RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11075
(195 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 185 bits (471), Expect = 2e-57
Identities = 74/187 (39%), Positives = 114/187 (60%), Gaps = 5/187 (2%)
Query: 5 VPSLSLLLCHVTLSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYP 64
+P+L LL + ++ A T ED + Y + +L+ K+YP
Sbjct: 1 MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESF--LQQPHYASQEQLEDLFAGLEKAYP 58
Query: 65 HLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLI 124
+ + +G+S++GRNL A++I+ + R L+ P KY+ANMHGDETVG L+V++
Sbjct: 59 NQAKVHFLGRSLEGRNLLALQIS---RNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMA 115
Query: 125 QYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNR 184
QYL+ + + +L+NSTDIY+VP++NPDG+A ++EG C+SL YVGR NA +DLNR
Sbjct: 116 QYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNR 175
Query: 185 NFPDQFE 191
+FPD+ E
Sbjct: 176 DFPDRLE 182
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 176 bits (447), Expect = 8e-54
Identities = 58/149 (38%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
R++ +L + K P + R +IG+SV+GR+L+ +E + D P ++P K
Sbjct: 5 RHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFS---DHPGIHEPLEPEVK 61
Query: 105 YVANMHGDETVGYALMVFLIQYLVLK-DGKDDRITKLLNSTDIYIVPSINPDGFAAAKEG 163
YV NMHG+E +G LM+ L ++L + ++ RI +L+ T I+I+PS+NPDG+ A
Sbjct: 62 YVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQ 121
Query: 164 KCDSLDGYVGRKNAHGVDLNRNFPDQFEY 192
+ VGR NA+GVDLNRNFPD Y
Sbjct: 122 GPNKPGYLVGRNNANGVDLNRNFPDLNTY 150
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 173 bits (441), Expect = 2e-53
Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
R+++ ++++ F+ + YP + R ++GKSV+ R L+ +EI+ D+P +P FK
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEIS---DNPGIHEAGEPEFK 65
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGK 164
Y+ NMHG+E VG L++ LI+YL G D +T L+ ST I+I+PS+NPDG+ ++EG
Sbjct: 66 YIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 125
Query: 165 CDSLDGYVGRKNAHGVDLNRNFPDQF 190
G VGR N++ DLNRNFPDQF
Sbjct: 126 R---GGTVGRNNSNNYDLNRNFPDQF 148
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 164 bits (417), Expect = 2e-49
Identities = 71/149 (47%), Positives = 92/149 (61%), Gaps = 6/149 (4%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
Y+ ++AF+ ++Y + +IGKSV+GRNLW + + P + P FK
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVG---RFPKEHRIGIPEFK 60
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGK 164
YVANMHGDETVG L++ LI YLV DGKD IT L+NST I+I+PS+NPDGF A K+
Sbjct: 61 YVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPD 120
Query: 165 CDSLDGYVGRKNAHGVDLNRNFPDQFEYE 193
C G +N + DLNRNFPD FEY
Sbjct: 121 CYYSIGR---ENYNQYDLNRNFPDAFEYN 146
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 147 bits (374), Expect = 5e-44
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
Y+N E+ I +YP++V+ +IGKS +GR LWAV+I+ +V + + +P
Sbjct: 7 SGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN----EPEV 62
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEG 163
Y A H E + + ++ + D RIT L+N+ +IYIV +INPDG
Sbjct: 63 LYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISS 122
Query: 164 KCDSLDGYVGRKN--------AHGVDLNRNFPDQF 190
RKN G DLNRN+ ++
Sbjct: 123 GSYKS----WRKNRQPNSGSSYVGTDLNRNYGYKW 153
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 107 bits (270), Expect = 7e-29
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 42 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKP 101
+ Y+ E+ + V +P LV IG S + R + ++ + D KP
Sbjct: 2 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD--------KP 53
Query: 102 MFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAK 161
A +H E V A ++ +V GKD IT +L++ DI+++P NPDG+ ++
Sbjct: 54 AIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQ 113
Query: 162 EGKCDSLDGYVGRKNA---------HGVDLNRNFPDQF 190
+ + RK GVD NRN+ F
Sbjct: 114 TK--NRM----WRKTRSKVSAGSLCVGVDPNRNWDAGF 145
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 107 bits (268), Expect = 2e-28
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 20/161 (12%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
S + Y++ + + +P L R IG S + R ++ ++ +
Sbjct: 2 SNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVR---- 57
