RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11074
(710 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 384 bits (987), Expect = e-127
Identities = 172/421 (40%), Positives = 244/421 (57%), Gaps = 43/421 (10%)
Query: 319 VPSLSLLLCHVTLSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYP 378
+P+L LL + ++ A T ED + Y + +L+ K+YP
Sbjct: 1 MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESF--LQQPHYASQEQLEDLFAGLEKAYP 58
Query: 379 HLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 438
+ + +G+S++GRNL A++I+ N R L+ P KY+ANMHGDETVG L+V++
Sbjct: 59 NQAKVHFLGRSLEGRNLLALQIS---RNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMA 115
Query: 439 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNR 498
QYL+ + + QL+NSTDIY+VP++NPDG+A ++EG C+SL YVGR NA +DLNR
Sbjct: 116 QYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNR 175
Query: 499 NFPDQFE----YEAKKVY-EPETQAIMNFIYSNPFVLSGNLHGGA--------------- 538
+FPD+ E ++ + +PET A++N+I S PFVLS N HGGA
Sbjct: 176 DFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNE 235
Query: 539 ---------------VARDYASRNPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYV 583
+A Y+ +P+M G+ C F GITNG +WY+++GGMQDFNY
Sbjct: 236 CCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYA 295
Query: 584 HSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAI 643
SNCFE+T+ELSCCKYP AS L W NK SL++L+ H G+ G+VTD G P+ A
Sbjct: 296 FSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADAN 355
Query: 644 ITVR-WNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVP--DTESVRLDFM 700
+ V +K + + RGEYWRLL G Y V ASA GY+ + + V + E++RLDF
Sbjct: 356 VYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFK 415
Query: 701 L 701
L
Sbjct: 416 L 416
Score = 152 bits (385), Expect = 4e-40
Identities = 66/145 (45%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 172 MQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYG 231
MQDFNY SNCFE+T+ELSCCKYP AS L W NK SL++L+ H G+ G+VTD G
Sbjct: 289 MQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASG 348
Query: 232 NPLPSAIITVR-WNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVP--DTE 288
P+ A + V +K + + RGEYWRLL G Y V ASA GY+ + + V + E
Sbjct: 349 FPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQE 408
Query: 289 SVRLDFMLG--KKNAFSIDQLKNPF 311
++RLDF L + N I +P+
Sbjct: 409 ALRLDFKLAPVETNFDGISSFYSPY 433
Score = 150 bits (379), Expect = 2e-39
Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 5 VPSLSLLLCHVTLSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYP 64
+P+L LL + ++ A T ED + Y + +L+ K+YP
Sbjct: 1 MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESF--LQQPHYASQEQLEDLFAGLEKAYP 58
Query: 65 HLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124
+ + +G+S++GRNL A++I+ + R L+ P KY+ANMHGDETVG L+V++
Sbjct: 59 NQAKVHFLGRSLEGRNLLALQIS---RNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMA 115
Query: 125 QYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164
QYL+ + + QL+NSTDIY+VP++NPDG+A ++EGN
Sbjct: 116 QYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGN 155
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 367 bits (943), Expect = e-121
Identities = 155/379 (40%), Positives = 221/379 (58%), Gaps = 42/379 (11%)
Query: 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFK 418
R+++ ++++ F+ + YP + R ++GKSV+ R L+ +EI+ DNP +P FK
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEIS---DNPGIHEAGEPEFK 65
Query: 419 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGK 478
Y+ NMHG+E VG L++ LI+YL G D +T L+ ST I+I+PS+NPDG+ ++EG
Sbjct: 66 YIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 125
Query: 479 CDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGG- 537
G VGR N++ DLNRNFPDQF +PET A+M+++ + PFVLS NLHGG
Sbjct: 126 R---GGTVGRNNSNNYDLNRNFPDQFFQVTDPP-QPETLAVMSWLKTYPFVLSANLHGGS 181
Query: 538 ---------------------------AVARDYASRNPMMAPGHAC-----GFDFKDGIT 565
+A Y+ N M G C F GIT
Sbjct: 182 LVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGIT 241
Query: 566 NGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHR 625
NG WY V GGMQD+NY+++NCFE+T+EL C KYPKA +L YW N+ SL++ I+ VHR
Sbjct: 242 NGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHR 301
Query: 626 GVYGIVTDTY-GNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTT 684
G++G V D G + +A I+V + VT G+YWRLL +G Y VTASA GY+PVT
Sbjct: 302 GIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASARGYDPVTK 361
Query: 685 EPLDVPDTESVRLDFMLGK 703
++V V+++F L +
Sbjct: 362 T-VEVDSKGGVQVNFTLSR 379
Score = 151 bits (383), Expect = 2e-40
Identities = 60/128 (46%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 172 MQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTY- 230
MQD+NY+++NCFE+T+EL C KYPKA +L YW N+ SL++ I+ VHRG++G V D
Sbjct: 253 MQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWGFVLDATD 312
Query: 231 GNPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESV 290
G + +A I+V + VT G+YWRLL +G Y VTASA GY+PVT ++V V
Sbjct: 313 GRGILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASARGYDPVTKT-VEVDSKGGV 371
Query: 291 RLDFMLGK 298
+++F L +
Sbjct: 372 QVNFTLSR 379
Score = 144 bits (366), Expect = 5e-38
Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
R+++ ++++ F+ + YP + R ++GKSV+ R L+ +EI+ D+P +P FK
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEIS---DNPGIHEAGEPEFK 65
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164
Y+ NMHG+E VG L++ LI+YL G D +T L+ ST I+I+PS+NPDG+ ++EG+
Sbjct: 66 YIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 125
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 362 bits (931), Expect = e-119
Identities = 153/405 (37%), Positives = 222/405 (54%), Gaps = 57/405 (14%)
Query: 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFK 418
R++ +L + K P + R +IG+SV+GR+L+ +E + D+P ++P K
Sbjct: 5 RHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFS---DHPGIHEPLEPEVK 61
Query: 419 YVANMHGDETVGYALMVFLIQYLVLK-DGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 477
YV NMHG+E +G LM+ L ++L + ++ RI QL+ T I+I+PS+NPDG+ A
Sbjct: 62 YVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQ 121
Query: 478 KCDSLDGYVGRKNAHGVDLNRNFPDQFEY------------------EAKKVYEPETQAI 519
+ VGR NA+GVDLNRNFPD Y K EPET+A+
Sbjct: 122 GPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAV 181
Query: 520 MNFIYSNPFVLSGNLHGGA----------------------------------VARDYAS 545
+ +++S FVLS NLHGGA +A+ Y+
Sbjct: 182 IRWMHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSY 241
Query: 546 RNPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDL 605
+ M G CG F DGITNG WY ++ GMQDFNY+H+NCFEIT+ELSC K+P +L
Sbjct: 242 AHGWMFQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEEL 301
Query: 606 KHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEYWRLL 665
+ W NKE+LI+ +E VH+G+ G+V D N L +A+I+V + VT + G+Y+RLL
Sbjct: 302 QREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAVISVSGINHDVTSGDHGDYFRLL 361
Query: 666 ARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKNAFVTP 710
G Y V+A+APGY+P T + V E ++F L + V+P
Sbjct: 362 LPGIYTVSATAPGYDPETVT-VTVGPAEPTLVNFHLKRSIPQVSP 405
Score = 146 bits (369), Expect = 4e-38
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 172 MQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYG 231
MQDFNY+H+NCFEIT+ELSC K+P +L+ W NKE+LI+ +E VH+G+ G+V D
Sbjct: 273 MQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNY 332
Query: 232 NPLPSAIITVRWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVR 291
N L +A+I+V + VT + G+Y+RLL G Y V+A+APGY+P T + V E
Sbjct: 333 NNLANAVISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPGYDPETVT-VTVGPAEPTL 391
