 0 2689999999 5668898883
No 173
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.40 E-value=0.17 Score=50.76 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc----------------------c-ceeeCCCeEE-EeeccCceE-----------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND----------------------K-AVTVTNRGEY-WRLLARGKY----------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~----------------------~-~~~t~~~G~f-~~~l~~G~y----------- 670 (710)
-|.|+|+|.+|+||++|.|.|=..+ . ...||++|.| |+.+.||.|
T Consensus 62 ~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~p~~~~~~R~ 141 (220)
T TIGR02422 62 IVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPWGNHHNAWRP 141 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCCCCCCcC
Confidence 4899999999999999999773210 0 2578999999 888999988
Q ss_pred ---EEEEEecCce-eeeee
Q psy11074 671 ---VVTASAPGYE-PVTTE 685 (710)
Q Consensus 671 ---~l~vs~~Gy~-~~~~~ 685 (710)
.+.|.+.||. ..+.+
T Consensus 142 pHIH~~V~~~g~~~~L~Tq 160 (220)
T TIGR02422 142 AHIHFSLFGTSFAQRLITQ 160 (220)
T ss_pred CeEEEEEECCCCccceEEe
Confidence 3456888883 44333
No 174
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=94.38 E-value=0.13 Score=41.52 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=37.5
Q ss_pred CCCcEEEEeceee------ceeeCCCceE-eeeecCceeEEEEEe--CCcccccc-cceecCCCCce
Q psy11074 234 LPSAIITVRWNDK------AVTVTNRGEY-WRLLARGKYVVTASA--PGYEPVTT-EPLDVPDTESV 290 (710)
Q Consensus 234 i~~A~i~v~g~~~------~~~t~~~G~y-~~~l~~G~Y~l~vs~--~Gy~~~~~-~~v~v~~~~~~ 290 (710)
|++|++.+...+. ..+|+.+|.| +..|++|.|.|.-.. .||..... ..+.+..++.+
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGDV 67 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSCE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCEE
Confidence 3566666643221 2689999999 667999999997654 69987652 33455555443
No 175
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.35 E-value=0.13 Score=52.36 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=35.6
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee--------e-----ceeeCCCceE-eeeecCcee
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND--------K-----AVTVTNRGEY-WRLLARGKY 265 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~--------~-----~~~t~~~G~y-~~~l~~G~Y 265 (710)
++|.|+|.+|+||++|.|.|= |.- . ...||.+|.| ++.+.||.|
T Consensus 102 l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Y 164 (247)
T cd03462 102 FRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPY 164 (247)
T ss_pred EEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCc
Confidence 999999999999999999982 210 0 2688999999 566899888
No 176
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.27 E-value=0.16 Score=46.30 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=42.0
Q ss_pred CCCeEEEEeeccc---ceeeCCCeEE-EeeccCceEEEEEEecCceeeeeeceEec
Q psy11074 639 LPSAIITVRWNDK---AVTVTNRGEY-WRLLARGKYVVTASAPGYEPVTTEPLDVP 690 (710)
Q Consensus 639 i~~A~v~v~~~~~---~~~t~~~G~f-~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~ 690 (710)
.++..|.+.+... .+....+|.| +.++++|+|.|.|.+..|.=.... |+|.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~R-VdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPYR-VDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCEE-EEEe
Confidence 4667888877665 7889999999 899999999999999887666666 6666
No 177
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.19 E-value=0.19 Score=50.36 Aligned_cols=64 Identities=23% Similarity=0.483 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc----------------------c-ceeeCCCeEE-EeeccCceE-----------
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND----------------------K-AVTVTNRGEY-WRLLARGKY----------- 670 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~----------------------~-~~~t~~~G~f-~~~l~~G~y----------- 670 (710)
-|.|+|+|.+|+||++|.|.|=..+ + ...||++|.| |+.+.||.|
T Consensus 67 ~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~p~~r~~~Rp 146 (220)
T cd03464 67 IVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPWGNHPNAWRP 146 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccCCCCCCCCcC
Confidence 4889999999999999999773210 0 2588999999 888999988
Q ss_pred ---EEEEEecCce-eeeeeceEec
Q psy11074 671 ---VVTASAPGYE-PVTTEPLDVP 690 (710)
Q Consensus 671 ---~l~vs~~Gy~-~~~~~~v~v~ 690 (710)
.+.|.+.||. ..+.+ +-..
T Consensus 147 pHIH~~V~a~G~~~~L~Tq-lYF~ 169 (220)
T cd03464 147 AHIHFSLFGPSFATRLVTQ-MYFP 169 (220)
T ss_pred CeEEEEEECCCccCceEEe-EECC
Confidence 3456888986 34444 4333
No 178
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=94.15 E-value=0.15 Score=53.05 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee---------e----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND---------K----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~---------~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|+|+|.+|+||++|.|.|= |.- . ...||.+|.| ++.+.||.|.
T Consensus 131 v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 131 LHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYG 194 (285)
T ss_pred EEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCc
Confidence 999999999999999999882 210 0 2789999999 5669998884
No 179
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.10 E-value=0.14 Score=49.97 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce-------------ee----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN-------------DK----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~-------------~~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|.|+|.+|+||++|.|.|= |. +. .+.||.+|.| ++.+.||.|.
T Consensus 39 l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 39 LEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred EEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 999999999999999999882 11 11 1679999999 5668999886
No 180
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=94.02 E-value=0.14 Score=50.00 Aligned_cols=46 Identities=28% Similarity=0.544 Sum_probs=32.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee---------------eceeeCCCceE-eeeecCceeEE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND---------------KAVTVTNRGEY-WRLLARGKYVV 267 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~---------------~~~~t~~~G~y-~~~l~~G~Y~l 267 (710)
++|.|+|.+|+||++|.|.|= |.- -.+.||.+|.| ++.+.||.|.+
T Consensus 32 l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 32 LHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp EEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred EEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 999999999999999999981 110 01789999999 56799999873
No 181
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.95 E-value=0.18 Score=47.99 Aligned_cols=45 Identities=29% Similarity=0.533 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce--------------ee----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN--------------DK----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~--------------~~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|+|+|.+|+||++|.|.|= |. +. ...||.+|.| ++.+.||.|.
T Consensus 18 l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~ 86 (158)
T cd03459 18 LEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYP 86 (158)
T ss_pred EEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcC
Confidence 899999999999999999881 11 01 1679999999 5679999988
No 182
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.86 E-value=0.17 Score=52.55 Aligned_cols=45 Identities=31% Similarity=0.456 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----cee---------e----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WND---------K----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~~---------~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|.|+|.+|+||++|.|.|= |.- . ...||.+|.| ++.+.||-|.
T Consensus 127 l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 127 MHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYG 190 (282)
T ss_pred EEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCc
Confidence 999999999999999999882 221 1 2789999999 5669999884
No 183
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=93.75 E-value=0.14 Score=52.96 Aligned_cols=45 Identities=38% Similarity=0.523 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce---------ee----ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN---------DK----AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~---------~~----~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
++|.|+|.+|+||++|.|.|= |. .. ...||.+|.| ++.+.||.|.
T Consensus 123 v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Yp 186 (277)
T cd03461 123 VHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYP 186 (277)
T ss_pred EEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcC
Confidence 999999999999999999882 21 00 2789999999 5669998886
No 184
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=93.70 E-value=0.36 Score=51.76 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEeeee-ecCCc--eEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCc-chHHHHHH
Q psy11074 47 YNSTELDAFILKTVKSYPHLVRAETIGK-SVQGR--NLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDET-VGYALMVF 122 (710)
Q Consensus 47 ~~~~ei~~~l~~l~~~~p~~~~~~~iG~-S~eGr--~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~-~~~~~~~~ 122 (710)
.+|++-.+-+.+.+++....++-+.+-. -.+|. -+-+..++.. ..+..+++++|.||=|= .|+.+-+.
T Consensus 3 ~sY~~AR~~Fl~aA~~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~~--------~a~~lLv~~SGtHGVEGf~GSaiQ~~ 74 (341)
T PF10994_consen 3 QSYAEARERFLAAAEAAGAKLESYPHPLRGPDGEDLATDVAWLGPK--------DASRLLVLTSGTHGVEGFAGSAIQIA 74 (341)
T ss_pred ccHHHHHHHHHHHHHHcCCcceeeeCCCCCCCCCcceeEEEEecCC--------CCCeEEEEEecCCcccccccHHHHHH
Confidence 3788998888888887776555554422 23444 4556666654 23558888999999884 66666788
Q ss_pred HHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhcCCC-----CC
Q psy11074 123 LIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGNL-----NT 167 (710)
Q Consensus 123 l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~-----NR 167 (710)
|++.+.. ..+.+++-+.+|=.+||-|+.+.+|.|. ||
T Consensus 75 ~L~~~~~--------~~~~~~~avllVHAlNPyGfa~~RR~nE~NVDLNR 116 (341)
T PF10994_consen 75 LLREDLA--------RSLPAGVAVLLVHALNPYGFAWLRRVNENNVDLNR 116 (341)
T ss_pred HHHcccc--------cccCCCCeEEEEEccCccccceeeccCCcCcCccc
Confidence 8887622 2567789999999999999999988775 88
No 185
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=93.64 E-value=0.39 Score=41.21 Aligned_cols=60 Identities=25% Similarity=0.260 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc--------cceeeCCCeEE---EeeccCceEEEEEEecCceeeeee
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND--------KAVTVTNRGEY---WRLLARGKYVVTASAPGYEPVTTE 685 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~--------~~~~t~~~G~f---~~~l~~G~y~l~vs~~Gy~~~~~~ 685 (710)
-|.-.|+|.+|.|++++.|.+.-.. -...||.+|.. ++.-.+|.++++++..|..++...
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~~~~~~ 91 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQ 91 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCcceeec
Confidence 4788899999999999998765322 23478999999 344578999999999998876543
No 186
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=93.50 E-value=0.2 Score=51.85 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=36.2
Q ss_pred eeEEEEcCCCCCCCCcEEEE-----ecee------------e-ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITV-----RWND------------K-AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v-----~g~~------------~-~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
+.|+|+|.+|+||++|.|.| .|.- . ...||.+|.| ++.+.||.|.
T Consensus 135 v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 135 FSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQ 198 (281)
T ss_pred EEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcC
Confidence 99999999999999999998 2221 1 2678999999 5668898775
No 187
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.24 E-value=0.17 Score=49.75 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce--------------ee----ceeeCCCceE-eeeecCceeEE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN--------------DK----AVTVTNRGEY-WRLLARGKYVV 267 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~--------------~~----~~~t~~~G~y-~~~l~~G~Y~l 267 (710)
++|+|+|.+|+||++|.|.|= |. +. ...||++|.| ++.+.||.|..
