Query psy11077
Match_columns 97
No_of_seqs 102 out of 1415
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:26:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02230 Abhydrolase_2: Phosph 99.7 6.2E-16 1.3E-20 98.0 8.3 91 4-94 56-146 (216)
2 PLN02824 hydrolase, alpha/beta 99.5 4E-14 8.7E-19 92.8 7.8 69 15-88 61-137 (294)
3 COG2267 PldB Lysophospholipase 99.5 1E-13 2.2E-18 91.9 9.2 82 8-91 61-145 (298)
4 TIGR02240 PHA_depoly_arom poly 99.5 6.9E-14 1.5E-18 91.0 6.9 70 15-89 57-127 (276)
5 PF12697 Abhydrolase_6: Alpha/ 99.5 1.9E-13 4.2E-18 84.5 7.7 70 15-89 30-102 (228)
6 PLN02965 Probable pheophorbida 99.5 1.2E-13 2.6E-18 89.1 6.8 68 15-87 36-106 (255)
7 KOG4409|consensus 99.5 9.7E-14 2.1E-18 92.6 6.5 72 15-91 122-198 (365)
8 PLN02298 hydrolase, alpha/beta 99.5 3.3E-13 7.2E-18 89.9 8.7 78 15-92 93-173 (330)
9 PRK10673 acyl-CoA esterase; Pr 99.5 2.1E-13 4.4E-18 87.3 7.2 67 15-86 48-114 (255)
10 KOG1455|consensus 99.5 2.1E-13 4.5E-18 89.6 7.1 80 15-94 88-170 (313)
11 PRK10749 lysophospholipase L2; 99.5 5.7E-13 1.2E-17 89.1 9.3 75 15-90 87-168 (330)
12 PRK03592 haloalkane dehalogena 99.5 3.4E-13 7.4E-18 88.4 7.9 69 15-88 59-128 (295)
13 PLN02385 hydrolase; alpha/beta 99.5 3.2E-13 7E-18 90.8 7.9 77 15-91 121-200 (349)
14 PRK11126 2-succinyl-6-hydroxy- 99.5 5.8E-13 1.2E-17 84.7 8.7 69 15-88 33-102 (242)
15 PRK00870 haloalkane dehalogena 99.5 4.9E-13 1.1E-17 88.1 8.0 70 15-89 79-151 (302)
16 PF00561 Abhydrolase_1: alpha/ 99.4 7.2E-13 1.5E-17 83.0 8.2 68 15-87 6-78 (230)
17 KOG2112|consensus 99.4 2.8E-12 6.1E-17 80.3 8.3 89 1-89 41-129 (206)
18 PHA02857 monoglyceride lipase; 99.4 2.6E-12 5.7E-17 83.4 8.3 74 15-89 58-133 (276)
19 TIGR03611 RutD pyrimidine util 99.4 1.3E-12 2.8E-17 82.8 6.5 71 15-90 45-117 (257)
20 PRK08775 homoserine O-acetyltr 99.4 1.4E-12 3E-17 87.6 6.4 68 15-88 105-173 (343)
21 TIGR03343 biphenyl_bphD 2-hydr 99.4 1.8E-12 3.9E-17 84.1 6.3 68 15-87 66-135 (282)
22 TIGR03101 hydr2_PEP hydrolase, 99.4 3.8E-12 8.2E-17 83.3 7.6 77 15-93 62-139 (266)
23 TIGR03056 bchO_mg_che_rel puta 99.4 3.5E-12 7.7E-17 82.1 7.4 69 15-88 60-130 (278)
24 PRK03204 haloalkane dehalogena 99.4 3.6E-12 7.8E-17 83.7 7.4 69 15-88 66-136 (286)
25 PLN02679 hydrolase, alpha/beta 99.3 4.7E-12 1E-16 85.7 7.8 69 15-88 120-191 (360)
26 TIGR02427 protocat_pcaD 3-oxoa 99.3 1.8E-12 4E-17 81.4 5.2 70 15-89 45-115 (251)
27 PRK06489 hypothetical protein; 99.3 4.3E-12 9.2E-17 85.8 7.2 68 15-87 111-188 (360)
28 PLN02578 hydrolase 99.3 6.6E-12 1.4E-16 84.7 7.9 69 15-88 118-187 (354)
29 TIGR03695 menH_SHCHC 2-succiny 99.3 1.2E-11 2.7E-16 77.4 8.6 71 15-90 33-107 (251)
30 TIGR01250 pro_imino_pep_2 prol 99.3 8.7E-12 1.9E-16 79.9 7.8 69 16-89 60-132 (288)
31 PLN03087 BODYGUARD 1 domain co 99.3 6.9E-12 1.5E-16 87.8 7.5 69 15-88 238-309 (481)
32 PLN02211 methyl indole-3-aceta 99.3 1.1E-11 2.4E-16 81.1 7.2 71 15-89 51-123 (273)
33 PRK10349 carboxylesterase BioH 99.3 8.4E-12 1.8E-16 80.2 6.4 64 15-87 45-108 (256)
34 TIGR01249 pro_imino_pep_1 prol 99.3 9.1E-12 2E-16 82.4 6.6 69 15-88 59-130 (306)
35 COG0400 Predicted esterase [Ge 99.3 2.6E-11 5.6E-16 76.8 8.1 84 3-92 54-138 (207)
36 PLN02894 hydrolase, alpha/beta 99.3 3.4E-11 7.3E-16 82.7 9.2 69 15-88 137-211 (402)
37 TIGR01392 homoserO_Ac_trn homo 99.3 1.8E-11 4E-16 82.4 7.5 57 28-89 106-163 (351)
38 PLN03084 alpha/beta hydrolase 99.3 2.8E-11 6.1E-16 82.7 7.7 70 15-89 159-233 (383)
39 PRK11460 putative hydrolase; P 99.3 1.1E-10 2.3E-15 75.0 9.7 78 10-89 61-139 (232)
40 KOG4178|consensus 99.2 3.7E-11 8.1E-16 79.8 7.1 70 15-89 77-149 (322)
41 PRK07581 hypothetical protein; 99.2 1.1E-11 2.5E-16 82.9 4.8 70 15-89 77-160 (339)
42 TIGR03100 hydr1_PEP hydrolase, 99.2 1.8E-10 3.9E-15 75.4 9.2 75 15-91 63-137 (274)
43 TIGR01738 bioH putative pimelo 99.2 4.7E-11 1E-15 74.8 5.7 66 15-89 36-101 (245)
44 TIGR01607 PST-A Plasmodium sub 99.2 1E-10 2.2E-15 78.5 7.5 76 15-90 80-187 (332)
45 PRK14875 acetoin dehydrogenase 99.2 1.4E-10 3.1E-15 77.9 7.2 69 15-88 163-232 (371)
46 PLN02652 hydrolase; alpha/beta 99.2 3.4E-10 7.3E-15 77.8 8.9 75 15-91 169-248 (395)
47 PRK00175 metX homoserine O-ace 99.1 3.4E-10 7.5E-15 77.1 7.9 57 28-89 126-183 (379)
48 TIGR03230 lipo_lipase lipoprot 99.1 1.8E-09 3.9E-14 75.0 9.7 77 16-92 80-158 (442)
49 PLN02980 2-oxoglutarate decarb 99.1 7.4E-10 1.6E-14 86.5 8.0 69 15-88 1403-1480(1655)
50 cd00707 Pancreat_lipase_like P 99.0 1.9E-09 4E-14 70.9 8.0 64 29-92 87-151 (275)
51 PRK06765 homoserine O-acetyltr 99.0 1.8E-09 3.8E-14 74.2 7.6 58 28-90 140-198 (389)
52 KOG1552|consensus 99.0 7.9E-10 1.7E-14 71.5 5.5 73 15-93 94-168 (258)
53 PLN02511 hydrolase 99.0 1.1E-09 2.3E-14 75.1 6.1 74 15-89 135-211 (388)
54 TIGR01836 PHA_synth_III_C poly 99.0 2.2E-09 4.7E-14 72.4 7.4 73 16-91 101-174 (350)
55 PRK05077 frsA fermentation/res 99.0 2.9E-09 6.3E-14 73.6 7.9 72 15-89 228-301 (414)
56 KOG2564|consensus 99.0 1E-09 2.3E-14 71.9 5.4 68 15-85 108-179 (343)
57 PRK13604 luxD acyl transferase 99.0 1.5E-09 3.3E-14 72.2 5.7 73 15-91 70-144 (307)
58 KOG1454|consensus 98.9 3.2E-09 7E-14 71.4 6.8 72 15-91 92-169 (326)
59 PF00326 Peptidase_S9: Prolyl 98.9 4.7E-09 1E-13 66.1 6.7 62 32-93 42-104 (213)
60 COG0596 MhpC Predicted hydrola 98.9 1E-08 2.2E-13 63.7 7.5 69 15-89 56-124 (282)
61 TIGR01840 esterase_phb esteras 98.9 7.8E-09 1.7E-13 65.3 6.9 53 37-89 78-131 (212)
62 PF10230 DUF2305: Uncharacteri 98.9 2.4E-08 5.2E-13 65.5 8.8 65 27-91 57-125 (266)
63 PRK10985 putative hydrolase; P 98.9 7.3E-09 1.6E-13 69.3 6.2 74 15-89 93-169 (324)
64 PRK10566 esterase; Provisional 98.8 3E-08 6.5E-13 63.5 8.1 52 33-84 86-138 (249)
65 PLN02733 phosphatidylcholine-s 98.8 2.7E-08 5.8E-13 69.3 8.2 71 16-88 127-201 (440)
66 PF12695 Abhydrolase_5: Alpha/ 98.8 5E-08 1.1E-12 57.4 7.4 36 51-87 59-94 (145)
67 TIGR00976 /NonD putative hydro 98.8 1.3E-08 2.8E-13 72.5 5.6 76 15-91 59-135 (550)
68 TIGR02821 fghA_ester_D S-formy 98.8 4.6E-08 9.9E-13 64.1 7.3 56 33-90 120-175 (275)
69 PRK11071 esterase YqiA; Provis 98.7 6.6E-08 1.4E-12 60.5 7.1 50 32-89 45-94 (190)
70 PF06821 Ser_hydrolase: Serine 98.7 3.4E-08 7.3E-13 61.0 5.5 57 27-89 35-92 (171)
71 PLN02442 S-formylglutathione h 98.7 8E-08 1.7E-12 63.4 7.2 56 34-90 125-180 (283)
72 PRK05855 short chain dehydroge 98.7 5.1E-08 1.1E-12 68.9 6.2 66 15-85 57-128 (582)
73 COG1647 Esterase/lipase [Gener 98.7 1.2E-07 2.5E-12 60.5 6.9 72 16-91 49-121 (243)
74 PF07819 PGAP1: PGAP1-like pro 98.7 1.6E-07 3.4E-12 60.3 7.6 60 30-89 58-124 (225)
75 PF00756 Esterase: Putative es 98.6 1.1E-07 2.4E-12 61.1 6.2 57 32-90 96-152 (251)
76 PF10503 Esterase_phd: Esteras 98.6 2.1E-07 4.5E-12 59.6 6.5 51 38-88 81-132 (220)
77 KOG2382|consensus 98.6 1.6E-07 3.5E-12 62.6 5.8 70 15-85 86-156 (315)
78 PRK10439 enterobactin/ferric e 98.6 2.8E-07 6.1E-12 63.8 7.1 57 32-88 267-323 (411)
79 PF06028 DUF915: Alpha/beta hy 98.5 7.7E-07 1.7E-11 58.2 8.1 62 29-91 80-146 (255)
80 TIGR01838 PHA_synth_I poly(R)- 98.5 7.7E-07 1.7E-11 63.4 8.3 74 16-92 227-306 (532)
81 PLN00021 chlorophyllase 98.5 7.9E-07 1.7E-11 59.6 7.2 40 50-89 123-167 (313)
82 COG3208 GrsT Predicted thioest 98.4 6.7E-07 1.4E-11 57.7 5.9 70 16-89 40-113 (244)
83 PF00975 Thioesterase: Thioest 98.4 1.9E-06 4.1E-11 54.5 7.9 59 28-90 45-106 (229)
84 COG3545 Predicted esterase of 98.4 2.5E-06 5.3E-11 52.7 7.0 60 27-92 39-98 (181)
85 PF06500 DUF1100: Alpha/beta h 98.4 5E-07 1.1E-11 62.3 4.3 72 15-88 224-296 (411)
86 KOG2984|consensus 98.4 1.7E-07 3.7E-12 59.4 1.7 70 14-89 77-150 (277)
87 COG2819 Predicted hydrolase of 98.4 1E-06 2.3E-11 57.5 5.3 58 33-92 119-176 (264)
88 cd00741 Lipase Lipase. Lipase 98.4 2.7E-06 5.9E-11 51.2 6.9 61 31-92 7-71 (153)
89 PF03096 Ndr: Ndr family; Int 98.4 1.7E-06 3.8E-11 57.1 6.3 71 15-90 61-136 (283)
90 PRK10162 acetyl esterase; Prov 98.4 4E-06 8.7E-11 56.2 8.2 43 49-91 150-198 (318)
91 TIGR01839 PHA_synth_II poly(R) 98.4 2.3E-06 5E-11 61.1 7.3 65 27-92 263-332 (560)
92 PF02450 LCAT: Lecithin:choles 98.3 2.7E-06 5.9E-11 58.6 7.3 57 30-88 98-160 (389)
93 PF03959 FSH1: Serine hydrolas 98.3 2.3E-06 5E-11 54.3 6.1 72 10-91 69-148 (212)
94 KOG4391|consensus 98.3 1.2E-07 2.6E-12 60.7 0.2 74 15-91 112-187 (300)
95 PF07859 Abhydrolase_3: alpha/ 98.3 6.8E-07 1.5E-11 56.0 3.2 61 30-90 44-112 (211)
96 PF08538 DUF1749: Protein of u 98.3 6E-06 1.3E-10 55.1 7.6 64 28-91 80-151 (303)
97 PF08840 BAAT_C: BAAT / Acyl-C 98.3 4.3E-06 9.4E-11 53.2 6.6 54 36-90 4-58 (213)
98 PLN02872 triacylglycerol lipas 98.2 1.1E-06 2.4E-11 60.6 3.6 59 29-90 137-199 (395)
99 KOG2931|consensus 98.2 4.1E-06 9E-11 55.5 6.0 69 16-89 85-158 (326)
100 PF00151 Lipase: Lipase; Inte 98.2 1.4E-05 3.1E-10 54.1 8.6 65 29-93 125-192 (331)
101 PF02129 Peptidase_S15: X-Pro 98.2 5.5E-06 1.2E-10 54.2 6.4 78 15-92 63-140 (272)
102 PF05728 UPF0227: Uncharacteri 98.2 6.3E-06 1.4E-10 51.6 6.3 55 29-91 40-94 (187)
103 KOG1553|consensus 98.2 5.2E-06 1.1E-10 56.5 5.9 80 7-90 267-347 (517)
104 COG4099 Predicted peptidase [G 98.2 4.2E-06 9.1E-11 55.8 5.3 43 47-89 263-305 (387)
105 KOG4667|consensus 98.2 4.2E-06 9.1E-11 53.5 4.9 75 15-94 68-145 (269)
106 COG2021 MET2 Homoserine acetyl 98.2 7E-06 1.5E-10 55.8 6.2 59 28-91 126-185 (368)
107 COG3509 LpqC Poly(3-hydroxybut 98.2 1.4E-05 3.1E-10 53.1 7.2 56 34-89 124-180 (312)
108 PRK07868 acyl-CoA synthetase; 98.1 1.7E-05 3.6E-10 60.3 8.2 60 29-90 119-179 (994)
109 PF05577 Peptidase_S28: Serine 98.1 2.2E-05 4.7E-10 54.6 8.0 79 16-94 66-154 (434)
110 COG0412 Dienelactone hydrolase 98.1 2.4E-05 5.1E-10 50.6 7.5 58 32-90 90-148 (236)
111 PF05990 DUF900: Alpha/beta hy 98.1 2.1E-05 4.5E-10 50.8 7.2 63 27-90 68-139 (233)
112 PF01738 DLH: Dienelactone hyd 98.1 1.4E-05 3E-10 50.6 6.1 54 32-86 76-130 (218)
113 PF06342 DUF1057: Alpha/beta h 98.0 2.9E-05 6.3E-10 51.4 6.9 66 16-87 69-136 (297)
114 TIGR01849 PHB_depoly_PhaZ poly 98.0 2.5E-05 5.5E-10 54.1 6.9 60 27-92 148-212 (406)
115 PF01764 Lipase_3: Lipase (cla 98.0 1.9E-05 4.1E-10 46.5 5.4 41 33-74 45-85 (140)
116 KOG3724|consensus 98.0 1.8E-05 3.9E-10 58.4 6.2 73 14-86 135-218 (973)
117 PF06057 VirJ: Bacterial virul 98.0 2.4E-05 5.2E-10 49.1 5.5 61 28-89 44-108 (192)
118 PF05677 DUF818: Chlamydia CHL 98.0 3.4E-05 7.4E-10 52.2 6.2 59 15-75 177-237 (365)
119 PF10340 DUF2424: Protein of u 97.9 5E-05 1.1E-09 52.1 6.9 61 26-91 173-238 (374)
120 PF12740 Chlorophyllase2: Chlo 97.9 2.9E-05 6.2E-10 50.9 5.5 39 50-88 88-131 (259)
121 cd00519 Lipase_3 Lipase (class 97.9 4.1E-05 8.9E-10 48.9 6.2 59 29-88 105-168 (229)
122 PRK05371 x-prolyl-dipeptidyl a 97.9 6.5E-05 1.4E-09 55.9 7.9 76 15-90 285-375 (767)
123 PF05448 AXE1: Acetyl xylan es 97.9 8.3E-05 1.8E-09 50.2 7.3 58 31-89 152-210 (320)
124 PF11187 DUF2974: Protein of u 97.9 7.1E-05 1.5E-09 48.1 6.5 52 30-87 67-122 (224)
125 PF03403 PAF-AH_p_II: Platelet 97.9 6.6E-05 1.4E-09 51.7 6.5 38 51-89 226-263 (379)
126 PF06259 Abhydrolase_8: Alpha/ 97.9 0.00027 5.9E-09 44.0 8.6 60 27-86 83-142 (177)
127 KOG1838|consensus 97.9 5.3E-05 1.1E-09 52.4 5.8 74 15-89 160-237 (409)
128 smart00824 PKS_TE Thioesterase 97.8 0.00029 6.4E-09 43.3 8.7 69 16-89 32-103 (212)
129 COG2945 Predicted hydrolase of 97.8 4.5E-05 9.7E-10 48.0 4.9 73 15-89 66-138 (210)
130 COG4782 Uncharacterized protei 97.8 0.0001 2.2E-09 50.3 6.9 62 27-89 166-235 (377)
131 PF01674 Lipase_2: Lipase (cla 97.8 8.9E-05 1.9E-09 47.6 6.4 40 33-74 57-96 (219)
132 PRK10115 protease 2; Provision 97.8 5.9E-05 1.3E-09 55.5 6.0 58 35-92 505-563 (686)
133 TIGR03502 lipase_Pla1_cef extr 97.8 8.6E-05 1.9E-09 55.2 6.8 46 29-74 520-576 (792)
134 PRK10252 entF enterobactin syn 97.8 0.00015 3.2E-09 56.1 8.1 69 16-89 1101-1172(1296)
135 KOG4627|consensus 97.8 1.3E-05 2.9E-10 51.0 1.9 66 27-92 110-176 (270)
136 PTZ00472 serine carboxypeptida 97.8 0.00014 3E-09 51.3 6.9 66 28-93 144-221 (462)
137 PF11288 DUF3089: Protein of u 97.8 0.00019 4.1E-09 45.7 6.8 45 30-74 72-116 (207)
138 COG1075 LipA Predicted acetylt 97.7 0.00013 2.8E-09 49.5 6.2 58 29-91 108-167 (336)
139 COG0627 Predicted esterase [Ge 97.7 0.00025 5.5E-09 47.8 6.9 39 54-92 153-191 (316)
140 PF01083 Cutinase: Cutinase; 97.7 0.00029 6.3E-09 43.8 6.6 60 27-87 56-121 (179)
141 COG0657 Aes Esterase/lipase [L 97.6 0.00037 7.9E-09 46.4 7.2 63 30-92 125-195 (312)
142 COG3243 PhaC Poly(3-hydroxyalk 97.6 0.00013 2.9E-09 50.6 5.1 65 27-92 155-221 (445)
143 COG4947 Uncharacterized protei 97.6 5.3E-05 1.1E-09 47.1 2.8 42 53-94 101-142 (227)
144 PLN02454 triacylglycerol lipas 97.6 0.00044 9.5E-09 48.1 7.3 40 33-73 207-248 (414)
145 COG1506 DAP2 Dipeptidyl aminop 97.6 0.00014 3E-09 52.9 5.2 54 34-88 453-507 (620)
146 PF05057 DUF676: Putative seri 97.6 0.00021 4.5E-09 45.6 5.5 45 29-73 53-98 (217)
147 KOG2183|consensus 97.5 0.00015 3.3E-09 50.4 4.4 67 29-95 142-210 (492)
148 PLN02517 phosphatidylcholine-s 97.5 0.00021 4.6E-09 51.7 5.1 58 30-88 191-263 (642)
149 PRK04940 hypothetical protein; 97.5 0.00071 1.5E-08 42.2 6.9 53 35-91 43-95 (180)
150 KOG1515|consensus 97.5 0.00071 1.5E-08 46.0 7.3 66 29-94 141-213 (336)
151 PLN02571 triacylglycerol lipas 97.5 0.00033 7.1E-09 48.7 5.7 20 54-73 227-246 (413)
152 PLN02162 triacylglycerol lipas 97.5 0.00058 1.2E-08 48.1 6.8 22 51-72 276-297 (475)
153 COG2382 Fes Enterochelin ester 97.5 0.00023 5E-09 47.4 4.6 61 31-91 155-215 (299)
154 COG4814 Uncharacterized protei 97.5 0.00056 1.2E-08 44.8 5.9 59 30-89 114-177 (288)
155 COG3319 Thioesterase domains o 97.4 0.00093 2E-08 43.9 6.9 59 27-89 43-104 (257)
156 PLN00413 triacylglycerol lipas 97.4 0.00069 1.5E-08 47.8 6.6 22 51-72 282-303 (479)
157 KOG2100|consensus 97.4 0.00044 9.6E-09 51.5 5.8 43 49-91 604-647 (755)
158 PF07224 Chlorophyllase: Chlor 97.4 0.0004 8.7E-09 45.8 5.0 65 27-91 92-160 (307)
159 PF12715 Abhydrolase_7: Abhydr 97.4 0.00025 5.3E-09 48.9 4.1 48 38-86 210-258 (390)
160 PF11339 DUF3141: Protein of u 97.4 0.0012 2.5E-08 47.3 7.3 63 29-91 116-178 (581)
161 KOG2369|consensus 97.4 0.00065 1.4E-08 47.8 5.9 48 28-76 158-205 (473)
162 COG3571 Predicted hydrolase of 97.4 0.00063 1.4E-08 42.0 5.1 55 31-90 72-127 (213)
163 PF12048 DUF3530: Protein of u 97.4 0.0021 4.6E-08 43.2 8.2 42 51-92 191-233 (310)
164 PLN02633 palmitoyl protein thi 97.3 0.00095 2.1E-08 44.9 6.1 36 53-88 94-131 (314)
165 PLN02310 triacylglycerol lipas 97.3 0.0012 2.7E-08 45.8 6.5 21 53-73 209-229 (405)
166 PLN02606 palmitoyl-protein thi 97.3 0.0012 2.5E-08 44.3 6.1 36 53-88 95-132 (306)
167 COG3458 Acetyl esterase (deace 97.3 0.00023 4.9E-09 47.1 2.6 57 35-92 157-214 (321)
168 PLN02408 phospholipase A1 97.3 0.00064 1.4E-08 46.7 4.8 21 54-74 201-221 (365)
169 cd00312 Esterase_lipase Estera 97.2 0.00066 1.4E-08 47.8 4.7 42 49-90 172-215 (493)
170 PF09752 DUF2048: Uncharacteri 97.2 0.0017 3.6E-08 44.3 6.3 50 36-87 160-209 (348)
171 KOG3101|consensus 97.2 5.3E-05 1.2E-09 48.5 -1.1 42 49-90 137-178 (283)
172 PLN02934 triacylglycerol lipas 97.1 0.00098 2.1E-08 47.4 4.6 22 51-72 319-340 (515)
173 KOG2281|consensus 97.1 0.00098 2.1E-08 48.8 4.3 59 29-89 705-763 (867)
174 PF02089 Palm_thioest: Palmito 97.1 0.003 6.5E-08 42.0 6.3 36 53-88 80-116 (279)
175 PLN03037 lipase class 3 family 97.0 0.0013 2.8E-08 47.0 4.7 40 33-73 299-338 (525)
176 KOG2551|consensus 97.0 0.0024 5.3E-08 41.0 5.5 71 12-91 72-150 (230)
177 COG1770 PtrB Protease II [Amin 97.0 0.0013 2.7E-08 48.1 4.6 59 29-91 506-565 (682)
178 COG0429 Predicted hydrolase of 97.0 0.0021 4.6E-08 43.6 5.0 52 36-88 132-185 (345)
179 PLN02753 triacylglycerol lipas 97.0 0.0017 3.7E-08 46.4 4.7 22 52-73 311-332 (531)
180 PLN02802 triacylglycerol lipas 97.0 0.0017 3.8E-08 46.2 4.7 22 53-74 330-351 (509)
181 PLN02324 triacylglycerol lipas 97.0 0.0028 6E-08 44.2 5.6 21 53-73 215-235 (415)
182 KOG3975|consensus 96.9 0.006 1.3E-07 40.1 6.3 59 27-88 87-147 (301)
183 KOG2624|consensus 96.9 0.0012 2.6E-08 46.0 3.3 62 29-91 137-202 (403)
184 PLN02719 triacylglycerol lipas 96.8 0.0029 6.2E-08 45.2 4.6 21 53-73 298-318 (518)
185 PF05277 DUF726: Protein of un 96.7 0.012 2.6E-07 40.3 7.3 41 51-91 218-263 (345)
186 KOG4840|consensus 96.7 0.00075 1.6E-08 43.7 1.4 63 28-91 83-147 (299)
187 PF00450 Peptidase_S10: Serine 96.7 0.014 3.1E-07 40.0 7.5 63 28-90 109-183 (415)
188 PLN02847 triacylglycerol lipas 96.7 0.0067 1.5E-07 44.2 5.8 40 33-73 232-271 (633)
189 COG2936 Predicted acyl esteras 96.7 0.0036 7.8E-08 45.2 4.4 75 16-90 87-161 (563)
190 KOG2182|consensus 96.6 0.0037 8E-08 44.4 4.4 66 29-94 146-213 (514)
191 KOG4569|consensus 96.5 0.0055 1.2E-07 41.7 4.6 23 51-73 169-191 (336)
192 PLN02761 lipase class 3 family 96.5 0.0077 1.7E-07 43.2 5.3 21 53-73 294-314 (527)
193 COG4757 Predicted alpha/beta h 96.5 0.0042 9.2E-08 40.5 3.6 59 14-73 62-125 (281)
194 KOG3043|consensus 96.5 0.0012 2.7E-08 42.5 1.1 61 31-93 99-159 (242)
195 PF03583 LIP: Secretory lipase 96.3 0.014 3E-07 39.0 5.3 39 52-90 70-115 (290)
196 KOG3847|consensus 96.2 0.0024 5.2E-08 43.3 1.3 41 51-92 239-280 (399)
197 PF00135 COesterase: Carboxyle 96.1 0.017 3.7E-07 40.8 5.3 38 51-88 206-245 (535)
198 COG3150 Predicted esterase [Ge 96.1 0.017 3.6E-07 35.9 4.4 55 26-88 37-91 (191)
199 PF07519 Tannase: Tannase and 96.0 0.024 5.2E-07 40.4 5.6 40 51-90 113-152 (474)
200 COG2272 PnbA Carboxylesterase 96.0 0.012 2.7E-07 41.8 4.0 41 49-89 176-218 (491)
201 PF11144 DUF2920: Protein of u 95.9 0.068 1.5E-06 37.4 7.2 37 53-89 184-220 (403)
202 PF07082 DUF1350: Protein of u 95.7 0.084 1.8E-06 34.6 6.8 32 54-85 91-122 (250)
203 PF08237 PE-PPE: PE-PPE domain 95.7 0.056 1.2E-06 34.9 5.9 44 28-74 26-69 (225)
204 COG5153 CVT17 Putative lipase 95.7 0.029 6.4E-07 37.8 4.6 26 50-75 273-298 (425)
205 KOG4540|consensus 95.7 0.029 6.4E-07 37.8 4.6 26 50-75 273-298 (425)
206 KOG2237|consensus 95.5 0.02 4.3E-07 42.1 3.6 55 37-91 532-587 (712)
207 COG3946 VirJ Type IV secretory 95.4 0.026 5.6E-07 39.5 3.8 47 28-75 302-348 (456)
208 TIGR03712 acc_sec_asp2 accesso 95.3 0.039 8.5E-07 39.4 4.4 56 32-89 335-391 (511)
209 KOG2541|consensus 95.2 0.1 2.2E-06 34.8 6.0 36 52-87 91-127 (296)
210 KOG3967|consensus 95.1 0.12 2.6E-06 33.6 5.9 51 36-87 174-226 (297)
211 COG1505 Serine proteases of th 95.1 0.0036 7.8E-08 45.4 -1.1 61 31-91 477-538 (648)
212 KOG1283|consensus 94.8 0.083 1.8E-06 36.2 4.7 70 25-94 92-172 (414)
213 PF12146 Hydrolase_4: Putative 94.5 0.034 7.3E-07 30.0 2.0 29 15-43 49-79 (79)