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
+P A +H E + A ++ + +V +D IT +L DI+++P NPDG+
Sbjct: 58 --RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 115
Query: 158 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQF 190
+ + L RK G D NRN+ F
Sbjct: 116 VYTQTQ--NRL----WRKTRSRNPGSSCIGADPNRNWNASF 150
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 107 bits (268), Expect = 7e-28
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
S + Y+ E+ + V +P LV IG S + R + ++ + D
Sbjct: 93 RRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD-- 150
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSIN 153
KP A +H E V A ++ +V GKD IT +L++ DI+++P N
Sbjct: 151 ------KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTN 204
Query: 154 PDGFAAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFPDQF 190
PDG+ ++ + + RK GVD NRN+ F
Sbjct: 205 PDGYVFSQTK--NRMW----RKTRSKVSGSLCVGVDPNRNWDAGF 243
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 104 bits (261), Expect = 2e-27
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
+ G ++Y N ++A+ + P L+ IG + G N++ +++ +
Sbjct: 1 TTGHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN----- 55
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
KP H E + +A + ++ VL G + +T+ LN D Y++P +N DG+
Sbjct: 56 --KPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGY 113
Query: 158 AAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFPDQF 190
+ + RK G D NRNF +
Sbjct: 114 IYTWTK--NRM----WRKTRSTNAGTTCIGTDPNRNFDAGW 148
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 103 bits (259), Expect = 4e-27
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 1 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 56
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 57 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 114
Query: 158 AAAKEGKCDSLDGYVGRKN--------AHGVDLNRNFP 187
+ D + RKN G DLNRNF
Sbjct: 115 DYTWKK--DRM----WRKNRSLHEKNACVGTDLNRNFA 146
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 104 bits (262), Expect = 7e-27
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 31 TGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDV 90
++ + + + ++ E+DA++ + K +P++V GKS +GR++ + I+
Sbjct: 106 AAKSNSTRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIS--- 162
Query: 91 DSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVP 150
+ + + KP+ + +H E V ++ I LV D + L+N+ D I+P
Sbjct: 163 -TTNFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLV----IDVTESDLINNIDWIILP 217
Query: 151 SINPDGFAAAKEGKC----DSLDGYVGRKNAHGVDLNRNFP 187
NPDG+ G + GY+ GVDLNRNF
Sbjct: 218 VANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFG 258
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 102 bits (255), Expect = 1e-26
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
+ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + +
Sbjct: 4 TNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN----- 58
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
+P +H E + A V+ + G+D T +L+S DI++ NPDGF
Sbjct: 59 --RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGF 116
Query: 158 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQF 190
A + L RK GVD NRN+ F
Sbjct: 117 AFTHSQ--NRL----WRKTRSVTSSSLCVGVDANRNWDAGF 151
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 102 bits (255), Expect = 1e-26
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 25/161 (15%)
Query: 41 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMK 100
+ Y +D ++ + YP + +S +GR + ++I+ + + K
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKIS----TTNFEDENK 56
Query: 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAA 160
P+ +H E + + + I LV +D LL D ++P +NPDG+
Sbjct: 57 PVIFIDGGIHAREWISPPSVTWAIHKLV----EDVTENDLLEKFDWILLPVVNPDGYKYT 112
Query: 161 KEGKCDSLDGYVGRKNA-----------HGVDLNRNFPDQF 190
+ RK G D NRNF +
Sbjct: 113 FTN--ERF----WRKTRSTNNNPLSQICRGADGNRNFDFVW 147
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 100 bits (250), Expect = 2e-25
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 17 LSTAADYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSV 76
L D D ++ S + Y++ + + +P L R IG S
Sbjct: 77 LQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSF 136