T Consensus 42 l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 42 LEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 999999999999999999871 11 00 1678999999 56699998864
No 188
>KOG1948|consensus
Probab=93.18 E-value=0.25 Score=57.27 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=53.8
Q ss_pred ccceEEEEEc-CCCCCCCCeEEEEeecccceeeCCCeEE-Eee-ccCceEEEEEEecCceeeeeeceEecCCC
Q psy11074 624 HRGVYGIVTD-TYGNPLPSAIITVRWNDKAVTVTNRGEY-WRL-LARGKYVVTASAPGYEPVTTEPLDVPDTE 693 (710)
Q Consensus 624 ~~gI~G~V~d-~~g~pi~~A~v~v~~~~~~~~t~~~G~f-~~~-l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~ 693 (710)
...+.|+|.+ +.|.|+++|.|.|.+ +.+..||.+|.| +.+ +..|+|+|++.+.-++=.+.+ +.|..+.
T Consensus 315 gfSvtGRVl~g~~g~~l~gvvvlvng-k~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~-~kv~pnt 385 (1165)
T KOG1948|consen 315 GFSVTGRVLVGSKGLPLSGVVVLVNG-KSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVH-AKVKPNT 385 (1165)
T ss_pred EEEeeeeEEeCCCCCCccceEEEEcC-cccceEcccceEEeeeeeccCcEEEEEeccceeeeeEE-EEecCCc
Confidence 3469999999 588999999999965 456889999999 666 899999999988877665555 5555443
No 189
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.72 E-value=0.18 Score=50.60 Aligned_cols=47 Identities=28% Similarity=0.480 Sum_probs=36.9
Q ss_pred ceeEEEEcCCCCCCCCcEEEE-----eceee-----------------ceeeCCCceE-eeeecCceeEE
Q psy11074 221 GVYGIVTDTYGNPLPSAIITV-----RWNDK-----------------AVTVTNRGEY-WRLLARGKYVV 267 (710)
Q Consensus 221 gi~G~V~d~~g~pi~~A~i~v-----~g~~~-----------------~~~t~~~G~y-~~~l~~G~Y~l 267 (710)
-++|+|+|.+|.|+++|.|.| .|.-. -+.||++|.| ++.+.||.|-.
T Consensus 74 ~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~ 143 (226)
T COG3485 74 LLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPW 143 (226)
T ss_pred EEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccC
Confidence 399999999999999999988 12111 1679999999 56699987764
No 190
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=92.21 E-value=0.35 Score=42.26 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=40.3
Q ss_pred eeEEEEcCCCCCCCCcEEEE--e--ceee-----ceeeCCCceEee-e--ecCceeEEEEEeCCccccc
Q psy11074 222 VYGIVTDTYGNPLPSAIITV--R--WNDK-----AVTVTNRGEYWR-L--LARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v--~--g~~~-----~~~t~~~G~y~~-~--l~~G~Y~l~vs~~Gy~~~~ 278 (710)
+.-.|+|..|.||++..|.+ . +... ...||.+|.+.. + -.+|.|+|+++..|-....
T Consensus 27 ltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~~~ 95 (100)
T PF02369_consen 27 LTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGSTSV 95 (100)
T ss_dssp EEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcceeE
Confidence 88899999999999999999 2 1111 267999999932 2 5779999999888766553
No 191
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=91.97 E-value=0.41 Score=47.95 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=35.5
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce------------e-----e-ceeeCCCceE-eeeecCceeE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN------------D-----K-AVTVTNRGEY-WRLLARGKYV 266 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~------------~-----~-~~~t~~~G~y-~~~l~~G~Y~ 266 (710)
|+|+|+|.+|+||++|.|.|= |. . . .+.||.+|.| ++.+.||.|.
T Consensus 68 l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 68 VHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 889999999999999999872 10 0 1 1578999999 5669999884
No 192
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=91.23 E-value=0.56 Score=47.01 Aligned_cols=46 Identities=30% Similarity=0.507 Sum_probs=35.9
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-----ce------------e-----e-ceeeCCCceE-eeeecCceeEE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-----WN------------D-----K-AVTVTNRGEY-WRLLARGKYVV 267 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-----g~------------~-----~-~~~t~~~G~y-~~~l~~G~Y~l 267 (710)
|+|+|+|.+|+||++|.|.|= |. + . ...||.+|.| ++.+.||.|.+
T Consensus 63 l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 63 VHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 889999999999999999872 11 0 1 1568999999 56699998843
No 193
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=91.22 E-value=0.85 Score=39.11 Aligned_cols=57 Identities=26% Similarity=0.256 Sum_probs=44.8
Q ss_pred eeEEEEcCCCCCCCCcEEEEe--ce------eeceeeCCCceEeee---ecCceeEEEEEeCCccccc
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR--WN------DKAVTVTNRGEYWRL---LARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~--g~------~~~~~t~~~G~y~~~---l~~G~Y~l~vs~~Gy~~~~ 278 (710)
|.-.|+|++|.|++++.|.+. |. +....||.+|..... -.+|.++|+++..|..+.+
T Consensus 22 i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~~~~ 89 (92)
T smart00634 22 LTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSV 89 (92)
T ss_pred EEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCccee
Confidence 888999999999999998875 21 122578999999433 4579999999999987765
No 194
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.00 E-value=0.42 Score=47.96 Aligned_cols=58 Identities=28% Similarity=0.461 Sum_probs=44.5
Q ss_pred ccceEEEEEcCCCCCCCCeEEEEeecc------------c----------ceeeCCCeEE-EeeccCceE----------
Q psy11074 624 HRGVYGIVTDTYGNPLPSAIITVRWND------------K----------AVTVTNRGEY-WRLLARGKY---------- 670 (710)
Q Consensus 624 ~~gI~G~V~d~~g~pi~~A~v~v~~~~------------~----------~~~t~~~G~f-~~~l~~G~y---------- 670 (710)
..-|+|+|+|.+|.|+++|.|.|=.-+ . .+.||++|.| |+.+.||.|
T Consensus 72 ~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~~~R 151 (226)
T COG3485 72 RILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGPMWR 151 (226)
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCCcCc
Confidence 446999999999999999999773210 0 2589999999 888888765
Q ss_pred ----EEEEEecCcee
Q psy11074 671 ----VVTASAPGYEP 681 (710)
Q Consensus 671 ----~l~vs~~Gy~~ 681 (710)
++.|++.|+..
T Consensus 152 ~aHih~~v~~~g~~~ 166 (226)
T COG3485 152 PAHIHFSVFARGINT 166 (226)
T ss_pred cceeEEEEeCCcccc
Confidence 55677788744
No 195
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=89.99 E-value=1.2 Score=44.75 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=51.3
Q ss_pred ceeEEEEcC-CCCCCC----CcEEEEecee------eceeeCCCceE-eeeecCceeEEEE-EeCC---cccccccceec
Q psy11074 221 GVYGIVTDT-YGNPLP----SAIITVRWND------KAVTVTNRGEY-WRLLARGKYVVTA-SAPG---YEPVTTEPLDV 284 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~----~A~i~v~g~~------~~~~t~~~G~y-~~~l~~G~Y~l~v-s~~G---y~~~~~~~v~v 284 (710)
.++|.|.|. +|+||. ++.|.+-... ..+....+|.| ...|-.|.|+|+. ...| +..-+ ..|.|
T Consensus 23 ~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dt-i~v~i 101 (222)
T PF12866_consen 23 TLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDT-IEVDI 101 (222)
T ss_dssp EEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE---EEEEE
T ss_pred eEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCcc-EEEEe
Confidence 499999995 998884 5677764332 23778899999 6779999999999 7777 66666 56777
Q ss_pred CCCCceEEEEEeec
Q psy11074 285 PDTESVRLDFMLGK 298 (710)
Q Consensus 285 ~~~~~~~~~~~L~~ 298 (710)
+ | .+++||..++
T Consensus 102 ~-G-~t~~d~eVtP 113 (222)
T PF12866_consen 102 K-G-NTTQDFEVTP 113 (222)
T ss_dssp S-S-CEEEEEEE-B
T ss_pred c-C-ceEEeEEeee
Confidence 7 3 3678888776
No 196
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
Probab=89.66 E-value=1.6 Score=37.86 Aligned_cols=69 Identities=28% Similarity=0.378 Sum_probs=49.0
Q ss_pred cceEEEEEc-CCCCCCC-CeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeeeceEec---CCC--cEEE
Q psy11074 625 RGVYGIVTD-TYGNPLP-SAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVP---DTE--SVRL 697 (710)
Q Consensus 625 ~gI~G~V~d-~~g~pi~-~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~---~~~--~~~~ 697 (710)
.-|.|.|.| .+|.+|. +|.+++.+.. +| .+.++...+.+++.||.+...+ |.|. .|+ ...+
T Consensus 22 ~tI~~tV~da~tG~~vt~~a~vti~~~~-------~~----~~A~~a~~vtas~~~y~~~~~t-V~vpal~~Gq~a~~~v 89 (104)
T PF12985_consen 22 YTIAGTVYDAETGEDVTTTATVTISAGS-------DG----TLAAKAVTVTASKDGYMTGSVT-VNVPALKAGQFAVYPV 89 (104)
T ss_dssp EEEEEEEEETTTTEE-CGCSEEEETTCC-------CC----CE--ECCEEEEEECTCEEEEEE-EEE--B-TT-EEEEEE
T ss_pred EEEEEEEEecCCCCeeeccceEEEccCC-------Cc----ccccccEEEEEEccCCeeeEEE-EEehhhcCCceEEEee
Confidence 369999999 6899998 8888886554 33 2667888999999999999999 8876 465 4455
Q ss_pred EEEEecCc
Q psy11074 698 DFMLGKKN 705 (710)
Q Consensus 698 ~~~L~~~~ 705 (710)
+|.|++..
T Consensus 90 ~i~L~~~~ 97 (104)
T PF12985_consen 90 NIALQKEA 97 (104)
T ss_dssp EEEE-CTC
T ss_pred EEEEeecc
Confidence 88887553
No 197
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
Probab=89.40 E-value=0.95 Score=39.29 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=46.9
Q ss_pred ceeEEEEcC-CCCCCC-CcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCCcccccccceecC---CCCce--EEE
Q psy11074 221 GVYGIVTDT-YGNPLP-SAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVP---DTESV--RLD 293 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~-~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~---~~~~~--~~~ 293 (710)
-|.|.|.|. +|.+|. .|++.+.+.. +|. +.++.+++.+++.||.+.+ ..|.|. .|+.. .+|
T Consensus 23 tI~~tV~da~tG~~vt~~a~vti~~~~-------~~~----~A~~a~~vtas~~~y~~~~-~tV~vpal~~Gq~a~~~v~ 90 (104)
T PF12985_consen 23 TIAGTVYDAETGEDVTTTATVTISAGS-------DGT----LAAKAVTVTASKDGYMTGS-VTVNVPALKAGQFAVYPVN 90 (104)
T ss_dssp EEEEEEEETTTTEE-CGCSEEEETTCC-------CCC----E--ECCEEEEEECTCEEEE-EEEEE--B-TT-EEEEEEE
T ss_pred EEEEEEEecCCCCeeeccceEEEccCC-------Ccc----cccccEEEEEEccCCeeeE-EEEEehhhcCCceEEEeeE
Confidence 499999997 999998 8898886654 333 4678889999999999988 667654 46643 567
Q ss_pred EEeec
Q psy11074 294 FMLGK 298 (710)
Q Consensus 294 ~~L~~ 298 (710)
|.|++
T Consensus 91 i~L~~ 95 (104)
T PF12985_consen 91 IALQK 95 (104)
T ss_dssp EEE-C
T ss_pred EEEee
Confidence 88875
No 198
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=89.25 E-value=0.75 Score=41.02 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=44.2
Q ss_pred eeEEEEcC-CCCCCCCcEEEEeceee-------ceeeCCCceEee------eecCceeEEEEEeCCcccc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVRWNDK-------AVTVTNRGEYWR------LLARGKYVVTASAPGYEPV 277 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~g~~~-------~~~t~~~G~y~~------~l~~G~Y~l~vs~~Gy~~~ 277 (710)
|+-+|.|. .|.|.+++.|.+...+- ...||.+|.... .+++|.|+|++..-.|-..
