RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11075
(195 letters)
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 112 bits (281), Expect = 7e-31
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 35 DADSAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPD 94
++ + + + ++ E+DA++ + K +P++V GKS +GR++ + I+ + +
Sbjct: 1 NSTRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIS----TTN 56
Query: 95 GRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINP 154
+ KP+ + +H E V ++ I LV D + L+N+ D I+P NP
Sbjct: 57 FQDASKPVVMMQSLLHCREWVTLPATLYAIHKLV----IDVTESDLINNIDWIILPVANP 112
Query: 155 DGFAAAKEGKCDSL----DGYVGRKNAHGVDLNRNFPDQF 190
DG+ G GY+ GVDLNRNF +
Sbjct: 113 DGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNW 152
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 111 bits (277), Expect = 3e-30
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 42 DLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKP 101
Y+N E+ I +YP++V+ +IGKS +GR LWAV+I+ +V + + +P
Sbjct: 5 YDSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN----EP 60
Query: 102 MFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAK 161
Y A H E + + ++ + D RIT L+N+ +IYIV +INPDG
Sbjct: 61 EVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDI 120
Query: 162 EGKCDSLDGYVGRKN----AHGVDLNRNFPDQFEYE 193
+ N G DLNRN+ ++
Sbjct: 121 SSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCC 156
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 109 bits (273), Expect = 5e-30
Identities = 71/148 (47%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
Y+ ++AF+ ++Y + +IGKSV+GRNLW + + P + P FK
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVG---RFPKEHRIGIPEFK 60
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGK 164
YVANMHGDETVG L++ LI YLV DGKD IT L+NST I+I+PS+NPDGF A K+
Sbjct: 61 YVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPD 120
Query: 165 CDSLDGYVGRKNAHGVDLNRNFPDQFEY 192
C G +N + DLNRNFPD FEY
Sbjct: 121 CYYSIGR---ENYNQYDLNRNFPDAFEY 145
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 109 bits (272), Expect = 1e-29
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
+ + Y+ E+ F+ V +P LV IG+S +GR ++ ++ + +
Sbjct: 4 TNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN----- 58
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
+P +H E + A V+ + G+D T +L+S DI++ NPDGF
Sbjct: 59 --RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGF 116
Query: 158 AAAKEGKCDSLDG--YVGRKNAHGVDLNRNFPDQF 190
A GVD NRN+ F
Sbjct: 117 AFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGF 151
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 107 bits (268), Expect = 5e-29
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
S + Y+ E+ + V +P LV IG S + R + ++ + D
Sbjct: 3 SGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------ 56
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
KP A +H E V A ++ +V GKD IT +L++ DI+++P NPDG+
Sbjct: 57 --KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGY 114
Query: 158 AAAKEGKCDSLDG--YVGRKNAHGVDLNRNFPDQF 190
++ V GVD NRN+ F
Sbjct: 115 VFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGF 149
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 105 bits (263), Expect = 2e-28
Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
Query: 38 SAGIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRT 97
S + Y++ + + +P L R IG S + R ++ ++ + G+
Sbjct: 1 SNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFS------TGKG 54
Query: 98 LMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGF 157
+ +P A +H E + A ++ + +V +D IT +L DI+++P NPDG+
Sbjct: 55 VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 114
Query: 158 AAAKEGKCDSLDG--YVGRKNAHGVDLNRNFPDQF 190
+ + G D NRN+ F
Sbjct: 115 VYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASF 149
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 104 bits (260), Expect = 6e-28
Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 6/146 (4%)
Query: 45 RYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMKPMFK 104