Query: 292 LDFMLGK 298
++F L +
Sbjct: 392 VNFHLKR 398
Score = 138 bits (350), Expect = 1e-35
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
R++ +L + K P + R +IG+SV+GR+L+ +E + D P ++P K
Sbjct: 5 RHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFS---DHPGIHEPLEPEVK 61
Query: 105 YVANMHGDETVGYALMVFLIQYLVLK-DGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163
YV NMHG+E +G LM+ L ++L + ++ RI QL+ T I+I+PS+NPDG+ A
Sbjct: 62 YVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQ 121
Query: 164 NLNTKQKRMQDFNYV 178
N + N
Sbjct: 122 GPNKPGYLVGRNNAN 136
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 349 bits (896), Expect = e-114
Identities = 159/381 (41%), Positives = 213/381 (55%), Gaps = 45/381 (11%)
Query: 359 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFK 418
Y+ ++AF+ ++Y + +IGKSV+GRNLW + + P + P FK
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVG---RFPKEHRIGIPEFK 60
Query: 419 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGK 478
YVANMHGDETVG L++ LI YLV DGKD IT L+NST I+I+PS+NPDGF A K+
Sbjct: 61 YVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPD 120
Query: 479 CDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGNLHGG- 537
C G +N + DLNRNFPD FEY +PET A+M ++ + FVLS NLHGG
Sbjct: 121 CYYSIGR---ENYNQYDLNRNFPDAFEYN-NVSRQPETVAVMKWLKTETFVLSANLHGGA 176
Query: 538 ------------------------------AVARDYASRNPMMAPGHACG--FDFKDGIT 565
+A YASRNP M G C +F +G+T
Sbjct: 177 LVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKNKMNFPNGVT 236
Query: 566 NGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHR 625
NG WY + GGMQD+NY+ + CFEIT+ELSCCKYP+ L +W NK SLI+ I+ VH
Sbjct: 237 NGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHL 296
Query: 626 GVYGIVTDTYGNPLPSAIITV--RWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVT 683
GV G V D GNPLP+ I+ V R + GEY+ LL G Y++ + PG++P
Sbjct: 297 GVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVPGHDPHI 356
Query: 684 TE---PLDVPDTESVRLDFML 701
T+ P + +++ D +L
Sbjct: 357 TKVIIPEKSQNFSALKKDILL 377
Score = 143 bits (361), Expect = 5e-37
Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 5/151 (3%)
Query: 172 MQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYG 231
MQD+NY+ + CFEIT+ELSCCKYP+ L +W NK SLI+ I+ VH GV G V D G
Sbjct: 248 MQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNG 307
Query: 232 NPLPSAIITV--RWNDKAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTE---PLDVPD 286
NPLP+ I+ V R + GEY+ LL G Y++ + PG++P T+ P +
Sbjct: 308 NPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQN 367
Query: 287 TESVRLDFMLGKKNAFSIDQLKNPFIEIMTL 317
+++ D +L + + NP ++ L
Sbjct: 368 FSALKKDILLPFQGQLDSIPVSNPSCPMIPL 398
Score = 135 bits (342), Expect = 2e-34
Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
Y+ ++AF+ ++Y + +IGKSV+GRNLW + + P + P FK
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVG---RFPKEHRIGIPEFK 60
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGN 164
YVANMHGDETVG L++ LI YLV DGKD IT L+NST I+I+PS+NPDGF A K+ +
Sbjct: 61 YVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPD 120
Query: 165 LN 166
Sbjct: 121 CY 122
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 208 bits (531), Expect = 1e-61
Identities = 78/325 (24%), Positives = 121/325 (37%), Gaps = 57/325 (17%)
Query: 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMF 417
Y+N E+ I +YP++V+ +IGKS +GR LWAV+I+ +V + +P
Sbjct: 7 SGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN----EPEV 62
Query: 418 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 477
Y A H E + + ++ + D RIT L+N+ +IYIV +INPDG
Sbjct: 63 LYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISS 122
Query: 478 KCDSLDGYVGRKN--------AHGVDLNRNFPDQFEYEAKK-------VY-------EPE 515
RKN G DLNRN+ ++ Y PE
Sbjct: 123 GSYKS----WRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPE 178
Query: 516 TQAIMNFIYS------NPFVLSGNLHGGA-------------VARDYASRNPMMAPGHAC 556
T A+ +FI S H + V D + + A
Sbjct: 179 TAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYTYTDVPSDMTQDDFNVFKTMAN 238
Query: 557 GFDFKDGI--TNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCK-----YPKASDLKHYW 609
+G G+ Y GGM D+ Y F T E+ YP +
Sbjct: 239 TMAQTNGYTPQQGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRET 298
Query: 610 AANKESLIKLIENVHRGVYGIVTDT 634
+ NKE+++ + E Y ++ +
Sbjct: 299 SRNKEAVLYVAEKADC-PYSVIGKS 322
Score = 122 bits (307), Expect = 1e-30
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
Y+N E+ I +YP++V+ +IGKS +GR LWAV+I+ +V + + +P
Sbjct: 7 SGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN----EPEV 62
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163
Y A H E + + ++ + D RIT L+N+ +IYIV +INPDG
Sbjct: 63 LYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISS 122
Query: 164 NLNTKQKRMQDFN---YVHSNCF 183
+ N S+
Sbjct: 123 GSY----KSWRKNRQPNSGSSYV 141
Score = 46.2 bits (110), Expect = 2e-05
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 172 MQDFNYVHSNCFEITMELSCCK-----YPKASDLKHYWAANKESLIKLIENVHRGVYGIV 226
M D+ Y F T E+ YP + + NKE+++ + E Y ++
Sbjct: 261 MDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADC-PYSVI 319
Query: 227 TDT 229
+
Sbjct: 320 GKS 322
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 142 bits (359), Expect = 3e-37
Identities = 53/307 (17%), Positives = 90/307 (29%), Gaps = 58/307 (18%)
Query: 336 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 395
+D D L + + + + + + L V +G SVQGR++
Sbjct: 99 PSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDI 158
Query: 396 WAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 455
+ + D+ +A H E + M LI+ L D + +LL
Sbjct: 159 ELLRVRRHPDSH-------LKLWVIAQQHPGEHMAEWFMEGLIERLQ--RPDDTEMQRLL 209
Query: 456 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPE 515
D+Y+VP++NPDG R NA G DLNR + + PE
Sbjct: 210 EKADLYLVPNMNPDGAFHGNL-----------RTNAAGQDLNRAWLEPSAER-----SPE 253
Query: 516 TQAIMNFIYSNPFVLSGNLHGGA-------------------------VARDYASRNPMM 550
+ + + L ++HG R+
Sbjct: 254 VWFVQQEMKRHGVDLFLDIHGDEEIPHVFAAGCEGNPGYTPRLERLEQRFREELMARGEF 313
Query: 551 APGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWA 610
H G N G D C T+E+ + + W+
Sbjct: 314 QIRHGY-PRSAPGQANLALACNFVGQTYD-------CLAFTIEMPFKDHDDNPEPGTGWS 365
Query: 611 ANKESLI 617
+ +
Sbjct: 366 GARSKRL 372
Score = 69.8 bits (170), Expect = 8e-13
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
+D D L + + + + + + L V +G SVQGR++
Sbjct: 99 PSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDI 158
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 141
+ + DS +A H E + M LI+ L D + +LL
Sbjct: 159 ELLRVRRHPDSH-------LKLWVIAQQHPGEHMAEWFMEGLIERLQ--RPDDTEMQRLL 209
Query: 142 NSTDIYIVPSINPDGFAAAKEG-NLN 166
D+Y+VP++NPDG N
Sbjct: 210 EKADLYLVPNMNPDGAFHGNLRTNAA 235
Score = 42.4 bits (99), Expect = 4e-04
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 153 NPDGFAAAKEGNLNTKQKRMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLI 212
G+ + G +F +C T+E+ + + W+ + +
Sbjct: 315 IRHGYPRSAPGQ--ANLALACNFVGQTYDCLAFTIEMPFKDHDDNPEPGTGWSGARSKRL 372
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 136 bits (344), Expect = 5e-35
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 42/298 (14%)
Query: 336 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 395
Y + + DS Y+ F+ + +G++V+GR +
Sbjct: 108 SYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQ--MPQASVVELGRTVEGRPM 165
Query: 396 WAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD--GKDDRITQ 453
V + PD K +A H E++ + L++ LV D +
Sbjct: 166 SLVVL----GTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARK 221
Query: 454 LLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYE 513