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf~~ 72 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYFAA 72 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhhhh
Confidence 67789996 99999999999964321 367999999842 2578999999988888764
No 199
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=89.20 E-value=0.55 Score=45.33 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhhc-CCC-CCcCCcccccccccccee---EEEEeeccCCCCC
Q psy11074 122 FLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKE-GNL-NTKQKRMQDFNYVHSNCF---EITMELSCCKYPK 196 (710)
Q Consensus 122 ~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~-~~~-NR~~pg~~d~~y~~~~~~---~~t~e~~~~~~p~ 196 (710)
..+++|+.+-..|.-.-++++..++.+.|-+-|-.-.-..+ .+. ..-.| ..|+-.. +..+-+.-.|--+
T Consensus 111 kcvqylikgrkrdkvtgef~dg~rvvvyp~l~ptae~tkesetdsvdgvdp------i~wtlavqat~sdiyln~~k~v~ 184 (301)
T PF06488_consen 111 KCVQYLIKGRKRDKVTGEFIDGYRVVVYPNLTPTAEATKESETDSVDGVDP------IQWTLAVQATESDIYLNGDKKVP 184 (301)
T ss_pred HHHHHHhccccccccceeeecceEEEEecCCcccccccccccccccCCcCc------ceEEEEEEeeccceEecCCcccc
Confidence 56677777656777667889999999999988865332221 111 00001 2232111 1112222222222
Q ss_pred CcchHHHHHHhhHHHHHHHHHH------hcceeEEEEc--CCC-------CCCCCcEEEEe-------ceee---ceeeC
Q psy11074 197 ASDLKHYWAANKESLIKLIENV------HRGVYGIVTD--TYG-------NPLPSAIITVR-------WNDK---AVTVT 251 (710)
Q Consensus 197 ~~~l~~~w~~n~~al~~~~~~~------~~gi~G~V~d--~~g-------~pi~~A~i~v~-------g~~~---~~~t~ 251 (710)
+-+ .++|-...+-+..-|+.- ..-+.|-|+- +.| ....+|++.+- |.+. .+.||
T Consensus 185 ~ie-yeiwg~qakdfa~kmesglfimq~dt~LAG~vTLVAPTgntaTTst~GaaDaTAtLPtTLKdSkGaDVpVTsVITn 263 (301)
T PF06488_consen 185 AIE-YEIWGEQAKDFAKKMESGLFIMQPDTVLAGDVTLVAPTGNTATTSTKGAADATATLPTTLKDSKGADVPVTSVITN 263 (301)
T ss_pred eEE-eehhhhHHHHHHHHhhcceEEeccCceecCceEEEeccCCcceeeeccccCceEEcccccccCCCCcceeEEEEEc
Confidence 222 236766555554433321 0112222211 112 12233344331 2222 26788
Q ss_pred CCceEee--eecCceeEEEEEeCCcccccccceecCC
Q psy11074 252 NRGEYWR--LLARGKYVVTASAPGYEPVTTEPLDVPD 286 (710)
Q Consensus 252 ~~G~y~~--~l~~G~Y~l~vs~~Gy~~~~~~~v~v~~ 286 (710)
..|.--. .|.+|.|+++.||.||...+ +.+.|++
T Consensus 264 ssG~~vTNgqLsaGtYtVTySAsGY~DVT-qtlvVTD 299 (301)
T PF06488_consen 264 SSGNVVTNGQLSAGTYTVTYSASGYADVT-QTLVVTD 299 (301)
T ss_pred CCCcEeecCcccCceEEEEEecccccccc-ceEEEec
Confidence 8898844 39999999999999999999 7777754
No 200
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=88.83 E-value=1.2 Score=40.63 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=39.8
Q ss_pred CCCcEEEEeceee---ceeeCCCceE-eeeecCceeEEEEEeCCcccccccceecC
Q psy11074 234 LPSAIITVRWNDK---AVTVTNRGEY-WRLLARGKYVVTASAPGYEPVTTEPLDVP 285 (710)
Q Consensus 234 i~~A~i~v~g~~~---~~~t~~~G~y-~~~l~~G~Y~l~vs~~Gy~~~~~~~v~v~ 285 (710)
.+..+|.+.+..+ .+....+|.| +..+++|+|.|.+.+..|.=.. ..|.|.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~-~RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPP-YRVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccC-EEEEEe
Confidence 4567788876665 6788999999 6679999999999999876554 456665
No 201
>KOG1948|consensus
Probab=88.64 E-value=0.82 Score=53.18 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=47.1
Q ss_pred ceeEEEEcC-CCCCCCCcEEEEeceeeceeeCCCceE-eee-ecCceeEEEEEeCCccccc
Q psy11074 221 GVYGIVTDT-YGNPLPSAIITVRWNDKAVTVTNRGEY-WRL-LARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~~A~i~v~g~~~~~~t~~~G~y-~~~-l~~G~Y~l~vs~~Gy~~~~ 278 (710)
.+.|+|.+. .|.|+++|.|.|.| +....||..|.| ..+ +..|+|+|.+.+.-++=.+
T Consensus 317 SvtGRVl~g~~g~~l~gvvvlvng-k~~~kTdaqGyykLen~~t~gtytI~a~kehlqFst 376 (1165)
T KOG1948|consen 317 SVTGRVLVGSKGLPLSGVVVLVNG-KSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFST 376 (1165)
T ss_pred EeeeeEEeCCCCCCccceEEEEcC-cccceEcccceEEeeeeeccCcEEEEEeccceeeee
Confidence 399999997 99999999999955 556789999999 444 8889999999887665443
No 202
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=88.56 E-value=0.45 Score=48.76 Aligned_cols=92 Identities=25% Similarity=0.194 Sum_probs=56.7
Q ss_pred HHHHHCCCcEEEEeeeeec--CCceEEEEEEecCCCCCCCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHHHhcCCCh
Q psy11074 58 KTVKSYPHLVRAETIGKSV--QGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDD 135 (710)
Q Consensus 58 ~l~~~~p~~~~~~~iG~S~--eGr~i~~l~i~~~~~~~~~~~~~kp~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~ 135 (710)
.|..+.|..++...-|..+ -|+= ++++.+. ....-.+.|+||+||||..+.+++-.|+..+..++..
T Consensus 8 tl~~~~p~v~q~~~~g~~~~wl~~g--~le~~p~-------~~r~~~lvIsaGiHGNEtapvEll~kl~~~~~ag~~p-- 76 (324)
T COG2988 8 TLSGKKPVVTQREINGVRWRWLGEG--VLELTPL-------APRDGSLVISAGIHGNETAPVELLDKLQQKISAGQLP-- 76 (324)
T ss_pred hhcCCCCeeeeeccCceEEEEeccc--eeeeccC-------CCCCCceEEEecccCCccCcHHHHHHHHhhhhhcccC--
Confidence 4555677656644445443 2332 3444433 1111269999999999999999999999999887431
Q ss_pred HHHHhhcceEEEEEeccCchhhhhhhcC---CCCC
Q psy11074 136 RITQLLNSTDIYIVPSINPDGFAAAKEG---NLNT 167 (710)
Q Consensus 136 ~~~~ll~~~~i~ivP~~NPDG~~~~~~~---~~NR 167 (710)
+ ..+.. +-+-||--.+...|. |-||
T Consensus 77 -----~-a~r~L-~ilgNP~Ai~~gkRYieqDlNR 104 (324)
T COG2988 77 -----L-AWRCL-VILGNPPAIAAGKRYIEQDLNR 104 (324)
T ss_pred -----c-ceeEE-EEecCcHHHHhchHHHhhhHHH
Confidence 1 12222 236899877766553 3377
No 203
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=88.20 E-value=1.2 Score=44.51 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecc---------cceeeCCCeEE-EeeccCceEEEEEEec
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWND---------KAVTVTNRGEY-WRLLARGKYVVTASAP 677 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~---------~~~~t~~~G~f-~~~l~~G~y~l~vs~~ 677 (710)
-+..+|+ -+|+|+++|.|.+.... ...+||++|.+ +....+|.|.|.++..