Query: 77 QGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR 136
+ R ++ ++ + +P A +H E + A ++ + +V +D
Sbjct: 137 ENRPMYVLKFSTGKGVR------RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPA 190
Query: 137 ITKLLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPD 188
IT +L DI+++P NPDG+ + + L RK G D NRN+
Sbjct: 191 ITSILEKMDIFLLPVANPDGYVYTQTQ--NRL----WRKTRSRNPGSSCIGADPNRNWNA 244
Query: 189 QF 190
F
Sbjct: 245 SF 246
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 99.9 bits (249), Expect = 3e-25
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
+ G ++Y ++A+ + P L+ IG + +GR ++ +++ +
Sbjct: 92 SRVRATGHSYEKYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQN- 150
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSIN 153
KP H E + A + ++ V G++ ++T+LLN D Y++P +N
Sbjct: 151 ------KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLN 204
Query: 154 PDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQFEYE 193
DG+ RK G D NRNF +
Sbjct: 205 IDGYIYTWTKSR------FWRKTRSTHTGSSCIGTDPNRNFDAGWCEI 246
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 97.6 bits (243), Expect = 2e-24
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
++ ++Y++ E+ ++I + YP +V IG S + L+ ++++
Sbjct: 93 ASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA---- 148
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
K +H E + A ++ + + GK+ T LL D YI+P +N DG+
Sbjct: 149 --KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGY 206
Query: 158 AAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFP 187
+ D + RKN G DLNRNF
Sbjct: 207 DYTWKK--DRM----WRKNRSLHEKNACVGTDLNRNFA 238
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 96.8 bits (241), Expect = 4e-24
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 21/165 (12%)
Query: 34 EDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSP 93
++ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + +
Sbjct: 95 RARTTSTFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSN- 153
Query: 94 DGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSIN 153
+P + +H E + A V+ + + G++ T +L+S DI++ N
Sbjct: 154 ------RPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTN 207
Query: 154 PDGFAAAKEGKCDSLDGYVGRKNA--------HGVDLNRNFPDQF 190
P+GFA + L RK G D NRN+ F
Sbjct: 208 PNGFAFTHSD--NRL----WRKTRSKASGSLCVGSDSNRNWDAGF 246
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 90.3 bits (223), Expect = 8e-22
Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 19/173 (10%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
Y + + DS Y+ F+ + +G++V+GR +
Sbjct: 108 SYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQ--MPQASVVELGRTVEGRPM 165
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKD--GKDDRITK 139
V + +PD K +A H E++ + L++ LV D K
Sbjct: 166 SLVVL----GTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARK 221
Query: 140 LLNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFEY 192
L + YIVP++NPDG R NA G +LNR + +
Sbjct: 222 LYDHATFYIVPNMNPDGSVHGNL-----------RTNAAGANLNREWMEPDAE 263
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 89.8 bits (222), Expect = 1e-21
Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 20/170 (11%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
+D D L + + + + + + L V +G SVQGR++
Sbjct: 99 PSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDI 158
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLL 141
+ + DS +A H E + M LI+ L D + +LL
Sbjct: 159 ELLRVRRHPDSH-------LKLWVIAQQHPGEHMAEWFMEGLIERLQ--RPDDTEMQRLL 209
Query: 142 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQFE 191
D+Y+VP++NPDG R NA G DLNR + +
Sbjct: 210 EKADLYLVPNMNPDGAFHGNL-----------RTNAAGQDLNRAWLEPSA 248
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 82.5 bits (203), Expect = 5e-19
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 22/167 (13%)
Query: 22 DYYFDFDDLTGLEDADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNL 81
+Y ++ D ++ I Y+ I + LV E +G ++ GR++
Sbjct: 106 EYKDGKLSISVELDCEAIQIAYFTPYSYERHLDLI--SAVQLHPLVSTEHLGLTLDGRDM 163
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLL 141
V++ D S A H ET+ L+ L+ L+ D LL
Sbjct: 164 TLVKVGDDDPSK-------KSIWITARQHPGETMAEWLVEGLLNQLL--DNDCPTSKALL 214