L + YIVP++NPDG R NA G +LNR + +
Sbjct: 222 LYDHATFYIVPNMNPDGSVHGNL-----------RTNAAGANLNREWMEPDAER-----S 265
Query: 514 PETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAPGH------------------A 555
PE + + I++ L ++HG + M PG +
Sbjct: 266 PEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRAS 325
Query: 556 CGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANK 613
F + G G Y + C +T+E+ D W +
Sbjct: 326 PDFQDEHGYPPGKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGAR 383
Score = 71.0 bits (173), Expect = 4e-13
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 9/148 (6%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
Y + + DS Y+ F+ + +G++V+GR +
Sbjct: 108 SYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQ--MPQASVVELGRTVEGRPM 165
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD--GKDDRITQ 139
V + +PD K +A H E++ + L++ LV D +
Sbjct: 166 SLVVL----GTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARK 221
Query: 140 LLNSTDIYIVPSINPDGFAAAKEG-NLN 166
L + YIVP++NPDG N
Sbjct: 222 LYDHATFYIVPNMNPDGSVHGNLRTNAA 249
Score = 41.3 bits (96), Expect = 8e-04
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 103 FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPD---GFAA 159
++HGDE + Y VF +L + + ++ S I +PD
Sbjct: 280 CDLFFDIHGDEDLPY---VFAAGSEMLPGFTEQQ--RVEQSAFIDSFKRASPDFQDEHGY 334
Query: 160 AKEGNLNTKQKRMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANK 208
K + C +T+E+ D W +
Sbjct: 335 PPGKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGAR 383
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 114 bits (287), Expect = 4e-28
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 36/196 (18%)
Query: 356 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKP 415
+ Y+ E+ + V +P LV IG S + R + ++ + D KP
Sbjct: 2 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD--------KP 53
Query: 416 MFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 475
A +H E V A ++ +V GKD IT +L++ DI+++P NPDG+ ++
Sbjct: 54 AIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQ 113
Query: 476 EGKCDSLDGYVGRKNA---------HGVDLNRNFPDQFEYEAKKVY-------------E 513
+ + RK GVD NRN+ F E
Sbjct: 114 TK--NRM----WRKTRSKVSAGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSE 167
Query: 514 PETQAIMNFIYSNPFV 529
E ++I++FI S+ V
Sbjct: 168 VEVKSIVDFIKSHGKV 183
Score = 93.2 bits (232), Expect = 6e-21
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 42 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKP 101
+ Y+ E+ + V +P LV IG S + R + ++ + D KP
Sbjct: 2 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD--------KP 53
Query: 102 MFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFA 158
A +H E V A ++ +V GKD IT +L++ DI+++P NPDG+
Sbjct: 54 AIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYV 110
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 116 bits (292), Expect = 5e-28
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 348 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNP 407
++ + + + ++ E+DA++ + K +P++V GKS +GR++ + I+
Sbjct: 109 SNSTRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIS----TT 164
Query: 408 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 467
+ + KP+ + +H E V ++ I LV D + L+N+ D I+P N
Sbjct: 165 NFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLV----IDVTESDLINNIDWIILPVAN 220
Query: 468 PDGFAAAKEGKC----DSLDGYVGRKNAHGVDLNRNFPDQFEYEAKK-----VY------ 512
PDG+ G + GY+ GVDLNRNF + + +
Sbjct: 221 PDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAF 280
Query: 513 -EPETQAIMNFI--YSNPFVLSGNLH 535
EPE+ I + I + N L ++H
Sbjct: 281 SEPESSVIRDIIAEHRNRMALYLDIH 306
Score = 91.4 bits (227), Expect = 9e-20
Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
++ + + + ++ E+DA++ + K +P++V GKS +GR++ + I+ +
Sbjct: 109 SNSTRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIS----TT 164
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 153
+ + KP+ + +H E V ++ I LV D + L+N+ D I+P N
Sbjct: 165 NFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLV----IDVTESDLINNIDWIILPVAN 220
Query: 154 PDGFAAAKEGNLNTKQKRMQDFNYVHSNCF 183
PDG+ G+ +K + C
Sbjct: 221 PDGYVHTFGGDRY-WRKNRATGYMAGNLCM 249
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 113 bits (285), Expect = 7e-28
Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 352 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRT 411
S + Y++ + + +P L R IG S + R ++ ++ +
Sbjct: 2 SNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVR---- 57
Query: 412 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471
+P A +H E + A ++ + +V +D IT +L DI+++P NPDG+
Sbjct: 58 --RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 115
Query: 472 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYEA------KKVY----- 512
+ + L RK G D NRN+ F + +VY
Sbjct: 116 VYTQTQ--NRL----WRKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHA 169
Query: 513 --EPETQAIMNFIYSNP 527
E E +++++FI +
Sbjct: 170 NSEVEVKSVVDFIQKHG 186
Score = 96.6 bits (241), Expect = 4e-22
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
S + Y++ + + +P L R IG S + R ++ ++ +
Sbjct: 2 SNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVR---- 57
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 157
+P A +H E + A ++ + +V +D IT +L DI+++P NPDG+
Sbjct: 58 --RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 115
Query: 158 A 158
Sbjct: 116 V 116
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 115 bits (289), Expect = 1e-27
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 35/203 (17%)
Query: 348 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNP 407
S + Y+ E+ + V +P LV IG S + R + ++ + D
Sbjct: 93 RRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD-- 150
Query: 408 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 467
KP A +H E V A ++ +V GKD IT +L++ DI+++P N
Sbjct: 151 ------KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTN 204
Query: 468 PDGFAAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFPDQFEYEAKKVY------- 512
PDG+ ++ + + RK GVD NRN+ F
Sbjct: 205 PDGYVFSQTK--NRMW----RKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYH 258
Query: 513 ------EPETQAIMNFIYSNPFV 529
E E ++I++FI S+ V
Sbjct: 259 GPSANSEVEVKSIVDFIKSHGKV 281
Score = 92.9 bits (231), Expect = 2e-20
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
S + Y+ E+ + V +P LV IG S + R + ++ + D
Sbjct: 93 RRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD-- 150
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 153
KP A +H E V A ++ +V GKD IT +L++ DI+++P N
Sbjct: 151 ------KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTN 204
Query: 154 PDGFAAAKEGN 164
PDG+ ++ N
Sbjct: 205 PDGYVFSQTKN 215
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 112 bits (283), Expect = 1e-27
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 34/196 (17%)
Query: 352 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRT 411
+ G ++Y N ++A+ + P L+ IG + G N++ +++ N
Sbjct: 1 TTGHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN----- 55
Query: 412 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471
KP H E + +A + ++ VL G + +T+ LN D Y++P +N DG+
Sbjct: 56 --KPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGY 113
Query: 472 AAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFPDQFEYEAKKVY----------- 512
+ + RK G D NRNF +
Sbjct: 114 IYTWTK--NRM----WRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAA 167
Query: 513 --EPETQAIMNFIYSN 526
E ET+A+ +FI +N
Sbjct: 168 ESEKETKALADFIRNN 183
Score = 95.6 bits (238), Expect = 1e-21
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