T Consensus 152 ~~~~~vl-~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 152 PLPFQVL-FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred EEEEEEE-ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 3677776 78999999999987653 45899999999 7778999999998764
No 204
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=88.00 E-value=2.1 Score=37.73 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=42.3
Q ss_pred eeEEEEcCCCCCCCCcEEEEec---e------eec---eeeCCCceE-eeeecCceeEEEEEeCC
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRW---N------DKA---VTVTNRGEY-WRLLARGKYVVTASAPG 273 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g---~------~~~---~~t~~~G~y-~~~l~~G~Y~l~vs~~G 273 (710)
+.-+|.|++|+|+.+.+|++-- . ..+ ..||..|.. |+....|+|-+.+...|
T Consensus 44 VT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 44 VTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred EEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 7888999999999999999842 1 112 589999999 99999999999886444
No 205
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=87.67 E-value=1.4 Score=44.56 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=40.7
Q ss_pred eeEEEEcCCCCCCCCcEEEEe--c---------ee------eceeeCCCceE-eeeecCceeEEEEEeCC
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR--W---------ND------KAVTVTNRGEY-WRLLARGKYVVTASAPG 273 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~--g---------~~------~~~~t~~~G~y-~~~l~~G~Y~l~vs~~G 273 (710)
++|+|.|. |+|+++|+|.+. + .. ....||.+|.| +..+..|-+.+.+-..+
T Consensus 174 f~~~vl~~-GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~ 242 (264)
T COG5266 174 FRGKVLDN-GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKT 242 (264)
T ss_pred EEEEEEEC-CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeeccC
Confidence 99999998 999999999997 1 11 12689999999 56688899998875544
No 206
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=87.11 E-value=1.3 Score=39.46 Aligned_cols=55 Identities=24% Similarity=0.232 Sum_probs=43.1
Q ss_pred eEEEEEc-CCCCCCCCeEEEEeecc-------cceeeCCCeEEE------eeccCceEEEEEEecCcee
Q psy11074 627 VYGIVTD-TYGNPLPSAIITVRWND-------KAVTVTNRGEYW------RLLARGKYVVTASAPGYEP 681 (710)
Q Consensus 627 I~G~V~d-~~g~pi~~A~v~v~~~~-------~~~~t~~~G~f~------~~l~~G~y~l~vs~~Gy~~ 681 (710)
|+=.|+| ..|+|.+++.|.+...+ ....||.||+.- ..+++|.|+|++..-.|=.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf~ 71 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYFA 71 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhhh
Confidence 5667999 88999999999987532 146899999982 2257899999998777765
No 207
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=86.01 E-value=3.5 Score=41.52 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred ccceEEEEEc-CCCCCCC----CeEEEEeecc------cceeeCCCeEE-EeeccCceEEEEE-EecC---ceeeeeece
Q psy11074 624 HRGVYGIVTD-TYGNPLP----SAIITVRWND------KAVTVTNRGEY-WRLLARGKYVVTA-SAPG---YEPVTTEPL 687 (710)
Q Consensus 624 ~~gI~G~V~d-~~g~pi~----~A~v~v~~~~------~~~~t~~~G~f-~~~l~~G~y~l~v-s~~G---y~~~~~~~v 687 (710)
..+++|+|.| .+|+||. ++.|.+-... ..+....+|.| -..|=.|.|.|+. ...| +..-+.. |
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dti~-v 99 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDTIE-V 99 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE--EE-E
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCccEE-E
Confidence 3579999999 7788764 5667765443 34678999999 7778999999999 7777 6777777 8
Q ss_pred EecCCCcEEEEEEEec
Q psy11074 688 DVPDTESVRLDFMLGK 703 (710)
Q Consensus 688 ~v~~~~~~~~~~~L~~ 703 (710)
.|. | .+++||..++
T Consensus 100 ~i~-G-~t~~d~eVtP 113 (222)
T PF12866_consen 100 DIK-G-NTTQDFEVTP 113 (222)
T ss_dssp EES-S-CEEEEEEE-B
T ss_pred Eec-C-ceEEeEEeee
Confidence 887 3 3677887764
No 208
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=85.54 E-value=2.3 Score=42.99 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeec-----------------ccceeeCCCeEE-EeeccCceEEEEEEecC
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWN-----------------DKAVTVTNRGEY-WRLLARGKYVVTASAPG 678 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~-----------------~~~~~t~~~G~f-~~~l~~G~y~l~vs~~G 678 (710)
-++|+|.+. |+|+++|+|.+.-. .....||.+|.| +..+..|...+.+...+
T Consensus 173 ~f~~~vl~~-GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~ 242 (264)
T COG5266 173 VFRGKVLDN-GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKT 242 (264)
T ss_pred eEEEEEEEC-CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeeccC
Confidence 389999998 99999999998811 134689999999 88899999888775544
No 209
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=85.47 E-value=1.2 Score=43.01 Aligned_cols=38 Identities=42% Similarity=0.549 Sum_probs=31.2
Q ss_pred eeeCCCeEEEe--eccCceEEEEEEecCceeeeeeceEecC
Q psy11074 653 VTVTNRGEYWR--LLARGKYVVTASAPGYEPVTTEPLDVPD 691 (710)
Q Consensus 653 ~~t~~~G~f~~--~l~~G~y~l~vs~~Gy~~~~~~~v~v~~ 691 (710)
+++|..|.-.. .|.+|.|+++.|+.||...++. +.|+.
T Consensus 260 VITnssG~~vTNgqLsaGtYtVTySAsGY~DVTqt-lvVTD 299 (301)
T PF06488_consen 260 VITNSSGNVVTNGQLSAGTYTVTYSASGYADVTQT-LVVTD 299 (301)
T ss_pred EEEcCCCcEeecCcccCceEEEEEeccccccccce-EEEec
Confidence 56777777743 3999999999999999999998 77753
No 210
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=83.61 E-value=9.9 Score=33.69 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeec---------ccc---eeeCCCeEE-EeeccCceEEEEEEecCcee
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWN---------DKA---VTVTNRGEY-WRLLARGKYVVTASAPGYEP 681 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~---------~~~---~~t~~~G~f-~~~l~~G~y~l~vs~~Gy~~ 681 (710)
-|.=.|.|..|+|+.+.+|++... ..+ -.||..|.+ |+...-|+|.+.....+-+-
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~ 111 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGETQE 111 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCCcee
Confidence 466678999999999999988761 112 479999999 99999999998887665443
No 211
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=82.71 E-value=2.7 Score=41.85 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=40.3
Q ss_pred eeEEEEcCCCCCCCCcEEEEece---------eeceeeCCCceE-eeeecCceeEEEEEeC
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWN---------DKAVTVTNRGEY-WRLLARGKYVVTASAP 272 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~---------~~~~~t~~~G~y-~~~l~~G~Y~l~vs~~ 272 (710)
++.+|+ -+|+|+++|.|.+... ...++||.+|.+ +.+..+|.|-|.++..
T Consensus 153 ~~~~vl-~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 153 LPFQVL-FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred EEEEEE-ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 777776 6899999999998644 345899999999 4557889999998653
No 212
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=81.82 E-value=1.6 Score=39.00 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=42.3
Q ss_pred eeEEEEcC-CCCCCCCcEEEEecee--------eceeeCCCceE--ee----eecCceeEEEEEeCCccccc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVRWND--------KAVTVTNRGEY--WR----LLARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~g~~--------~~~~t~~~G~y--~~----~l~~G~Y~l~vs~~Gy~~~~ 278 (710)
|+-.|.|. .|.|.+++.|.+.... ....||.+|.. +. .+.+|.|+|++..-.|-...
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~~ 74 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDYFAAQ 74 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHHHHHT
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHhHhhc
Confidence 67789997 9999999999987555 23789999999 21 26789999999777666543
No 213
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=80.06 E-value=1.9 Score=41.49 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=32.0
Q ss_pred CeEEEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhhhhh
Q psy11074 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 161 (710)
Q Consensus 101 p~v~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~ 161 (710)
|.=+++||+||+||-.+.-++.-++ . ..+++-.+.|+| +..+|...++
T Consensus 7 p~rLFvgGlHG~Egk~t~~iL~~l~---~---------~~~~~G~l~i~p-lv~~~kYiST 54 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTSPILKRLK---P---------NDFNNGNLIIIP-LVENSKYIST 54 (193)
T ss_pred ceEEEEeeccCcchhhHHHHHHHhC---c---------ccccCceEEEEe-CCCCCCceee
Confidence 8889999999999976655443332 1 234457899999 4444554443
No 214
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=78.67 E-value=4.6 Score=36.05 Aligned_cols=55 Identities=24% Similarity=0.258 Sum_probs=42.6
Q ss_pred eEEEEEc-CCCCCCCCeEEEEeecc-------cceeeCCCeEE-E-----eeccCceEEEEEEecCcee
Q psy11074 627 VYGIVTD-TYGNPLPSAIITVRWND-------KAVTVTNRGEY-W-----RLLARGKYVVTASAPGYEP 681 (710)
Q Consensus 627 I~G~V~d-~~g~pi~~A~v~v~~~~-------~~~~t~~~G~f-~-----~~l~~G~y~l~vs~~Gy~~ 681 (710)
|+=.|.| ..|.|-++..|.+.... ....||.||+. . ..+.+|.|+|+...-.|=.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~ 71 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYFA 71 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhhh
Confidence 5567899 88999999999886532 23689999999 2 1267899999988777754
No 215
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=78.11 E-value=2.6 Score=37.60 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=39.3
Q ss_pred ceEEEEEc-CCCCCCCCeEEEEeecc--------cceeeCCCeEE--E----eeccCceEEEEEEecCc
Q psy11074 626 GVYGIVTD-TYGNPLPSAIITVRWND--------KAVTVTNRGEY--W----RLLARGKYVVTASAPGY 679 (710)
Q Consensus 626 gI~G~V~d-~~g~pi~~A~v~v~~~~--------~~~~t~~~G~f--~----~~l~~G~y~l~vs~~Gy 679 (710)
.|+=.|+| ..|.|.++..|.+.... ....||.||+. + ..+.+|.|+|+...-.|
T Consensus 2 ~iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 2 PISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp SEEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred CcEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 36667999 78999999999887544 34699999999 2 13789999999865544
No 216
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=77.07 E-value=4.9 Score=35.87 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=43.9
Q ss_pred eeEEEEcC-CCCCCCCcEEEEeceee-------ceeeCCCceEee------eecCceeEEEEEeCCcccc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVRWNDK-------AVTVTNRGEYWR------LLARGKYVVTASAPGYEPV 277 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~g~~~-------~~~t~~~G~y~~------~l~~G~Y~l~vs~~Gy~~~ 277 (710)
|+-+|.|. .|.|.+++.|.+.-... ...||.+|..-. .+.+|.|.|++..-.|-..
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~ 72 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYFAA 72 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhhhh
Confidence 67789996 99999999999864321 268999999832 2567999999988888764
No 217
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.92 E-value=9.7 Score=41.91 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=58.1
Q ss_pred eeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCC-cccccccceecCCCCceEEEEEeec
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPG-YEPVTTEPLDVPDTESVRLDFMLGK 298 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~G-y~~~~~~~v~v~~~~~~~~~~~L~~ 298 (710)
.+-++.|.+|.+++.|.+... +-...|+..|.-.+.+.||.|.+.+..-| |+... ..|.+..++...+-+++.+
T Consensus 189 ~~l~~vd~~G~gv~~~~v~~g--~e~~ets~~g~~~~e~t~g~y~~~i~~~g~ye~~~-~av~l~d~~t~dLkls~~~ 263 (513)
T COG1470 189 SKLRLVDDDGAGVPKALVKDG--NESFETSSKGNLEVEITPGKYVVLIAKKGIYEKKK-RAVKLNDGETKDLKLSVTE 263 (513)
T ss_pred EEEEEEccCCCccchheeecC--ceeEEeecccceeEEecCcceEEEeccccceecce-EEEEcCCCcccceeEEEEe
Confidence 677789999999999998774 23456788888888899999999999999 55555 7788888776555555554
No 218
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=72.46 E-value=14 Score=31.96 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=35.2
Q ss_pred cceEEEEEc-CCCCCCCCeEEEEee-cc----cceeeCCCeEEEeeccCceEEEEEE
Q psy11074 625 RGVYGIVTD-TYGNPLPSAIITVRW-ND----KAVTVTNRGEYWRLLARGKYVVTAS 675 (710)
Q Consensus 625 ~gI~G~V~d-~~g~pi~~A~v~v~~-~~----~~~~t~~~G~f~~~l~~G~y~l~vs 675 (710)
.++.-.|++ .+|+|+++|.|.+.+ .+ ...+||.+|.........-+.+.++
T Consensus 13 ~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~~~viA~ 69 (97)
T PF11974_consen 13 DGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKPFLVIAR 69 (97)
T ss_pred CCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCCEEEEEE
Confidence 345667888 889999999999987 33 3468999999943332223444444
No 219
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=72.39 E-value=15 Score=35.96 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=33.6
Q ss_pred ceEEEEEc-CCCCCCCCeEEEEeecc------------------------c-ceeeCCCeEE-EeeccCceEE
Q psy11074 626 GVYGIVTD-TYGNPLPSAIITVRWND------------------------K-AVTVTNRGEY-WRLLARGKYV 671 (710)
Q Consensus 626 gI~G~V~d-~~g~pi~~A~v~v~~~~------------------------~-~~~t~~~G~f-~~~l~~G~y~ 671 (710)
-+.|+|.| ..++||++|.|.|=..+ + ...||++|.| |+.+.||-|.