214 PF04301 DUF452: Protein of un 94.4 0.16 3.5E-06 32.6 5.2 40 51-92 55-95 (213)
215 KOG2565|consensus 94.2 0.13 2.8E-06 35.9 4.8 65 16-85 195-261 (469)
216 PLN02213 sinapoylglucose-malat 94.2 0.23 4.9E-06 33.6 6.0 57 36-92 32-100 (319)
217 KOG2029|consensus 93.8 0.23 5E-06 36.6 5.5 50 37-86 509-570 (697)
218 KOG3253|consensus 93.5 0.063 1.4E-06 39.5 2.3 59 29-87 223-285 (784)
219 COG4188 Predicted dienelactone 93.4 0.13 2.7E-06 35.6 3.6 27 49-75 155-181 (365)
220 PF10081 Abhydrolase_9: Alpha/ 90.6 0.83 1.8E-05 30.7 4.8 39 51-89 107-148 (289)
221 PLN02209 serine carboxypeptida 90.6 2.4 5.2E-05 30.2 7.3 57 35-91 147-215 (437)
222 KOG2385|consensus 90.3 2 4.3E-05 31.5 6.7 42 51-92 445-491 (633)
223 PF05705 DUF829: Eukaryotic pr 90.3 1.7 3.7E-05 27.8 6.1 57 30-89 46-113 (240)
224 PLN03016 sinapoylglucose-malat 90.1 1.1 2.4E-05 31.8 5.4 56 36-91 146-213 (433)
225 KOG1516|consensus 89.7 1.1 2.3E-05 32.3 5.2 38 51-88 193-232 (545)
226 COG2939 Carboxypeptidase C (ca 89.2 0.41 8.9E-06 34.5 2.7 37 52-88 197-236 (498)
227 KOG1551|consensus 88.9 0.67 1.4E-05 31.2 3.3 34 51-84 193-226 (371)
228 PF09994 DUF2235: Uncharacteri 88.3 1.6 3.4E-05 29.0 4.9 24 51-74 90-113 (277)
229 cd07224 Pat_like Patatin-like 87.8 2.2 4.8E-05 27.6 5.3 37 39-75 15-51 (233)
230 KOG1202|consensus 87.6 2 4.4E-05 34.9 5.6 57 27-87 2160-2218(2376)
231 PF03283 PAE: Pectinacetyleste 86.7 1.9 4.2E-05 29.9 4.8 36 38-73 140-176 (361)
232 KOG1282|consensus 85.7 8.8 0.00019 27.6 7.6 63 29-93 146-218 (454)
233 PF02273 Acyl_transf_2: Acyl t 83.4 9.3 0.0002 25.6 6.4 61 26-90 76-136 (294)
234 cd07198 Patatin Patatin-like p 82.7 3.7 7.9E-05 25.0 4.3 24 52-75 25-48 (172)
235 cd07230 Pat_TGL4-5_like Triacy 81.8 2.4 5.2E-05 30.0 3.6 36 40-77 90-125 (421)
236 cd07225 Pat_PNPLA6_PNPLA7 Pata 80.9 3.8 8.3E-05 27.7 4.2 24 51-74 41-64 (306)
237 PF14253 AbiH: Bacteriophage a 80.8 2.1 4.6E-05 27.9 2.9 15 51-65 233-247 (270)
238 cd07218 Pat_iPLA2 Calcium-inde 80.2 7.1 0.00015 25.6 5.2 36 40-75 17-52 (245)
239 cd07204 Pat_PNPLA_like Patatin 80.0 7.1 0.00015 25.4 5.1 37 39-75 15-53 (243)
240 cd07207 Pat_ExoU_VipD_like Exo 79.9 4.6 9.9E-05 24.9 4.1 23 53-75 27-49 (194)
241 COG1752 RssA Predicted esteras 79.8 3.8 8.3E-05 27.5 3.9 25 51-75 37-61 (306)
242 PF09949 DUF2183: Uncharacteri 79.6 9 0.00019 21.6 5.4 44 35-83 52-97 (100)
243 cd07227 Pat_Fungal_NTE1 Fungal 79.0 4.8 0.0001 26.8 4.1 23 52-74 37-59 (269)
244 PRK10279 hypothetical protein; 78.6 4.6 9.9E-05 27.3 4.0 34 40-75 22-55 (300)
245 PF08484 Methyltransf_14: C-me 78.3 13 0.00028 22.8 6.4 33 51-83 67-99 (160)
246 cd07210 Pat_hypo_W_succinogene 77.5 6.5 0.00014 25.2 4.3 23 53-75 28-50 (221)
247 COG4553 DepA Poly-beta-hydroxy 76.7 18 0.00039 25.0 6.3 60 28-93 150-214 (415)
248 smart00827 PKS_AT Acyl transfe 76.6 4.8 0.0001 26.5 3.7 22 51-72 80-101 (298)
249 COG3673 Uncharacterized conser 76.4 8.4 0.00018 26.8 4.7 22 51-72 120-141 (423)
250 TIGR03131 malonate_mdcH malona 76.3 5.1 0.00011 26.5 3.7 22 51-72 74-95 (295)
251 KOG4372|consensus 75.7 1.1 2.3E-05 31.6 0.4 22 52-73 149-170 (405)
252 cd07208 Pat_hypo_Ecoli_yjju_li 75.5 8.5 0.00018 25.2 4.6 22 55-76 29-50 (266)
253 cd07212 Pat_PNPLA9 Patatin-lik 75.0 3.3 7.2E-05 28.1 2.6 20 56-75 35-54 (312)
254 COG2830 Uncharacterized protei 74.8 2.2 4.8E-05 26.7 1.6 39 52-92 56-95 (214)
255 cd01819 Patatin_and_cPLA2 Pata 73.2 11 0.00024 22.7 4.4 19 53-71 28-46 (155)
256 cd07209 Pat_hypo_Ecoli_Z1214_l 73.0 8.6 0.00019 24.4 4.0 23 53-75 26-48 (215)
257 PF00698 Acyl_transf_1: Acyl t 72.2 3.2 7E-05 27.9 2.0 22 51-72 82-103 (318)
258 PF00691 OmpA: OmpA family; I 72.1 11 0.00024 20.4 3.9 10 54-63 32-41 (97)
259 TIGR00128 fabD malonyl CoA-acy 70.8 7.7 0.00017 25.4 3.5 21 52-72 82-102 (290)
260 cd07228 Pat_NTE_like_bacteria 70.2 12 0.00027 22.8 4.2 23 53-75 28-50 (175)
261 PF11713 Peptidase_C80: Peptid 69.6 5.9 0.00013 24.2 2.6 50 16-65 60-116 (157)
262 cd07232 Pat_PLPL Patain-like p 68.4 7.3 0.00016 27.5 3.2 37 40-78 84-120 (407)
263 KOG2214|consensus 68.4 2.2 4.8E-05 31.0 0.6 41 40-82 191-231 (543)
264 cd07205 Pat_PNPLA6_PNPLA7_NTE1 68.2 15 0.00033 22.3 4.3 23 53-75 28-50 (175)
265 cd07229 Pat_TGL3_like Triacylg 67.8 8.5 0.00018 27.2 3.3 35 40-76 100-134 (391)
266 TIGR02802 Pal_lipo peptidoglyc 67.3 19 0.00041 19.9 4.3 8 54-61 33-40 (104)
267 COG2885 OmpA Outer membrane pr 67.1 24 0.00051 21.9 5.0 26 30-60 97-122 (190)
268 PRK13690 hypothetical protein; 66.8 20 0.00043 22.6 4.4 32 31-62 3-35 (184)
269 cd07220 Pat_PNPLA2 Patatin-lik 65.8 23 0.00051 23.3 5.0 21 55-75 38-58 (249)
270 COG3887 Predicted signaling pr 65.8 55 0.0012 24.8 7.1 49 33-85 321-375 (655)
271 COG0813 DeoD Purine-nucleoside 65.7 14 0.00031 24.2 3.8 45 50-94 53-99 (236)
272 cd07206 Pat_TGL3-4-5_SDP1 Tria 64.9 14 0.0003 25.2 3.8 34 40-75 86-119 (298)
273 cd07231 Pat_SDP1-like Sugar-De 63.4 10 0.00022 26.1 3.0 33 40-74 85-117 (323)
274 cd07217 Pat17_PNPLA8_PNPLA9_li 63.4 8.7 0.00019 26.5 2.7 18 56-73 44-61 (344)
275 PRK02399 hypothetical protein; 59.9 62 0.0013 23.2 6.6 53 31-84 76-128 (406)
276 KOG1374|consensus 59.8 50 0.0011 23.6 5.8 75 4-92 94-176 (448)
277 PF01734 Patatin: Patatin-like 59.2 13 0.00027 22.1 2.7 24 51-74 25-48 (204)
278 cd07213 Pat17_PNPLA8_PNPLA9_li 58.8 12 0.00025 25.0 2.7 20 56-75 37-56 (288)
279 cd07222 Pat_PNPLA4 Patatin-lik 58.8 33 0.00072 22.4 4.7 33 40-72 16-50 (246)
280 COG0331 FabD (acyl-carrier-pro 58.5 21 0.00046 24.3 3.9 22 51-72 83-104 (310)
281 cd07211 Pat_PNPLA8 Patatin-lik 58.0 9.9 0.00021 25.5 2.3 17 56-72 44-60 (308)
282 PRK10802 peptidoglycan-associa 57.5 33 0.00072 21.2 4.4 27 30-61 83-109 (173)
283 PF10605 3HBOH: 3HB-oligomer h 57.0 86 0.0019 23.9 7.2 39 54-92 286-325 (690)
284 PF06792 UPF0261: Uncharacteri 56.4 72 0.0016 22.8 6.6 55 29-84 72-126 (403)
285 PF11181 YflT: Heat induced st 56.1 31 0.00067 19.3 3.8 27 36-62 10-36 (103)
286 TIGR02816 pfaB_fam PfaB family 55.7 28 0.00061 25.7 4.3 25 50-74 262-286 (538)
287 cd01714 ETF_beta The electron 55.0 29 0.00063 21.9 3.9 50 28-83 90-144 (202)
288 PF10664 NdhM: Cyanobacterial 53.6 22 0.00047 20.3 2.8 38 26-63 63-102 (108)
289 PRK13938 phosphoheptose isomer 52.8 57 0.0012 20.6 5.1 25 51-75 44-68 (196)
290 TIGR03789 pdsO proteobacterial 51.6 44 0.00095 22.0 4.4 43 17-59 171-213 (239)
291 TIGR03127 RuMP_HxlB 6-phospho 51.5 50 0.0011 20.1 4.5 34 37-74 19-52 (179)
292 cd07221 Pat_PNPLA3 Patatin-lik 50.8 22 0.00049 23.4 3.0 21 55-75 34-54 (252)
293 cd05005 SIS_PHI Hexulose-6-pho 49.5 51 0.0011 20.1 4.3 34 37-74 22-55 (179)
294 PF05576 Peptidase_S37: PS-10 48.8 13 0.00028 26.7 1.7 71 16-88 95-169 (448)
295 PF00300 His_Phos_1: Histidine 48.4 31 0.00067 20.0 3.1 33 29-61 120-152 (158)
296 cd07216 Pat17_PNPLA8_PNPLA9_li 47.7 15 0.00033 24.7 1.9 17 56-72 45-61 (309)
297 PF01118 Semialdhyde_dh: Semia 47.5 40 0.00088 19.2 3.5 29 54-83 1-30 (121)
298 PRK10510 putative outer membra 46.7 78 0.0017 20.4 4.9 12 51-62 142-153 (219)
299 cd07199 Pat17_PNPLA8_PNPLA9_li 45.9 19 0.00042 23.4 2.1 18 56-73 37-54 (258)
300 PF04816 DUF633: Family of unk 45.7 27 0.00058 22.3 2.7 30 52-83 67-99 (205)
301 PRK01710 murD UDP-N-acetylmura 44.4 62 0.0014 23.0 4.6 33 37-74 4-36 (458)
302 cd07214 Pat17_isozyme_like Pat 43.3 20 0.00043 24.7 1.9 18 56-73 46-63 (349)
303 COG4667 Predicted esterase of 43.1 14 0.0003 25.0 1.1 25 56-80 43-67 (292)
304 PF03575 Peptidase_S51: Peptid 42.9 17 0.00037 21.7 1.4 14 55-68 70-83 (154)
305 PRK13936 phosphoheptose isomer 42.8 84 0.0018 19.7 5.6 25 51-75 42-66 (197)
306 PF01494 FAD_binding_3: FAD bi 42.7 32 0.0007 22.7 2.9 22 54-75 3-24 (356)
307 cd07215 Pat17_PNPLA8_PNPLA9_li 42.7 22 0.00048 24.2 2.1 17 56-72 43-59 (329)
308 PLN02752 [acyl-carrier protein 42.2 24 0.00052 24.1 2.2 18 55-72 126-143 (343)
309 PF10561 UPF0565: Uncharacteri 41.9 34 0.00074 23.4 2.8 24 51-74 191-214 (303)
310 TIGR03607 patatin-related prot 41.8 26 0.00057 26.9 2.5 19 54-72 67-85 (739)
311 cd07219 Pat_PNPLA1 Patatin-lik 41.8 93 0.002 22.1 4.9 19 55-73 46-64 (382)
312 PRK11557 putative DNA-binding 41.4 77 0.0017 20.8 4.4 25 51-75 127-151 (278)
313 PF15566 Imm18: Immunity prote 41.0 39 0.00085 16.8 2.3 15 51-65 19-33 (52)
314 cd00883 beta_CA_cladeA Carboni 40.8 43 0.00093 20.9 3.0 30 36-70 69-98 (182)
315 PRK14194 bifunctional 5,10-met 40.3 71 0.0015 21.9 4.1 36 38-74 146-183 (301)
316 PRK06193 hypothetical protein; 39.6 65 0.0014 20.7 3.7 31 30-63 136-166 (206)
317 PRK10886 DnaA initiator-associ 39.4 1E+02 0.0022 19.6 5.2 39 36-74 25-63 (196)
318 cd00382 beta_CA Carbonic anhyd 38.8 58 0.0013 18.7 3.2 27 36-67 47-73 (119)
319 cd02652 nuc_hydro_2 NH_2: A su 37.7 96 0.0021 21.1 4.5 35 52-88 108-153 (293)
320 KOG2960|consensus 37.6 63 0.0014 21.5 3.4 52 29-87 59-111 (328)
321 COG1737 RpiR Transcriptional r 37.4 1.1E+02 0.0023 20.4 4.6 25 51-75 129-153 (281)
322 PF04260 DUF436: Protein of un 37.3 66 0.0014 20.2 3.3 14 49-62 15-28 (172)
323 PRK05665 amidotransferase; Pro 36.9 67 0.0015 21.0 3.6 35 32-71 74-108 (240)
324 PLN03006 carbonate dehydratase 36.1 55 0.0012 22.4 3.1 30 36-70 160-189 (301)
325 PRK15416 lipopolysaccharide co 35.8 46 0.00099 21.3 2.6 19 51-69 150-168 (201)
326 PF10686 DUF2493: Protein of u 35.4 71 0.0015 16.7 4.3 23 53-75 33-57 (71)
327 KOG0256|consensus 35.2 95 0.0021 22.5 4.2 48 29-76 121-170 (471)
328 cd03379 beta_CA_cladeD Carboni 35.0 82 0.0018 18.7 3.5 24 36-64 44-67 (142)
329 PRK08457 motB flagellar motor 34.9 94 0.002 20.6 4.0 47 16-62 159-209 (257)
330 cd00884 beta_CA_cladeB Carboni 34.3 65 0.0014 20.3 3.1 31 36-71 75-105 (190)
331 PLN02347 GMP synthetase 33.6 1.7E+02 0.0038 21.7 5.5 42 51-92 227-271 (536)
332 PRK00414 gmhA phosphoheptose i 33.2 1.2E+02 0.0027 18.9 5.0 23 51-73 43-65 (192)
333 PRK02947 hypothetical protein; 33.0 1.4E+02 0.003 19.5 4.6 24 51-74 39-62 (246)
334 COG4475 Uncharacterized protei 32.6 1.2E+02 0.0027 18.8 3.9 28 35-62 5-33 (180)
335 TIGR01440 conserved hypothetic 32.6 81 0.0018 19.7 3.2 14 49-62 15-28 (172)
336 PF00091 Tubulin: Tubulin/FtsZ 32.4 1.3E+02 0.0029 19.0 5.7 53 34-87 106-166 (216)
337 PF12165 DUF3594: Domain of un 32.3 85 0.0018 18.8 3.1 17 49-65 33-49 (137)
338 PRK15482 transcriptional regul 32.0 1.5E+02 0.0033 19.5 4.7 24 51-74 134-157 (285)
339 COG4174 ABC-type uncharacteriz 31.9 58 0.0013 22.3 2.6 60 4-75 190-249 (364)
340 PF00732 GMC_oxred_N: GMC oxid 31.7 1.4E+02 0.003 19.5 4.5 35 54-89 2-36 (296)
341 PRK08644 thiamine biosynthesis 31.7 94 0.002 19.8 3.6 32 51-85 27-59 (212)
342 COG3621 Patatin [General funct 31.4 1.1E+02 0.0025 21.5 4.0 41 33-75 22-64 (394)
343 PLN00416 carbonate dehydratase 31.4 78 0.0017 21.1 3.2 29 37-70 129-157 (258)
344 PF10142 PhoPQ_related: PhoPQ- 31.2 1.9E+02 0.0042 20.4 6.3 36 49-85 168-203 (367)
345 KOG4388|consensus 31.1 1.7E+02 0.0036 22.6 5.0 42 48-89 464-509 (880)
346 PF14987 NADHdh_A3: NADH dehyd 31.1 96 0.0021 16.9 3.1 27 38-68 5-31 (84)
347 PRK04148 hypothetical protein; 30.9 99 0.0021 18.5 3.3 22 52-73 17-38 (134)
348 PF13289 SIR2_2: SIR2-like dom 29.6 1.1E+02 0.0025 17.3 4.3 15 51-65 85-99 (143)
349 PRK05441 murQ N-acetylmuramic 29.3 1.9E+02 0.004 19.6 5.8 23 51-73 61-83 (299)
350 PRK05282 (alpha)-aspartyl dipe 28.6 64 0.0014 21.1 2.4 19 54-72 113-131 (233)
351 PLN02994 1-aminocyclopropane-1 27.9 1.5E+02 0.0032 18.0 5.3 56 32-89 95-152 (153)
352 COG2384 Predicted SAM-dependen 27.8 80 0.0017 20.7 2.7 29 53-83 87-118 (226)
353 cd01820 PAF_acetylesterase_lik 27.5 1.3E+02 0.0028 18.8 3.6 31 29-62 12-42 (214)
354 PF07992 Pyr_redox_2: Pyridine 27.4 72 0.0016 19.3 2.5 22 54-75 1-22 (201)
355 PLN03019 carbonic anhydrase 27.3 95 0.0021 21.6 3.1 30 36-70 203-232 (330)
356 PF12242 Eno-Rase_NADH_b: NAD( 27.3 1.1E+02 0.0025 16.5 4.9 25 51-75 38-62 (78)
357 PRK10808 outer membrane protei 26.7 1.9E+02 0.0041 19.9 4.5 8 53-60 258-265 (351)
358 PRK11302 DNA-binding transcrip 26.7 1.9E+02 0.004 18.9 4.4 22 51-72 127-148 (284)
359 KOG4389|consensus 26.6 1.9E+02 0.004 21.8 4.5 41 49-89 214-256 (601)
360 PLN02154 carbonic anhydrase 26.4 1.3E+02 0.0028 20.6 3.6 29 37-70 155-183 (290)
361 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.4 1.4E+02 0.003 17.2 3.5 24 51-74 12-35 (153)
362 COG5418 Predicted secreted pro 26.3 1.7E+02 0.0036 18.1 4.6 33 28-60 72-105 (164)
363 PF00625 Guanylate_kin: Guanyl 26.2 1.2E+02 0.0026 18.4 3.3 37 53-89 3-41 (183)
364 cd02188 gamma_tubulin Gamma-tu 26.2 2.5E+02 0.0055 20.2 6.6 33 31-64 109-141 (431)
365 COG4425 Predicted membrane pro 26.1 62 0.0013 23.8 2.1 58 29-89 375-436 (588)
366 PRK10443 rihA ribonucleoside h 26.0 2.2E+02 0.0047 19.4 4.7 36 52-89 116-155 (311)
367 cd03146 GAT1_Peptidase_E Type 25.8 90 0.0019 19.8 2.7 18 53-70 113-130 (212)
368 cd03129 GAT1_Peptidase_E_like 25.7 1E+02 0.0022 19.4 2.9 18 53-70 113-130 (210)
369 cd02654 nuc_hydro_CjNH nuc_hyd 25.7 2.2E+02 0.0048 19.4 4.9 34 53-88 129-166 (318)
370 PLN03014 carbonic anhydrase 25.6 1E+02 0.0022 21.6 3.0 30 36-70 208-237 (347)
371 PRK05368 homoserine O-succinyl 25.0 1.1E+02 0.0024 21.0 3.1 32 37-73 123-154 (302)
372 KOG0440|consensus 24.9 1E+02 0.0023 20.4 2.8 34 7-45 119-152 (243)
373 PRK09065 glutamine amidotransf 24.6 1.3E+02 0.0028 19.5 3.3 33 34-71 73-105 (237)
374 cd05007 SIS_Etherase N-acetylm 24.6 2.1E+02 0.0047 18.8 5.8 25 51-75 48-72 (257)
375 PF05005 Ocnus: Janus/Ocnus fa 24.5 40 0.00087 19.4 0.9 14 51-64 74-87 (108)
376 PRK13937 phosphoheptose isomer 24.1 1.9E+02 0.0041 17.9 5.0 35 36-70 22-56 (188)
377 PTZ00313 inosine-adenosine-gua 23.9 2.5E+02 0.0053 19.3 5.9 36 53-90 130-170 (326)
378 PRK15219 carbonic anhydrase; P 23.9 1.2E+02 0.0027 20.0 3.1 30 36-70 131-160 (245)
379 TIGR01721 AMN-like AMP nucleos 23.9 1.9E+02 0.0042 19.4 4.0 43 52-94 59-103 (266)
380 cd06143 PAN2_exo DEDDh 3'-5' e 23.6 1.2E+02 0.0027 19.0 2.9 14 53-66 101-114 (174)
381 PRK12467 peptide synthase; Pro 23.6 4.8E+02 0.011 24.7 7.1 57 29-89 3737-3796(3956)
382 PRK09967 putative outer membra 23.6 1.8E+02 0.004 17.7 4.4 47 15-61 86-133 (160)
383 cd03145 GAT1_cyanophycinase Ty 23.5 92 0.002 19.9 2.4 19 53-71 116-134 (217)
384 TIGR03169 Nterm_to_SelD pyridi 23.5 1.6E+02 0.0036 19.9 3.8 32 54-85 1-32 (364)
385 KOG1578|consensus 23.3 56 0.0012 22.1 1.4 32 38-74 144-175 (276)
386 PHA00490 terminal protein 23.2 1.1E+02 0.0025 19.9 2.8 48 31-80 94-141 (266)
387 PRK10437 carbonic anhydrase; P 23.1 1.2E+02 0.0026 19.7 2.9 29 37-70 80-108 (220)
388 PRK06847 hypothetical protein; 22.8 1.2E+02 0.0027 20.5 3.1 24 52-75 4-27 (375)
389 COG3675 Predicted lipase [Lipi 22.5 70 0.0015 22.1 1.8 29 53-82 175-207 (332)
390 cd00286 Tubulin_FtsZ Tubulin/F 22.5 2.6E+02 0.0056 19.0 6.4 30 34-64 71-100 (328)
391 KOG2308|consensus 22.5 32 0.00068 26.5 0.2 22 53-74 417-438 (741)
392 PRK06475 salicylate hydroxylas 22.4 1.2E+02 0.0026 21.0 3.0 23 53-75 3-25 (400)
393 cd05015 SIS_PGI_1 Phosphogluco 22.1 1.9E+02 0.0042 17.3 3.7 27 35-64 4-30 (158)
394 COG0288 CynT Carbonic anhydras 22.0 1.1E+02 0.0023 19.7 2.5 34 33-71 77-110 (207)
395 PRK06490 glutamine amidotransf 21.9 1.3E+02 0.0028 19.6 2.9 33 34-71 71-103 (239)
396 PRK10768 ribonucleoside hydrol 21.8 2.6E+02 0.0057 18.8 4.7 34 53-88 116-153 (304)
397 PF00484 Pro_CA: Carbonic anhy 21.8 1.9E+02 0.004 17.1 4.0 20 51-70 53-72 (153)
398 KOG2248|consensus 21.5 1.4E+02 0.003 21.2 3.1 34 51-85 291-324 (380)
399 PF01380 SIS: SIS domain SIS d 21.4 1.6E+02 0.0036 16.3 3.1 24 51-74 4-27 (131)
400 cd01741 GATase1_1 Subgroup of 21.3 1.8E+02 0.004 17.7 3.4 33 34-71 66-98 (188)
401 PRK09038 flagellar motor prote 21.3 2.5E+02 0.0055 18.8 4.3 48 15-62 166-217 (281)
402 PRK13463 phosphatase PhoE; Pro 21.3 2.2E+02 0.0048 17.7 5.7 43 29-72 121-163 (203)
403 PF01156 IU_nuc_hydro: Inosine 21.2 1.7E+02 0.0036 19.6 3.4 50 34-91 106-159 (312)
404 PF04422 FrhB_FdhB_N: Coenzyme 21.2 1.5E+02 0.0033 15.8 2.7 27 60-86 17-44 (82)
405 TIGR02813 omega_3_PfaA polyket 20.8 1.3E+02 0.0029 27.0 3.3 21 51-71 672-692 (2582)
406 PF03385 DUF288: Protein of un 20.7 2.3E+02 0.005 20.2 4.0 28 61-91 218-245 (390)
407 COG0084 TatD Mg-dependent DNas 20.6 2.7E+02 0.0059 18.5 5.4 54 32-88 13-67 (256)
408 cd02189 delta_tubulin The tubu 20.5 3.4E+02 0.0074 19.6 5.5 33 32-65 106-138 (446)
409 TIGR02733 desat_CrtD C-3',4' d 20.5 1.4E+02 0.003 21.3 3.1 23 53-75 2-24 (492)
410 cd05013 SIS_RpiR RpiR-like pro 20.4 1.7E+02 0.0038 16.2 3.7 23 51-73 12-34 (139)
411 cd07185 OmpA_C-like Peptidogly 20.2 1.6E+02 0.0035 15.8 4.2 13 51-63 32-44 (106)
412 cd02650 nuc_hydro_CaPnhB NH_hy 20.0 2.9E+02 0.0062 18.6 5.1 37 52-90 114-154 (304)
No 1
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.66 E-value=6.2e-16 Score=97.99 Aligned_cols=91 Identities=53% Similarity=0.958 Sum_probs=70.0
Q ss_pred ccCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEE
Q psy11077 4 TLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVA 83 (97)
Q Consensus 4 ~~~~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~ 83 (97)
+...|..+++||+....+.....+...+++..+.+.++++.+.+.+++.++|+|+|+||||++++.++.++|+.+.++|+
T Consensus 56 ~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~ 135 (216)
T PF02230_consen 56 TVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVA 135 (216)
T ss_dssp GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEE
T ss_pred ccccccCCCceeeccCCCcchhhhHHHHHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEE
Confidence 34455556699999987766556788999999999999998877778889999999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q psy11077 84 LSCWLPMHKSF 94 (97)
Q Consensus 84 ~~~~~~~~~~~ 94 (97)
++++++.....
T Consensus 136 lsG~~~~~~~~ 146 (216)
T PF02230_consen 136 LSGYLPPESEL 146 (216)
T ss_dssp ES---TTGCCC
T ss_pred eeccccccccc
Confidence 99999876543
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.53 E-value=4e-14 Score=92.78 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=61.5
Q ss_pred ccccCCCCCCcc--------cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy11077 15 FDLISLDVNAKE--------DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86 (97)
Q Consensus 15 ~d~~g~~~~~~~--------~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~ 86 (97)
+|++|+|.|... ...+++++++++.++++.+ +.++++++||||||.+++.++.++|++|+++|++++
T Consensus 61 ~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~ 135 (294)