+ G ++Y N ++A+ + P L+ IG + G N++ +++ +
Sbjct: 1 TTGHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN----- 55
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 157
KP H E + +A + ++ VL G + +T+ LN D Y++P +N DG+
Sbjct: 56 --KPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGY 113
Query: 158 A 158
Sbjct: 114 I 114
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 112 bits (282), Expect = 2e-27
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 34/197 (17%)
Query: 352 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRT 411
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 1 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 56
Query: 412 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 57 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 114
Query: 472 AAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFPDQFEYEAKK-------VY---- 512
+ D + RKN G DLNRNF + +Y
Sbjct: 115 DYTWKK--DRM----WRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTY 168
Query: 513 ---EPETQAIMNFIYSN 526
EPE +A+ +F+ N
Sbjct: 169 PESEPEVKAVADFLRRN 185
Score = 95.2 bits (237), Expect = 1e-21
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 1 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 56
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 157
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 57 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 114
Query: 158 A 158
Sbjct: 115 D 115
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 111 bits (279), Expect = 4e-27
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 34/197 (17%)
Query: 352 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRT 411
+ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + N
Sbjct: 4 TNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN----- 58
Query: 412 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471
+P +H E + A V+ + G+D T +L+S DI++ NPDGF
Sbjct: 59 --RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGF 116
Query: 472 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYEAKKVY----------- 512
A + L RK GVD NRN+ F
Sbjct: 117 AFTHSQ--NRL----WRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYA 170
Query: 513 --EPETQAIMNFIYSNP 527
E E ++I++F+ +
Sbjct: 171 NSEVEVKSIVDFVKDHG 187
Score = 93.6 bits (233), Expect = 4e-21
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
+ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + +
Sbjct: 4 TNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN----- 58
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 157
+P +H E + A V+ + G+D T +L+S DI++ NPDGF
Sbjct: 59 --RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGF 116
Query: 158 A 158
A
Sbjct: 117 A 117
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 109 bits (274), Expect = 7e-27
Identities = 40/288 (13%), Positives = 76/288 (26%), Gaps = 55/288 (19%)
Query: 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMF 417
S ++DAF + + L + SV + + + P
Sbjct: 17 IFNCQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSD-------LPSL 69
Query: 418 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 477
+ HG+E G M+ ++ L L ++ ++P +NP GF A
Sbjct: 70 LISSGFHGEEAAGPWGMLHFLRGLQ---------PALFERVNLSLLPLVNPTGFKAGH-- 118
Query: 478 KCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVY-EPETQAIMNFI---YSNPFVLSGN 533
R N G + NR F + + E + ++ +
Sbjct: 119 ----------RFNRFGENPNRGFTLENGKPTPNEHTSLEGKLLLEHAQLLCAASRDGILT 168
Query: 534 LHGGAVARDY------------------ASRNPMMAPGHACGFDFKDGITNGNYWYKVTG 575
H + + GF + +T+G +
Sbjct: 169 CHEDVLMNETYVYSFEPTQTPGRFSLGLRDALGQYFKLAKDGFIDECPVTDGVIFNHFDT 228
Query: 576 GMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENV 623
+ F E P D AN ++ + I +
Sbjct: 229 SFEAFLVRSGAKLAACSET-----PGQEDFDRRVQANSAAMGQFIAHC 271
Score = 56.3 bits (135), Expect = 7e-09
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 16/116 (13%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
S ++DAF + + L + SV + + P
Sbjct: 17 IFNCQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSD-------LPSL 69
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAA 159
+ HG+E G M+ ++ L L ++ ++P +NP GF A
Sbjct: 70 LISSGFHGEEAAGPWGMLHFLRGLQ---------PALFERVNLSLLPLVNPTGFKA 116
Score = 39.8 bits (92), Expect = 0.002
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 149 VPSINPDGF---AAAKEGNL-NTKQKRMQDFNYVHSNCFEITMELSCCKYPKASDLKHYW 204
+ DGF +G + N + F E P D
Sbjct: 203 YFKLAKDGFIDECPVTDGVIFNHFDTSFEAFLVRSGAKLAACSET-----PGQEDFDRRV 257
Query: 205 AANKESLIKLIENV 218
AN ++ + I +
Sbjct: 258 QANSAAMGQFIAHC 271
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 110 bits (277), Expect = 8e-27
Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 38/196 (19%)
Query: 355 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMK 414
+ Y +D ++ + YP + +S +GR + ++I+ + K
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKIS----TTNFEDENK 56
Query: 415 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA 474
P+ +H E + + + I LV +D LL D ++P +NPDG+
Sbjct: 57 PVIFIDGGIHAREWISPPSVTWAIHKLV----EDVTENDLLEKFDWILLPVVNPDGYKYT 112
Query: 475 KEGKCDSLDGYVGRKNA-----------HGVDLNRNFPDQFEYEAKK------VY----- 512
+ RK G D NRNF + +Y
Sbjct: 113 FTN--ERF----WRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSA 166
Query: 513 --EPETQAIMNFIYSN 526
E ET+ + + ++ +
Sbjct: 167 FSEVETRVVRDILHEH 182
Score = 88.6 bits (220), Expect = 2e-19
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 41 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMK 100
+ Y +D ++ + YP + +S +GR + ++I+ + + K
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKIS----TTNFEDENK 56
Query: 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFA 158
P+ +H E + + + I LV +D LL D ++P +NPDG+
Sbjct: 57 PVIFIDGGIHAREWISPPSVTWAIHKLV----EDVTENDLLEKFDWILLPVVNPDGYK 110
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 110 bits (277), Expect = 3e-26
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 34/200 (17%)
Query: 348 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNP 407
+ G ++Y ++A+ + P L+ IG + +GR ++ +++ N
Sbjct: 92 SRVRATGHSYEKYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQN- 150
Query: 408 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 467
KP H E + A + ++ V G++ ++T+LLN D Y++P +N
Sbjct: 151 ------KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLN 204
Query: 468 PDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYEAKK------VY- 512
DG+ RK G D NRNF + Y
Sbjct: 205 IDGYIYTWTKSR------FWRKTRSTHTGSSCIGTDPNRNFDAGWCEIGASRNPCDETYC 258
Query: 513 ------EPETQAIMNFIYSN 526
E ET+A+ +FI +
Sbjct: 259 GPAAESEKETKALADFIRNK 278
Score = 91.4 bits (227), Expect = 8e-20
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
+ G ++Y ++A+ + P L+ IG + +GR ++ +++ +
Sbjct: 92 SRVRATGHSYEKYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQN- 150
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 153
KP H E + A + ++ V G++ ++T+LLN D Y++P +N
Sbjct: 151 ------KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLN 204
Query: 154 PDGFAAAKEGN 164
DG+ +
Sbjct: 205 IDGYIYTWTKS 215
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 106 bits (266), Expect = 9e-26
Identities = 40/290 (13%), Positives = 71/290 (24%), Gaps = 55/290 (18%)
Query: 358 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMF 417
ST++ F L I L+ ++ P
Sbjct: 16 IFECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAG-------LPNL 68
Query: 418 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 477
A HG+E+ G ++ + L +L ++ ++P +NP GFA
Sbjct: 69 LISAGFHGEESAGPWGLLHFLSQLD---------GELFKRVNLSVLPLVNPTGFAKGH-- 117