T Consensus 28 ~l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 28 TLDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 36888988 46789999888762110 0 2578999999 8889999873
No 220
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=71.75 E-value=7.5 Score=35.12 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=43.7
Q ss_pred ceeEEEEcC-CCCCCCCcEEEEecee--------eceeeCCCceEee-----eecCceeEEEEEeCCccc
Q psy11074 221 GVYGIVTDT-YGNPLPSAIITVRWND--------KAVTVTNRGEYWR-----LLARGKYVVTASAPGYEP 276 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~~A~i~v~g~~--------~~~~t~~~G~y~~-----~l~~G~Y~l~vs~~Gy~~ 276 (710)
.|+-.|.|. .|.|.+++.|.+.-.. ....||.+|.... .+.+|.|.|++..-.|-.
T Consensus 8 ~ittHVLDt~~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~ 77 (121)
T cd05821 8 PLMVKVLDAVRGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYWK 77 (121)
T ss_pred CcEEEEEECCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhhh
Confidence 388899997 9999999999984322 1378999999832 256799999997777765
No 221
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=70.98 E-value=8.5 Score=34.33 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.6
Q ss_pred eeEEEEcC-CCCCCCCcEEEEecee--------eceeeCCCceEee-----eecCceeEEEEEeCCccc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVRWND--------KAVTVTNRGEYWR-----LLARGKYVVTASAPGYEP 276 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~g~~--------~~~~t~~~G~y~~-----~l~~G~Y~l~vs~~Gy~~ 276 (710)
|+-.|.|. .|.|.+++.|.+.-.+ ....||.+|.... .+.+|.|.|++..-.|-.
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf~ 71 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYWK 71 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhHh
Confidence 67789997 9999999999985432 1268999999832 256799999997777765
No 222
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.73 E-value=2.8 Score=39.35 Aligned_cols=42 Identities=17% Similarity=0.416 Sum_probs=30.2
Q ss_pred EEeccccCCCcchHHHHHHHHHHHHHhcCCChHHHHhhcceEEEEEeccCchhhh
Q psy11074 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFA 158 (710)
Q Consensus 104 ~~~~~~Hg~E~~~~~~~~~l~~~L~~~y~~d~~~~~ll~~~~i~ivP~~NPDG~~ 158 (710)
+++||.||+||-.++-++. ++.|- + .|-++.++|.+|+--|-
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~~------~------~ng~l~Vip~v~n~~YI 59 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVLP------E------ENGVLRVIPKVENGPYI 59 (198)
T ss_pred EEEeeccCcccchhhhhhh-hcccC------c------cCceEEEEeccCCCCce
Confidence 8999999999999888776 33221 1 35778889977654443
No 223
>COG1470 Predicted membrane protein [Function unknown]
Probab=70.22 E-value=17 Score=40.05 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecC-ceeeeeeceEecCCCcEEEEEEEecC
Q psy11074 627 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPG-YEPVTTEPLDVPDTESVRLDFMLGKK 704 (710)
Q Consensus 627 I~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~G-y~~~~~~~v~v~~~~~~~~~~~L~~~ 704 (710)
.+-++.|.+|.+++.|.+...... --|+..|.-.....||.|.+.+..-| |+..... |.+..+.+..+-+.+.++
T Consensus 189 ~~l~~vd~~G~gv~~~~v~~g~e~--~ets~~g~~~~e~t~g~y~~~i~~~g~ye~~~~a-v~l~d~~t~dLkls~~~k 264 (513)
T COG1470 189 SKLRLVDDDGAGVPKALVKDGNES--FETSSKGNLEVEITPGKYVVLIAKKGIYEKKKRA-VKLNDGETKDLKLSVTEK 264 (513)
T ss_pred EEEEEEccCCCccchheeecCcee--EEeecccceeEEecCcceEEEeccccceecceEE-EEcCCCcccceeEEEEec
Confidence 555688899999999988775333 45677777777899999999999999 7777777 999888776666665544
No 224
>smart00095 TR_THY Transthyretin.
Probab=68.89 E-value=9.8 Score=34.37 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=42.9
Q ss_pred ceeEEEEcC-CCCCCCCcEEEEecee--------eceeeCCCceEee-----eecCceeEEEEEeCCccc
Q psy11074 221 GVYGIVTDT-YGNPLPSAIITVRWND--------KAVTVTNRGEYWR-----LLARGKYVVTASAPGYEP 276 (710)
Q Consensus 221 gi~G~V~d~-~g~pi~~A~i~v~g~~--------~~~~t~~~G~y~~-----~l~~G~Y~l~vs~~Gy~~ 276 (710)
.|+-.|.|. .|.|.+++.|.+.-.. ....||.+|.-.. .+.+|.|.|++..-.|-.
T Consensus 5 plTtHVLDt~~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~ 74 (121)
T smart00095 5 PLMVKVLDAVRGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYWK 74 (121)
T ss_pred CeEEEEEECCCCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhHh
Confidence 378899997 9999999999984322 1268999999832 256799999997666654
No 225
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=67.66 E-value=7.5 Score=30.58 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=14.1
Q ss_pred EE-EeeccCceEEEEEEecC
Q psy11074 660 EY-WRLLARGKYVVTASAPG 678 (710)
Q Consensus 660 ~f-~~~l~~G~y~l~vs~~G 678 (710)
.+ +.+|+||+|+|.|.+..
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEEES--SEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEEC
Confidence 55 88899999999998754
No 226
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=65.50 E-value=27 Score=31.25 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=39.0
Q ss_pred CCeEEEEeecccceeeCCCeEE-EeeccCceEEEEEEecCce---eeeeeceEecCCCcEEEEEEE
Q psy11074 640 PSAIITVRWNDKAVTVTNRGEY-WRLLARGKYVVTASAPGYE---PVTTEPLDVPDTESVRLDFML 701 (710)
Q Consensus 640 ~~A~v~v~~~~~~~~t~~~G~f-~~~l~~G~y~l~vs~~Gy~---~~~~~~v~v~~~~~~~~~~~L 701 (710)
..-.|.|.+...+. ..+|.| +..++||+|+|.++..... ....+ |++..|++.-+....
T Consensus 41 ~~~~v~vdg~~ig~--l~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~-~~~~~G~~yy~r~~~ 103 (117)
T PF11008_consen 41 VKPDVYVDGELIGE--LKNGGYFYVEVPPGKHTISAKSEFSSSPGANSLD-VTVEAGKTYYVRQDI 103 (117)
T ss_pred ccceEEECCEEEEE--eCCCeEEEEEECCCcEEEEEecCccCCCCccEEE-EEEcCCCEEEEEEEe
Confidence 34556665544433 455666 7889999999999666443 35666 788888876655443
No 227
>smart00095 TR_THY Transthyretin.
Probab=65.22 E-value=13 Score=33.52 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=42.2
Q ss_pred ceEEEEEc-CCCCCCCCeEEEEeecc--------cceeeCCCeEE--Ee---eccCceEEEEEEecCcee
Q psy11074 626 GVYGIVTD-TYGNPLPSAIITVRWND--------KAVTVTNRGEY--WR---LLARGKYVVTASAPGYEP 681 (710)
Q Consensus 626 gI~G~V~d-~~g~pi~~A~v~v~~~~--------~~~~t~~~G~f--~~---~l~~G~y~l~vs~~Gy~~ 681 (710)
.|+=.|+| ..|.|-+|..|.+.... ....||.||+. +. .+.+|.|+|+..--.|=.
T Consensus 5 plTtHVLDt~~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~ 74 (121)
T smart00095 5 PLMVKVLDAVRGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYWK 74 (121)
T ss_pred CeEEEEEECCCCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhHh
Confidence 46778999 88999999999885432 23689999999 21 356899999986665544
No 228
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=65.18 E-value=18 Score=32.18 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=42.4
Q ss_pred eEEEEEc-CCCCCCCCeEEEEeecc-------cceeeCCCeEEE------eeccCceEEEEEEecCcee
Q psy11074 627 VYGIVTD-TYGNPLPSAIITVRWND-------KAVTVTNRGEYW------RLLARGKYVVTASAPGYEP 681 (710)
Q Consensus 627 I~G~V~d-~~g~pi~~A~v~v~~~~-------~~~~t~~~G~f~------~~l~~G~y~l~vs~~Gy~~ 681 (710)
+.-.|.| ..|+|-++..|.+.... ..+.||.||+-- ..+.+|.|+|.+..--|=.
T Consensus 11 LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf~ 79 (124)
T COG2351 11 LTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYFK 79 (124)
T ss_pred eeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhhh
Confidence 6677999 88999999999775432 457899999982 2368899999987766644
No 229
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=64.37 E-value=13 Score=30.42 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCcEEEEeceeeceeeCCCceE-eeeecCc---eeEEEEE--eCCccccc-ccceecCCCCceEEEE
Q psy11074 235 PSAIITVRWNDKAVTVTNRGEY-WRLLARG---KYVVTAS--APGYEPVT-TEPLDVPDTESVRLDF 294 (710)
Q Consensus 235 ~~A~i~v~g~~~~~~t~~~G~y-~~~l~~G---~Y~l~vs--~~Gy~~~~-~~~v~v~~~~~~~~~~ 294 (710)
.+|.+++.|.... .+...-.| .+.|++| .|++++. ..| ++.+ .+.|.|..|..++++|
T Consensus 11 adAkl~v~G~~t~-~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG-~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 11 ADAKLKVDGKETN-GTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG-RILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred CCCEEEECCeEcc-cCccEEEEECCCCCCCCEEEEEEEEEEecCC-cEEEEEEEEEEcCCceEEeeC
Confidence 6789999876643 22333345 4568888 4555442 256 4332 2677888887776654
No 230
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=64.17 E-value=14 Score=32.93 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=41.3
Q ss_pred eEEEEEc-CCCCCCCCeEEEEeecc--------cceeeCCCeEEE-----eeccCceEEEEEEecCcee
Q psy11074 627 VYGIVTD-TYGNPLPSAIITVRWND--------KAVTVTNRGEYW-----RLLARGKYVVTASAPGYEP 681 (710)
Q Consensus 627 I~G~V~d-~~g~pi~~A~v~v~~~~--------~~~~t~~~G~f~-----~~l~~G~y~l~vs~~Gy~~ 681 (710)
|+=.|.| ..|.|-+|..|.+.... ....||.||+.- ..+.+|.|+|+..--.|=.