T PLN02824 61 IDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV-----VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINI 135 (294)
T ss_pred EcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHh-----cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECC
Confidence 699999988643 2478999999999999988 668999999999999999999999999999999997
Q ss_pred CC
Q psy11077 87 WL 88 (97)
Q Consensus 87 ~~ 88 (97)
..
T Consensus 136 ~~ 137 (294)
T PLN02824 136 SL 137 (294)
T ss_pred Cc
Confidence 54
No 3
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.53 E-value=1e-13 Score=91.94 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCCCCccccccCCCCCC---cccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 8 GYPMPSWFDLISLDVNA---KEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 8 ~~~~~~w~d~~g~~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
|+.-.. +|.+|+|.|. .....+++++.+++..+++.+... ....+++++||||||.|++.++.+++.+++++|+.
T Consensus 61 G~~V~~-~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~-~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLs 138 (298)
T COG2267 61 GFDVYA-LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP-DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLS 138 (298)
T ss_pred CCEEEE-ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc-CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEE
Confidence 344444 4999999883 456678999999999999998432 25679999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy11077 85 SCWLPMH 91 (97)
Q Consensus 85 ~~~~~~~ 91 (97)
+|++...
T Consensus 139 sP~~~l~ 145 (298)
T COG2267 139 SPALGLG 145 (298)
T ss_pred CccccCC
Confidence 9999876
No 4
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.50 E-value=6.9e-14 Score=91.03 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=61.5
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.|... ...+++.+.+++.++++.+ +.++++|+||||||.+++.++.++|++++++|++++...
T Consensus 57 ~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l-----~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 57 FDVPGVGGSSTPRHPYRFPGLAKLAARMLDYL-----DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred ECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh-----CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 499999988633 3467899999999999998 678899999999999999999999999999999997753
No 5
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.49 E-value=1.9e-13 Score=84.51 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=62.4
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+... ...++++.++++.++++++ ..++++++|||+||.+++.++.++|++|+++|+++|...
T Consensus 30 ~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 30 FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL-----GIKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT-----TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSS
T ss_pred EecCCccccccccccCCcchhhhhhhhhhccccc-----ccccccccccccccccccccccccccccccceeeccccc
Confidence 489999988643 3678999999999999987 668999999999999999999999999999999998874
No 6
>PLN02965 Probable pheophorbidase
Probab=99.48 E-value=1.2e-13 Score=89.08 Aligned_cols=68 Identities=12% Similarity=0.292 Sum_probs=59.5
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCC-CceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPS-DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~-~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+|++|+|.|... ...++++.++++.++++.+ +. ++++++||||||.++..++.++|++|+++|++++.
T Consensus 36 ~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l-----~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 36 VDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL-----PPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred ecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc-----CCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 499999988632 3467899999999999987 54 59999999999999999999999999999999875
No 7
>KOG4409|consensus
Probab=99.48 E-value=9.7e-14 Score=92.61 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=60.2
Q ss_pred ccccCCCCCCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-----DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-----~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|.|.|+.+ .+...+.+++-++++.... +.++++|+|||+||+++..|+.+||++|+.+|+++|+--
T Consensus 122 iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~-----~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf 196 (365)
T KOG4409|consen 122 IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKM-----GLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGF 196 (365)
T ss_pred ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHc-----CCcceeEeeccchHHHHHHHHHhChHhhceEEEeccccc
Confidence 599999988643 3455567777777777765 778999999999999999999999999999999999875
Q ss_pred CC
Q psy11077 90 MH 91 (97)
Q Consensus 90 ~~ 91 (97)
..
T Consensus 197 ~~ 198 (365)
T KOG4409|consen 197 PE 198 (365)
T ss_pred cc
Confidence 54
No 8
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.48 E-value=3.3e-13 Score=89.88 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHh-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~-~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
+|++|+|.|... ...+++..++++..+++.+... .....+++|+||||||.+++.++.++|++++++|+++|+....
T Consensus 93 ~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~ 172 (330)
T PLN02298 93 LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKIS 172 (330)
T ss_pred ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCC
Confidence 499999988532 2357888999999999988522 2334579999999999999999999999999999999976544
Q ss_pred C
Q psy11077 92 K 92 (97)
Q Consensus 92 ~ 92 (97)
+
T Consensus 173 ~ 173 (330)
T PLN02298 173 D 173 (330)
T ss_pred c
Confidence 3
No 9
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.47 E-value=2.1e-13 Score=87.28 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=60.2
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~ 86 (97)
+|.+|+|.+......++++.++++.++++.+ +.++++++||||||.+++.++.++|++|+++|++++
T Consensus 48 ~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l-----~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~ 114 (255)
T PRK10673 48 VDMRNHGLSPRDPVMNYPAMAQDLLDTLDAL-----QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114 (255)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-----CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEec
Confidence 4999999887666678999999999999987 667899999999999999999999999999999864
No 10
>KOG1455|consensus
Probab=99.47 E-value=2.1e-13 Score=89.58 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=70.9
Q ss_pred ccccCCCCCC--cccHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNA--KEDETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~--~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
+|+.|+|.|+ .....+++..++|+..+.+.+. +......+.+++||||||++++.++.++|+..+|+|+++|+..+.
T Consensus 88 ~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~ 167 (313)
T KOG1455|consen 88 IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKIS 167 (313)
T ss_pred eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccC
Confidence 5899999887 4467999999999999999866 445566689999999999999999999999999999999999998
Q ss_pred CCC
Q psy11077 92 KSF 94 (97)
Q Consensus 92 ~~~ 94 (97)
+.+
T Consensus 168 ~~~ 170 (313)
T KOG1455|consen 168 EDT 170 (313)
T ss_pred Ccc
Confidence 876
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=99.47 E-value=5.7e-13 Score=89.09 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=61.7
Q ss_pred ccccCCCCCCcc-------cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 15 FDLISLDVNAKE-------DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 15 ~d~~g~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+|++|+|.|... ...+++++++++..+++.+.. ..+..+++++||||||.+++.++.++|+.++++|+++|.
T Consensus 87 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~ 165 (330)
T PRK10749 87 IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQ-PGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPM 165 (330)
T ss_pred EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHh-cCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECch
Confidence 599999987532 124789999999999987632 225578999999999999999999999999999999987
Q ss_pred CCC
Q psy11077 88 LPM 90 (97)
Q Consensus 88 ~~~ 90 (97)
...
T Consensus 166 ~~~ 168 (330)
T PRK10749 166 FGI 168 (330)
T ss_pred hcc
Confidence 643
No 12
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.46 E-value=3.4e-13 Score=88.41 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=61.0
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.|+.. ...+++..++++..+++++ +.++++++||||||.+++.++.++|++++++|++++..
T Consensus 59 ~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~l-----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~ 128 (295)
T PRK03592 59 PDLIGMGASDKPDIDYTFADHARYLDAWFDAL-----GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIV 128 (295)
T ss_pred EcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCC
Confidence 489999988643 3468899999999999998 67899999999999999999999999999999999743
No 13
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.46 E-value=3.2e-13 Score=90.78 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=62.0
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHH-hCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVS-AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~-~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
+|++|+|.|... ...++++.++++.++++.+.. ......+++|+||||||.+++.++.++|++++++|+++|.....
T Consensus 121 ~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~ 200 (349)
T PLN02385 121 MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIA 200 (349)
T ss_pred ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccccc
Confidence 499999988632 335888899999999887731 12234579999999999999999999999999999999876543
No 14
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.46 E-value=5.8e-13 Score=84.72 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=60.0
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCc-ccEEEEeccCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK-LAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~-v~~~i~~~~~~ 88 (97)
+|++|+|.|......++++.++++.++++.+ +.++++++||||||.+++.++.++++. +++++++++..
T Consensus 33 ~D~~G~G~S~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 33 IDLPGHGGSAAISVDGFADVSRLLSQTLQSY-----NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred ecCCCCCCCCCccccCHHHHHHHHHHHHHHc-----CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 5899999887655568899999999999886 678999999999999999999999764 99999987654
No 15
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.45 E-value=4.9e-13 Score=88.06 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=61.0
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.|... ...++++.++++.++++++ +.++++|+||||||.++..++.++|++++++|++++..+
T Consensus 79 ~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l-----~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 151 (302)
T PRK00870 79 PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL-----DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLP 151 (302)
T ss_pred ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-----CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCC
Confidence 499999988643 2367899999999999987 678999999999999999999999999999999987544
No 16
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.45 E-value=7.2e-13 Score=82.96 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=60.1
Q ss_pred ccccCCCCCCc-----ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 15 FDLISLDVNAK-----EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 15 ~d~~g~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+|.+|.|.|+. ....+.++..+++..+++++ +.++++++||||||.+++.++.++|++|+++|++++.
T Consensus 6 ~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 6 FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL-----GIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH-----TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh-----CCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 47788877764 35688999999999999988 7778999999999999999999999999999999985
No 17
>KOG2112|consensus
Probab=99.40 E-value=2.8e-12 Score=80.33 Aligned_cols=89 Identities=64% Similarity=1.042 Sum_probs=83.1
Q ss_pred CccccCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccE
Q psy11077 1 MPVTLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAG 80 (97)
Q Consensus 1 ~~~~~~~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~ 80 (97)
||+++.+|..++.|||....+.+...+..++....+.+..+++.....+++.++|++.|+||||+++++.+..++..+.+
T Consensus 41 rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G 120 (206)
T KOG2112|consen 41 RPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGG 120 (206)
T ss_pred CcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccce
Confidence 68999999999999999998887766889999999999999999888888999999999999999999999999989999
Q ss_pred EEEeccCCC
Q psy11077 81 VVALSCWLP 89 (97)
Q Consensus 81 ~i~~~~~~~ 89 (97)
.+..+++.+
T Consensus 121 ~~~~s~~~p 129 (206)
T KOG2112|consen 121 IFALSGFLP 129 (206)
T ss_pred eeccccccc
Confidence 999999888
No 18
>PHA02857 monoglyceride lipase; Provisional
Probab=99.39 E-value=2.6e-12 Score=83.41 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=57.2
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.|... ...++..+++++.+.+..+. ......+++++||||||.+++.++.++|+.++++|+++|...
T Consensus 58 ~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~-~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 58 HDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIK-STYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred ccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHH-hhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 599999987532 23455666667666666542 223456899999999999999999999999999999999764
No 19
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.39 E-value=1.3e-12 Score=82.80 Aligned_cols=71 Identities=24% Similarity=0.413 Sum_probs=61.1
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
+|++|+|.+... ...+++++++++.++++.+ +.++++++||||||.+++.++.++|+.++++|+++++...
T Consensus 45 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~ 117 (257)
T TIGR03611 45 YDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL-----NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRP 117 (257)
T ss_pred EcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh-----CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCC
Confidence 489999887532 3468899999999999887 6788999999999999999999999999999999986543
No 20
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.37 E-value=1.4e-12 Score=87.57 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+.. ...+.++.++++.++++++ +.++ ++++||||||.+++.++.++|++|+++|++++..
T Consensus 105 ~Dl~G~g~s~~-~~~~~~~~a~dl~~ll~~l-----~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~ 173 (343)
T PRK08775 105 FDFIGADGSLD-VPIDTADQADAIALLLDAL-----GIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAH 173 (343)
T ss_pred EeCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-----CCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccc
Confidence 48888876643 3456788899999999987 6666 4799999999999999999999999999998754
No 21
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.37 E-value=1.8e-12 Score=84.11 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=55.2
Q ss_pred ccccCCCCCCccc--HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 15 FDLISLDVNAKED--ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 15 ~d~~g~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+|++|+|.|.... ........+++.++++.+ +.++++++||||||.+++.++.++|++++++|++++.
T Consensus 66 ~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l-----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 66 KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL-----DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred ECCCCCCCCCCCcCcccccchhHHHHHHHHHHc-----CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence 4889999886431 111224567788888887 7889999999999999999999999999999999875
No 22
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.36 E-value=3.8e-12 Score=83.30 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=61.9
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~~ 93 (97)
+|++|+|+|... ...+.+.+.+|+..+++.+.+. +..+++++||||||.+++.++.++|+.++++|+++|.......
T Consensus 62 ~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~--~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 62 IDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQ--GHPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred ECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhc--CCCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 499999988532 3346777888888887776432 4578999999999999999999999999999999998765443
No 23
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.36 E-value=3.5e-12 Score=82.11 Aligned_cols=69 Identities=23% Similarity=0.154 Sum_probs=59.2
Q ss_pred ccccCCCCCCccc--HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKED--ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+.... ..+++..++++.++++.+ +.++++|+||||||.+++.++.++|+++++++++++..
T Consensus 60 ~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~~-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 60 PDLPGHGFTRAPFRFRFTLPSMAEDLSALCAAE-----GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHc-----CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 4899999876332 468899999999999876 56789999999999999999999999999999998754
No 24
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.36 E-value=3.6e-12 Score=83.72 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=59.3
Q ss_pred ccccCCCCCCccc--HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKED--ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.|.... ..+++...+++.++++++ +.++++++||||||.+++.++.++|++++++|++++..