Query: 478 KCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVY-EPETQAIMNFIYSNPFVLSG---N 533
R N G + NR F + E + ++ +
Sbjct: 118 ----------RFNELGENPNRGFFIENGKAKPGADTSAEGRILLEHAHLLQVASRDGILT 167
Query: 534 LH--GGAVARDYASRNPMMAPG--------------HACGFDFKDG--ITNGNYWYKVTG 575
H + P APG D + +G +
Sbjct: 168 CHEDVLMTDTYVYTFEPSQAPGRFSHSLRDALGQYFPIAADGDVDNCPVRSGVIFNHFDT 227
Query: 576 GMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANKESLIKLIENVHR 625
+ F E P L AN ++ + +
Sbjct: 228 SFESFLVRSGARVGCCSET-----PGQQPLDQRILANAAAMNTFVNMLAP 272
Score = 55.9 bits (134), Expect = 1e-08
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 16/123 (13%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
ST++ F + + + G + + + + P
Sbjct: 16 IFECQSTDIQRF-YSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAG------LPNL 68
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 163
A HG+E+ G ++ + L +L ++ ++P +NP GFA
Sbjct: 69 LISAGFHGEESAGPWGLLHFLSQLD---------GELFKRVNLSVLPLVNPTGFAKGHRF 119
Query: 164 NLN 166
N
Sbjct: 120 NEL 122
Score = 46.2 bits (109), Expect = 2e-05
Identities = 9/74 (12%), Positives = 15/74 (20%), Gaps = 5/74 (6%)
Query: 147 YIVPSINPDGFAAAKEGNLNTKQKRMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAA 206
I + D N + F E P L A
Sbjct: 204 PIAADGDVDNCPVRSGVIFNHFDTSFESFLVRSGARVGCCSET-----PGQQPLDQRILA 258
Query: 207 NKESLIKLIENVHR 220
N ++ + +
Sbjct: 259 NAAAMNTFVNMLAP 272
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 109 bits (272), Expect = 1e-25
Identities = 53/317 (16%), Positives = 100/317 (31%), Gaps = 54/317 (17%)
Query: 336 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 395
+Y ++ D ++ I Y+ I + LV E +G ++ GR++
Sbjct: 106 EYKDGKLSISVELDCEAIQIAYFTPYSYERHLDLI--SAVQLHPLVSTEHLGLTLDGRDM 163
Query: 396 WAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 455
V++ D + A H ET+ L+ L+ L+ D LL
Sbjct: 164 TLVKVGDDDPSK-------KSIWITARQHPGETMAEWLVEGLLNQLL--DNDCPTSKALL 214
Query: 456 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAKKVYEPE 515
+ + YIVP++NPDG R NA G +LNR + PE
Sbjct: 215 DKANFYIVPNMNPDGSVRGHL-----------RTNAVGANLNREWQTPSLER-----SPE 258
Query: 516 TQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAPGH------------------ACG 557
++N ++ L ++HG P + +
Sbjct: 259 VYYVVNKMHETGVDLFYDVHGDEGLPYVFLAGCEGIPNYSDKLASLQQDFVAALSLASAD 318
Query: 558 FDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCKYPKASDLKHYWAANK---- 613
F + G ++ C T+E+ +D W+ +
Sbjct: 319 FQTEFGYDKDEPGKANLTVACNWVANTFKCLSNTLEMPFKDNANLADPFQGWSPERSVYF 378
Query: 614 -----ESLIKLIENVHR 625
++ +I+ + +
Sbjct: 379 GEASLIAMRAVIDKIGQ 395
Score = 65.6 bits (159), Expect = 2e-11
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
+Y ++ D ++ I Y+ I + LV E +G ++ GR++
Sbjct: 106 EYKDGKLSISVELDCEAIQIAYFTPYSYERHLDLI--SAVQLHPLVSTEHLGLTLDGRDM 163
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 141
V++ D S A H ET+ L+ L+ L+ D LL
Sbjct: 164 TLVKVGDDDPSK-------KSIWITARQHPGETMAEWLVEGLLNQLL--DNDCPTSKALL 214
Query: 142 NSTDIYIVPSINPDGFA 158
+ + YIVP++NPDG
Sbjct: 215 DKANFYIVPNMNPDGSV 231
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 108 bits (271), Expect = 2e-25
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 33/217 (15%)
Query: 331 LSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSV 390
L D D ++ S + Y++ + + +P L R IG S
Sbjct: 77 LQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSF 136
Query: 391 QGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR 450
+ R ++ ++ + +P A +H E + A ++ + +V +D
Sbjct: 137 ENRPMYVLKFSTGKGVR------RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPA 190
Query: 451 ITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPD 502
IT +L DI+++P NPDG+ + + L RK G D NRN+
Sbjct: 191 ITSILEKMDIFLLPVANPDGYVYTQTQ--NRL----WRKTRSRNPGSSCIGADPNRNWNA 244
Query: 503 QF------------EYEAKKVY-EPETQAIMNFIYSN 526
F Y E E +++++FI +
Sbjct: 245 SFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKH 281
Score = 93.7 bits (233), Expect = 1e-20
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 6/148 (4%)
Query: 17 LSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSV 76
L D D ++ S + Y++ + + +P L R IG S
Sbjct: 77 LQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSF 136
Query: 77 QGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR 136
+ R ++ ++ + +P A +H E + A ++ + +V +D
Sbjct: 137 ENRPMYVLKFSTGKGVR------RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPA 190
Query: 137 ITQLLNSTDIYIVPSINPDGFAAAKEGN 164
IT +L DI+++P NPDG+ + N
Sbjct: 191 ITSILEKMDIFLLPVANPDGYVYTQTQN 218
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 107 bits (268), Expect = 4e-25
Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 34/201 (16%)
Query: 348 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNP 407
++ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + N
Sbjct: 95 RARTTSTFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSN- 153
Query: 408 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 467
+P + +H E + A V+ + + G++ T +L+S DI++ N
Sbjct: 154 ------RPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTN 207
Query: 468 PDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYEAKK------VY- 512
P+GFA + L RK G D NRN+ F Y
Sbjct: 208 PNGFAFTHSD--NRL----WRKTRSKASGSLCVGSDSNRNWDAGFGGAGASSSPCAETYH 261
Query: 513 ------EPETQAIMNFIYSNP 527
E E ++I +F+ +N
Sbjct: 262 GKYPNSEVEVKSITDFVKNNG 282
Score = 91.0 bits (226), Expect = 1e-19
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
++ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + +
Sbjct: 95 RARTTSTFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSN- 153
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSIN 153
+P + +H E + A V+ + + G++ T +L+S DI++ N
Sbjct: 154 ------RPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTN 207
Query: 154 PDGFAAAKEGN 164
P+GFA N
Sbjct: 208 PNGFAFTHSDN 218
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 106 bits (267), Expect = 6e-25
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 34/197 (17%)
Query: 352 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRT 411
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 93 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 148
Query: 412 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 471
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 149 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 206
Query: 472 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYEAKK-------VY---- 512
+ D + RKN G DLNRNF + +Y
Sbjct: 207 DYTWKK--DRM----WRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTY 260
Query: 513 ---EPETQAIMNFIYSN 526
EPE +A+ +F+ N
Sbjct: 261 PESEPEVKAVADFLRRN 277
Score = 91.4 bits (227), Expect = 8e-20
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 93 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 148
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGF 157
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 149 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 206
Query: 158 AAAKEGN 164
+ +
Sbjct: 207 DYTWKKD 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 76/483 (15%), Positives = 145/483 (30%), Gaps = 153/483 (31%)
Query: 24 YFDFD-DLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPH--LVRAETIGKSVQGRN 80
+ D + T D S+ I L+ + EL + K Y + LV N
Sbjct: 206 LYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKS--KPYENCLLVL----------LN 252
Query: 81 LWAVEITHDVDSPDG--RTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRIT 138
+ + ++ + + L+ FK V + T + + L D+ +
Sbjct: 253 VQNAKA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKS 305