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf~ 71 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYWK 71 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhHh
Confidence 4557889 78999999999886532 236899999982 1367899999987666644
No 231
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=62.74 E-value=12 Score=36.61 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.1
Q ss_pred eeEEEEcC-CCCCCCCcEEEE
Q psy11074 222 VYGIVTDT-YGNPLPSAIITV 241 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v 241 (710)
++|.|.|. +++||++|.|.|
T Consensus 29 l~g~V~D~~~c~Pv~~a~Vdi 49 (188)
T cd03457 29 LDLQVVDVATCCPPPNAAVDI 49 (188)
T ss_pred EEEEEEeCCCCccCCCeEEEE
Confidence 89999996 789999999987
No 232
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=62.42 E-value=20 Score=31.98 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=43.4
Q ss_pred eeEEEEcC-CCCCCCCcEEEEecee-------eceeeCCCceEe-e-----eecCceeEEEEEeCCcccc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVRWND-------KAVTVTNRGEYW-R-----LLARGKYVVTASAPGYEPV 277 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~g~~-------~~~~t~~~G~y~-~-----~l~~G~Y~l~vs~~Gy~~~ 277 (710)
++-.|.|. .|.|.+++.|.+.-+. ..+.||.+|.-- . .+.+|.|+|.+.+-.|-..
T Consensus 11 LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf~~ 80 (124)
T COG2351 11 LTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYFKS 80 (124)
T ss_pred eeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhhhc
Confidence 77789996 9999999999985332 237899999873 1 2667999999987777655
No 233
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=61.57 E-value=23 Score=30.72 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=28.8
Q ss_pred eeEEEEc-CCCCCCCCcEEEEec-eee----ceeeCCCceEeee
Q psy11074 222 VYGIVTD-TYGNPLPSAIITVRW-NDK----AVTVTNRGEYWRL 259 (710)
Q Consensus 222 i~G~V~d-~~g~pi~~A~i~v~g-~~~----~~~t~~~G~y~~~ 259 (710)
+.-.|++ .+|+|+++|.|.+-+ .+. ..+||.+|.....
T Consensus 15 ~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~ 58 (97)
T PF11974_consen 15 LLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFD 58 (97)
T ss_pred EEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEec
Confidence 5556777 499999999999976 332 3689999999443
No 234
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=61.25 E-value=16 Score=33.06 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=42.8
Q ss_pred ceEEEEEc-CCCCCCCCeEEEEeecc--------cceeeCCCeEEEe-----eccCceEEEEEEecCcee
Q psy11074 626 GVYGIVTD-TYGNPLPSAIITVRWND--------KAVTVTNRGEYWR-----LLARGKYVVTASAPGYEP 681 (710)
Q Consensus 626 gI~G~V~d-~~g~pi~~A~v~v~~~~--------~~~~t~~~G~f~~-----~l~~G~y~l~vs~~Gy~~ 681 (710)
.|+=.|+| ..|.|-++..|.+.... ....||.||+.-. .+.+|.|+|+..--.|=.
T Consensus 8 ~ittHVLDt~~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf~ 77 (121)
T cd05821 8 PLMVKVLDAVRGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYWK 77 (121)
T ss_pred CcEEEEEECCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhhh
Confidence 46778999 88999999999885422 2368999999821 256899999987776654
No 235
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=61.13 E-value=35 Score=30.53 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=35.4
Q ss_pred CCCcEEEEeceeeceeeCCCceE-eeeecCceeEEEEEeCCcc---cccccceecCCCCceEE
Q psy11074 234 LPSAIITVRWNDKAVTVTNRGEY-WRLLARGKYVVTASAPGYE---PVTTEPLDVPDTESVRL 292 (710)
Q Consensus 234 i~~A~i~v~g~~~~~~t~~~G~y-~~~l~~G~Y~l~vs~~Gy~---~~~~~~v~v~~~~~~~~ 292 (710)
.....|.|.|...+- + ..|.| +..++||.|+|.++..... ... ..|.+..|+..-+
T Consensus 40 ~~~~~v~vdg~~ig~-l-~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~-l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 40 AVKPDVYVDGELIGE-L-KNGGYFYVEVPPGKHTISAKSEFSSSPGANS-LDVTVEAGKTYYV 99 (117)
T ss_pred cccceEEECCEEEEE-e-CCCeEEEEEECCCcEEEEEecCccCCCCccE-EEEEEcCCCEEEE
Confidence 455677777655543 4 44555 7789999999999655443 122 4566666665444
No 236
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=60.23 E-value=46 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCeEEEEeecc--cc-eeeCCCeEEEeecc-----CceEEEEEEecCceeeeeeceEe
Q psy11074 640 PSAIITVRWND--KA-VTVTNRGEYWRLLA-----RGKYVVTASAPGYEPVTTEPLDV 689 (710)
Q Consensus 640 ~~A~v~v~~~~--~~-~~t~~~G~f~~~l~-----~G~y~l~vs~~Gy~~~~~~~v~v 689 (710)
+|+.|.+.... ++ ..++ +|.+..+++ +|.|+|++.+..|.+..++ |+|
T Consensus 26 ~gs~ValS~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~n~~t~i~~-i~V 81 (81)
T PF03785_consen 26 PGSYVALSQDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITAFNYVTYIKT-IQV 81 (81)
T ss_dssp TT-EEEEEETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-TTB--EEEE-EEE
T ss_pred CCcEEEEecCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEEEccEEEEEE-eeC
Confidence 45555554332 33 3555 999966665 6899999999999999988 764
No 237
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=58.98 E-value=19 Score=28.20 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=19.4
Q ss_pred Eeceeec-eeeCCCc-eE-eeeecCceeEEEEEeCC
Q psy11074 241 VRWNDKA-VTVTNRG-EY-WRLLARGKYVVTASAPG 273 (710)
Q Consensus 241 v~g~~~~-~~t~~~G-~y-~~~l~~G~Y~l~vs~~G 273 (710)
+.|.+.. +...... .+ +..|+||+|+|.|.+..
T Consensus 14 l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 14 LEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EETTESSEEEESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred EECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 4555543 3334444 55 66799999999986643
No 238
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=56.73 E-value=37 Score=28.82 Aligned_cols=51 Identities=25% Similarity=0.254 Sum_probs=33.5
Q ss_pred ceeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceE--eeeecCceeEEEEEeCCc
Q psy11074 221 GVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY--WRLLARGKYVVTASAPGY 274 (710)
Q Consensus 221 gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y--~~~l~~G~Y~l~vs~~Gy 274 (710)
+-.=.+.|.+|.|.++..|.....- +.. .+|.= +..|+||+|+|++..-.+
T Consensus 21 gh~hlliD~~~~~~~~~~I~~~~n~--vhy-~~Gqte~~I~L~PG~htLtl~~~d~ 73 (87)
T PF14347_consen 21 GHHHLLIDGDGPPLANEPIPFNING--VHY-GKGQTELNIELPPGKHTLTLQLGDG 73 (87)
T ss_pred ccEEEEECCCCCcCCCCeeeecCCe--EEe-CCCEEEEEEEeCCCCEEEEEEeCCC
Confidence 3445678888988988888763211 111 45544 345999999999865444
No 239
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=55.16 E-value=45 Score=28.31 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=37.6
Q ss_pred cceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEE--EeeccCceEEEEEEecCceeee
Q psy11074 625 RGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY--WRLLARGKYVVTASAPGYEPVT 683 (710)
Q Consensus 625 ~gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f--~~~l~~G~y~l~vs~~Gy~~~~ 683 (710)
.|-.-.+.|.++.|.++..|....... -. .+|.= ...|+||+|+|++...-+....
T Consensus 20 tgh~hlliD~~~~~~~~~~I~~~~n~v--hy-~~Gqte~~I~L~PG~htLtl~~~d~~h~~ 77 (87)
T PF14347_consen 20 TGHHHLLIDGDGPPLANEPIPFNINGV--HY-GKGQTELNIELPPGKHTLTLQLGDGDHVP 77 (87)
T ss_pred CccEEEEECCCCCcCCCCeeeecCCeE--Ee-CCCEEEEEEEeCCCCEEEEEEeCCCCccc
Confidence 355667889888889888887643221 11 34433 5669999999998776655443
No 240
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=53.70 E-value=28 Score=29.96 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEecee--------eceeeCCCceEeeeecC
Q psy11074 231 GNPLPSAIITVRWND--------KAVTVTNRGEYWRLLAR 262 (710)
Q Consensus 231 g~pi~~A~i~v~g~~--------~~~~t~~~G~y~~~l~~ 262 (710)
..||++|+|.|+-.+ ...+||.+|.|...|+.