T Consensus 66 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 66 PDYLGFGLSERPSGFGYQIDEHARVIGEFVDHL-----GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred ECCCCCCCCCCCCccccCHHHHHHHHHHHHHHh-----CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 5899999876432 367888899999988887 67889999999999999999999999999999987654
No 25
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.35 E-value=4.7e-12 Score=85.70 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=59.1
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHH-hCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSAL-TYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~-~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.|... ...+++++++++.++++++ +.++++|+||||||.+++.++. ++|++|+++|++++..
T Consensus 120 ~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l~~l-----~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 120 IDLLGFGASDKPPGFSYTMETWAELILDFLEEV-----VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred ECCCCCCCCCCCCCccccHHHHHHHHHHHHHHh-----cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 499999988643 3468899999999999987 6789999999999999998887 4799999999999754
No 26
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.34 E-value=1.8e-12 Score=81.37 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=59.5
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+... ...+.++.++++.++++.+ +.++++++||||||.+++.++.++|+.++++|++++...
T Consensus 45 ~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~-----~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~ 115 (251)
T TIGR02427 45 YDKRGHGLSDAPEGPYSIEDLADDVLALLDHL-----GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAK 115 (251)
T ss_pred ecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccc
Confidence 488999887533 3468889999999999887 667899999999999999999999999999999986543
No 27
>PRK06489 hypothetical protein; Provisional
Probab=99.34 E-value=4.3e-12 Score=85.76 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=54.8
Q ss_pred ccccCCCCCCccc--------HHHHHHHHHHHHHHH-HHHHHhCCCCCce-EEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 15 FDLISLDVNAKED--------ETGIKRAAQKIHSII-DKEVSAGIPSDRI-VIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 15 ~d~~g~~~~~~~~--------~~~~~~~~~~l~~~i-~~~~~~~~~~~~i-~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
+|++|+|.|.... ..++++.++++..++ +++ +.+++ +++||||||.+++.++.++|++|+++|++
T Consensus 111 ~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~l-----gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi 185 (360)
T PRK06489 111 PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGL-----GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPM 185 (360)
T ss_pred eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhc-----CCCceeEEEEECHHHHHHHHHHHhCchhhheeeee
Confidence 3889999875432 357788888777754 555 66777 48999999999999999999999999999
Q ss_pred ccC
Q psy11077 85 SCW 87 (97)
Q Consensus 85 ~~~ 87 (97)
++.
T Consensus 186 ~s~ 188 (360)
T PRK06489 186 ASQ 188 (360)
T ss_pred ccC
Confidence 864
No 28
>PLN02578 hydrolase
Probab=99.34 E-value=6.6e-12 Score=84.72 Aligned_cols=69 Identities=26% Similarity=0.318 Sum_probs=59.4
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+... ...+.+.+.+++.++++.+ ..++++++||||||.+++.++.++|++++++|++++..
T Consensus 118 ~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~-----~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~ 187 (354)
T PLN02578 118 LDLLGFGWSDKALIEYDAMVWRDQVADFVKEV-----VKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAG 187 (354)
T ss_pred ECCCCCCCCCCcccccCHHHHHHHHHHHHHHh-----ccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCc
Confidence 489999988643 3467888889999999987 56789999999999999999999999999999997643
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.33 E-value=1.2e-11 Score=77.37 Aligned_cols=71 Identities=27% Similarity=0.469 Sum_probs=57.1
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHH-HHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQK-IHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~-l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
+|.+|+|.+... ...++++.+++ +..+++.+ +.++++++|||+||.+++.++.++|+.+++++++++....
T Consensus 33 ~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~ 107 (251)
T TIGR03695 33 IDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQL-----GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGL 107 (251)
T ss_pred EcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHc-----CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCc
Confidence 488888877542 35677777777 56666665 6789999999999999999999999999999999876543
No 30
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.33 E-value=8.7e-12 Score=79.93 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=58.3
Q ss_pred cccCCCCCCccc----HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 16 DLISLDVNAKED----ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
|++|+|.+.... ..+++..++++..+++.+ +.++++++||||||.+++.++.++|++++++|++++...
T Consensus 60 d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 60 DQLGCGYSDQPDDSDELWTIDYFVDELEEVREKL-----GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS 132 (288)
T ss_pred cCCCCCCCCCCCcccccccHHHHHHHHHHHHHHc-----CCCcEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence 888888875331 257888999998888876 667899999999999999999999999999999987653
No 31
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.32 E-value=6.9e-12 Score=87.76 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=58.0
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHH-HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIH-SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~-~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+... ...++++..+++. .+++.+ +.++++++||||||.+++.++.++|++++++|++++..
T Consensus 238 ~Dl~G~G~S~~p~~~~ytl~~~a~~l~~~ll~~l-----g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 238 VDLLGFGRSPKPADSLYTLREHLEMIERSVLERY-----KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred ECCCCCCCCcCCCCCcCCHHHHHHHHHHHHHHHc-----CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 589999988643 3467888888884 677766 67899999999999999999999999999999998643
No 32
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.30 E-value=1.1e-11 Score=81.15 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=57.8
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+... ...++++.++++.++++++ ...++++|+||||||.++..++.++|++++++|++++..+
T Consensus 51 ~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l----~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~ 123 (273)
T PLN02211 51 IDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL----PENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATML 123 (273)
T ss_pred ecccCCCCCCCCcccCCCHHHHHHHHHHHHHhc----CCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccC
Confidence 488888865322 2368888888888888876 1247899999999999999999999999999999987643
No 33
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.30 E-value=8.4e-12 Score=80.25 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=50.4
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+|++|+|.|......++++.++++. .+ ..++++++||||||.+++.++.++|++++++|++++.
T Consensus 45 ~Dl~G~G~S~~~~~~~~~~~~~~l~----~~-----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~ 108 (256)
T PRK10349 45 VDLPGFGRSRGFGALSLADMAEAVL----QQ-----APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASS 108 (256)
T ss_pred ecCCCCCCCCCCCCCCHHHHHHHHH----hc-----CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCc
Confidence 4899999886544445555544433 22 4578999999999999999999999999999999874
No 34
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.30 E-value=9.1e-12 Score=82.41 Aligned_cols=69 Identities=25% Similarity=0.247 Sum_probs=57.6
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+... ...+.++..+++..+++++ +.++++++||||||.+++.++.++|++++++|++++..
T Consensus 59 ~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l-----~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 59 FDQRGCGKSTPHACLEENTTWDLVADIEKLREKL-----GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-----CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 488999987633 2346777888888888776 66789999999999999999999999999999998754
No 35
>COG0400 Predicted esterase [General function prediction only]
Probab=99.29 E-value=2.6e-11 Score=76.77 Aligned_cols=84 Identities=33% Similarity=0.509 Sum_probs=63.0
Q ss_pred cccCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEE
Q psy11077 3 VTLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGV 81 (97)
Q Consensus 3 ~~~~~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~ 81 (97)
+..+++..++.|++...+ +..++......+.++++.+. +.+++.++++++|+|+||++++..+.++|+.++++
T Consensus 54 v~~~g~~~~f~~~~~~~~------d~edl~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~a 127 (207)
T COG0400 54 VAENGGPRFFRRYDEGSF------DQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGA 127 (207)
T ss_pred ccccCcccceeecCCCcc------chhhHHHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccc
Confidence 334455555555444422 24555555666666666555 66778899999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q psy11077 82 VALSCWLPMHK 92 (97)
Q Consensus 82 i~~~~~~~~~~ 92 (97)
|+++|+.+...
T Consensus 128 il~~g~~~~~~ 138 (207)
T COG0400 128 ILFSGMLPLEP 138 (207)
T ss_pred hhcCCcCCCCC
Confidence 99999998875
No 36
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.29 E-value=3.4e-11 Score=82.73 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=52.3
Q ss_pred ccccCCCCCCcccH-----H-HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAKEDE-----T-GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~~~~-----~-~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+..... . ..+..++++.++++.+ +.++++++||||||.+++.++.++|++++++|+++|..
T Consensus 137 ~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l-----~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~ 211 (402)
T PLN02894 137 IDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAK-----NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAG 211 (402)
T ss_pred ECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHc-----CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCcc
Confidence 38899988753321 1 1223455566666654 66799999999999999999999999999999998764
No 37
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.28 E-value=1.8e-11 Score=82.40 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~-i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..+++++++++.++++++ +.++ ++++||||||.+++.++.++|++++++|++++...
T Consensus 106 ~~~~~~~~~~~~~~~~~l-----~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 106 LITIRDDVKAQKLLLDHL-----GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSAR 163 (351)
T ss_pred CCcHHHHHHHHHHHHHHc-----CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCc
Confidence 367899999999999887 6677 99999999999999999999999999999997654
No 38
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.26 E-value=2.8e-11 Score=82.74 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=61.9
Q ss_pred ccccCCCCCCccc-----HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKED-----ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.|.... ..+++++++++.++++++ +.++++|+|||+||.+++.++.++|++++++|++++...
T Consensus 159 ~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-----~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 159 FDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-----KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred ECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHh-----CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCc
Confidence 5999999876432 368999999999999998 668999999999999999999999999999999998754
No 39
>PRK11460 putative hydrolase; Provisional
Probab=99.25 E-value=1.1e-10 Score=75.01 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 10 PMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 10 ~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
..+.||+..+... .....++....+.+.++++.+. +.+++.++++++||||||.+++.++.++|+.+.+++.+++.+
T Consensus 61 ~g~~W~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~ 138 (232)
T PRK11460 61 AGRQWFSVQGITE--DNRQARVAAIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY 138 (232)
T ss_pred CCcccccCCCCCc--cchHHHHHHHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc
Confidence 3578998765432 2233455666666767666654 445667799999999999999999999998889899888775
Q ss_pred C
Q psy11077 89 P 89 (97)
Q Consensus 89 ~ 89 (97)
+
T Consensus 139 ~ 139 (232)
T PRK11460 139 A 139 (232)
T ss_pred c
Confidence 4
No 40
>KOG4178|consensus
Probab=99.24 E-value=3.7e-11 Score=79.77 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=63.5
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
.|++|+|.|+.. +.+++...+.++..+++++ +.++++++||+||+.+++.++..+|++++++++++....
T Consensus 77 ~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~L-----g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 77 PDLRGYGFSDAPPHISEYTIDELVGDIVALLDHL-----GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred cCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHh-----ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 389999988643 5699999999999999999 789999999999999999999999999999999997665
No 41
>PRK07581 hypothetical protein; Validated
Probab=99.24 E-value=1.1e-11 Score=82.86 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=50.9
Q ss_pred ccccCCCCCCccc----HHHHHH-----HHHHHHH----HHHHHHHhCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccE
Q psy11077 15 FDLISLDVNAKED----ETGIKR-----AAQKIHS----IIDKEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAG 80 (97)
Q Consensus 15 ~d~~g~~~~~~~~----~~~~~~-----~~~~l~~----~i~~~~~~~~~~~~-i~l~G~S~Gg~ia~~~~~~~~~~v~~ 80 (97)
+|++|+|.|.... ..+++. ..+++.. +++++ +.++ .+|+||||||.+++.++.++|++|++
T Consensus 77 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~ 151 (339)
T PRK07581 77 PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF-----GIERLALVVGWSMGAQQTYHWAVRYPDMVER 151 (339)
T ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh-----CCCceEEEEEeCHHHHHHHHHHHHCHHHHhh
Confidence 3889998875321 223222 3444444 44455 6788 58999999999999999999999999
Q ss_pred EEEeccCCC
Q psy11077 81 VVALSCWLP 89 (97)
Q Consensus 81 ~i~~~~~~~ 89 (97)
+|++++...
T Consensus 152 Lvli~~~~~ 160 (339)
T PRK07581 152 AAPIAGTAK 160 (339)
T ss_pred heeeecCCC
Confidence 999976543
No 42
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.21 E-value=1.8e-10 Score=75.41 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=58.1
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
+|++|+|.|... ..+.+.+.+++.++++.+.+...+.++++++||||||.+++.++.. ++.++++|+++|+....
T Consensus 63 ~Dl~G~G~S~~~-~~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~ 137 (274)
T TIGR03100 63 FDYRGMGDSEGE-NLGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTE 137 (274)
T ss_pred eCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCc
Confidence 488999987533 2466778888888888875332245789999999999999999765 45899999999986543
No 43
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.19 E-value=4.7e-11 Score=74.83 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=50.5
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+......++++.++++.+ . ..++++++||||||.+++.++.++|++++++|++++...
T Consensus 36 ~d~~G~G~s~~~~~~~~~~~~~~~~~----~-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~ 101 (245)
T TIGR01738 36 VDLPGHGRSRGFGPLSLADAAEAIAA----Q-----APDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPC 101 (245)
T ss_pred ecCCcCccCCCCCCcCHHHHHHHHHH----h-----CCCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcc
Confidence 48999998765444455555544432 2 236899999999999999999999999999999987543
No 44
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.19 E-value=1e-10 Score=78.51 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=57.3
Q ss_pred ccccCCCCCCc-----ccHHHHHHHHHHHHHHHHHHHHh------------------CCC-CCceEEEEeChhHHHHHHH
Q psy11077 15 FDLISLDVNAK-----EDETGIKRAAQKIHSIIDKEVSA------------------GIP-SDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 15 ~d~~g~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~------------------~~~-~~~i~l~G~S~Gg~ia~~~ 70 (97)
+|++|+|.+.. ....++++.++|+..+++.+.+. ... ..+++++||||||.+++.+
T Consensus 80 ~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~ 159 (332)
T TIGR01607 80 LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRL 159 (332)
T ss_pred ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHH
Confidence 48999997752 22358899999999999876321 112 4579999999999999999
Q ss_pred HHhCCC--------cccEEEEeccCCCC
Q psy11077 71 ALTYPK--------KLAGVVALSCWLPM 90 (97)
Q Consensus 71 ~~~~~~--------~v~~~i~~~~~~~~ 90 (97)
+.++++ .++++|+.+|++.+
T Consensus 160 ~~~~~~~~~~~~~~~i~g~i~~s~~~~i 187 (332)
T TIGR01607 160 LELLGKSNENNDKLNIKGCISLSGMISI 187 (332)
T ss_pred HHHhccccccccccccceEEEeccceEE
Confidence 876542 58999999988643
No 45
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.16 E-value=1.4e-10 Score=77.91 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=58.6
Q ss_pred ccccCCCCCC-cccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNA-KEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~-~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|+|.+. .....++++.++++.++++.+ +..+++++|||+||.+++.++.++|++++++|++++..
T Consensus 163 ~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 163 LDLPGHGASSKAVGAGSLDELAAAVLAFLDAL-----GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred EcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-----CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 4888998874 334567888888888888876 66789999999999999999999999999999998764
No 46
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.16 E-value=3.4e-10 Score=77.78 Aligned_cols=75 Identities=27% Similarity=0.319 Sum_probs=58.5
Q ss_pred ccccCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+... ...+++.+.+++..+++.+... .+..+++++||||||.+++.++. +| +.++++|+.+|+..
T Consensus 169 ~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~-~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~ 246 (395)
T PLN02652 169 MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSE-NPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALR 246 (395)
T ss_pred eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccc
Confidence 599999987643 3457888899999999987422 23458999999999999998764 55 47999999999875
Q ss_pred CC
Q psy11077 90 MH 91 (97)
Q Consensus 90 ~~ 91 (97)
..
T Consensus 247 ~~ 248 (395)
T PLN02652 247 VK 248 (395)
T ss_pred cc
Confidence 44
No 47
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.13 E-value=3.4e-10 Score=77.14 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~-i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..+++++++++.++++++ +.++ .+++||||||.+++.++.++|++++++|++++...
T Consensus 126 ~~~~~~~~~~~~~~l~~l-----~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 126 VITIRDWVRAQARLLDAL-----GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred cCCHHHHHHHHHHHHHHh-----CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 468999999999999998 6777 59999999999999999999999999999987654
No 48
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.08 E-value=1.8e-09 Score=75.01 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=57.1
Q ss_pred cccCCCCCCcc-cHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 16 DLISLDVNAKE-DETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 16 d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
|.+|++.+... .........+++.++++.+. ..+.+.++++|+||||||.+|..++.++|+++.+++++.|..|.-+
T Consensus 80 Dw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F~ 158 (442)
T TIGR03230 80 DWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFE 158 (442)
T ss_pred ECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCccc
Confidence 55666654322 12233556667778887765 3345678999999999999999999999999999999998776543
No 49
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.06 E-value=7.4e-10 Score=86.54 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=58.1
Q ss_pred ccccCCCCCCcc---------cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 15 FDLISLDVNAKE---------DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 15 ~d~~g~~~~~~~---------~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
+|++|+|.+... ...+++..++++..+++++ +.++++|+||||||.+++.++.++|++++++|+++
T Consensus 1403 ~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l-----~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis 1477 (1655)
T PLN02980 1403 IDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI-----TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIIS 1477 (1655)
T ss_pred EcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh-----CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEEC
Confidence 589999877532 1356888888888888887 67899999999999999999999999999999998
Q ss_pred cCC
Q psy11077 86 CWL 88 (97)
Q Consensus 86 ~~~ 88 (97)
+..
T Consensus 1478 ~~p 1480 (1655)
T PLN02980 1478 GSP 1480 (1655)
T ss_pred CCC
Confidence 653
No 50
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.03 E-value=1.9e-09 Score=70.92 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~-~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
.......+++.++++.+.+. +.+.++++++||||||.++..++.++++++++++++.|..+...
T Consensus 87 ~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~f~ 151 (275)
T cd00707 87 NNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPLFS 151 (275)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCccccc
Confidence 34555667778888877532 45667999999999999999999999999999999988776543
No 51
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=74.15 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceE-EEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIV-IGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~-l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
..++++.++++.++++++ +.+++. ++||||||.+++.++.++|++++++|++++....
T Consensus 140 ~~t~~d~~~~~~~ll~~l-----gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~ 198 (389)
T PRK06765 140 VVTILDFVRVQKELIKSL-----GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQN 198 (389)
T ss_pred cCcHHHHHHHHHHHHHHc-----CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCC
Confidence 478999999999999887 778885 9999999999999999999999999999876543
No 52
>KOG1552|consensus
Probab=99.01 E-value=7.9e-10 Score=71.45 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=58.5
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
||++|+|.+... .+. ...+|++.+.+.+. ..+ +.++|+|+|+|+|+..++.++.+.| +.++|+.+|+.+...
T Consensus 94 ~DYSGyG~S~G~psE~---n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~r 167 (258)
T KOG1552|consen 94 YDYSGYGRSSGKPSER---NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMR 167 (258)
T ss_pred EecccccccCCCcccc---cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhh
Confidence 699999988633 333 56667777777775 333 6789999999999999999999999 999999999987654
Q ss_pred C
Q psy11077 93 S 93 (97)
Q Consensus 93 ~ 93 (97)
.
T Consensus 168 v 168 (258)
T KOG1552|consen 168 V 168 (258)
T ss_pred h
Confidence 3
No 53
>PLN02511 hydrolase
Probab=99.00 E-value=1.1e-09 Score=75.09 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=54.6
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCc--ccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK--LAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~--v~~~i~~~~~~~ 89 (97)
+|++|+|.+... .........+|+.++++.+.. .....+++++||||||.+++.++.++++. +.+++++++...
T Consensus 135 ~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~-~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~ 211 (388)
T PLN02511 135 FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAG-RYPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFD 211 (388)
T ss_pred EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHH-HCCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcC
Confidence 388898877532 112234567788888888742 23456899999999999999999999976 888888876543
No 54
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.00 E-value=2.2e-09 Score=72.42 Aligned_cols=73 Identities=22% Similarity=0.259 Sum_probs=52.7
Q ss_pred cccCCCCCCcccHHHHHHHHH-HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQ-KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
|.+|++.+. ...+++++.. ++.++++.+.+. .+.++++++||||||.+++.++.++|++++++|++++...+.
T Consensus 101 D~~g~g~s~--~~~~~~d~~~~~~~~~v~~l~~~-~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 101 DWGYPDRAD--RYLTLDDYINGYIDKCVDYICRT-SKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred eCCCCCHHH--hcCCHHHHHHHHHHHHHHHHHHH-hCCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 444444332 1235556554 366666665422 266799999999999999999999999999999999887654
No 55
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.99 E-value=2.9e-09 Score=73.56 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=51.1
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|++|+|.+... ...+...... .+++.+. ...++.+++.++||||||.+++.++..+|++++++|+++|...
T Consensus 228 ~D~pG~G~s~~~~~~~d~~~~~~---avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 228 IDMPSVGFSSKWKLTQDSSLLHQ---AVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred ECCCCCCCCCCCCccccHHHHHH---HHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 588998877432 1122222223 3344433 2234778999999999999999999999999999999998763
No 56
>KOG2564|consensus
Probab=98.99 E-value=1e-09 Score=71.94 Aligned_cols=68 Identities=26% Similarity=0.474 Sum_probs=53.2
Q ss_pred ccccCCCCCC--cccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEec
Q psy11077 15 FDLISLDVNA--KEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALS 85 (97)
Q Consensus 15 ~d~~g~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~--~~~~v~~~i~~~ 85 (97)
+|++|||++. +++.-+.+...+|+-.+++.+... ..++|+|+||||||+|+.+.+.. .|. +.|++.+.
T Consensus 108 ~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge--~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 108 LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE--LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc--CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 5999999986 445678888999999999988422 45689999999999999887764 343 77776653
No 57
>PRK13604 luxD acyl transferase; Provisional
Probab=98.97 E-value=1.5e-09 Score=72.24 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=52.7
Q ss_pred ccccCC-CCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISL-DVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~-~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
||++|+ |.|... ...+.....+|+..+++.+.+. +.+++.|+||||||.+++..+... .++++|+.+|+..+.
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~--~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTR--GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 588876 776432 2233344567888888877543 457899999999999986666533 499999999998844
No 58
>KOG1454|consensus
Probab=98.95 E-value=3.2e-09 Score=71.36 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred ccccCCCC-C--CcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEE---EeccCC
Q psy11077 15 FDLISLDV-N--AKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV---ALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~-~--~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i---~~~~~~ 88 (97)
+|+.|+|. + +....++....++.+..+.... ..++++++|||+||.+++.+|..+|+.|++++ ++++..
T Consensus 92 iDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~-----~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~ 166 (326)
T KOG1454|consen 92 IDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEV-----FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPV 166 (326)
T ss_pred EecCCCCcCCCCCCCCceehhHHHHHHHHHHHhh-----cCcceEEEEeCcHHHHHHHHHHhCcccccceeeeccccccc
Confidence 47888763 2 2445588889999999888886 56679999999999999999999999999999 555544
Q ss_pred CCC
Q psy11077 89 PMH 91 (97)
Q Consensus 89 ~~~ 91 (97)
...
T Consensus 167 ~~~ 169 (326)
T KOG1454|consen 167 YST 169 (326)
T ss_pred ccC
Confidence 433
No 59
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.93 E-value=4.7e-09 Score=66.11 Aligned_cols=62 Identities=27% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q psy11077 32 KRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~~ 93 (97)
...++|+.+.++.+. +..++.++|.++|||+||.+++.++.++|+++++++..+|.......
T Consensus 42 ~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a~v~~~g~~d~~~~ 104 (213)
T PF00326_consen 42 QADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKAAVAGAGVSDLFSY 104 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSEEEEESE-SSTTCS
T ss_pred ccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeeeeeccceecchhcc
Confidence 345666777777776 33457889999999999999999999999999999999998877654
No 60
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.90 E-value=1e-08 Score=63.72 Aligned_cols=69 Identities=26% Similarity=0.360 Sum_probs=54.4
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+|.+|+|.+... .......++++..+++.+ +..+++++||||||.+++.++.++|+.+++++++++...