Query: 139 QLLNSTDIYI------VPSINP---DGFAAAKEGNLNTKQKRMQDFNYVHSNC--FEITM 187
LL D V + NP A + L T N+ H NC +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKHVNCDKLTTII 359
Query: 188 ELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKA 247
E S + ++ + + + L + H +P+ ++++ W D
Sbjct: 360 E-SSLNVLEPAEYRKMF----DRLSVFPPSAH--------------IPTILLSLIWFDV- 399
Query: 248 VTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKNAFSIDQL 307
+ ++ + V + L K + +++
Sbjct: 400 -----------------------------IKSDVMVVVNK--------LHKYSL--VEKQ 420
Query: 308 KNPFIEIMTLIVPSLSL-LLCHVTLSTAA-----DYY-----FDFDDLTGLEDADSAGID 356
T+ +PS+ L L + A D+Y FD DDL D
Sbjct: 421 PKES----TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQ---- 471
Query: 357 LQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL-----W-AVEITHDVDNPDGR 410
Y+ S I + HL E + R + + +I HD +
Sbjct: 472 ---YFYS-----HI-----GH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 411 TLMKPMF-------KYVANMHGD-ETVGYALMVFLIQY-LVLKDGKDDRITQ--LLNSTD 459
+ Y+ + E + A++ FL + L K + + L+ +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 460 -IY 461
I+
Sbjct: 578 AIF 580
Score = 39.5 bits (91), Expect = 0.005
Identities = 59/473 (12%), Positives = 126/473 (26%), Gaps = 169/473 (35%)
Query: 234 LPSAIITVRWNDKAVTVTNRGE-----YWRLLARGK-----YVVTASAPGY----EPVTT 279
+P +I++ D + + +W LL++ + +V Y P+ T
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 280 EPLDVPDTESVR----LDFMLGKKNAFS---------IDQLKNPFIEIMTLIVPSLSLLL 326
E P + D + F+ +L+ +E+ P+ ++L+
Sbjct: 101 EQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR----PAKNVLI 155
Query: 327 CH---------VTLSTAADYYFDFDDLTGLEDADSAGI---DLQRYYNSTELDAFILKTV 374
V L Y ++ I +L + NS E +L+ +
Sbjct: 156 -DGVLGSGKTWVALDVCLSY--------KVQCKMDFKIFWLNL-KNCNSPET---VLEML 202
Query: 375 KSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALM 434
+ + + +S N+ H + R L ++ L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYEN------------CL- 247
Query: 435 VFLIQYLVLKDGKDDRITQ--------LLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYV 486
LVL + ++ + LL + + D L
Sbjct: 248 ------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT----------------DFLSAAT 285
Query: 487 GRKNAHGVDLNRNF-PDQ-FEYEAKKVYE------PETQAIMNFIYSNPFVLSGNLHGGA 538
+ + PD+ K + E NP LS
Sbjct: 286 -TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT------NPRRLSII---AE 335
Query: 539 VARDYASRNPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITMELSCCK 598
RD + + W +V+ + +E S
Sbjct: 336 SIRDGLATW--------------------DNW----------KHVNCDKLTTIIE-SSLN 364
Query: 599 YPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDK 651
+ ++ + + + L + H +P+ ++++ W D
Sbjct: 365 VLEPAEYRKMF----DRLSVFPPSAH--------------IPTILLSLIWFDV 399
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 47.2 bits (111), Expect = 1e-05
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 29/184 (15%)
Query: 396 WAVEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 455
++ + G ++ AN+HG E G A++ L++ L +
Sbjct: 20 LSLPVYRFKGKGAGPSVY-----IQANVHGAEVQGNAVIYQLMKLLEHYE---------- 64
Query: 456 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAH-GVDLNRNFPDQFEYEAKKVY-- 512
DI +VP NP G S + +GR + GV+ NR + D
Sbjct: 65 LLGDISLVPLANPLGINQK------SGEFTLGRFDPITGVNWNREYLDHGFNIEVWYQEH 118
Query: 513 -----EPETQAIMNFIYSNPFVLSGNLHGGAVARDYASRNPMMAPGHACGFDFKDGITNG 567
+ A + N G A MA D G +
Sbjct: 119 SHLDDDTLITAFRATLVEECARRLNNPWGVTTGHRLAVTLQSMAHRADIVLDLHTGPKSC 178
Query: 568 NYWY 571
+ Y
Sbjct: 179 KHLY 182
Score = 34.2 bits (77), Expect = 0.16
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLL 141
++ + G ++ AN+HG E G A++ L++ L +
Sbjct: 20 LSLPVYRFKGKGAGPSVY-----IQANVHGAEVQGNAVIYQLMKLLEHYE---------- 64
Query: 142 NSTDIYIVPSINPDGFAA 159
DI +VP NP G
Sbjct: 65 LLGDISLVPLANPLGINQ 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.005
Identities = 83/574 (14%), Positives = 147/574 (25%), Gaps = 241/574 (41%)
Query: 110 HGDETVGYALMV---FLIQYLVLKDGKDDRITQLLNSTDIYIV---PSINPD------GF 157
HG + + L+V L++ L T+ + P+ + G+
Sbjct: 13 HGS--LEHVLLVPTASFFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 158 AAAKEGNLNTKQKR------MQDF-------NYVHSNCFEITMELSCCKYPKASDLKHYW 204
++ Q + +F N +H+ ++ E +K+Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 205 AA--------NKESLIKLIENVHRGVYGIVT-------------------DTYGNPLPSA 237
A +K+S L V G +V TY + L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-HVLVGD 186
Query: 238 IIT--------------------------VRWNDKAVTVTNRGEYWR----------LLA 261
+I + W + ++ +Y ++
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGVIQ 245
Query: 262 RGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKNAFSIDQLKNPFIEIMTLIVPS 321
YVVTA G+ P +R LK
Sbjct: 246 LAHYVVTAKLLGFTP-----------GELR-------------SYLK------------- 268
Query: 322 LSLLLCHVTLSTAADYYFDFDDLTGLEDADSAGIDLQRYYNST----ELDAFI-LKTVKS 376
L TA A + + ++ S + FI ++ ++
Sbjct: 269 -GATGHSQGLVTAV--------------AIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 377 YPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKPMF-----------KYVA--NM 423
YP+ +L + ++N + PM YV N
Sbjct: 314 YPNT-------------SLPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 424 HGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSLD 483
H L GK I+ L+N +V S G + G +L
Sbjct: 359 H------------------LPAGKQVEIS-LVNGAKNLVV-S----GPPQSLYGLNLTL- 393
Query: 484 GYVGRKNA--HGVDLNRNFPDQFEYEAKKVYEPETQAIMNF--IYSNPFVLSGNLH---- 535
RK G+D +R + +K + F + ++PF H
Sbjct: 394 ----RKAKAPSGLDQSR-----IPFSERK---LKFS--NRFLPV-ASPF------HSHLL 432
Query: 536 GGAVAR---DYASRNPMMAPGHACG---FDFKDG 563
A D N + +D DG
Sbjct: 433 VPASDLINKDLVKNN-VSFNAKDIQIPVYDTFDG 465
Score = 34.6 bits (79), Expect = 0.13
Identities = 63/412 (15%), Positives = 118/412 (28%), Gaps = 129/412 (31%)
Query: 306 QLKNPFIEIMTLIVPSLSLLLCHVTLSTAADYYFDF-------DDLTGLEDADSAGIDL- 357
L + +E L+VP+ S S + F + +D + +L
Sbjct: 10 TLSHGSLEH-VLLVPTAS----FFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELV 61
Query: 358 QRY--YNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDNPDGRTLMKP 415
++ Y S+ ++ V + ++ + L +I H +
Sbjct: 62 GKFLGYVSSLVEP---SKVGQFDQVLNL--CLTEFENCYLEGNDI-HAL----------- 104
Query: 416 MFKYVANMHGDETVGYALMVFLIQ-YLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAA 474
A + + LI+ Y+ N F A
Sbjct: 105 ----AAKLLQENDTTLVKTKELIKNYI-----------TARIMAKRPFDKKSNSALFRAV 149
Query: 475 KEGKCDSLDGYV---GRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLS 531
EG L G+ G N D FE E + +Y+ + + I + LS
Sbjct: 150 GEGNA-QL--VAIFGGQ----G-----NTDDYFE-ELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 532 GNLHGGAVARDYASRNPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEIT 591
+ A ++ G + + W + D +Y+ ++
Sbjct: 197 ELIRTTLDAEKVFTQ----------GLNILE-------WLENPSNTPDKDYL------LS 233
Query: 592 MELSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGIVTDTYG-NPLPSAIITVRWND 650
+ +SC P LI +I+ H Y + G P +R
Sbjct: 234 IPISC---P---------------LIGVIQLAH---YVVTAKLLGFTPG-----ELRSYL 267
Query: 651 KAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLG 702
K T + +VTA A + E V +++ + F +G
Sbjct: 268 KGATG-----------HSQGLVTAVAIAETD-SWESFFVSVRKAITVLFFIG 307
Score = 31.9 bits (72), Expect = 0.96
Identities = 55/312 (17%), Positives = 104/312 (33%), Gaps = 114/312 (36%)
Query: 187 MELSCCKYPKASDLKHYW-AANKESLIKLIENVHRGVYGIVTDTYGNPLPSAIITVRWND 245
M+L Y + + W A+ H DTYG S + V N
Sbjct: 1633 MDL----YKTSKAAQDVWNRADN----------H------FKDTYGF---SILDIVINNP 1669
Query: 246 KAVTVTNRGEYWRLLARGKYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKNA---F 302
+T+ GE +GK + Y + E + ++ ++ + + + F