R+++ ++++ F+ + YP + R ++GKSV+ R L+ +EI+ D+P +P FK
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEIS---DNPGIHEAGEPEFK 65
Query: 105 YVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGK 164
Y+ NMHG+E VG L++ LI+YL G D +T L+ ST I+I+PS+NPDG+ ++EG
Sbjct: 66 YIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGD 125
Query: 165 CDSLDGYVGRKNAHGVDLNRNFPDQF 190
G N++ DLNRNFPDQF
Sbjct: 126 RGGTVGR---NNSNNYDLNRNFPDQF 148
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 101 bits (251), Expect = 2e-26
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 41 IDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLMK 100
+ Y +D ++ + YP + +S +GR + ++I+ + + K
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKIS----TTNFEDENK 56
Query: 101 PMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAA 160
P+ +H E + + + I LV +D LL D ++P +NPDG+
Sbjct: 57 PVIFIDGGIHAREWISPPSVTWAIHKLV----EDVTENDLLEKFDWILLPVVNPDGYKYT 112
Query: 161 KE-----GKCDSLDGYVGRKNAHGVDLNRNFPDQF 190
K S + + G D NRNF +
Sbjct: 113 FTNERFWRKTRSTNNNPLSQICRGADGNRNFDFVW 147
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 96.4 bits (239), Expect = 6e-25
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 40 GIDLQRYYNSTELDAFILKTVKSYPHLVRAETIGKSVQGRNLWAVEITHDVDSPDGRTLM 99
G ++Y N ++A+ + P L+ IG + G N++ +++ +
Sbjct: 1 GHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN------- 53
Query: 100 KPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAA 159
KP H E + +A + ++ VL G + +T+ LN D Y++P +N DG+
Sbjct: 54 KPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIY 113
Query: 160 AKEGKCDSLDG--YVGRKNAHGVDLNRNFPDQF 190
G D NRNF +
Sbjct: 114 TWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGW 146
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 28/104 (26%)
Query: 85 EITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNST 144
E+ + ++ +HGDET + L+ + DD ++
Sbjct: 41 EVIPAQTDAATKNMV-----ISCGIHGDETAP----MELLDKWI-----DDIVSGFQPVA 86
Query: 145 DIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFPD 188
+ + +P ++ + +LNR F D
Sbjct: 87 ERCLFIMAHPQATVRHVR--------FIEQ------NLNRLFDD 116
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 35.0 bits (80), Expect = 0.003
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 28/97 (28%)
Query: 91 DSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVP 150
D+ +++ +HG+ET ++ ++ D L +V
Sbjct: 41 DARGADSVL-----LSCGVHGNETAPIEVVDGMLT---------DIAAGQLALNCRLLVM 86
Query: 151 SINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFP 187
N D Y D+NR F
Sbjct: 87 FANLDAIRQGVR--------YGNY------DMNRLFN 109
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 33.1 bits (75), Expect = 0.014
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
A +HG+ET V ++ L+ + +V NP K
Sbjct: 49 SAGIHGNETAP----VEMLDALL-----GAISHGEIPLRWRLLVILGNPPALKQGKRYC- 98
Query: 166 DSLDGYVGRKNAHGVDLNRNFPDQFE 191
D+NR F +++
Sbjct: 99 -------------HSDMNRMFGGRWQ 111
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 32.3 bits (73), Expect = 0.027
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 85 EITHDVDSPDGRTLMKPMFKYVANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNST 144
E+ + + + + ++ +HGDET + L+ ++ D +
Sbjct: 40 EVIPENPTQETKNII-----ISCGIHGDETAP----MELVDSII-----KDIESGFQKVD 85
Query: 145 DIYIVPSINPDGFAAAKEGKCDSLDGYVGRKNAHGVDLNRNFP 187
+ +P+ A ++ +LNR F
Sbjct: 86 ARCLFIIAHPESTLAHTR--------FLEE------NLNRLFD 114
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 31.1 bits (70), Expect = 0.066
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 24/82 (29%)
Query: 106 VANMHGDETVGYALMVFLIQYLVLKDGKDDRITKLLNSTDIYIVPSINPDGFAAAKEGKC 165
HG+E G VFL+ + + ++ + NP
Sbjct: 13 FGGTHGNELTG----VFLVTHWL------KNGAEVHRAGLEVKPFITNPRAVEKCTR--- 59
Query: 166 DSLDGYVGRKNAHGVDLNRNFP 187
Y+ DLNR F
Sbjct: 60 -----YIDC------DLNRVFD 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.406
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,614
Number of extensions: 32934
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 15
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)