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~ 57 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPS 57 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecC
Confidence 579999999997444 23789999999666554
No 241
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=52.24 E-value=44 Score=27.77 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCcEEEEe--ceeec-eeeCCCceEeeeec-----CceeEEEEEeCCcccccccceec
Q psy11074 235 PSAIITVR--WNDKA-VTVTNRGEYWRLLA-----RGKYVVTASAPGYEPVTTEPLDV 284 (710)
Q Consensus 235 ~~A~i~v~--g~~~~-~~t~~~G~y~~~l~-----~G~Y~l~vs~~Gy~~~~~~~v~v 284 (710)
+++.|.+. |.-++ ..++ .|.+...++ +|.|+|++.+.-|.+.. +.|.|
T Consensus 26 ~gs~ValS~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~n~~t~i-~~i~V 81 (81)
T PF03785_consen 26 PGSYVALSQDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITAFNYVTYI-KTIQV 81 (81)
T ss_dssp TT-EEEEEETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-TTB--EE-EEEEE
T ss_pred CCcEEEEecCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEEEccEEEE-EEeeC
Confidence 34444443 44455 3455 999966665 58999999999999987 66553
No 242
>KOG3006|consensus
Probab=51.83 E-value=41 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=37.3
Q ss_pred ceEEEEEc-CCCCCCCCeEEEEeec-------cc-ceeeCCCeEE-Ee----eccCceEEEEEEe
Q psy11074 626 GVYGIVTD-TYGNPLPSAIITVRWN-------DK-AVTVTNRGEY-WR----LLARGKYVVTASA 676 (710)
Q Consensus 626 gI~G~V~d-~~g~pi~~A~v~v~~~-------~~-~~~t~~~G~f-~~----~l~~G~y~l~vs~ 676 (710)
.|..+|.| ..|.|-.|+.|-+--. .. ...|+++|+- |. .+-||.|++.+.-
T Consensus 22 ~itahVLd~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT 86 (132)
T KOG3006|consen 22 PITAHVLDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDT 86 (132)
T ss_pred CcEeEEeecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEec
Confidence 58999999 6788988888755321 11 2478999998 53 2789999998753
No 243
>KOG3006|consensus
Probab=49.98 E-value=40 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=39.4
Q ss_pred eeEEEEcC-CCCCCCCcEEEEe---ce----eec-eeeCCCceE-eee----ecCceeEEEEEeCCc
Q psy11074 222 VYGIVTDT-YGNPLPSAIITVR---WN----DKA-VTVTNRGEY-WRL----LARGKYVVTASAPGY 274 (710)
Q Consensus 222 i~G~V~d~-~g~pi~~A~i~v~---g~----~~~-~~t~~~G~y-~~~----l~~G~Y~l~vs~~Gy 274 (710)
|.-+|.|. .|.|..|+.|.+- +. ..+ ..|+++|.- |.. +.||.|++.+...-|
T Consensus 23 itahVLd~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 23 ITAHVLDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred cEeEEeecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 89999996 8999999988763 21 112 578999988 532 789999998754444
No 244
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=49.60 E-value=29 Score=27.55 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEEEeeccCceEEEEEEecCceeeeee
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTE 685 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~ 685 (710)
+..-.+++.+|..++...+.+.+ .+..-.+|.|.|++++.| .+.+.+
T Consensus 18 ~~~v~at~~dG~~~~~~~~~vs~------------~~d~~~~G~y~Vt~~y~~-~t~t~~ 64 (67)
T PF07523_consen 18 GLFVTATYSDGTSLPLSDVTVSG------------TVDTSKAGTYTVTYTYKG-VTATFT 64 (67)
T ss_dssp CHEEEEEETTS-ES-GCCSEEES---------------TTS-CCEEEEEEECT-EEEEEE
T ss_pred CCEEEEEEcCCCEeceeeeEEEe------------eeecCCCceEEEEEEECC-EEEEEE
Confidence 34445667888876655555554 122358999999999999 444444
No 245
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=49.32 E-value=59 Score=26.71 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=37.0
Q ss_pred CCeEEEEeecccceeeCCCeEE-EeeccCce-EEEEEEe----cCcee--eeeeceEecCCCcEEEEE
Q psy11074 640 PSAIITVRWNDKAVTVTNRGEY-WRLLARGK-YVVTASA----PGYEP--VTTEPLDVPDTESVRLDF 699 (710)
Q Consensus 640 ~~A~v~v~~~~~~~~t~~~G~f-~~~l~~G~-y~l~vs~----~Gy~~--~~~~~v~v~~~~~~~~~~ 699 (710)
++|.+.+.|... ..+...-.| -+.|++|. |.-++.+ .| +. .+++ |.+..|+..+++|
T Consensus 11 adAkl~v~G~~t-~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG-~~~t~~~~-V~vrAGd~~~v~f 75 (75)
T TIGR03000 11 ADAKLKVDGKET-NGTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG-RILTRTRT-VVVRAGDTVTVDF 75 (75)
T ss_pred CCCEEEECCeEc-ccCccEEEEECCCCCCCCEEEEEEEEEEecCC-cEEEEEEE-EEEcCCceEEeeC
Confidence 789999977653 233444566 56799995 5544444 66 33 3445 8888888887765
No 246
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=46.98 E-value=18 Score=28.70 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=25.7
Q ss_pred ceeEEEEcCCCCCCCCcEEEEeceeeceeeCCCceEeeeecCceeEEEEEeCC
Q psy11074 221 GVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPG 273 (710)
Q Consensus 221 gi~G~V~d~~g~pi~~A~i~v~g~~~~~~t~~~G~y~~~l~~G~Y~l~vs~~G 273 (710)
+..-.+++++|..++...+.+.| . | ..-.+|.|+|++++.|
T Consensus 18 ~~~v~at~~dG~~~~~~~~~vs~---~--------~-d~~~~G~y~Vt~~y~~ 58 (67)
T PF07523_consen 18 GLFVTATYSDGTSLPLSDVTVSG---T--------V-DTSKAGTYTVTYTYKG 58 (67)
T ss_dssp CHEEEEEETTS-ES-GCCSEEES---------------TTS-CCEEEEEEECT
T ss_pred CCEEEEEEcCCCEeceeeeEEEe---e--------e-ecCCCceEEEEEEECC
Confidence 34455777888887766666655 1 1 1237899999999998
No 247
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=45.81 E-value=29 Score=29.90 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEeecc--------cceeeCCCeEEEeeccC
Q psy11074 636 GNPLPSAIITVRWND--------KAVTVTNRGEYWRLLAR 667 (710)
Q Consensus 636 g~pi~~A~v~v~~~~--------~~~~t~~~G~f~~~l~~ 667 (710)
..||+||.|.|.... ....||++|.|...|+.
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~ 57 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPS 57 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecC
Confidence 579999999999765 23689999999766654
No 248
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=45.56 E-value=3 Score=33.91 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=30.7
Q ss_pred CcccccCCcc---eeeeecccccccccccccccCCcccccccccCCCccc
Q psy11074 302 FSIDQLKNPF---IEIMTLIVPSLSLLLCHVTLSTAADYYFDFDDLTGLE 348 (710)
Q Consensus 302 ~~~~~~~~p~---v~~~v~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (710)
.++|||+.|. -...++.+|+....+........+++.+.++|++.++
T Consensus 21 ~~~dfW~~~~~~~~~~dv~V~p~~~~~f~~~L~~~~i~~~v~i~dvq~~I 70 (74)
T PF02244_consen 21 NELDFWKEPSSVGRPVDVMVPPEKLEEFEELLKEHGIEYEVLIEDVQKLI 70 (74)
T ss_dssp STEEEEESSSSTTSEEEEEEEGGGHHHHHHHHHHTT-EEEEEES-HHHHH
T ss_pred cceeeecCCCCCCCeEEEEECHHHHHHHHHHHHHCCCcEEEEeHHHHHHH
Confidence 5689999988 3334555777666666555566677778888876654
No 249
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=39.55 E-value=1.5e+02 Score=25.11 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=27.9
Q ss_pred eEEEEEcCC--CCCCCCeEE--EEeecc------cce-eeCCCeEE---Ee---eccCceEEEEEEec
Q psy11074 627 VYGIVTDTY--GNPLPSAII--TVRWND------KAV-TVTNRGEY---WR---LLARGKYVVTASAP 677 (710)
Q Consensus 627 I~G~V~d~~--g~pi~~A~v--~v~~~~------~~~-~t~~~G~f---~~---~l~~G~y~l~vs~~ 677 (710)
+++.+.+.+ ..+..+..+ .|.+.+ ... .++..|.| +. ..+.|.|+|++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 19 FRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred EEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 566666654 234444333 444332 223 46788888 22 14679999999883
No 250
>PF13115 YtkA: YtkA-like
Probab=35.17 E-value=1.2e+02 Score=25.02 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.1
Q ss_pred EcCCCCCCCCeEEEEeec
Q psy11074 632 TDTYGNPLPSAIITVRWN 649 (710)
Q Consensus 632 ~d~~g~pi~~A~v~v~~~ 649 (710)
.+.+|+|+.+|.|.+.-.
T Consensus 28 ~~~~g~pv~~a~V~~~~~ 45 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIW 45 (86)
T ss_pred ECCCCCCCCCCEEEEEEE
Confidence 678999999999988643
No 251
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=31.25 E-value=1.3e+02 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCCCCeEEEEeecccceeeCCCe--EE-Ee-------eccCceEEEEEEec
Q psy11074 626 GVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRG--EY-WR-------LLARGKYVVTASAP 677 (710)
Q Consensus 626 gI~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G--~f-~~-------~l~~G~y~l~vs~~ 677 (710)
.++-.|.|.+|+.| .++.+... ..| .| |. .+|+|.|+++|.+.
T Consensus 26 ~v~v~I~d~~G~~V--~t~~~~~~-------~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 26 NVTVTIYDSNGQVV--RTISLGSQ-------SAGEHSFTWDGKDDDGNPVPDGTYTFRVTAT 78 (81)
T ss_dssp EEEEEEEETTS-EE--EEEEEEEC-------SSEEEEEEE-SB-TTS-B--SEEEEEEEEEE
T ss_pred EEEEEEEcCCCCEE--EEEEcCCc-------CCceEEEEECCCCCCcCCCCCCCEEEEEEEE
Confidence 35667888888776 23333211 123 23 43 68999999998763
No 252
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.32 E-value=73 Score=23.67 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.4
Q ss_pred eeEEEEcCCCCCCCCcEEEEe
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR 242 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~ 242 (710)
++-.++|..|.|++++.+.+.
T Consensus 17 ltVt~kda~G~pv~n~~f~l~ 37 (47)
T PF05688_consen 17 LTVTVKDANGNPVPNAPFTLT 37 (47)
T ss_pred EEEEEECCCCCCcCCceEEEE
Confidence 677788999999999998884
No 253
>PF13115 YtkA: YtkA-like
Probab=29.27 E-value=1.7e+02 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.7
Q ss_pred eeEEEEcCCCCCCCCcEEEEece
Q psy11074 222 VYGIVTDTYGNPLPSAIITVRWN 244 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~g~ 244 (710)
|.-. .|.+|+|+.+|.|.+...
T Consensus 24 i~v~-~~~~g~pv~~a~V~~~~~ 45 (86)
T PF13115_consen 24 ITVT-VDQGGKPVTDADVQFEIW 45 (86)
T ss_pred EEEE-ECCCCCCCCCCEEEEEEE
Confidence 4334 678999999999988643
No 254
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=28.56 E-value=41 Score=26.72 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.2
Q ss_pred cCceeEEEEEeCCccccc
Q psy11074 261 ARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 261 ~~G~Y~l~vs~~Gy~~~~ 278 (710)
..|.|+|++.|.||.+.+
T Consensus 45 ~~G~~~I~I~A~GY~d~~ 62 (65)
T PF07550_consen 45 KDGENTIVIKATGYKDKT 62 (65)
T ss_pred cCCceEEEEEeCCccceE
Confidence 578999999999998876
No 255
>KOG4659|consensus
Probab=27.87 E-value=1.6e+02 Score=37.09 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=62.2
Q ss_pred hccccceEEEEEcCCCCCCCCeEEEEeec-ccceeeCCCeEE-EeeccCceEEEEEEecCceeeeeeceEecCCCcEEEE
Q psy11074 621 ENVHRGVYGIVTDTYGNPLPSAIITVRWN-DKAVTVTNRGEY-WRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLD 698 (710)
Q Consensus 621 ~q~~~gI~G~V~d~~g~pi~~A~v~v~~~-~~~~~t~~~G~f-~~~l~~G~y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~ 698 (710)
+.-..-|+|.|.-..|.|+.|+.|+-... ...+.|-++|.| +.-.--++-+|.+--.-|+++.+. |.|+-++...+|
T Consensus 48 e~~~~vIrgrvv~~~~~pLVGVrVS~~~~~~yfTlTR~DG~FDL~vnGg~svtLqF~R~pF~~qkr~-v~vpwnq~i~id 126 (1899)
T KOG4659|consen 48 ENRISVIRGRVVWGGGVPLVGVRVSDAAHPLYFTLTREDGYFDLTVNGGRSVTLQFLRTPFQSQKRS-VFVPWNQIIHID 126 (1899)
T ss_pred cccceEEeccEeecCCcceEEEEeecccccceEEEEecCceEEEEEcccceEEEEEccCCCccccee-EEeChhhEEEEE
Confidence 33355799999999999998888765432 346889999999 444445578888888899999999 999988877774
Q ss_pred -EEEec
Q psy11074 699 -FMLGK 703 (710)
Q Consensus 699 -~~L~~ 703 (710)
++|..