Sbjct: 1670 VNLTIHFGGE------KGKRI----RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 303 SIDQLKNPFIEIMTLIV---PSLSLLLCHVTLSTAADYYFDFDDL--TGLEDADS--AG- 354
++ +++ P+L + AA F+DL GL AD+ AG
Sbjct: 1720 RSEK------GLLSATQFTQPAL------TLMEKAA-----FEDLKSKGLIPADATFAGH 1762
Query: 355 --------------IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSV----QGRN-- 394
+ ++ ++ V R T+ +V GR+
Sbjct: 1763 SLGEYAALASLADVMSIE--------SL--VEVVF-----YRGMTMQVAVPRDELGRSNY 1807
Query: 395 -LWAVEITHDVDNPD--GRTLMKPMFKYVANMHGDETVGYALMV--FLI---QYLVLKDG 446
+ A+ NP + + +YV G T G+ + + + + QY+ D
Sbjct: 1808 GMIAI-------NPGRVAASFSQEALQYVVERVGKRT-GWLVEIVNYNVENQQYVAAGDL 1859
Query: 447 KD-DRITQLLNS 457
+ D +T +LN
Sbjct: 1860 RALDTVTNVLNF 1871
Score = 31.6 bits (71), Expect = 1.3
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 88/236 (37%)
Query: 354 GIDLQRYYNST-------ELDAF--------ILKTVKSYPHLVRAETIGKSVQGRNLWA- 397
G+DL Y S D IL V + P + G+ +G+ +
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE--KGKRIREN 1687
Query: 398 -VEITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLN 456
+ + DG+ + +FK + + + Y F + LL+
Sbjct: 1688 YSAMIFE-TIVDGKLKTEKIFKEI----NEHSTSY---TF--------RSEKG----LLS 1727
Query: 457 STD-----IYIVPSINPDGFAAAKE-GKCDSLDGYVGRKNAH--GVDLNRNFPDQFEYEA 508
+T + ++ F K G + + G H G EY A
Sbjct: 1728 ATQFTQPALTLM-EKAA--FEDLKSKGLIPADATFAG----HSLG-----------EYAA 1769
Query: 509 KKVYEPETQAIMNFIYSNPF-----VLS--GNLHGGAVARDYASRNP--MMA--PG 553
++ + + V+ G AV RD R+ M+A PG
Sbjct: 1770 -------LASLADVM---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Score = 28.9 bits (64), Expect = 7.6
Identities = 59/341 (17%), Positives = 97/341 (28%), Gaps = 140/341 (41%)
Query: 40 GIDLQRYYNST-------ELDAF--------ILKTVKSYPHLVRAETIGKSVQGRNLWA- 83
G+DL Y S D IL V + P + G+ +G+ +
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE--KGKRIREN 1687
Query: 84 -VEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLN 142
+ + DG+ + +FK + + + Y F + LL+
Sbjct: 1688 YSAMIFE-TIVDGKLKTEKIFKEI----NEHSTSY---TF--------RSEKG----LLS 1727
Query: 143 STD-----IYIVPSINPDGFAAAKE-GNLNTKQKRMQDFNYV--HSNCFEITM--E---L 189
+T + ++ F K G + HS E L
Sbjct: 1728 ATQFTQPALTLM-EKAA--FEDLKSKGLI-------PADATFAGHS-------LGEYAAL 1770
Query: 190 SCCKYPKAS--DLKHYWAANKESLIKLIENVH-RGVYGIVTDTYGNPLPSAIITVRWNDK 246
+ A + ESL+++ V RG
Sbjct: 1771 ASL----ADVMSI--------ESLVEV---VFYRG--------------------MTMQV 1795
Query: 247 AVTVTNRGEYWRLLARGKYVVTASAPG--YEPVTTEPLD-VPDTESVRLDFML------- 296
AV R E L R Y + A PG + E L V + R +++
Sbjct: 1796 AVP---RDE----LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 297 --------GKKNAFS-----IDQLKNPFIEIMTLIVPSLSL 324
G A ++ +K I+I+ L SLSL
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK-SLSL 1888
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 38.7 bits (89), Expect = 0.005
Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 21/83 (25%)
Query: 420 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKC 479
HGDE G + L +D I IVP N F A+
Sbjct: 55 TGANHGDEYEGPVALQELAATTRAEDVTGRLI----------IVPYFNYPAFRASAR--- 101
Query: 480 DSLDGYVGRKNAHGVDLNRNFPD 502
+LNR FP
Sbjct: 102 --------TSPIDRGNLNRAFPG 116
Score = 33.7 bits (76), Expect = 0.19
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 161
HGDE G + L +D I IVP N F A+
Sbjct: 55 TGANHGDEYEGPVALQELAATTRAEDVTGRLI----------IVPYFNYPAFRASA 100
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 36.4 bits (83), Expect = 0.024
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 21/83 (25%)
Query: 420 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKC 479
HG+E G L L+++L I IVP INP A
Sbjct: 51 TGGNHGNELQGPILARRLVKWLPEAQRCGRII----------IVPEINPLAVQAWTR--- 97
Query: 480 DSLDGYVGRKNAHGVDLNRNFPD 502
G +LNR FP
Sbjct: 98 --------NTPIDGKNLNRVFPG 112
Score = 34.5 bits (78), Expect = 0.10
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 20/79 (25%)
Query: 91 DSPDGRTLMKPMFKY----------VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQL 140
D L P+F HG+E G L L+++L I
Sbjct: 26 KGADCEALSLPVFSCNRGEGPSLLITGGNHGNELQGPILARRLVKWLPEAQRCGRII--- 82
Query: 141 LNSTDIYIVPSINPDGFAA 159
IVP INP A
Sbjct: 83 -------IVPEINPLAVQA 94
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 35.1 bits (81), Expect = 0.071
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 92 SPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPS 151
SPD +TL YV+ + F +D + + VP
Sbjct: 196 SPDEQTL------YVSQTPEQGHGSVEITAF--------AWRDGALH---DRRHFASVPD 238
Query: 152 INPDGFAAAKEGNL 165
PDGF + G L
Sbjct: 239 GLPDGFCVDRGGWL 252
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 34.8 bits (79), Expect = 0.090
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 26/99 (26%)
Query: 404 VDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIV 463
V N G T++ +HGDE G + L + L ++ + + ++
Sbjct: 48 VKNGSGPTVL-----LTGGVHGDEYEGQIAISDLARRLRPEEVQG----------RVIML 92
Query: 464 PSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD 502
P++N + + +D G D+NR FP
Sbjct: 93 PAVNMPAIQSDT--RLSPVD---------GRDINRCFPG 120
Score = 30.2 bits (67), Expect = 2.2
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK 161
+HGDE G + L + L ++ + + ++P++N +
Sbjct: 59 TGGVHGDEYEGQIAISDLARRLRPEEVQG----------RVIMLPAVNMPAIQSDT 104
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 32.9 bits (74), Expect = 0.32
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 24/83 (28%)
Query: 420 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKC 479
HG+E G VFL+ + + ++ + NP
Sbjct: 16 FGGTHGNELTG----VFLVTHWL------KNGAEVHRAGLEVKPFITNPRAVEKCTR--- 62
Query: 480 DSLDGYVGRKNAHGVDLNRNFPD 502
Y+ DLNR F
Sbjct: 63 -----YIDC------DLNRVFDL 74
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 32.5 bits (73), Expect = 0.40
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 24/85 (28%)
Query: 420 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKC 479
HG+E G V+L +Y + G+ R + + NP AA
Sbjct: 26 TGGTHGNEMCG----VYLARYWLQNPGELQRPSFSA------MPVLANPAATAACCR--- 72
Query: 480 DSLDGYVGRKNAHGVDLNRNFPDQF 504
Y+ R DLNR+ F
Sbjct: 73 -----YLDR------DLNRSCTLTF 86
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 32.0 bits (73), Expect = 0.65
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 92 SPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR-ITQLLNSTDIYIVP 150
SP G ++ +V+ L V + L+ DG + + L P
Sbjct: 225 SPSGDKVV-----FVSYDADVFDHPRDLDVRV--QLMDMDGGNVETLFDLFGGQGTMNSP 277
Query: 151 SINPDG 156
+ +PDG
Sbjct: 278 NWSPDG 283
Score = 29.3 bits (66), Expect = 3.9
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 407 PDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR-ITQLLNSTDIYIVPS 465
P G ++ +V+ L V + L+ DG + + L P+
Sbjct: 226 PSGDKVV-----FVSYDADVFDHPRDLDVRV--QLMDMDGGNVETLFDLFGGQGTMNSPN 278
Query: 466 INPDG 470
+PDG
Sbjct: 279 WSPDG 283
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 31.9 bits (72), Expect = 0.71
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 23/81 (28%)
Query: 423 MHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSL 482
+HG+ET V ++ L+ + +V NP K
Sbjct: 57 IHGNETAP----VEMLDALL-----GAISHGEIPLRWRLLVILGNPPALKQGKR------ 101
Query: 483 DGYVGRKNAHGVDLNRNFPDQ 503
Y D+NR F +
Sbjct: 102 --YCHS------DMNRMFGGR 114
Score = 29.2 bits (65), Expect = 5.2
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 109 MHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAK---EGNL 165
+HG+ET V ++ L+ + +V NP K ++
Sbjct: 57 IHGNETAP----VEMLDALL-----GAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM 107
Query: 166 N 166
N
Sbjct: 108 N 108
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 31.5 bits (71), Expect = 0.95
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 28/105 (26%)