T Consensus 56 ~d~~g~g~s~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 56 PDLRGHGRSDPA-GYSLSAYADDLAALLDAL-----GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred ecccCCCCCCcc-cccHHHHHHHHHHHHHHh-----CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 488888887511 123333478888888876 556699999999999999999999999999999997654
No 61
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.90 E-value=7.8e-09 Score=65.31 Aligned_cols=53 Identities=26% Similarity=0.430 Sum_probs=41.6
Q ss_pred HHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 37 KIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 37 ~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
++.++++.+. +..++.++++|+||||||.+++.++.++|+.+.+++.+++...
T Consensus 78 ~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 78 SLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred HHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 3444444443 3345778999999999999999999999999999999887653
No 62
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.88 E-value=2.4e-08 Score=65.48 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEeccCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLPMH 91 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~~~---~~v~~~i~~~~~~~~~ 91 (97)
...++++.++.-.++++++..... ...+++|+|||.|+.|++..+.+++ .+|.+++++-|.....
T Consensus 57 ~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~i 125 (266)
T PF10230_consen 57 RLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDI 125 (266)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccc
Confidence 568999999999999998864322 4578999999999999999999999 6899999988876544
No 63
>PRK10985 putative hydrolase; Provisional
Probab=98.87 E-value=7.3e-09 Score=69.26 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=48.3
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCc--ccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK--LAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~--v~~~i~~~~~~~ 89 (97)
+|++|++.+... .........+|+..+++.+.+. .+..+++++||||||.+++.++.++++. ++++|++++.+.
T Consensus 93 ~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 93 MHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQRE-FGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred EeCCCCCCCccCCcceECCCchHHHHHHHHHHHHh-CCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 477888755321 1110111345666666655322 2556899999999999988888887543 899999987654
No 64
>PRK10566 esterase; Provisional
Probab=98.83 E-value=3e-08 Score=63.51 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 33 RAAQKIHSIIDKEVSAG-IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~-~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
...+++..+++.+.+.. ++.++++++||||||.+++.++.++|+....++++
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~ 138 (249)
T PRK10566 86 QNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLM 138 (249)
T ss_pred HHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEee
Confidence 34556666666665333 46789999999999999999999988644444443
No 65
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.83 E-value=2.7e-08 Score=69.32 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=50.3
Q ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEeccCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWL 88 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~----~v~~~i~~~~~~ 88 (97)
|++|.+.+.+.. ...++..+++.++++...+. .+..+++|+||||||.++..++.++|+ .|+++|.+++.+
T Consensus 127 dL~g~gYDwR~~-~~~~~~~~~Lk~lIe~~~~~-~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 127 TLFGFGYDFRQS-NRLPETMDGLKKKLETVYKA-SGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred CcccCCCCcccc-ccHHHHHHHHHHHHHHHHHH-cCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCC
Confidence 566665543321 23455666777777766432 256789999999999999999998885 478889988654
No 66
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.79 E-value=5e-08 Score=57.42 Aligned_cols=36 Identities=39% Similarity=0.507 Sum_probs=33.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
+.++++++|||+||.+++.++.++ .+++++|+++++
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~ 94 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPY 94 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESES
T ss_pred CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCc
Confidence 778999999999999999999999 689999999995
No 67
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.79 E-value=1.3e-08 Score=72.46 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=60.0
Q ss_pred ccccCCCCCCccc-HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNAKED-ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
+|++|++.|.... ..+ ....+|+.++++.+.++.....++.++|||+||.+++.++.++|+.+++++..++.....
T Consensus 59 ~D~RG~g~S~g~~~~~~-~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 59 QDTRGRGASEGEFDLLG-SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred EeccccccCCCceEecC-cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 3888888875332 122 567888889998886554555799999999999999999999999999999988876544
No 68
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.77 E-value=4.6e-08 Score=64.13 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
...+++..++++. .+++.++++++||||||.+++.++.++|+.++++++++|....
T Consensus 120 ~~~~~l~~~~~~~--~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 175 (275)
T TIGR02821 120 YIVQELPALVAAQ--FPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAP 175 (275)
T ss_pred HHHHHHHHHHHhh--CCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCc
Confidence 3445565555542 2346779999999999999999999999999999999988653
No 69
>PRK11071 esterase YqiA; Provisional
Probab=98.74 E-value=6.6e-08 Score=60.45 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
++..+.+.++++.+ +.++++++||||||.+++.++.++|. .+|+++|...
T Consensus 45 ~~~~~~l~~l~~~~-----~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~ 94 (190)
T PRK11071 45 ADAAELLESLVLEH-----GGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVR 94 (190)
T ss_pred HHHHHHHHHHHHHc-----CCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence 34566666777665 66799999999999999999999983 4678887655
No 70
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.73 E-value=3.4e-08 Score=60.96 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH-HhCCCcccEEEEeccCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA-LTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~-~~~~~~v~~~i~~~~~~~ 89 (97)
+.++.+.+...+.+.+..+ .++++|+|||.|+..++.++ .+.+.+|+|+++++|+.+
T Consensus 35 ~~P~~~~W~~~l~~~i~~~------~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 35 DNPDLDEWVQALDQAIDAI------DEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp TS--HHHHHHHHHHCCHC-------TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred CCCCHHHHHHHHHHHHhhc------CCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 3466777777777766653 35699999999999999999 777889999999999986
No 71
>PLN02442 S-formylglutathione hydrolase
Probab=98.71 E-value=8e-08 Score=63.36 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
..+++.+.++.... ..+.++++++||||||.+++.++.++|+.+++++..+|....
T Consensus 125 ~~~~l~~~i~~~~~-~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 180 (283)
T PLN02442 125 VVKELPKLLSDNFD-QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANP 180 (283)
T ss_pred HHHHHHHHHHHHHH-hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCc
Confidence 44455555554321 137788999999999999999999999999999999998653
No 72
>PRK05855 short chain dehydrogenase; Validated
Probab=98.69 E-value=5.1e-08 Score=68.90 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=49.7
Q ss_pred ccccCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEeChhHHHHHHHHHhC--CCcccEEEEec
Q psy11077 15 FDLISLDVNAKE---DETGIKRAAQKIHSIIDKEVSAGIPSD-RIVIGGFSQGGALALYSALTY--PKKLAGVVALS 85 (97)
Q Consensus 15 ~d~~g~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~-~i~l~G~S~Gg~ia~~~~~~~--~~~v~~~i~~~ 85 (97)
+|++|+|.|... ...++++.++++..+++.+ +.. +++|+||||||.+++.++.+. +..+..++.++
T Consensus 57 ~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l-----~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~ 128 (582)
T PRK05855 57 YDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAV-----SPDRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVS 128 (582)
T ss_pred ecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHh-----CCCCcEEEEecChHHHHHHHHHhCccchhhhhhheecc
Confidence 599999988632 2467999999999999987 444 499999999999998887763 33444444443
No 73
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=60.51 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=56.6
Q ss_pred cccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 16 DLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 16 d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
.++|||..... -.++.++|.+++.+..+.+.+. ..+.|.++|.||||.+++.++.++| +++++.+++.....
T Consensus 49 ~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~--gy~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k 121 (243)
T COG1647 49 RYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEA--GYDEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVK 121 (243)
T ss_pred CCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHc--CCCeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccc
Confidence 56777765422 3467777877777777777444 5689999999999999999999999 99999999877644
No 74
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.68 E-value=1.6e-07 Score=60.30 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHH----HhCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEeccCCC
Q psy11077 30 GIKRAAQKIHSIIDKEV----SAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 89 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~----~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---~~v~~~i~~~~~~~ 89 (97)
.+.+..+.+.+.++.+. ......++++|+||||||.++..++...+ +.++.+|.++....
T Consensus 58 ~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 58 TLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 34444455555555543 22346789999999999999998887654 47999999985543
No 75
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.64 E-value=1.1e-07 Score=61.09 Aligned_cols=57 Identities=32% Similarity=0.370 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
+.+.++|..++++-. ++..++..|+|+||||..|+.++.++|+.+.+++++||.+..
T Consensus 96 ~~l~~el~p~i~~~~--~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~ 152 (251)
T PF00756_consen 96 TFLTEELIPYIEANY--RTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP 152 (251)
T ss_dssp HHHHTHHHHHHHHHS--SEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred eehhccchhHHHHhc--ccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence 445567777777642 222233899999999999999999999999999999987544
No 76
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.60 E-value=2.1e-07 Score=59.59 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=41.5
Q ss_pred HHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 38 IHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 38 l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+..+++.+. +..+|.++|++.|+|.||.++..++..+|+.|.++..+++..
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 334444433 446799999999999999999999999999999999887654
No 77
>KOG2382|consensus
Probab=98.58 E-value=1.6e-07 Score=62.64 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=57.9
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhH-HHHHHHHHhCCCcccEEEEec
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGG-ALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg-~ia~~~~~~~~~~v~~~i~~~ 85 (97)
.|.+.||.+..-...+-+..++++..|++..... ....++.++|||||| .+++..+...|+.+..+|+..
T Consensus 86 vd~RnHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~~-~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D 156 (315)
T KOG2382|consen 86 VDVRNHGSSPKITVHNYEAMAEDVKLFIDGVGGS-TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVED 156 (315)
T ss_pred EecccCCCCccccccCHHHHHHHHHHHHHHcccc-cccCCceecccCcchHHHHHHHHHhcCcccceeEEEe
Confidence 4888899988777778899999999999986211 135689999999999 888888889999999999874
No 78
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.58 E-value=2.8e-07 Score=63.81 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+...+++..++++......+.++.+|+|+||||..++.++.++|+.+.+++.+||.+
T Consensus 267 ~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 267 LAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 334566777776643223366789999999999999999999999999999999876
No 79
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.54 E-value=7.7e-07 Score=58.15 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEeccCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~-----~v~~~i~~~~~~~~~ 91 (97)
.+....+..+..++..| ...+..+++.++||||||..++.|+..+.. .+.++|.+++.+.-.
T Consensus 80 ~~~~~qa~wl~~vl~~L-~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 80 ANYKKQAKWLKKVLKYL-KKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred CCHHHHHHHHHHHHHHH-HHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 47788888899988888 555678999999999999999999998632 589999998776544
No 80
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.52 E-value=7.7e-07 Score=63.42 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=46.8
Q ss_pred cccCCCCCCcccHHHHHHHHH-HHHHHHHHHHHhCCCCCceEEEEeChhHHHHH----HHHHhC-CCcccEEEEeccCCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQ-KIHSIIDKEVSAGIPSDRIVIGGFSQGGALAL----YSALTY-PKKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~----~~~~~~-~~~v~~~i~~~~~~~ 89 (97)
|.+|++.+... .++++++. .+.+.++.+.+. .+.++++++||||||.++. .++..+ ++++++++++++..+
T Consensus 227 Dwrgpg~s~~~--~~~ddY~~~~i~~al~~v~~~-~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 227 SWRNPDASQAD--KTFDDYIRDGVIAALEVVEAI-TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLD 303 (532)
T ss_pred ECCCCCccccc--CChhhhHHHHHHHHHHHHHHh-cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcC
Confidence 44555554321 12334443 344555544311 2778999999999999852 345554 778999999998887
Q ss_pred CCC
Q psy11077 90 MHK 92 (97)
Q Consensus 90 ~~~ 92 (97)
+.+
T Consensus 304 f~~ 306 (532)
T TIGR01838 304 FSD 306 (532)
T ss_pred CCC
Confidence 664
No 81
>PLN00021 chlorophyllase
Probab=98.48 E-value=7.9e-07 Score=59.64 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEeccCCC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLP 89 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~~~~-----~v~~~i~~~~~~~ 89 (97)
.+.++++++||||||.+++.++.++++ +++++|++.|+..
T Consensus 123 ~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 123 PDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred cChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 355789999999999999999999874 6899999998653
No 82
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=6.7e-07 Score=57.71 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=49.6
Q ss_pred cccCCCCCC-cccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEeccCCC
Q psy11077 16 DLISLDVNA-KEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~-~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---~~v~~~i~~~~~~~ 89 (97)
.++|++... ..-.++++..++.+..-++-. ....+..++||||||.+|.+.+.+.. ..+.++++.++..|
T Consensus 40 qlPGR~~r~~ep~~~di~~Lad~la~el~~~----~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP 113 (244)
T COG3208 40 QLPGRGDRFGEPLLTDIESLADELANELLPP----LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAP 113 (244)
T ss_pred cCCCcccccCCcccccHHHHHHHHHHHhccc----cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCC
Confidence 456665542 334577777777776655521 25668999999999999999999854 24788888887776
No 83
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.45 E-value=1.9e-06 Score=54.55 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEeccCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLPM 90 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---~~v~~~i~~~~~~~~ 90 (97)
..++++.++...+.|... ....++.|+|||+||.+|+.++.+.. ..+..++++.+..+.
T Consensus 45 ~~si~~la~~y~~~I~~~----~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~ 106 (229)
T PF00975_consen 45 PDSIEELASRYAEAIRAR----QPEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPS 106 (229)
T ss_dssp ESSHHHHHHHHHHHHHHH----TSSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTT
T ss_pred CCCHHHHHHHHHHHhhhh----CCCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCC
Confidence 467888777777766665 13349999999999999999998753 459999999976664
No 84
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.38 E-value=2.5e-06 Score=52.70 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
+.+.++++++.+.+.+... .++++|++||.|+..++.++.+....|.|+++++|+..-.+
T Consensus 39 ~~P~~~dWi~~l~~~v~a~------~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~ 98 (181)
T COG3545 39 EAPVLDDWIARLEKEVNAA------EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRP 98 (181)
T ss_pred CCCCHHHHHHHHHHHHhcc------CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccc
Confidence 3467788888877777663 35699999999999999999998889999999999886553
No 85
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.38 E-value=5e-07 Score=62.33 Aligned_cols=72 Identities=24% Similarity=0.210 Sum_probs=46.1
Q ss_pred ccccCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 15 FDLISLDVNAK-EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 15 ~d~~g~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+|++|.|.+.. .-..+.+.....+.+.+.. ...+|..+|.++|.|+||.++.+++..++++++++|..++..
T Consensus 224 vDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~--~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 224 VDMPGQGESPKWPLTQDSSRLHQAVLDYLAS--RPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp E--TTSGGGTTT-S-S-CCHHHHHHHHHHHH--STTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred EccCCCcccccCCCCcCHHHHHHHHHHHHhc--CCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 48888887642 1222333444444444443 233477799999999999999999999988999999999863
No 86
>KOG2984|consensus
Probab=98.37 E-value=1.7e-07 Score=59.38 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=55.7
Q ss_pred cccccCCCCCCccc----HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 14 WFDLISLDVNAKED----ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 14 w~d~~g~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
| |-+|+|.|.+++ ..-+...+++..++.+.+ +.+++.++|+|-||..++..+.++++.|+.+|.+++...
T Consensus 77 w-DPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL-----k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ay 150 (277)
T KOG2984|consen 77 W-DPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL-----KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAY 150 (277)
T ss_pred E-CCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh-----CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccce
Confidence 6 889999886443 234444555566666776 889999999999999999999999999999999986553
No 87
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.37 E-value=1e-06 Score=57.51 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
...+.+..+|++ ...++.++..++|||+||.+++..+..+|+.+...+++||.+..++
T Consensus 119 fL~~~lkP~Ie~--~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n 176 (264)
T COG2819 119 FLTEQLKPFIEA--RYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHN 176 (264)
T ss_pred HHHHhhHHHHhc--ccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCC
Confidence 344445555554 2345777899999999999999999999999999999999886654
No 88
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.36 E-value=2.7e-06 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEeccCCCCCC
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPMHK 92 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~----~v~~~i~~~~~~~~~~ 92 (97)
.....+.+...++..... .+..+++++|||+||.+|..++..... ....++.+++......
T Consensus 7 ~~~~~~~i~~~~~~~~~~-~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~~~ 71 (153)
T cd00741 7 ARSLANLVLPLLKSALAQ-YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNA 71 (153)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccch
Confidence 344445555555554221 356799999999999999999888654 5677888877665443
No 89
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.36 E-value=1.7e-06 Score=57.10 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=51.1
Q ss_pred ccccCCCCCCc-----ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAK-----EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
.|.+|+.+... ...+++++.++.+.++++++ +.+.++-+|-..||.|.+.++..+|++|.|+|++++...
T Consensus 61 i~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f-----~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 61 IDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF-----GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCT 135 (283)
T ss_dssp EE-TTTSTT-----TT-----HHHHHCTHHHHHHHH-----T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S
T ss_pred EeCCCCCCCcccccccccccCHHHHHHHHHHHHHhC-----CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCC
Confidence 36677754431 13589999999999999998 789999999999999999999999999999999998654
Q ss_pred C
Q psy11077 90 M 90 (97)
Q Consensus 90 ~ 90 (97)
.
T Consensus 136 ~ 136 (283)
T PF03096_consen 136 A 136 (283)
T ss_dssp -
T ss_pred C
Confidence 3
No 90
>PRK10162 acetyl esterase; Provisional
Probab=98.36 E-value=4e-06 Score=56.17 Aligned_cols=43 Identities=40% Similarity=0.387 Sum_probs=35.9
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhC------CCcccEEEEeccCCCCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALTY------PKKLAGVVALSCWLPMH 91 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~~------~~~v~~~i~~~~~~~~~ 91 (97)
+++.++++|+|+|+||.+++.++.+. +..++++++++|+....
T Consensus 150 ~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 150 GINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred CCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 55778999999999999999998753 35799999999987653
No 91
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.36 E-value=2.3e-06 Score=61.14 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHH----HHHhCCC-cccEEEEeccCCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALY----SALTYPK-KLAGVVALSCWLPMHK 92 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~----~~~~~~~-~v~~~i~~~~~~~~~~ 92 (97)
...+++++++.+.+.++.+.+. .+.+++.++|+||||.+++. ++.++++ +|+.++++.+..++..
T Consensus 263 r~~~ldDYv~~i~~Ald~V~~~-tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~ 332 (560)
T TIGR01839 263 REWGLSTYVDALKEAVDAVRAI-TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTM 332 (560)
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCC
Confidence 4467889888888888887533 36789999999999998886 7788885 7999999998887663
No 92
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.35 E-value=2.7e-06 Score=58.55 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC------cccEEEEeccCC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK------KLAGVVALSCWL 88 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~------~v~~~i~~~~~~ 88 (97)
..+.+...|.+.|+...+.. .++++|+||||||.++..++...++ .|+++|.+++.+
T Consensus 98 ~~~~~~~~lk~~ie~~~~~~--~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 98 ERDEYFTKLKQLIEEAYKKN--GKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 45567777888887765332 6799999999999999999998753 599999998665
No 93
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.32 E-value=2.3e-06 Score=54.33 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC--------CCcccEE
Q psy11077 10 PMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY--------PKKLAGV 81 (97)
Q Consensus 10 ~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~--------~~~v~~~ 81 (97)
..++|++.... ......+++..+++.+.++.. + .=..|+|||+||.+|..++.+. ...++.+
T Consensus 69 ~~~~W~~~~~~----~~~~~~~~~sl~~l~~~i~~~-----G-PfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~ 138 (212)
T PF03959_consen 69 PFYSWWDPDDD----DHEYEGLDESLDYLRDYIEEN-----G-PFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFA 138 (212)
T ss_dssp --EESS---S-----SGGG---HHHHHHHHHHHHHH---------SEEEEETHHHHHHHHHHHHHHHHST--T----SEE
T ss_pred cceeeeecCCC----cccccCHHHHHHHHHHHHHhc-----C-CeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEE
Confidence 34667666533 234567788888888888875 1 2458999999999999888642 1258999
Q ss_pred EEeccCCCCC
Q psy11077 82 VALSCWLPMH 91 (97)
Q Consensus 82 i~~~~~~~~~ 91 (97)
|+++++.+..
T Consensus 139 V~~sg~~p~~ 148 (212)
T PF03959_consen 139 VFISGFPPPD 148 (212)
T ss_dssp EEES----EE
T ss_pred EEEcccCCCc
Confidence 9999988754
No 94
>KOG4391|consensus
Probab=98.32 E-value=1.2e-07 Score=60.67 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=55.5
Q ss_pred ccccCCCCCC-cccHHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNA-KEDETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~-~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
++++|+|.|. ...+..+.-..+. +++.+. +...+..++++.|.|.||++|+.++.+..+++.++|+.+.+.++.
T Consensus 112 vsYRGYG~S~GspsE~GL~lDs~a---vldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 112 VSYRGYGKSEGSPSEEGLKLDSEA---VLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred EEeeccccCCCCccccceeccHHH---HHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 4788988875 3344455444433 344443 233367789999999999999999999999999999999998873
No 95
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.29 E-value=6.8e-07 Score=55.99 Aligned_cols=61 Identities=31% Similarity=0.427 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHH----HhCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEeccCCCC
Q psy11077 30 GIKRAAQKIHSIIDKEV----SAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPM 90 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~----~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~----~v~~~i~~~~~~~~ 90 (97)
++....+|+.+.++.+. +.+.+.++|+|+|+|.||.+++.++.+..+ .++++++++|+..+
T Consensus 44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 44 PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred cccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 34445555555555544 235688899999999999999999986432 49999999998766
No 96
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.29 E-value=6e-06 Score=55.05 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEeccCCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAG---IPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLPMH 91 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~---~~~~~i~l~G~S~Gg~ia~~~~~~~~-----~~v~~~i~~~~~~~~~ 91 (97)
..++++.+++|.++++.++... ...++|+|+|||.|+.-+++|+.+.. ..|+++|+-+|..+-+
T Consensus 80 ~~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 80 TSSLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp S--HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TT
T ss_pred cchhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChh
Confidence 3578888888888888887442 25679999999999999999998753 5799999999976543
No 97
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.28 E-value=4.3e-06 Score=53.20 Aligned_cols=54 Identities=31% Similarity=0.382 Sum_probs=41.3
Q ss_pred HHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 36 QKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 36 ~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
+++++.++.+. ...++.++|.|+|.|.||-+|+.++.++| .|+++|.++|..-.
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 45677777776 33456679999999999999999999999 79999999876543
No 98
>PLN02872 triacylglycerol lipase
Probab=98.25 E-value=1.1e-06 Score=60.60 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=44.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEeccCCCC
Q psy11077 29 TGIKRAA-QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWLPM 90 (97)
Q Consensus 29 ~~~~~~~-~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~---~v~~~i~~~~~~~~ 90 (97)
.++++.+ .|+.++++.+++. ..++++++||||||.+++.++ .+|+ +|+.+++++|....
T Consensus 137 ~s~~e~a~~Dl~a~id~i~~~--~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~ 199 (395)
T PLN02872 137 WSWQELALYDLAEMIHYVYSI--TNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYL 199 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHhc--cCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhh
Confidence 3566666 7899999987533 236899999999999998555 5665 68888888887644
No 99
>KOG2931|consensus
Probab=98.24 E-value=4.1e-06 Score=55.52 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=58.7
Q ss_pred cccCCCCCCc---c--cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 16 DLISLDVNAK---E--DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~~---~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+.+|+.+... . ..+++++.+++|..+++++ +.+.++-+|-..|+.|..+++..||++|.|+|++++-..
T Consensus 85 ~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f-----~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 85 DAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF-----GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc-----CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 5566654431 1 3589999999999999998 889999999999999999999999999999999987654
No 100
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.23 E-value=1.4e-05 Score=54.07 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEeccCCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWLPMHKS 93 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~--~v~~~i~~~~~~~~~~~ 93 (97)
.......+.+.++++.+. ..+++.++++|+|||+||.+|-.+..+... ++..+..+.|..|.-+.
T Consensus 125 ~n~~~vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~~ 192 (331)
T PF00151_consen 125 ANTRLVGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFEN 192 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccccC
Confidence 334455666777777776 567788999999999999999999999887 89999999988876543
No 101
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.23 E-value=5.5e-06 Score=54.24 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=60.8
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
.|.+|.+.|.........+..+|..+.|+.+..+.+...+|.++|.|.+|..++.++...|..+++++...+..+.-.