T Consensus 127 ~vvm~~ 132 (1899)
T KOG4659|consen 127 DVVMYR 132 (1899)
T ss_pred eEEEEe
Confidence 44443
No 256
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=26.80 E-value=1.3e+02 Score=24.93 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-ceeeceeeC---CCceEeeeecCceeEEEEEe
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-WNDKAVTVT---NRGEYWRLLARGKYVVTASA 271 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-g~~~~~~t~---~~G~y~~~l~~G~Y~l~vs~ 271 (710)
++-.|.|++|+.|....+--. .-.+.+.-| .+|. .+|+|.|++++.+
T Consensus 27 v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~---~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 27 VTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGN---PVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS----B--SEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcC---CCCCCCEEEEEEE
Confidence 566688888875532221110 001111111 2222 5899999999875
No 257
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=26.75 E-value=2.5e+02 Score=24.86 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCcEEEEeceeeceeeCCCceE--eeeecCceeEEEEEeCCcccc-----cccceecCCCCceEE
Q psy11074 235 PSAIITVRWNDKAVTVTNRGEY--WRLLARGKYVVTASAPGYEPV-----TTEPLDVPDTESVRL 292 (710)
Q Consensus 235 ~~A~i~v~g~~~~~~t~~~G~y--~~~l~~G~Y~l~vs~~Gy~~~-----~~~~v~v~~~~~~~~ 292 (710)
+...|++.|.... .-=..|.. +..+++|.|+|.+...|=.+. ....+.+..++..++
T Consensus 14 ~~vdv~~dg~~~~-~~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl 77 (122)
T PF14344_consen 14 PAVDVYVDGTKVF-SNVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTL 77 (122)
T ss_pred ccEEEEECCEEEE-ccCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEE
Confidence 4556777554421 11222333 356999999999987776632 124555666654443
No 258
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=26.49 E-value=2.8e+02 Score=28.85 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=35.8
Q ss_pred CCCCeEEEE-eeccc-c-eeeC--CC-eEEE-e---eccCc-eEEEEEEecCceeeeeeceEecCC
Q psy11074 638 PLPSAIITV-RWNDK-A-VTVT--NR-GEYW-R---LLARG-KYVVTASAPGYEPVTTEPLDVPDT 692 (710)
Q Consensus 638 pi~~A~v~v-~~~~~-~-~~t~--~~-G~f~-~---~l~~G-~y~l~vs~~Gy~~~~~~~v~v~~~ 692 (710)
++.+|+|.| .+... . .... .. |.|+ . ...+| +|+|+|+..|.+..+.+ .++...
T Consensus 59 ~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~~~~~sa~-~~vp~~ 123 (298)
T PF14054_consen 59 PVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPGGKTYSAE-TTVPPP 123 (298)
T ss_pred ccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECCCCEEEEE-EEECCC
Confidence 389999999 43321 1 1112 21 7785 1 35677 59999999888888887 666543
No 259
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=26.25 E-value=77 Score=24.56 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=25.4
Q ss_pred eeeCCCceEeeeecCceeEEEEEeCCccccc
Q psy11074 248 VTVTNRGEYWRLLARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 248 ~~t~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~ 278 (710)
+.-|..|.|...|....-.+.+++.||....
T Consensus 7 i~kdk~Ge~rfrlkA~N~eiI~~sEgY~ska 37 (59)
T COG3422 7 IYKDKAGEYRFRLKAANGEIILTSEGYKSKA 37 (59)
T ss_pred EEEcCCCcEEEEEEccCccEEEeecccchhH
Confidence 5668999996667787788888889999875
No 260
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=25.52 E-value=66 Score=25.50 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.3
Q ss_pred cCceEEEEEEecCceeeeee
Q psy11074 666 ARGKYVVTASAPGYEPVTTE 685 (710)
Q Consensus 666 ~~G~y~l~vs~~Gy~~~~~~ 685 (710)
..|.|+|+|.+.||+..+..
T Consensus 45 ~~G~~~I~I~A~GY~d~~~~ 64 (65)
T PF07550_consen 45 KDGENTIVIKATGYKDKTFT 64 (65)
T ss_pred cCCceEEEEEeCCccceEEE
Confidence 67999999999999887654
No 261
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=25.51 E-value=1.9e+02 Score=24.48 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCCCCCeEEEEeecccceeeCCCeEE---EeeccCceEEEEEEecCc
Q psy11074 627 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY---WRLLARGKYVVTASAPGY 679 (710)
Q Consensus 627 I~G~V~d~~g~pi~~A~v~v~~~~~~~~t~~~G~f---~~~l~~G~y~l~vs~~Gy 679 (710)
+.-.|++++|..++ + .+.-..+|.| |..-.+|.|+|.|...|-
T Consensus 34 ~~v~i~~p~g~~~~---~-------~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~ 79 (93)
T smart00557 34 LEVEVTGPSGKKVP---V-------EVKDNGDGTYTVSYTPTEPGDYTVTVKFGGE 79 (93)
T ss_pred EEEEEECCCCCeeE---e-------EEEeCCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 66667777764332 1 2344667888 666788999999998873
No 262
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=24.63 E-value=2.1e+02 Score=26.27 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=33.1
Q ss_pred eeEEEEcCCCCCCCCcEEEEe-------ce--eeceeeCCCceEee---eecCceeEEEE
Q psy11074 222 VYGIVTDTYGNPLPSAIITVR-------WN--DKAVTVTNRGEYWR---LLARGKYVVTA 269 (710)
Q Consensus 222 i~G~V~d~~g~pi~~A~i~v~-------g~--~~~~~t~~~G~y~~---~l~~G~Y~l~v 269 (710)
+.-.++|.+|.|+.++.+.+. +. +........|.|.- .+++|.|.|.+
T Consensus 71 ~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 71 LTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred EEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 777788899999999988883 11 12244567777743 24668887776
No 263
>PHA00691 hypothetical protein
Probab=24.21 E-value=94 Score=23.80 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.8
Q ss_pred eCCCeEEEeeccCceEEEEEEecCceeeeee
Q psy11074 655 VTNRGEYWRLLARGKYVVTASAPGYEPVTTE 685 (710)
Q Consensus 655 t~~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~ 685 (710)
.-++|.||.+-+.|.|++-||.+-..+....
T Consensus 9 ~~ENGr~WVL~K~~~Y~V~vSG~THST~DS~ 39 (68)
T PHA00691 9 AYENGRVWVLKKSDSYTVFVSGVTHSTSDST 39 (68)
T ss_pred hccCCeEEEEEeCCcEEEEEecccccccccc
Confidence 3578999988899999999987755554433
No 264
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=24.20 E-value=2.8e+02 Score=23.42 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=29.5
Q ss_pred eeEEEEcCC--CCCCCCcEEEEe-----ceee---ce-eeCCCceEee--ee----cCceeEEEEEeC
Q psy11074 222 VYGIVTDTY--GNPLPSAIITVR-----WNDK---AV-TVTNRGEYWR--LL----ARGKYVVTASAP 272 (710)
Q Consensus 222 i~G~V~d~~--g~pi~~A~i~v~-----g~~~---~~-~t~~~G~y~~--~l----~~G~Y~l~vs~~ 272 (710)
+++.+.+.+ ..+..+..+.+. |... .. .++..|.|.. .| +.|.|+|.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 19 FRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred EEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 677777766 345555544442 2211 24 5688998832 23 359999999773
No 265
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=24.18 E-value=2.9e+02 Score=25.34 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=33.6
Q ss_pred cceEEEEEcCCCCCCCCeEEEEeecc---------cceeeCCCeEEEe---eccCceEEEEE
Q psy11074 625 RGVYGIVTDTYGNPLPSAIITVRWND---------KAVTVTNRGEYWR---LLARGKYVVTA 674 (710)
Q Consensus 625 ~gI~G~V~d~~g~pi~~A~v~v~~~~---------~~~~t~~~G~f~~---~l~~G~y~l~v 674 (710)
..+.-.++|.+|.|+.++.+++.=.. .......+|.|.. .+++|.+.|.+
T Consensus 69 ~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 69 NSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred CeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 35677788899999999998884221 2234566777732 34677777776
No 266
>PHA00691 hypothetical protein
Probab=23.91 E-value=86 Score=24.00 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.8
Q ss_pred CCCceEeeeecCceeEEEEEeC
Q psy11074 251 TNRGEYWRLLARGKYVVTASAP 272 (710)
Q Consensus 251 ~~~G~y~~~l~~G~Y~l~vs~~ 272 (710)
.++|.||-+-..|.|++.+|..
T Consensus 10 ~ENGr~WVL~K~~~Y~V~vSG~ 31 (68)
T PHA00691 10 YENGRVWVLKKSDSYTVFVSGV 31 (68)
T ss_pred ccCCeEEEEEeCCcEEEEEecc
Confidence 5789999888999999998643
No 267
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=23.73 E-value=56 Score=24.39 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=20.0
Q ss_pred CCCceEeeeecCceeEEEEEeCCccccc
Q psy11074 251 TNRGEYWRLLARGKYVVTASAPGYEPVT 278 (710)
Q Consensus 251 ~~~G~y~~~l~~G~Y~l~vs~~Gy~~~~ 278 (710)
|.+|.|+..|..+.-.+.+++.||.+..
T Consensus 1 d~~g~~~f~L~a~ng~viasse~Y~sk~ 28 (49)
T PF07411_consen 1 DSDGQFRFRLKAGNGEVIASSEGYSSKA 28 (49)
T ss_dssp ETTSEEEEEEE-TTS-EEEEBEEBSSHH
T ss_pred CCCCCEEEEEEcCCCCEEEecCCcCCHH
Confidence 4678885556677777888999999874
No 268
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=22.99 E-value=1.4e+02 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred EEEcCCCCCCCC-eEEEEeecccceeeCCCeEE-Eeecc
Q psy11074 630 IVTDTYGNPLPS-AIITVRWNDKAVTVTNRGEY-WRLLA 666 (710)
Q Consensus 630 ~V~d~~g~pi~~-A~v~v~~~~~~~~t~~~G~f-~~~l~ 666 (710)
++++.+|+|||. |.|.-...........+|.- ++.++
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~ 40 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLP 40 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE-
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCC
Confidence 467889988775 66665545555667888877 44454
No 269
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.18 E-value=2.2e+02 Score=34.09 Aligned_cols=58 Identities=31% Similarity=0.330 Sum_probs=43.3
Q ss_pred eEEEEEc-CCCCCCCCeEEEEeecc---cceeeCCCeEEEee--ccCce-EEEEEEecCceeeee
Q psy11074 627 VYGIVTD-TYGNPLPSAIITVRWND---KAVTVTNRGEYWRL--LARGK-YVVTASAPGYEPVTT 684 (710)
Q Consensus 627 I~G~V~d-~~g~pi~~A~v~v~~~~---~~~~t~~~G~f~~~--l~~G~-y~l~vs~~Gy~~~~~ 684 (710)
++-.|.| .+-+||++|.|.|-+.. ...+|+.+|.-+.. ..+|. .+|+++..||-+...
T Consensus 3 lKV~V~d~~t~qpl~~A~V~V~~N~t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 3 LKVQVSDASTRQPLSDASVEVFGNQTLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred EEEEEecccCcccCCCCeEEEEeceeEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCC
Confidence 5667888 66789999999886643 34578999987433 56776 678999999977543
Done!