Query: 142 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD 188
+ + YIVP++NPDG R NA G +LNR +
Sbjct: 215 DKANFYIVPNMNPDGSVRGHL-----------RTNAVGANLNREWQT 250
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 72.5 bits (177), Expect = 8e-16
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 28/152 (18%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
S ++DAF + + L + SV + + P
Sbjct: 17 IFNCQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSD-------LPSL 69
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEG 163
+ HG+E G M+ ++ L L ++ ++P +NP GF A
Sbjct: 70 LISSGFHGEEAAGPWGMLHFLRGLQ---------PALFERVNLSLLPLVNPTGFKAGH-- 118
Query: 164 KCDSLDGYVGRKNAHGVDLNRNFPDQFEYEAK 195
R N G + NR F +
Sbjct: 119 ----------RFNRFGENPNRGFTLENGKPTP 140
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 68.6 bits (167), Expect = 2e-14
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 28/150 (18%)
Query: 44 QRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMF 103
ST++ F + + + G + + + + P
Sbjct: 16 IFECQSTDIQRF-YSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAG------LPNL 68
Query: 104 KYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEG 163
A HG+E+ G ++ + L +L ++ ++P +NP GFA
Sbjct: 69 LISAGFHGEESAGPWGLLHFLSQLD---------GELFKRVNLSVLPLVNPTGFAKGH-- 117
Query: 164 KCDSLDGYVGRKNAHGVDLNRNFPDQFEYE 193
R N G + NR F +
Sbjct: 118 ----------RFNELGENPNRGFFIENGKA 137
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 42.2 bits (98), Expect = 4e-05
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 82 WAVEITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLL 141
++ + G ++ AN+HG E G A++ L++ L +
Sbjct: 20 LSLPVYRFKGKGAGPSVY-----IQANVHGAEVQGNAVIYQLMKLLEHYE---------- 64
Query: 142 NSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAH-GVDLNRNFPDQFE 191
DI +VP NP G S + +GR + GV+ NR + D
Sbjct: 65 LLGDISLVPLANPLGINQK------SGEFTLGRFDPITGVNWNREYLDHGF 109
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 38.7 bits (89), Expect = 5e-04
Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 21/83 (25%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
HGDE G + L +D I IVP N F A+
Sbjct: 55 TGANHGDEYEGPVALQELAATTRAEDVTGRLI----------IVPYFNYPAFRASAR--- 101
Query: 166 DSLDGYVGRKNAHGVDLNRNFPD 188
+LNR FP
Sbjct: 102 --------TSPIDRGNLNRAFPG 116
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 37.2 bits (85), Expect = 0.002
Identities = 25/108 (23%), Positives = 31/108 (28%), Gaps = 31/108 (28%)
Query: 91 DSPDGRTLMKPMFKY----------VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKL 140
D L P+F HG+E G L L+++L I
Sbjct: 26 KGADCEALSLPVFSCNRGEGPSLLITGGNHGNELQGPILARRLVKWLPEAQRCGRII--- 82
Query: 141 LNSTDIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD 188
IVP INP A G +LNR FP
Sbjct: 83 -------IVPEINPLAVQAWTR-----------NTPIDGKNLNRVFPG 112
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 34.5 bits (78), Expect = 0.015
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
+HGDE G + L + L ++ + + ++P++N + +
Sbjct: 59 TGGVHGDEYEGQIAISDLARRLRPEEVQG----------RVIMLPAVNMPAIQSDT--RL 106
Query: 166 DSLDGYVGRKNAHGVDLNRNFPD 188
+D G D+NR FP
Sbjct: 107 SPVD---------GRDINRCFPG 120
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 32.5 bits (73), Expect = 0.062
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 24/83 (28%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
HG+E G VFL+ + + ++ + NP
Sbjct: 16 FGGTHGNELTG----VFLVTHWL------KNGAEVHRAGLEVKPFITNPRAVEKCTR--- 62
Query: 166 DSLDGYVGRKNAHGVDLNRNFPD 188
Y+ DLNR F
Sbjct: 63 -----YIDC------DLNRVFDL 74
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 32.1 bits (72), Expect = 0.078
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 24/85 (28%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
HG+E G V+L +Y + G+ R + + NP AA
Sbjct: 26 TGGTHGNEMCG----VYLARYWLQNPGELQRPSFSA------MPVLANPAATAACCR--- 72
Query: 166 DSLDGYVGRKNAHGVDLNRNFPDQF 190
Y+ R DLNR+ F
Sbjct: 73 -----YLDR------DLNRSCTLTF 86
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 31.6 bits (72), Expect = 0.13
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 92 SPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDR-ITKLLNSTDIYIVP 150
SP G ++ +V+ L V + L+ DG + + L P