T Consensus 63 ~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 63 QDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp EE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred ECCcccccCCCccccCChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 488998888654443377788888999998876677777999999999999999999988889999999988776654
No 102
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.22 E-value=6.3e-06 Score=51.63 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
...+...+.+.+.++.. ..+.+.|+|.||||..|..++.+++ +++ |+++|.+...
T Consensus 40 ~~p~~a~~~l~~~i~~~-----~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~ 94 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEEL-----KPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPY 94 (187)
T ss_pred cCHHHHHHHHHHHHHhC-----CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHH
Confidence 34455556666666665 5556999999999999999999987 333 8889887644
No 103
>KOG1553|consensus
Probab=98.20 E-value=5.2e-06 Score=56.49 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=55.7
Q ss_pred CCCCCCccccccCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 7 GGYPMPSWFDLISLDVNAK-EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 7 ~~~~~~~w~d~~g~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
.|+.--.| .++|.+.|.. +....-...++.+.++.-+ ..++..++|++.|+|.||.-+++++..||+ |+++|+-+
T Consensus 267 lgYsvLGw-NhPGFagSTG~P~p~n~~nA~DaVvQfAI~--~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDA 342 (517)
T KOG1553|consen 267 LGYSVLGW-NHPGFAGSTGLPYPVNTLNAADAVVQFAIQ--VLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDA 342 (517)
T ss_pred hCceeecc-CCCCccccCCCCCcccchHHHHHHHHHHHH--HcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeec
Confidence 34444556 8888876653 2333333334444433322 336778899999999999999999999996 99999998
Q ss_pred cCCCC
Q psy11077 86 CWLPM 90 (97)
Q Consensus 86 ~~~~~ 90 (97)
.+-++
T Consensus 343 tFDDl 347 (517)
T KOG1553|consen 343 TFDDL 347 (517)
T ss_pred chhhh
Confidence 87543
No 104
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.19 E-value=4.2e-06 Score=55.81 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=39.4
Q ss_pred HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 47 SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 47 ~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..++|..+|++.|.|+||..++.++.++|+.+.+.+.+++.-.
T Consensus 263 ~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 263 TYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred ccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 5577999999999999999999999999999999999987654
No 105
>KOG4667|consensus
Probab=98.18 E-value=4.2e-06 Score=53.54 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=58.2
Q ss_pred ccccCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCce--EEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 15 FDLISLDVNAKE-DETGIKRAAQKIHSIIDKEVSAGIPSDRI--VIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 15 ~d~~g~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~i--~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
||++|.|+|... +.-.....++||..+++.+. +..++ +++|||-||.+++.++.++.+ +.-+|-+++.+...
T Consensus 68 fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s----~~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~ 142 (269)
T KOG4667|consen 68 FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFS----NSNRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLK 142 (269)
T ss_pred EEecCCCCcCCccccCcccchHHHHHHHHHHhc----cCceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchh
Confidence 699999998643 33333445589999999983 33443 899999999999999999997 88899999888776
Q ss_pred CCC
Q psy11077 92 KSF 94 (97)
Q Consensus 92 ~~~ 94 (97)
..+
T Consensus 143 ~~I 145 (269)
T KOG4667|consen 143 NGI 145 (269)
T ss_pred cch
Confidence 554
No 106
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.17 E-value=7e-06 Score=55.84 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceE-EEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIV-IGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~-l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
..++++.++.-..+++++ +.+++. ++|-||||+.++.|+..||+++..+|.+++.....
T Consensus 126 ~~ti~D~V~aq~~ll~~L-----GI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s 185 (368)
T COG2021 126 VITIRDMVRAQRLLLDAL-----GIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLS 185 (368)
T ss_pred cccHHHHHHHHHHHHHhc-----CcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCC
Confidence 467777777777777887 778875 99999999999999999999999999998765543
No 107
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.16 E-value=1.4e-05 Score=53.06 Aligned_cols=56 Identities=27% Similarity=0.453 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 34 AAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 34 ~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
.+..|.+++..+. +.+++.++|++.|.|.||.|+..+++.+|+.+.++..+++..+
T Consensus 124 dVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~ 180 (312)
T COG3509 124 DVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLA 180 (312)
T ss_pred HHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccC
Confidence 3455666666665 5578888999999999999999999999999999999887663
No 108
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.14 E-value=1.7e-05 Score=60.25 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC-CCcccEEEEeccCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY-PKKLAGVVALSCWLPM 90 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~-~~~v~~~i~~~~~~~~ 90 (97)
.++.+++..+.+.++.+... ..++++++||||||.+++.++..+ +++|++++++++...+
T Consensus 119 ~~l~~~i~~l~~~l~~v~~~--~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 119 RNLADHVVALSEAIDTVKDV--TGRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred CCHHHHHHHHHHHHHHHHHh--hCCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 46666666666666654322 235899999999999999888755 5689999998877544
No 109
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.13 E-value=2.2e-05 Score=54.63 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=54.0
Q ss_pred cccCCCCCCcc--------cHHHHHHHHHHHHHHHHHHHHh--CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 16 DLISLDVNAKE--------DETGIKRAAQKIHSIIDKEVSA--GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 16 d~~g~~~~~~~--------~~~~~~~~~~~l~~~i~~~~~~--~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
++|.+|.|.+. ..-+.++...|+..|++.+... ..+..+++++|-|.||++|+++-.+||+.|.|.+..|
T Consensus 66 EHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASS 145 (434)
T PF05577_consen 66 EHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASS 145 (434)
T ss_dssp --TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET
T ss_pred ehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEecc
Confidence 56666665422 2257788999999999988622 2244589999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q psy11077 86 CWLPMHKSF 94 (97)
Q Consensus 86 ~~~~~~~~~ 94 (97)
+......++
T Consensus 146 apv~a~~df 154 (434)
T PF05577_consen 146 APVQAKVDF 154 (434)
T ss_dssp --CCHCCTT
T ss_pred ceeeeeccc
Confidence 877665544
No 110
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=2.4e-05 Score=50.63 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 32 KRAAQKIHSIIDKEVSAG-IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~-~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
.+...++...++.+..+. .+.++|.++|+||||.+++.++.+.| .+++.+.+.|....
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~ 148 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA 148 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC
Confidence 567778888888876443 56788999999999999999999998 79999999877663
No 111
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.11 E-value=2.1e-05 Score=50.79 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC----C-----CcccEEEEeccCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY----P-----KKLAGVVALSCWLPM 90 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~----~-----~~v~~~i~~~~~~~~ 90 (97)
+..+.......+.+++..+... .+.++|+|++||||+.+.+..+... + .++..+|+++|=.+.
T Consensus 68 d~~~a~~s~~~l~~~L~~L~~~-~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 68 DRESARFSGPALARFLRDLARA-PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHhc-cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 4456777888899999888533 3678999999999999999887762 1 257899999887655
No 112
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.09 E-value=1.4e-05 Score=50.59 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy11077 32 KRAAQKIHSIIDKEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~-~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~ 86 (97)
+...+++...++.+... ..+.++|.++|+|+||.+++.++.+. +.+++++.+.|
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 45566777777777632 24667999999999999999999888 57999999988
No 113
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.04 E-value=2.9e-05 Score=51.36 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=51.2
Q ss_pred cccCCCCCC--cccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 16 DLISLDVNA--KEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 16 d~~g~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
.++|.+.+. ....++-++.......+++.+ ++ .++++++|||.||-.|+.++..+| ..|+++++|.
T Consensus 69 N~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l---~i-~~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 69 NYPGFGFTPGYPDQQYTNEERQNFVNALLDEL---GI-KGKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CCCCCCCCCCCcccccChHHHHHHHHHHHHHc---CC-CCceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 566766654 334577777788888888887 33 368999999999999999999996 6799998754
No 114
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.03 E-value=2.5e-05 Score=54.13 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC-----CCcccEEEEeccCCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY-----PKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~-----~~~v~~~i~~~~~~~~~~ 92 (97)
...+++++++.+.++++.+ +.+ ++++|.||||.+++.++..+ |..++.++++++..+++.
T Consensus 148 ~~f~ldDYi~~l~~~i~~~-----G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~ 212 (406)
T TIGR01849 148 GKFDLEDYIDYLIEFIRFL-----GPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARA 212 (406)
T ss_pred CCCCHHHHHHHHHHHHHHh-----CCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCC
Confidence 4568899999999999876 555 99999999999877666654 557999999999888765
No 115
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=98.02 E-value=1.9e-05 Score=46.54 Aligned_cols=41 Identities=34% Similarity=0.377 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
...+.+.+.++.+.... +..++.+.|||+||.+|..++...
T Consensus 45 ~~~~~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 45 SLYDQILDALKELVEKY-PDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-cCccchhhccchHHHHHHHHHHhh
Confidence 34445555555543332 357899999999999998888763
No 116
>KOG3724|consensus
Probab=98.02 E-value=1.8e-05 Score=58.37 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=47.0
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHHHHHHHHH---Hh--CCC---CCceEEEEeChhHHHHHHHHHh---CCCcccEEE
Q psy11077 14 WFDLISLDVNAKEDETGIKRAAQKIHSIIDKEV---SA--GIP---SDRIVIGGFSQGGALALYSALT---YPKKLAGVV 82 (97)
Q Consensus 14 w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~---~~--~~~---~~~i~l~G~S~Gg~ia~~~~~~---~~~~v~~~i 82 (97)
||...-.++=...+-..+++..+++.+.|+.++ +. +.+ ...|+++||||||.+|..++.. .+..|.-+|
T Consensus 135 FFaVDFnEe~tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntII 214 (973)
T KOG3724|consen 135 FFAVDFNEEFTAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTII 214 (973)
T ss_pred eEEEcccchhhhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhh
Confidence 444444443333344677888888888777665 22 222 4569999999999999877653 244566666
Q ss_pred Eecc
Q psy11077 83 ALSC 86 (97)
Q Consensus 83 ~~~~ 86 (97)
..+.
T Consensus 215 Tlss 218 (973)
T KOG3724|consen 215 TLSS 218 (973)
T ss_pred hhcC
Confidence 6653
No 117
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.99 E-value=2.4e-05 Score=49.07 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC----CcccEEEEeccCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP----KKLAGVVALSCWLP 89 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~----~~v~~~i~~~~~~~ 89 (97)
+++-++.+.++.++++.. ...++.++++|+|+|+|+-+.-....+.| ++|+.+++++|...
T Consensus 44 ~rtP~~~a~Dl~~~i~~y-~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~ 108 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHY-RARWGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTT 108 (192)
T ss_pred hCCHHHHHHHHHHHHHHH-HHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCc
Confidence 466778888999999887 44468899999999999988888888877 47899999887653
No 118
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.96 E-value=3.4e-05 Score=52.25 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=44.8
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEV--SAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
|.++|-+.|.... +.++.+.+-...++.+. .++++.++|++.|||+||.++..++.++.
T Consensus 177 fNYpGVg~S~G~~--s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 177 FNYPGVGSSTGPP--SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred ECCCccccCCCCC--CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 4788888875433 24777777777777775 35678899999999999999998877754
No 119
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.95 E-value=5e-05 Score=52.10 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEeccCCCCC
Q psy11077 26 EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLPMH 91 (97)
Q Consensus 26 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~-----~~v~~~i~~~~~~~~~ 91 (97)
..++.+.+.+.....+++.. +.++|+|+|-|.||.+++.+++... ..++++|++|||..+.
T Consensus 173 ~yPtQL~qlv~~Y~~Lv~~~-----G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 173 KYPTQLRQLVATYDYLVESE-----GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred cCchHHHHHHHHHHHHHhcc-----CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 34567777666666666544 6789999999999999998877532 2489999999999876
No 120
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.94 E-value=2.9e-05 Score=50.89 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhC-----CCcccEEEEeccCC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALTY-----PKKLAGVVALSCWL 88 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~~-----~~~v~~~i~~~~~~ 88 (97)
.|..++.|+|||.||-++..++..+ +.+++++|++.|.-
T Consensus 88 ~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 88 PDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred ccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 4777999999999999999999988 55899999999987
No 121
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.94 E-value=4.1e-05 Score=48.92 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEeccCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWL 88 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~-----~~v~~~i~~~~~~ 88 (97)
.......+.+...++.++.+ .+..++++.|||+||.+|..++.... ..+..+.+-+|..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~-~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 105 SAYKSLYNQVLPELKSALKQ-YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34444445555555554322 35678999999999999998887632 3355554445544
No 122
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.94 E-value=6.5e-05 Score=55.87 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=56.1
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHH---------------hCCCCCceEEEEeChhHHHHHHHHHhCCCccc
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVS---------------AGIPSDRIVIGGFSQGGALALYSALTYPKKLA 79 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~---------------~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~ 79 (97)
+|.+|.+.|.........+..++..++|+.+.. +.+...+|.++|.|+||.+++.++...++.++
T Consensus 285 ~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~Lk 364 (767)
T PRK05371 285 VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLE 364 (767)
T ss_pred EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcce
Confidence 477888777544322225566677777777641 23346799999999999999999999888999
Q ss_pred EEEEeccCCCC
Q psy11077 80 GVVALSCWLPM 90 (97)
Q Consensus 80 ~~i~~~~~~~~ 90 (97)
++|..+++...
T Consensus 365 AIVp~a~is~~ 375 (767)
T PRK05371 365 TIIPEAAISSW 375 (767)
T ss_pred EEEeeCCCCcH
Confidence 99998877543
No 123
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.90 E-value=8.3e-05 Score=50.16 Aligned_cols=58 Identities=28% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 31 IKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
......+....++.+. ...+|.++|.+.|.|+||.+++.++...+ +|++++...|++.
T Consensus 152 yr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~ 210 (320)
T PF05448_consen 152 YRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLC 210 (320)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSS
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCcc
Confidence 3344556666666665 44567889999999999999999999887 6999999988764
No 124
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.88 E-value=7.1e-05 Score=48.14 Aligned_cols=52 Identities=29% Similarity=0.416 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC----CCcccEEEEeccC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY----PKKLAGVVALSCW 87 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~----~~~v~~~i~~~~~ 87 (97)
......+++.++++.. + .++++.|||.||.+|...+... .++|..+..+.+.
T Consensus 67 ~q~~A~~yl~~~~~~~-----~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 67 QQKSALAYLKKIAKKY-----P-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHHhC-----C-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 3334444444444442 2 3599999999999999999884 3578888877543
No 125
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.87 E-value=6.6e-05 Score=51.71 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+.++|.++|||+||+.++..+.+. .++++.|++.||+.
T Consensus 226 D~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W~~ 263 (379)
T PF03403_consen 226 DLSRIGLAGHSFGGATALQALRQD-TRFKAGILLDPWMF 263 (379)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHH--TT--EEEEES---T
T ss_pred chhheeeeecCchHHHHHHHHhhc-cCcceEEEeCCccc
Confidence 355799999999999999887777 47999999988764
No 126
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.86 E-value=0.00027 Score=43.96 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~ 86 (97)
.....+.-...|.+|++.+....-...++.++|||+|..++-..+.+.+..++.++++++
T Consensus 83 ~~~~A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GS 142 (177)
T PF06259_consen 83 SPGYARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGS 142 (177)
T ss_pred CchHHHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECC
Confidence 345567777788888888863333566899999999999999998886778999998863
No 127
>KOG1838|consensus
Probab=97.85 E-value=5.3e-05 Score=52.40 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=48.8
Q ss_pred ccccCCCCCCcccHHH-HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKEDETG-IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~---~v~~~i~~~~~~~ 89 (97)
+..+|.+.++-.+..- -.-+.+|+.++++.+. ..+...+++.+|+||||.+.+.|+.+..+ .+.++.+++||-.
T Consensus 160 fN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~-~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~ 237 (409)
T KOG1838|consen 160 FNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIK-KRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDL 237 (409)
T ss_pred ECCCCCCCCccCCCceeecCCHHHHHHHHHHHH-HhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchh
Confidence 3556655543222111 1124556777777773 33467799999999999999999998653 4677777778764
No 128
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.85 E-value=0.00029 Score=43.27 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=44.0
Q ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEeccCCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~---~~~v~~~i~~~~~~~ 89 (97)
+.+|++.+.. ...+.+..++.+...+... ....+++++|||+||.++..++.+. ++.+.+++++.+..+
T Consensus 32 ~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~----~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~~~~ 103 (212)
T smart00824 32 PLPGFGPGEP-LPASADALVEAQAEAVLRA----AGGRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDTYPP 103 (212)
T ss_pred cCCCCCCCCC-CCCCHHHHHHHHHHHHHHh----cCCCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEccCCC
Confidence 4555544322 1234555555444444332 2456899999999999999888863 456899988876543
No 129
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.84 E-value=4.5e-05 Score=47.95 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=48.4
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
|+++|-|.|+......+.+ .+|....++.++.+..+.....|.|+|.|+.|+..++.+.|+ ....|..+|...
T Consensus 66 fNfRgVG~S~G~fD~GiGE-~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~ 138 (210)
T COG2945 66 FNFRGVGRSQGEFDNGIGE-LEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPIN 138 (210)
T ss_pred ecccccccccCcccCCcch-HHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCC
Confidence 5778877776544433333 334555555554444444455899999999999999999985 666666665544
No 130
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.0001 Score=50.30 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC--------CCcccEEEEeccCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY--------PKKLAGVVALSCWLP 89 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~--------~~~v~~~i~~~~~~~ 89 (97)
+..+.+...++|+.++..+.+.. ..++|+|++||||..+++..+.+. +.+++-+|+.+|=..
T Consensus 166 DreS~~~Sr~aLe~~lr~La~~~-~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 166 DRESTNYSRPALERLLRYLATDK-PVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred chhhhhhhHHHHHHHHHHHHhCC-CCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 45778888888999999885433 578999999999999999998873 246888888877544
No 131
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.84 E-value=8.9e-05 Score=47.56 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+.++++.+|+++.+.. .+. +|-|+|||||+.++..++...
T Consensus 57 ~~~~~l~~fI~~Vl~~-TGa-kVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 57 ESAKQLRAFIDAVLAY-TGA-KVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp HHHHHHHHHHHHHHHH-HT---EEEEEETCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHh-hCC-EEEEEEcCCcCHHHHHHHHHc
Confidence 4457788888887622 266 999999999999999998754
No 132
>PRK10115 protease 2; Provisional
Probab=97.82 E-value=5.9e-05 Score=55.46 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 35 AQKIHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 35 ~~~l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
.+|+.+.++.++..++ +.+++.+.|-|.||.++...+.++|++++++|...|+..+..
T Consensus 505 ~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~ 563 (686)
T PRK10115 505 FNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVT 563 (686)
T ss_pred HHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhh
Confidence 4455555555554443 778999999999999999999999999999999999988764
No 133
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.82 E-value=8.6e-05 Score=55.23 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----h------CCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 29 TGIKRAAQKIHSIIDKEVS-----A------GIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~-----~------~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
..+.+.+.|+..+...+.. . ..+..+++++||||||.++..++...
T Consensus 520 Dn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 520 DNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred cCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 3778888898888887740 1 13456899999999999999999763
No 134
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.80 E-value=0.00015 Score=56.06 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=51.3
Q ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh---CCCcccEEEEeccCCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT---YPKKLAGVVALSCWLP 89 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~---~~~~v~~~i~~~~~~~ 89 (97)
+.+|++.. .....++++.++++.+.++.+ ....+++++||||||.++..++.+ .++.+..++++.+..+
T Consensus 1101 ~~~g~~~~-~~~~~~l~~la~~~~~~i~~~----~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~~ 1172 (1296)
T PRK10252 1101 QSPRPDGP-MQTATSLDEVCEAHLATLLEQ----QPHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTWPP 1172 (1296)
T ss_pred ECCCCCCC-CCCCCCHHHHHHHHHHHHHhh----CCCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCCCc
Confidence 44555433 233468888888888888775 134589999999999999999986 4678999999886543
No 135
>KOG4627|consensus
Probab=97.78 E-value=1.3e-05 Score=51.01 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC-CCcccEEEEeccCCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY-PKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~-~~~v~~~i~~~~~~~~~~ 92 (97)
...++++.+.++...++.+++.-...+.+.+.|||.|+.+++.++.+. ..+|.|+++.++.+.+++
T Consensus 110 q~htL~qt~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~E 176 (270)
T KOG4627|consen 110 QVHTLEQTMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRE 176 (270)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHH
Confidence 345777877777777777764433566799999999999999998874 458999999999877654
No 136
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.76 E-value=0.00014 Score=51.30 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCCCceEEEEeChhHHHHHHHHHhC----------CCcccEEEEeccCCCCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSA--GIPSDRIVIGGFSQGGALALYSALTY----------PKKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~--~~~~~~i~l~G~S~Gg~ia~~~~~~~----------~~~v~~~i~~~~~~~~~~~ 93 (97)
..+.++.++++.++++...+. .....+++|+|||+||..+-.++.+- +-.++|+++-+|+......
T Consensus 144 ~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp~~q 221 (462)
T PTZ00472 144 DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDPYTQ 221 (462)
T ss_pred CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccChhhh
Confidence 345677888888888876522 22457899999999998776666652 1248999999998865543
No 137
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.76 E-value=0.00019 Score=45.67 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.++..-.|+.+..+..++...+..+++|+|||||+.+...++.++
T Consensus 72 a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 72 AFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 333444455555554443333557899999999999999999875
No 138
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.74 E-value=0.00013 Score=49.49 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEeccCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~--~~v~~~i~~~~~~~~~ 91 (97)
...++....+.+.+... +.+++.++||||||.++..++...+ .+|+.++.+++.-.-.
T Consensus 108 ~~~~ql~~~V~~~l~~~-----ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~Gt 167 (336)
T COG1075 108 VRGEQLFAYVDEVLAKT-----GAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHGT 167 (336)
T ss_pred ccHHHHHHHHHHHHhhc-----CCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCCCc
Confidence 34444444444444443 6689999999999999999999888 7899999998765443
No 139
>COG0627 Predicted esterase [General function prediction only]
Probab=97.68 E-value=0.00025 Score=47.81 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=36.7
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 54 RIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
+..++||||||.-|+.++.++|++++.+..++|.....+
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~ 191 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSS 191 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhceeccccccccccc
Confidence 789999999999999999999999999999999988774
No 140
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.66 E-value=0.00029 Score=43.80 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh--CC----CcccEEEEeccC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT--YP----KKLAGVVALSCW 87 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~--~~----~~v~~~i~~~~~ 87 (97)
...+...-+..+.+.++...... ...+++|+|+|+|+.++..++.. .+ ++|.++++++-.
T Consensus 56 y~~S~~~G~~~~~~~i~~~~~~C-P~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP 121 (179)
T PF01083_consen 56 YGDSVAAGVANLVRLIEEYAARC-PNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDP 121 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-TTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-T
T ss_pred ccccHHHHHHHHHHHHHHHHHhC-CCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCC
Confidence 35667777777888777765444 45699999999999999999988 22 578999998733
No 141
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.64 E-value=0.00037 Score=46.41 Aligned_cols=63 Identities=29% Similarity=0.240 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHH----HhCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEeccCCCCCC
Q psy11077 30 GIKRAAQKIHSIIDKEV----SAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPMHK 92 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~----~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~----~v~~~i~~~~~~~~~~ 92 (97)
.+...++|+.+.++.+. +.+.+.++|.++|+|.||.+++.++..-.+ ...+.++++|+.....
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 33444444444444443 235678999999999999999999887553 5899999999987764
No 142
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.63 E-value=0.00013 Score=50.62 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=49.7
Q ss_pred cHHHHHHHH-HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCc-ccEEEEeccCCCCCC
Q psy11077 27 DETGIKRAA-QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK-LAGVVALSCWLPMHK 92 (97)
Q Consensus 27 ~~~~~~~~~-~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~-v~~~i~~~~~~~~~~ 92 (97)
....+++++ +.+.+.++.+.+ ..+.++|.++|+|+||.+++.++..++.+ |+.+.++.+..++..