Query: 399 EITHDVDNPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNST 458
E+ + + + ++ +HGDET L+ +I+ + +
Sbjct: 43 EVIPENPTQETKNII-----ISCGIHGDETAPMELVDSIIKDI---------ESGFQKVD 88
Query: 459 DIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQ 503
+ +P+ A + +LNR F ++
Sbjct: 89 ARCLFIIAHPESTLA-------------HTRFLE-ENLNRLFDEK 119
Score = 29.9 bits (67), Expect = 3.0
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 85 EITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNST 144
E+ + + + + ++ +HGDET L+ +I+ + +
Sbjct: 43 EVIPENPTQETKNII-----ISCGIHGDETAPMELVDSIIKDI---------ESGFQKVD 88
Query: 145 DIYIVPSINPDGFAAAK---EGNLN 166
+ +P+ A E NLN
Sbjct: 89 ARCLFIIAHPESTLAHTRFLEENLN 113
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.9
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 264 KYVVTASAPGYEPVTTEPLDVPDTESVRLDFMLGKKNAFSIDQLKNPF 311
K++V A P +E + E +P E + + N +D+L
Sbjct: 162 KFLVIAYEP-FENIAIE---LPPNEILFSENNDMDNNNDGVDELNKKC 205
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin,
peptidoglycan-anchor secreted, virulence, cell adhesion;
1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A
3is0_X 3is1_X
Length = 429
Score = 30.4 bits (67), Expect = 2.2
Identities = 32/282 (11%), Positives = 73/282 (25%), Gaps = 20/282 (7%)
Query: 418 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEG 477
YV + + ++L+ + + LV D + + + D N
Sbjct: 104 NYVDI-YNNVRGSFSLLSWPFKELVTTDKQSVPVGITVAGEDYTQNVIFNYGNRTVPVIS 162
Query: 478 KCDSLDG----YVGRKNAHGVDLNRNFPDQFEYEAKKVYEPETQAIMNFIYSNPFVLSGN 533
+ L + N + + + K P+ + + ++ F S +
Sbjct: 163 DINYLTKDFAEFTTYINQNRAFNT-GSKVRLSGQGFKFTSPDEIEVYKVLNNSQFRDSFS 221
Query: 534 LHGGAVARDYASRNPMMAPGHACGFDFKDGITNGNYWYKVTGGMQDFNYVHSNCFEITME 593
+ + ++ + D D I Y + ++ +
Sbjct: 222 PDYANL-TQVRNPKIIINSDGSATVDLGD-IGTLGYIIRSKPNT-LPDFSGIGVLKSEYT 278
Query: 594 LSCCKYPKASDLKHYWAANKESLIKLIENVHRGVYGI-----VTDTYGNPLPSAIITVRW 648
+ K + + + + V+ V + + +
Sbjct: 279 FTNNKNQRDTRAHASSIQFVRAELAGFGGFGGYVWFDKNNDGVQNDSNAAAAGITVNLLD 338
Query: 649 NDKAVTVT----NRGEY-WRLLARGKYVVTASAP-GYEPVTT 684
T G Y + L G Y+V P GY P
Sbjct: 339 PTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPEGYIPTQA 380
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT;
invasin, intimin, adhesion vaccination, bacterial
immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Length = 414
Score = 29.8 bits (66), Expect = 3.3
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 225 IVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY---WRLLARGKYVVTASAPGYEPVTT 279
+ D YGNP+ A + + W G YV T + +
Sbjct: 319 TMKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLTLGSAAGQLS 376
Score = 29.8 bits (66), Expect = 3.3
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 630 IVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY---WRLLARGKYVVTASAPGYEPVTT 684
+ D YGNP+ A + + W G YV T + +
Sbjct: 319 TMKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLTLGSAAGQLS 376
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III
dependent non-heme intradiol dioxygenase, oxidoredu;
HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A*
1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A*
3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A*
3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Length = 200
Score = 29.2 bits (65), Expect = 3.4
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 222 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY-------WRLLARGKYVVTASAPGY 274
+ G V D G+ + + + V W A GEY + G+ T A +
Sbjct: 51 LLGQVYDGNGHLVRDSFLEV-WQADA-----NGEYQDAYNLENAFNSFGRTATTFDAGEW 104
Query: 275 EPVTTEPLDVPD 286
T +P V +
Sbjct: 105 TLHTVKPGVVNN 116
Score = 29.2 bits (65), Expect = 3.4
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 627 VYGIVTDTYGNPLPSAIITVRWNDKAVTVTNRGEY-------WRLLARGKYVVTASAPGY 679
+ G V D G+ + + + V W A GEY + G+ T A +
Sbjct: 51 LLGQVYDGNGHLVRDSFLEV-WQADA-----NGEYQDAYNLENAFNSFGRTATTFDAGEW 104
Query: 680 EPVTTEPLDVPD 691
T +P V +
Sbjct: 105 TLHTVKPGVVNN 116
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 29.6 bits (66), Expect = 3.8
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 23/79 (29%)
Query: 423 MHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPSINPDGFAAAKEGKCDSL 482
+HG+ET + ++ ++ D L +V N D
Sbjct: 55 VHGNETAP----IEVVDGML-----TDIAAGQLALNCRLLVMFANLDAIRQGV------- 98
Query: 483 DGYVGRKNAHGVDLNRNFP 501
Y D+NR F
Sbjct: 99 -RYGNY------DMNRLFN 110
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein;
HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP:
b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Length = 492
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 226 VTDTYGNPLPSAIITVRWNDKA---VTVTNRGEY---WRLLARGKYVVTASAPGYEPVTT 279
+ DTYG+P A + +T N G Y G VT G
Sbjct: 132 LKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVP 191
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 631 VTDTYGNPLPSAIITVRWNDKA---VTVTNRGEY---WRLLARGKYVVTASAPGYEPVTT 684
+ DTYG+P A + +T N G Y G VT G
Sbjct: 132 LKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVP 191
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 28.7 bits (64), Expect = 6.6
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 212 IKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVT---NRGEYW-RLLARGKYVV 267
L V + G+ A + ++ K V GE+ L G+Y V
Sbjct: 189 KNLYRFEKNYVTAGILVQ-GDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGEYTV 247
Query: 268 TASAPGYEPVTTEPLDVPDTESVRL 292
A G T V D +SV L
Sbjct: 248 EIDADGKSYSDTV---VIDDKSVDL 269
Score = 28.7 bits (64), Expect = 6.6
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 617 IKLIENVHRGVYGIVTDTYGNPLPSAIITVRWNDKAVTVT---NRGEYW-RLLARGKYVV 672
L V + G+ A + ++ K V GE+ L G+Y V
Sbjct: 189 KNLYRFEKNYVTAGILVQ-GDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGEYTV 247
Query: 673 TASAPGYEPVTTEPLDVPDTESVRL 697
A G T V D +SV L
Sbjct: 248 EIDADGKSYSDTV---VIDDKSVDL 269
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 28.6 bits (64), Expect = 7.0
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 19/75 (25%)
Query: 92 SPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITQLLNSTDIYIVPS 151
S D + L +V ET L ++ D Q +T Y
Sbjct: 190 STDEKVL------WVT-----ETTANRLHRIALE-------DDGVTIQPFGATIPYYFTG 231
Query: 152 I-NPDGFAAAKEGNL 165
PD + NL
Sbjct: 232 HEGPDSCCIDSDDNL 246
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A
{Escherichia coli}
Length = 869
Score = 28.6 bits (63), Expect = 8.9
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 524 YSNPFVLSGNLHGGAVARDYASRNPMMA--PGHACGF-DFKDGITNGNYWY 571
Y+N + G GG + ++ + GH G + DG +
Sbjct: 389 YANGIQVHGGSGGGGIVTLDSTLGNEFSHDVGHNYGLGHYVDGFKGSVHRS 439
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
HET: PE5; 1.93A {Bacillus subtilis}
Length = 527
Score = 28.6 bits (63), Expect = 9.3
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 494 VDLNRNFPDQFEYEAKKVYEPETQAIMNFIY----SNPFVLSGNLHGGAVARDYASRNPM 549
+ + + ++ Y + + ++NFI +N VL+G++H + +
Sbjct: 337 WNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFEK- 395
Query: 550 MAPGHACGFDF-KDGITNGNYWYKVTGGMQ 578
G +F IT+G
Sbjct: 396 -TSSKIFGAEFVGTSITSGGNGADKRADTD 424
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,267,880
Number of extensions: 708164
Number of successful extensions: 1762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1650
Number of HSP's successfully gapped: 109
Length of query: 710
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 610
Effective length of database: 3,909,693
Effective search space: 2384912730
Effective search space used: 2384912730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)