Sbjct: 225 SPSGDKVV-----FVSYDADVFDHPRDLDVRV--QLMDMDGGNVETLFDLFGGQGTMNSP 277
Query: 151 SINPDG 156
+ +PDG
Sbjct: 278 NWSPDG 283
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 31.2 bits (70), Expect = 0.18
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 23/81 (28%)
Query: 109 MHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKCDSL 168
+HG+ET V ++ L+ + +V NP K
Sbjct: 57 IHGNETAP----VEMLDALL-----GAISHGEIPLRWRLLVILGNPPALKQGKR------ 101
Query: 169 DGYVGRKNAHGVDLNRNFPDQ 189
Y D+NR F +
Sbjct: 102 --YCHS------DMNRMFGGR 114
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 31.1 bits (70), Expect = 0.20
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 28/105 (26%)
Query: 85 EITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNST 144
E+ + + + + ++ +HGDET L+ +I+ + +
Sbjct: 43 EVIPENPTQETKNII-----ISCGIHGDETAPMELVDSIIKDI---------ESGFQKVD 88
Query: 145 DIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPDQ 189
+ +P+ A + +LNR F ++
Sbjct: 89 ARCLFIIAHPESTLA-------------HTRFLE-ENLNRLFDEK 119
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 30.5 bits (69), Expect = 0.31
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 92 SPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPS 151
SPD +TL YV+ + F +D + + VP
Sbjct: 196 SPDEQTL------YVSQTPEQGHGSVEITAF--------AWRDGALH---DRRHFASVPD 238
Query: 152 INPDGFAAAKEG 163
PDGF + G
Sbjct: 239 GLPDGFCVDRGG 250
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 28.8 bits (64), Expect = 1.2
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 23/79 (29%)
Query: 109 MHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKCDSL 168
+HG+ET + ++ ++ D L +V N D
Sbjct: 55 VHGNETAP----IEVVDGML-----TDIAAGQLALNCRLLVMFANLDAIRQGV------- 98
Query: 169 DGYVGRKNAHGVDLNRNFP 187
Y D+NR F
Sbjct: 99 -RYGNY------DMNRLFN 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.5
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 48/129 (37%)
Query: 40 GIDLQRYYNST-------ELDAF--------ILKTVKSYPHLVRAETIGKSVQGRNLWA- 83
G+DL Y S D IL V + P + G+ +G+ +
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE--KGKRIREN 1687
Query: 84 -VEITHDVDSPDGRTLMKPMFKYVA------NMHGDE--------------TVGYALMVF 122
+ + DG+ + +FK + ++ + A
Sbjct: 1688 YSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA--- 1743
Query: 123 LIQYLVLKD 131
+ LK
Sbjct: 1744 ---FEDLKS 1749
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.1
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 6/24 (25%)
Query: 137 ITKLLNSTDIYIVPSINPDGFAAA 160
+ KL S +Y D A A
Sbjct: 22 LKKLQASLKLY-----ADDS-APA 39
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 26.7 bits (58), Expect = 5.7
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 52 LDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFKYVANMHG 111
L+ K V A + + V + L + +
Sbjct: 188 LNMNRNTARKRLDIYVLA--AARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGV 245
Query: 112 DETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
D + + + + ++ D+R+ + N+ D+ + S +GF
Sbjct: 246 DNVFTHLNKIMINRTVL----TDERVDMMYNACDVIVNCSSG-EGF 286
>3jqo_A TRAF protein; helical outer membrane TM, outer membrane protein
complex, plasmid, transport protein; HET: LDA; 2.60A
{Escherichia coli}
Length = 227
Score = 26.1 bits (57), Expect = 7.3
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 86 ITHDVDSPDGRTLMKPM-FKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNST 144
++ DV S DG + + G G A + L + + +
Sbjct: 70 VSQDVYSADGLVRLIDKGSWVDGQITGGIKDGQARVFVLWERIRNDQDG---------TI 120
Query: 145 DIYIVPSINPDGFAA 159
N G A
Sbjct: 121 VNIDSAGTNSLGSAG 135
>2bhv_A COMB10; bacterial protein, bacterial type IV secretion; 3.00A
{Helicobacter pylori}
Length = 246
Score = 25.9 bits (56), Expect = 8.0
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 86 ITHDVDSPDGRTLMKPM-FKYVANMHGDETVGYALMVFLIQYLVLKDGKD 134
+ D+ + G+ ++ P K + + +G + + ++ G +
Sbjct: 68 VESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRIITPHGIN 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.406
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,088,744
Number of extensions: 182103
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 41
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)