T Consensus 155 ~~~~~edYi~e~l~~aid~v~~-itg~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~ 221 (445)
T COG3243 155 AAKNLEDYILEGLSEAIDTVKD-ITGQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSH 221 (445)
T ss_pred hhccHHHHHHHHHHHHHHHHHH-HhCccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhcc
Confidence 356667766 556665555532 23678999999999999999999998877 999999988777664
No 143
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=5.3e-05 Score=47.07 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=37.7
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSF 94 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~~~ 94 (97)
.+.++-|.||||..|..+..++|+.+.++|.+++..+..+.+
T Consensus 101 gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardff 142 (227)
T COG4947 101 GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFF 142 (227)
T ss_pred CCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhc
Confidence 568899999999999999999999999999999998776543
No 144
>PLN02454 triacylglycerol lipase
Probab=97.61 E-value=0.00044 Score=48.11 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCC--ceEEEEeChhHHHHHHHHHh
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSD--RIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~--~i~l~G~S~Gg~ia~~~~~~ 73 (97)
...+++...++.+.+.. ... +|++.|||+||++|+..+..
T Consensus 207 S~r~qvl~~V~~l~~~Y-p~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERY-KDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCceEEEEecCHHHHHHHHHHHH
Confidence 34455555566554322 233 59999999999999999864
No 145
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00014 Score=52.90 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHH-hCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 34 AAQKIHSIIDKEVS-AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 34 ~~~~l~~~i~~~~~-~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
..+|+.+.++.+.+ ..++.+++.++|||.||.+++..+.+.+ .+++.+...+..
T Consensus 453 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~ 507 (620)
T COG1506 453 DLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGV 507 (620)
T ss_pred cHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcc
Confidence 34455555554332 3346779999999999999999999999 677776666533
No 146
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.60 E-value=0.00021 Score=45.60 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHh
Q psy11077 29 TGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+++...+.+.+-+.... .......++.++||||||.++-.++..
T Consensus 53 ~gI~~~g~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 53 DGIDVCGERLAEEILEHIKDYESKIRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred hhhHHHHHHHHHHHHHhccccccccccceEEEecccHHHHHHHHHH
Confidence 445555544443333332 112123589999999999999877764
No 147
>KOG2183|consensus
Probab=97.55 E-value=0.00015 Score=50.37 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec-cCCCCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS-CWLPMHKSFP 95 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~-~~~~~~~~~~ 95 (97)
-+.++...|...++..+. .......+|+.+|-|.||++++++-.+||..+.|++..+ |.+-+.+-+|
T Consensus 142 LtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f~d~vp 210 (492)
T KOG2183|consen 142 LTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYFEDTVP 210 (492)
T ss_pred ccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEeecCCCC
Confidence 345666666777777764 222245589999999999999999999999888877765 6665555554
No 148
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.53 E-value=0.00021 Score=51.68 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC---------------CcccEEEEeccCC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP---------------KKLAGVVALSCWL 88 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---------------~~v~~~i~~~~~~ 88 (97)
..+++...|+..|+...+.. +.++++|+|||||+.+++.++.... ..|++.|.+++.+
T Consensus 191 ~rd~YF~rLK~lIE~ay~~n-ggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~ 263 (642)
T PLN02517 191 VRDQTLSRLKSNIELMVATN-GGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPF 263 (642)
T ss_pred hhhHHHHHHHHHHHHHHHHc-CCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheeccccc
Confidence 34556666777777664332 4578999999999999999887432 2478888888654
No 149
>PRK04940 hypothetical protein; Provisional
Probab=97.53 E-value=0.00071 Score=42.19 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 35 AQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 35 ~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
...+.+.+..+.... ..+++.|+|.|+||+-|..++.++.- ..|+++|.....
T Consensus 43 ~~~l~~~i~~~~~~~-~~~~~~liGSSLGGyyA~~La~~~g~---~aVLiNPAv~P~ 95 (180)
T PRK04940 43 MQHLLKEVDKMLQLS-DDERPLICGVGLGGYWAERIGFLCGI---RQVIFNPNLFPE 95 (180)
T ss_pred HHHHHHHHHHhhhcc-CCCCcEEEEeChHHHHHHHHHHHHCC---CEEEECCCCChH
Confidence 444555555432111 12579999999999999999999883 677888877553
No 150
>KOG1515|consensus
Probab=97.52 E-value=0.00071 Score=46.02 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCCceEEEEeChhHHHHHHHHHhC------CCcccEEEEeccCCCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDK-EVSAGIPSDRIVIGGFSQGGALALYSALTY------PKKLAGVVALSCWLPMHKSF 94 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~-~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~------~~~v~~~i~~~~~~~~~~~~ 94 (97)
..+++..+.+.-+.++ +...+.|.++++|+|-|.||.+|..++.+. +.++++.|++.|++...+..
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~ 213 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRT 213 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCC
Confidence 4555555555555554 445567889999999999999999998873 24799999999999776543
No 151
>PLN02571 triacylglycerol lipase
Probab=97.51 E-value=0.00033 Score=48.74 Aligned_cols=20 Identities=45% Similarity=0.544 Sum_probs=18.2
Q ss_pred ceEEEEeChhHHHHHHHHHh
Q psy11077 54 RIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~ 73 (97)
+|++.|||+||++|...+..
T Consensus 227 sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 227 SITICGHSLGAALATLNAVD 246 (413)
T ss_pred cEEEeccchHHHHHHHHHHH
Confidence 69999999999999998875
No 152
>PLN02162 triacylglycerol lipase
Probab=97.49 E-value=0.00058 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.9
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+..++++.|||+||++|..++.
T Consensus 276 p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 276 KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred CCceEEEEecChHHHHHHHHHH
Confidence 4568999999999999998754
No 153
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00023 Score=47.44 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
....+++|..+++......-....-+|.|.|+||.+++..+.++|+.|..++..||.+.-.
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 3334444444444432111144567999999999999999999999999999999877543
No 154
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.46 E-value=0.00056 Score=44.83 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEeccCCC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLP 89 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~-----~~v~~~i~~~~~~~ 89 (97)
+..++...+..++..| ...++.+.+.++||||||.-...|+..+. ..++.+|.+++.+.
T Consensus 114 s~~~~s~wlk~~msyL-~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 114 SGLDQSKWLKKAMSYL-QKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred chhhHHHHHHHHHHHH-HHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 3334444555555555 33457899999999999999999998863 25899999987766
No 155
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.44 E-value=0.00093 Score=43.89 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEeccCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLP 89 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~---~~~v~~~i~~~~~~~ 89 (97)
...++++.++...+.|.+. . +..++.|.|+|+||.+|...+.+. .+.|..++++.+..+
T Consensus 43 ~~~~l~~~a~~yv~~Ir~~---Q-P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 43 PFASLDDMAAAYVAAIRRV---Q-PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHh---C-CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 3466777777666666655 2 456999999999999999999874 347999999987776
No 156
>PLN00413 triacylglycerol lipase
Probab=97.44 E-value=0.00069 Score=47.83 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.4
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+..++++.|||+||++|..++.
T Consensus 282 p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 282 PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred CCCeEEEEecCHHHHHHHHHHH
Confidence 5668999999999999998874
No 157
>KOG2100|consensus
Probab=97.42 E-value=0.00044 Score=51.50 Aligned_cols=43 Identities=28% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCC-CcccEEEEeccCCCCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALTYP-KKLAGVVALSCWLPMH 91 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~~~-~~v~~~i~~~~~~~~~ 91 (97)
.+|.+++.++|+|.||.+++..+...+ +.++..+.++|.....
T Consensus 604 ~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 604 FIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL 647 (755)
T ss_pred cccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee
Confidence 568899999999999999999999998 5566669999998766
No 158
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.42 E-value=0.0004 Score=45.80 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh--CCCCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEeccCCCCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSA--GIPSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWLPMH 91 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~--~~~~~~i~l~G~S~Gg~ia~~~~~~~~--~~v~~~i~~~~~~~~~ 91 (97)
+..+....++.+.+-++..+.. ..+..++.++|||.||-.|..+++.+. -+++++|.+.|..-..
T Consensus 92 Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 92 EIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTS 160 (307)
T ss_pred HHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCC
Confidence 3456666666666666665422 235678999999999999999999874 3689999988876444
No 159
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=97.41 E-value=0.00025 Score=48.86 Aligned_cols=48 Identities=27% Similarity=0.232 Sum_probs=32.8
Q ss_pred HHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy11077 38 IHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86 (97)
Q Consensus 38 l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~ 86 (97)
....++.+. ...++.++|.++||||||..++.++...+ +|++.|..+-
T Consensus 210 dmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~ 258 (390)
T PF12715_consen 210 DMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD-RIKATVANGY 258 (390)
T ss_dssp HHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-
T ss_pred HHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch-hhHhHhhhhh
Confidence 334455544 45668889999999999999999888877 6877776543
No 160
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.40 E-value=0.0012 Score=47.27 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
.++++.......|++++.....+..+.+++|.||||..++.++..+|+.+.-+|+-+..++.-
T Consensus 116 QTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 116 QTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 578888888888888877555566699999999999999999999999999999887666543
No 161
>KOG2369|consensus
Probab=97.39 E-value=0.00065 Score=47.78 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK 76 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~ 76 (97)
....+++...|+..++...+.. +.++++|++||||+.+...++..+++
T Consensus 158 ~e~rd~yl~kLK~~iE~~~~~~-G~kkVvlisHSMG~l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 158 SEERDQYLSKLKKKIETMYKLN-GGKKVVLISHSMGGLYVLYFLKWVEA 205 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc-CCCceEEEecCCccHHHHHHHhcccc
Confidence 3455666666777776654332 56899999999999999999999886
No 162
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.37 E-value=0.00063 Score=42.02 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec-cCCCC
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS-CWLPM 90 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~-~~~~~ 90 (97)
...++..+.++...+ ...+.++-|+||||-++...+....-.|+++++++ |+.+.
T Consensus 72 ~~~~~~~~aql~~~l-----~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhpp 127 (213)
T COG3571 72 NPEYIVAIAQLRAGL-----AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHPP 127 (213)
T ss_pred CHHHHHHHHHHHhcc-----cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCCC
Confidence 344555555555554 55689999999999999998888776799999997 55543
No 163
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.37 E-value=0.0021 Score=43.22 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=36.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCC-cccEEEEeccCCCCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWLPMHK 92 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~-~v~~~i~~~~~~~~~~ 92 (97)
+..+++|+||+.|+..++.++...+. .++++|++++..+...
T Consensus 191 ~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~ 233 (310)
T PF12048_consen 191 GGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPD 233 (310)
T ss_pred CCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcch
Confidence 55679999999999999999998875 5999999999987764
No 164
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.33 E-value=0.00095 Score=44.87 Aligned_cols=36 Identities=19% Similarity=-0.013 Sum_probs=31.6
Q ss_pred CceEEEEeChhHHHHHHHHHhCCC--cccEEEEeccCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWL 88 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~--~v~~~i~~~~~~ 88 (97)
+-+.++|||+||.++..++.+.++ +|+.+|.+++.-
T Consensus 94 ~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 94 QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 359999999999999999999886 699999998653
No 165
>PLN02310 triacylglycerol lipase
Probab=97.30 E-value=0.0012 Score=45.84 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=18.5
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy11077 53 DRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+|.+.|||+||++|...+..
T Consensus 209 ~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 209 VSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred ceEEEEcccHHHHHHHHHHHH
Confidence 479999999999999988854
No 166
>PLN02606 palmitoyl-protein thioesterase
Probab=97.29 E-value=0.0012 Score=44.33 Aligned_cols=36 Identities=19% Similarity=-0.033 Sum_probs=31.6
Q ss_pred CceEEEEeChhHHHHHHHHHhCCC--cccEEEEeccCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWL 88 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~--~v~~~i~~~~~~ 88 (97)
+-+.++||||||.++..++.+.|+ +|+.+|.+++.-
T Consensus 95 ~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggph 132 (306)
T PLN02606 95 EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPH 132 (306)
T ss_pred CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCCc
Confidence 468999999999999999999876 599999998654
No 167
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.27 E-value=0.00023 Score=47.14 Aligned_cols=57 Identities=28% Similarity=0.279 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q psy11077 35 AQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 35 ~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~ 92 (97)
..|+.++++.+. ...++.++|.+.|.|+||.+++..+...| ++++++..-|++....
T Consensus 157 ~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~df~ 214 (321)
T COG3458 157 FLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSDFP 214 (321)
T ss_pred hHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccccch
Confidence 345555565555 44568899999999999999999988888 7999999998886544
No 168
>PLN02408 phospholipase A1
Probab=97.27 E-value=0.00064 Score=46.66 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=18.6
Q ss_pred ceEEEEeChhHHHHHHHHHhC
Q psy11077 54 RIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+|++.|||+||++|...+...
T Consensus 201 sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 201 SLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred eEEEeccchHHHHHHHHHHHH
Confidence 699999999999999888753
No 169
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.23 E-value=0.00066 Score=47.83 Aligned_cols=42 Identities=24% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEeccCCCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALSCWLPM 90 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~--~~~~v~~~i~~~~~~~~ 90 (97)
+.+.++|.|+|+|.||.++..++.. .+..++++|+.++....
T Consensus 172 ggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 172 GGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred CCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 4578899999999999998888776 34579999999876543
No 170
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.21 E-value=0.0017 Score=44.34 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccC
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 87 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~ 87 (97)
.+...+++.+.++ +..++.+.|.||||.+|...+...|..+..+-++++.
T Consensus 160 ~E~~~Ll~Wl~~~--G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 160 LESRALLHWLERE--GYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred HHHHHHHHHHHhc--CCCceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 3444444444333 6679999999999999999999999876655555543
No 171
>KOG3101|consensus
Probab=97.16 E-value=5.3e-05 Score=48.53 Aligned_cols=42 Identities=29% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
.++..++.+.||||||.-|+..+++.+.+.+.+-.++|....
T Consensus 137 pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP 178 (283)
T KOG3101|consen 137 PLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNP 178 (283)
T ss_pred cccchhcceeccccCCCceEEEEEcCcccccceeccccccCc
Confidence 346668999999999999999999999988888777776543
No 172
>PLN02934 triacylglycerol lipase
Probab=97.11 E-value=0.00098 Score=47.44 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.4
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+..++++.|||+||++|..++.
T Consensus 319 p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 319 KNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred CCCeEEEeccccHHHHHHHHHH
Confidence 5668999999999999999874
No 173
>KOG2281|consensus
Probab=97.07 E-value=0.00098 Score=48.80 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..+++.++-+.-+.++. .-+|.++|.+-|+|.||.+++..+.++|+-++.+|.-+|...
T Consensus 705 VE~eDQVeglq~Laeq~--gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~ 763 (867)
T KOG2281|consen 705 VEVEDQVEGLQMLAEQT--GFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTD 763 (867)
T ss_pred eeehhhHHHHHHHHHhc--CcccchheeEeccccccHHHHHHhhcCcceeeEEeccCccee
Confidence 45566666666666553 124788999999999999999999999999998888777653
No 174
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=97.06 E-value=0.003 Score=41.98 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.2
Q ss_pred CceEEEEeChhHHHHHHHHHhCCC-cccEEEEeccCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWL 88 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~-~v~~~i~~~~~~ 88 (97)
+-+.++|||+||.++..++.+.++ .|+.+|.+++.-
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 569999999999999999999875 699999998643
No 175
>PLN03037 lipase class 3 family protein; Provisional
Probab=97.04 E-value=0.0013 Score=46.98 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
+..+++.++++.....+ ...++++.|||+||++|...+..
T Consensus 299 QVl~eV~rLv~~Yk~~g-e~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRG-EEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccC-CcceEEEeccCHHHHHHHHHHHH
Confidence 33444555554431101 23479999999999999988854
No 176
>KOG2551|consensus
Probab=97.04 E-value=0.0024 Score=41.01 Aligned_cols=71 Identities=23% Similarity=0.181 Sum_probs=47.3
Q ss_pred CccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC--------CcccEEEE
Q psy11077 12 PSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP--------KKLAGVVA 83 (97)
Q Consensus 12 ~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~--------~~v~~~i~ 83 (97)
+.||...-. .......++...+++.+.+++. + +==.|+|+|+|+.++..++...+ ..++-+|+
T Consensus 72 ~~Wf~~n~~---~~~~~~~~eesl~yl~~~i~en---G---PFDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~ 142 (230)
T KOG2551|consen 72 YGWFSNNEA---SFTEYFGFEESLEYLEDYIKEN---G---PFDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVF 142 (230)
T ss_pred hhhhccccc---ccccccChHHHHHHHHHHHHHh---C---CCccccccchhHHHHHHhhcccccCCcccCCCCeEEEEE
Confidence 556555432 1223456677777777777764 2 11267999999999999988211 14799999
Q ss_pred eccCCCCC
Q psy11077 84 LSCWLPMH 91 (97)
Q Consensus 84 ~~~~~~~~ 91 (97)
++++....
T Consensus 143 ~SGf~~~~ 150 (230)
T KOG2551|consen 143 ISGFKFPS 150 (230)
T ss_pred EecCCCCc
Confidence 99988763
No 177
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0013 Score=48.08 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
.++.++++....+++. ++ ..+++.+.|-|.||++.-..+...|+.++++|+.-|+.+.-
T Consensus 506 NTf~DFIa~a~~Lv~~----g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvl 565 (682)
T COG1770 506 NTFTDFIAAARHLVKE----GYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVL 565 (682)
T ss_pred ccHHHHHHHHHHHHHc----CcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchh
Confidence 4555555444444443 34 55689999999999999999999999999999999987543
No 178
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.97 E-value=0.0021 Score=43.57 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEeccCC
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWL 88 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~--~v~~~i~~~~~~ 88 (97)
+|+..+++.+... ....++..+|+|+||.+.+.|+.+..+ .+.+.+.++..+
T Consensus 132 ~D~~~~l~~l~~~-~~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~ 185 (345)
T COG0429 132 EDIRFFLDWLKAR-FPPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF 185 (345)
T ss_pred hHHHHHHHHHHHh-CCCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH
Confidence 5666666666432 366789999999999666666665432 466666665443
No 179
>PLN02753 triacylglycerol lipase
Probab=96.96 E-value=0.0017 Score=46.40 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.0
Q ss_pred CCceEEEEeChhHHHHHHHHHh
Q psy11077 52 SDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
..+|++.|||+||++|...+..
T Consensus 311 ~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 311 DLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred CceEEEEccCHHHHHHHHHHHH
Confidence 3589999999999999998853
No 180
>PLN02802 triacylglycerol lipase
Probab=96.95 E-value=0.0017 Score=46.20 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=18.9
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy11077 53 DRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+|++.|||+||++|...+...
T Consensus 330 ~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred ceEEEeccchHHHHHHHHHHHH
Confidence 3799999999999999887753
No 181
>PLN02324 triacylglycerol lipase
Probab=96.95 E-value=0.0028 Score=44.25 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.3
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy11077 53 DRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+|.+.|||+||++|+..+..
T Consensus 215 ~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 215 ISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred ceEEEecCcHHHHHHHHHHHH
Confidence 379999999999999988854
No 182
>KOG3975|consensus
Probab=96.87 E-value=0.006 Score=40.14 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEeccCC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWL 88 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~--~~v~~~i~~~~~~ 88 (97)
+..++++.+++=.+|++..+ ....+++++|||-|+.+.+..+.... -.+.+++++-|-.
T Consensus 87 eifsL~~QV~HKlaFik~~~---Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFIKEYV---PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTI 147 (301)
T ss_pred cccchhhHHHHHHHHHHHhC---CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchH
Confidence 55788999998888988762 34568999999999999999987432 2577777665543
No 183
>KOG2624|consensus
Probab=96.87 E-value=0.0012 Score=45.97 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=47.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEeccCCCCC
Q psy11077 29 TGIKR-AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWLPMH 91 (97)
Q Consensus 29 ~~~~~-~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~---~v~~~i~~~~~~~~~ 91 (97)
.++.+ ...||-+.|+.++.. .+.++++.+|||+|+.....++...|+ +|+.+++.+|....+
T Consensus 137 FS~~Em~~yDLPA~IdyIL~~-T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k 202 (403)
T KOG2624|consen 137 FSWHEMGTYDLPAMIDYILEK-TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPK 202 (403)
T ss_pred cchhhhhhcCHHHHHHHHHHh-ccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhc
Confidence 44445 344677777777533 267899999999999999999998875 799999999987443
No 184
>PLN02719 triacylglycerol lipase
Probab=96.78 E-value=0.0029 Score=45.19 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=18.4
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy11077 53 DRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+|.+.|||+||++|...+..
T Consensus 298 ~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred ceEEEecCcHHHHHHHHHHHH
Confidence 379999999999999998754
No 185
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.74 E-value=0.012 Score=40.27 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=32.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEeccCCCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLPMH 91 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~-----~v~~~i~~~~~~~~~ 91 (97)
+..+|.|+|||+|+-+.+..+....+ .|+.++++++..+.+
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~ 263 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSD 263 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCC
Confidence 56689999999999888877776543 489999998766554
No 186
>KOG4840|consensus
Probab=96.74 E-value=0.00075 Score=43.69 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEeccCCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~--~~~~v~~~i~~~~~~~~~ 91 (97)
..++++.++++..+++++...+. ...|.|+|||.|+.=.++|+.. -+..+.+.|+-+|...-+
T Consensus 83 t~slk~D~edl~~l~~Hi~~~~f-St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 83 TFSLKDDVEDLKCLLEHIQLCGF-STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cccccccHHHHHHHHHHhhccCc-ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 35778888889999998864443 3489999999999888888743 345678888888776544
No 187
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.68 E-value=0.014 Score=40.04 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCCCceEEEEeChhHHHHHHHHH----hC------CCcccEEEEeccCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSA--GIPSDRIVIGGFSQGGALALYSAL----TY------PKKLAGVVALSCWLPM 90 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~--~~~~~~i~l~G~S~Gg~ia~~~~~----~~------~~~v~~~i~~~~~~~~ 90 (97)
..+.++.++++.++++..... .....+++|.|.|.||..+-.++. +. +-.++|+++.+|++..
T Consensus 109 ~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 109 VWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp S-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 346788888888888877622 234558999999999965444433 33 2358999999998754
No 188
>PLN02847 triacylglycerol lipase
Probab=96.66 E-value=0.0067 Score=44.16 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
...+.+...+..++.. .+.-+++++|||+||.+|..++..
T Consensus 232 wI~~~i~~~L~kal~~-~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 232 WIAKLSTPCLLKALDE-YPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHHHHHH-CCCCeEEEeccChHHHHHHHHHHH
Confidence 3333444444444322 345689999999999998887665
No 189
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.65 E-value=0.0036 Score=45.23 Aligned_cols=75 Identities=15% Similarity=0.048 Sum_probs=57.4
Q ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 16 DLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
|.+|.+.|....+.-..+.++|=.+.|+.+.++.+...+|..+|.|++|...+.++...|.-.++++-..+....
T Consensus 87 DvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 87 DVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred cccccccCCcccceeccccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 677777775433222224666677777777777778889999999999999999999998889988888877653
No 190
>KOG2182|consensus
Probab=96.65 E-value=0.0037 Score=44.42 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCCC-CceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEV-SAGIPS-DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSF 94 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~-~~~~~~-~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~~~ 94 (97)
-+.++...|+..+|+.+. +-+... .+.+.+|-|.-|.+++++-.++|+.+-|.|..++....+-++
T Consensus 146 LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A~~DF 213 (514)
T KOG2182|consen 146 LSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLAKVDF 213 (514)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeEEecH
Confidence 567778889999999886 333433 389999999999999999999999999999888766554433
No 191
>KOG4569|consensus
Probab=96.54 E-value=0.0055 Score=41.70 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=20.1
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
+.-++.+.|||+||++|...+..
T Consensus 169 ~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 169 PNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred CCcEEEEecCChHHHHHHHHHHH
Confidence 56689999999999999888775
No 192
>PLN02761 lipase class 3 family protein
Probab=96.52 E-value=0.0077 Score=43.18 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=18.2
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy11077 53 DRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+|++.|||+||++|...+..
T Consensus 294 ~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred ceEEEeccchHHHHHHHHHHH
Confidence 379999999999999988753
No 193
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.49 E-value=0.0042 Score=40.49 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=38.4
Q ss_pred cccccCCCCCCcc----cHHHHHHHHH-HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh
Q psy11077 14 WFDLISLDVNAKE----DETGIKRAAQ-KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 14 w~d~~g~~~~~~~----~~~~~~~~~~-~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
-||++|.+.|... ...++.++.. |+...+..+.+ .....+.+++|||+||.+...+..+
T Consensus 62 t~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~-~~~~~P~y~vgHS~GGqa~gL~~~~ 125 (281)
T COG4757 62 TFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKK-ALPGHPLYFVGHSFGGQALGLLGQH 125 (281)
T ss_pred EEecccccCCCccccccCccchhhhhhcchHHHHHHHHh-hCCCCceEEeeccccceeecccccC
Confidence 5689998877532 3456666554 45555655532 1245689999999999877665443
No 194
>KOG3043|consensus
Probab=96.46 E-value=0.0012 Score=42.48 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~~~ 93 (97)
.+...+++..+++.+...+ +...|.++|++|||.++..+....+ .+.+.+++-|.+.-..+
T Consensus 99 ~~~~~~~i~~v~k~lk~~g-~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~d~~D 159 (242)
T KOG3043|consen 99 PPKIWKDITAVVKWLKNHG-DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFVDSAD 159 (242)
T ss_pred cccchhHHHHHHHHHHHcC-CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcCChhH
Confidence 3344556777777765333 5789999999999999999999988 68888888777655443
No 195
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=96.28 E-value=0.014 Score=38.96 Aligned_cols=39 Identities=36% Similarity=0.490 Sum_probs=27.6
Q ss_pred CCceEEEEeChhHHHHHHHHHhC----CC-c--ccEEEEeccCCCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTY----PK-K--LAGVVALSCWLPM 90 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~----~~-~--v~~~i~~~~~~~~ 90 (97)
..++.++|||+||.-+...+... |+ . +.+.+..++..++
T Consensus 70 ~~~v~l~GySqGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~dl 115 (290)
T PF03583_consen 70 SSRVALWGYSQGGQAALWAAELAPSYAPELNRDLVGAAAGGPPADL 115 (290)
T ss_pred CCCEEEEeeCccHHHHHHHHHHhHHhCcccccceeEEeccCCccCH
Confidence 45899999999998887766543 33 3 6677766665543
No 196
>KOG3847|consensus
Probab=96.18 E-value=0.0024 Score=43.27 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC-CCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL-PMHK 92 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~-~~~~ 92 (97)
+..++.++|||.||+.++.....+.+ ++..|+...|+ |+.+
T Consensus 239 ~~s~~aViGHSFGgAT~i~~ss~~t~-FrcaI~lD~WM~Pl~~ 280 (399)
T KOG3847|consen 239 DTSQAAVIGHSFGGATSIASSSSHTD-FRCAIALDAWMFPLDQ 280 (399)
T ss_pred hhhhhhheeccccchhhhhhhccccc-eeeeeeeeeeecccch
Confidence 44568999999999999988877664 77777776654 5544
No 197
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.11 E-value=0.017 Score=40.79 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=29.2
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEeccCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWL 88 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~--~~~v~~~i~~~~~~ 88 (97)
|.++|.|+|||.||..+...+..- ..++.++|+.|+..
T Consensus 206 Dp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 206 DPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred CCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 677999999999997777666652 35899999999843
No 198
>COG3150 Predicted esterase [General function prediction only]
Probab=96.06 E-value=0.017 Score=35.92 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 26 EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 26 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
.-..+..+..+.++.++... ..++..|+|-|.||+-|.++..++. ++. |+++|..
T Consensus 37 ~l~h~p~~a~~ele~~i~~~-----~~~~p~ivGssLGGY~At~l~~~~G--ira-v~~NPav 91 (191)
T COG3150 37 HLPHDPQQALKELEKAVQEL-----GDESPLIVGSSLGGYYATWLGFLCG--IRA-VVFNPAV 91 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHc-----CCCCceEEeecchHHHHHHHHHHhC--Chh-hhcCCCc
Confidence 34466777788888888876 5566999999999999999999876 333 3444443
No 199
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.99 E-value=0.024 Score=40.39 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=36.2
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
..+.-++.|.|.||--++..++++|+-++|+|.-+|....
T Consensus 113 ~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 113 APKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred CCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 4567899999999999999999999999999999988754
No 200
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=95.97 E-value=0.012 Score=41.81 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEeccCCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALSCWLP 89 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~--~~~~v~~~i~~~~~~~ 89 (97)
+=|.++|.|+|+|.|++.++.++.- ....+.++|+.|+...
T Consensus 176 GGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 176 GGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred CCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 4478899999999999887777553 2347888888888775
No 201
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.87 E-value=0.068 Score=37.37 Aligned_cols=37 Identities=30% Similarity=0.250 Sum_probs=32.9
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
-+++.+|+|.||.+|...+.--|..++++|=-+++..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 4899999999999999999999999999987776654
No 202
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.70 E-value=0.084 Score=34.65 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=25.5
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 54 RIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
+++=+|||+|+-+-+.+...++..-++.|+++
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred CeeeeecccchHHHHHHhhhccCcccceEEEe
Confidence 67889999999988888887765556666665
No 203
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.67 E-value=0.056 Score=34.91 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
..+..+-++.+.+.+..... ..++++++|+|||+.++...+.+.
T Consensus 26 ~~Sv~~G~~~L~~ai~~~~~---~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 26 DESVAEGVANLDAAIRAAIA---AGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred chHHHHHHHHHHHHHHhhcc---CCCCEEEEEECHHHHHHHHHHHHH
Confidence 45666666667776665411 456899999999999999988874
No 204
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=95.65 E-value=0.029 Score=37.82 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+...++.+.|||.||++|..+..++.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 273 YPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CCCceEEEeccccchHHHHHhccccC
Confidence 56779999999999999999988875
No 205
>KOG4540|consensus
Probab=95.65 E-value=0.029 Score=37.82 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+...++.+.|||.||++|..+..++.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 273 YPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CCCceEEEeccccchHHHHHhccccC
Confidence 56779999999999999999988875
No 206
>KOG2237|consensus
Probab=95.48 E-value=0.02 Score=42.07 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 37 KIHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 37 ~l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
|+..-.+.|.+.++ ..++..+.|.|.||.++...+-++|+++.++|+--|++..-
T Consensus 532 Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL 587 (712)
T KOG2237|consen 532 DFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVL 587 (712)
T ss_pred HHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehh
Confidence 33333444444444 55689999999999999999999999999999988887653
No 207
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.026 Score=39.50 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+++-++..+|+.++++.. ..+++..++.|+|+|+|+-+.=....+.|
T Consensus 302 ~rtPe~~a~Dl~r~i~~y-~~~w~~~~~~liGySfGADvlP~~~n~L~ 348 (456)
T COG3946 302 ERTPEQIAADLSRLIRFY-ARRWGAKRVLLIGYSFGADVLPFAYNRLP 348 (456)
T ss_pred cCCHHHHHHHHHHHHHHH-HHhhCcceEEEEeecccchhhHHHHHhCC
Confidence 467788999999999887 55578899999999999966555545544
No 208
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.27 E-value=0.039 Score=39.41 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 32 KRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
+++-+.+.+.|++.+ ..+.+.+.++|-|-|||..-|+.|+++.. +.++|+.-|...
T Consensus 335 ~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~N 391 (511)
T TIGR03712 335 DEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccc
Confidence 334445555555444 44888889999999999999999998865 456666556554
No 209
>KOG2541|consensus
Probab=95.23 E-value=0.1 Score=34.76 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCC-cccEEEEeccC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCW 87 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~~-~v~~~i~~~~~ 87 (97)
.+-++++|.|+||.++..++..-++ +++.+|.+++.
T Consensus 91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 3468999999999999999987554 68888888754
No 210
>KOG3967|consensus
Probab=95.12 E-value=0.12 Score=33.58 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEeccC
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCW 87 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~--~v~~~i~~~~~ 87 (97)
++...+...+.. ....+.++++.||.||...+.++.++|+ +|.++.+-...
T Consensus 174 eh~~yvw~~~v~-pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 174 EHAKYVWKNIVL-PAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHHHHHHHHhc-ccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 334444444421 1267899999999999999999999884 56666555443
No 211
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=95.06 E-value=0.0036 Score=45.44 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 31 IKRAAQKIHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
-++..+|+..+.+.+.++++ ..+++.+.|-|.||.+.-..+.++|+.+.++++--|.+++.
T Consensus 477 rq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMl 538 (648)
T COG1505 477 KQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDML 538 (648)
T ss_pred chhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhh
Confidence 34455666677777665556 55689999999999999999999999999999998888764
No 212
>KOG1283|consensus
Probab=94.77 E-value=0.083 Score=36.18 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=54.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHH--HhCCCCCceEEEEeChhHHHHHHHHHhCC---------CcccEEEEeccCCCCCCC
Q psy11077 25 KEDETGIKRAAQKIHSIIDKEV--SAGIPSDRIVIGGFSQGGALALYSALTYP---------KKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~---------~~v~~~i~~~~~~~~~~~ 93 (97)
....++.++++.|+..+++.+. ...+...+.+|+-.|.||-++..++.... ..+.++++-.+|++..+.
T Consensus 92 ~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~ 171 (414)
T KOG1283|consen 92 SAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDF 171 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhHh
Confidence 3456788999999999999877 44456678999999999999988877642 357888888888877665
Q ss_pred C
Q psy11077 94 F 94 (97)
Q Consensus 94 ~ 94 (97)
+
T Consensus 172 V 172 (414)
T KOG1283|consen 172 V 172 (414)
T ss_pred h
Confidence 4
No 213
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.46 E-value=0.034 Score=30.02 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=23.9
Q ss_pred ccccCCCCCC--cccHHHHHHHHHHHHHHHH
Q psy11077 15 FDLISLDVNA--KEDETGIKRAAQKIHSIID 43 (97)
Q Consensus 15 ~d~~g~~~~~--~~~~~~~~~~~~~l~~~i~ 43 (97)
+|++|+|.|. .....+++++++|+..+++
T Consensus 49 ~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 49 YDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred ECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 4999999986 4466899999999998874
No 214
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=94.36 E-value=0.16 Score=32.63 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec-cCCCCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS-CWLPMHK 92 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~-~~~~~~~ 92 (97)
..++|.|+++|||-.+|..++...+ ++..|.++ ..+|..+
T Consensus 55 ~y~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAINGT~~Pid~ 95 (213)
T PF04301_consen 55 GYREIYLVAWSMGVWAANRVLQGIP--FKRAIAINGTPYPIDD 95 (213)
T ss_pred cCceEEEEEEeHHHHHHHHHhccCC--cceeEEEECCCCCcCC
Confidence 4679999999999999988876554 55666665 5555554
No 215
>KOG2565|consensus
Probab=94.23 E-value=0.13 Score=35.92 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=46.9
Q ss_pred cccCCCCCCcccHHHHH--HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 16 DLISLDVNAKEDETGIK--RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 16 d~~g~~~~~~~~~~~~~--~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
.++|+|.|+....+.+. +.+.-+..+.-++ +.++.++=|-.||..|+..++..+|+.|.|+=+-.
T Consensus 195 SlPGygwSd~~sk~GFn~~a~ArvmrkLMlRL-----g~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 195 SLPGYGWSDAPSKTGFNAAATARVMRKLMLRL-----GYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred CCCCcccCcCCccCCccHHHHHHHHHHHHHHh-----CcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 45677766554443333 3344455555555 78999999999999999999999999988765443
No 216
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=94.23 E-value=0.23 Score=33.61 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH--HhCCCCCceEEEEeChhHHHHHHHHH----hCC------CcccEEEEeccCCCCCC
Q psy11077 36 QKIHSIIDKEV--SAGIPSDRIVIGGFSQGGALALYSAL----TYP------KKLAGVVALSCWLPMHK 92 (97)
Q Consensus 36 ~~l~~~i~~~~--~~~~~~~~i~l~G~S~Gg~ia~~~~~----~~~------~~v~~~i~~~~~~~~~~ 92 (97)
+++..+++... .......+.+|.|.|.||..+=.++. ... -.++|+++-+|+.....
T Consensus 32 ~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~t~~~~ 100 (319)
T PLN02213 32 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDF 100 (319)
T ss_pred HHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCCCCccc
Confidence 44555554443 22235678999999999954433333 221 25889999999886643
No 217
>KOG2029|consensus
Probab=93.77 E-value=0.23 Score=36.58 Aligned_cols=50 Identities=32% Similarity=0.445 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCC-CCceEEEEeChhHHHHHHHHHhC-----C------CcccEEEEecc
Q psy11077 37 KIHSIIDKEVSAGIP-SDRIVIGGFSQGGALALYSALTY-----P------KKLAGVVALSC 86 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~-~~~i~l~G~S~Gg~ia~~~~~~~-----~------~~v~~~i~~~~ 86 (97)
...++++.+...+++ ..++..+||||||.++-.++..- | ....|+|+.+.
T Consensus 509 Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~ 570 (697)
T KOG2029|consen 509 RSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSV 570 (697)
T ss_pred HHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEec
Confidence 334555555444565 66899999999998776665542 2 13567777763
No 218
>KOG3253|consensus
Probab=93.47 E-value=0.063 Score=39.54 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HhCCCCCceEEEEeChhHHHHHHHHHhCC-CcccEEEEeccC
Q psy11077 29 TGIKRAAQKIHSIIDKEV---SAGIPSDRIVIGGFSQGGALALYSALTYP-KKLAGVVALSCW 87 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~---~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~-~~v~~~i~~~~~ 87 (97)
..+.+.++++..+..... ...+....|+|+|+|||+.+++....-+. ..|+++|+++=.
T Consensus 223 ~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigyp 285 (784)
T KOG3253|consen 223 ANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYP 285 (784)
T ss_pred cchHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccc
Confidence 344555555555554222 34457778999999999888777765443 358999988733
No 219
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=93.40 E-value=0.13 Score=35.63 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=22.2
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+.+..+|.++|||.||..++..+.-+.
T Consensus 155 ~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 155 RLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred ccCccceEEEecccccHHHHHhccccc
Confidence 447789999999999999998876543
No 220
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.64 E-value=0.83 Score=30.70 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=28.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHh---CCCcccEEEEeccCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT---YPKKLAGVVALSCWLP 89 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~---~~~~v~~~i~~~~~~~ 89 (97)
...+++|.|.|+|+.-+...... .-+.++|.+..+|...
T Consensus 107 ~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 107 RRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred cCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 44579999999999766655443 3357999999987654
No 221
>PLN02209 serine carboxypeptidase
Probab=90.56 E-value=2.4 Score=30.18 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHh--CCCCCceEEEEeChhHHHHHHHH----HhC------CCcccEEEEeccCCCCC
Q psy11077 35 AQKIHSIIDKEVSA--GIPSDRIVIGGFSQGGALALYSA----LTY------PKKLAGVVALSCWLPMH 91 (97)
Q Consensus 35 ~~~l~~~i~~~~~~--~~~~~~i~l~G~S~Gg~ia~~~~----~~~------~~~v~~~i~~~~~~~~~ 91 (97)
++++.++++...+. .....+++|.|.|.||.-+-.++ ... +-.++|+++.+|+....
T Consensus 147 a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 147 VKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIE 215 (437)
T ss_pred HHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccChh
Confidence 45566666554422 22445899999999995333333 222 12578999999987654
No 222
>KOG2385|consensus
Probab=90.31 E-value=2 Score=31.48 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC-----CCcccEEEEeccCCCCCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY-----PKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~-----~~~v~~~i~~~~~~~~~~ 92 (97)
+..+|.|+|||.|+-+...-+... -..|..+++++...+++.
T Consensus 445 G~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k~ 491 (633)
T KOG2385|consen 445 GNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTKA 491 (633)
T ss_pred CCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCCH
Confidence 668999999999997766444422 246899999998777653
No 223
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=90.27 E-value=1.7 Score=27.83 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CceEEEEeChhHHHHHHHHHh---------CC-CcccEEEEeccCCC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPS-DRIVIGGFSQGGALALYSALT---------YP-KKLAGVVALSCWLP 89 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~-~~i~l~G~S~Gg~ia~~~~~~---------~~-~~v~~~i~~~~~~~ 89 (97)
.+...++.+.+.+... .... .++++-.+|.||...+..+.. .. ++++++|+-|+...
T Consensus 46 ~~~~~~~~l~~~l~~~---~~~~~~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~ 113 (240)
T PF05705_consen 46 RLAPAADKLLELLSDS---QSASPPPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGI 113 (240)
T ss_pred chHHHHHHHHHHhhhh---ccCCCCCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCc
Confidence 3444444444444443 1122 389999999988776666552 11 24899999986643
No 224
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=90.12 E-value=1.1 Score=31.76 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH--hCCCCCceEEEEeChhHHHHHHHHH----hC------CCcccEEEEeccCCCCC
Q psy11077 36 QKIHSIIDKEVS--AGIPSDRIVIGGFSQGGALALYSAL----TY------PKKLAGVVALSCWLPMH 91 (97)
Q Consensus 36 ~~l~~~i~~~~~--~~~~~~~i~l~G~S~Gg~ia~~~~~----~~------~~~v~~~i~~~~~~~~~ 91 (97)
+++..+++.... ......+++|.|.|.||..+-.++. .. +-.++|+++-+|+....
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 445555554431 1224568999999999964433333 22 12588999999987554
No 225
>KOG1516|consensus
Probab=89.67 E-value=1.1 Score=32.28 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEeccCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALSCWL 88 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~--~~~~v~~~i~~~~~~ 88 (97)
+.++|.++|||.||+.+-.++.. ....+.++|.+++..
T Consensus 193 dp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 193 DPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 77899999999999888766553 224677777776543
No 226
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=89.18 E-value=0.41 Score=34.45 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCC---cccEEEEeccCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWL 88 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~~---~v~~~i~~~~~~ 88 (97)
..+.+|+|.|.||.-+..++....+ ..++++.+++.+
T Consensus 197 ~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvl 236 (498)
T COG2939 197 LSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVL 236 (498)
T ss_pred cCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeee
Confidence 3589999999999666555554322 356666655543
No 227
>KOG1551|consensus
Probab=88.86 E-value=0.67 Score=31.23 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
+..+..++|-||||.+|-.....++..|.-+=+.
T Consensus 193 g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l 226 (371)
T KOG1551|consen 193 GLGNLNLVGRSMGGDIANQVGSLHQKPVATAPCL 226 (371)
T ss_pred CcccceeeeeecccHHHHhhcccCCCCccccccc
Confidence 5678999999999999999999888765544333
No 228
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=88.28 E-value=1.6 Score=29.02 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=20.0
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
...+|+++|+|-|+++|-.++..-
T Consensus 90 ~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 90 PGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred CcceEEEEecCccHHHHHHHHHHH
Confidence 455799999999999999888653
No 229
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=87.81 E-value=2.2 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 39 HSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 39 ~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..+++.+.+.++..+.-.+.|-|.|+.++..++...+
T Consensus 15 ~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 15 LGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 3455555444443335589999999999999998765
No 230
>KOG1202|consensus
Probab=87.64 E-value=2 Score=34.87 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEeccC
Q psy11077 27 DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCW 87 (97)
Q Consensus 27 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~--~~v~~~i~~~~~ 87 (97)
...+++..+.+..+-++++ . ...+..++|+|+|+.++..++.... +....+|++.+.
T Consensus 2160 P~dSies~A~~yirqirkv---Q-P~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGs 2218 (2376)
T KOG1202|consen 2160 PLDSIESLAAYYIRQIRKV---Q-PEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGS 2218 (2376)
T ss_pred CcchHHHHHHHHHHHHHhc---C-CCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCc
Confidence 3467777777766666665 1 4568999999999999999988653 346668887654
No 231
>PF03283 PAE: Pectinacetylesterase
Probab=86.72 E-value=1.9 Score=29.86 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCC-CCCceEEEEeChhHHHHHHHHHh
Q psy11077 38 IHSIIDKEVSAGI-PSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 38 l~~~i~~~~~~~~-~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
++.+++.+...+. +.++++|.|.|.||.-++..+..
T Consensus 140 ~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~ 176 (361)
T PF03283_consen 140 LRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADY 176 (361)
T ss_pred HHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHH
Confidence 3344444442222 56789999999999887776554
No 232
>KOG1282|consensus
Probab=85.70 E-value=8.8 Score=27.65 Aligned_cols=63 Identities=19% Similarity=0.054 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhH----HHHHHHHHhCC------CcccEEEEeccCCCCCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGG----ALALYSALTYP------KKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg----~ia~~~~~~~~------~~v~~~i~~~~~~~~~~~ 93 (97)
...++....|.+++++. ..+...+.+|.|.|.+| .+|......+. -.++|+++-+|......+
T Consensus 146 ~~A~d~~~FL~~wf~kf--Pey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~ 218 (454)
T KOG1282|consen 146 GTAKDNYEFLQKWFEKF--PEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEID 218 (454)
T ss_pred HHHHHHHHHHHHHHHhC--hhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCcccc
Confidence 34444444444444432 23466789999999999 55555555542 258999999998876644
No 233
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=83.36 E-value=9.3 Score=25.63 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCCC
Q psy11077 26 EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90 (97)
Q Consensus 26 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~ 90 (97)
-.+.++..-.+++..+++.+... +.+++.|+.-|..|-||+..+.+- .+.-+|..-+...+
T Consensus 76 I~eftms~g~~sL~~V~dwl~~~--g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVnl 136 (294)
T PF02273_consen 76 INEFTMSIGKASLLTVIDWLATR--GIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVNL 136 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHHT--T---EEEEEETTHHHHHHHHTTTS----SEEEEES--S-H
T ss_pred hhhcchHHhHHHHHHHHHHHHhc--CCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeeeH
Confidence 35678888888888888888533 668899999999999999999854 47888877766544
No 234
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=82.74 E-value=3.7 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=20.3
Q ss_pred CCceEEEEeChhHHHHHHHHHhCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
...-.+.|-|+|+.++..++...+
T Consensus 25 i~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 25 PLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred CCCCEEEEECHHHHHHHHHHcCCC
Confidence 346689999999999999998754
No 235
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=81.81 E-value=2.4 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCc
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK 77 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~ 77 (97)
.+++.+.+.++ ..-++.|-|.|+.+++.++.+.++.
T Consensus 90 GVLkaL~E~gl--~p~vIsGTSaGAivAal~as~~~ee 125 (421)
T cd07230 90 GVLKALFEANL--LPRIISGSSAGSIVAAILCTHTDEE 125 (421)
T ss_pred HHHHHHHHcCC--CCCEEEEECHHHHHHHHHHcCCHHH
Confidence 44555544444 3448999999999999999876543
No 236
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=80.90 E-value=3.8 Score=27.73 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=19.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+...=.+.|-|+|+.++..++..+
T Consensus 41 gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 41 GIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred CCCCCEEEEECHHHHHHHHHHcCC
Confidence 334558899999999999999874
No 237
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=80.81 E-value=2.1 Score=27.85 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=12.6
Q ss_pred CCCceEEEEeChhHH
Q psy11077 51 PSDRIVIGGFSQGGA 65 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ 65 (97)
+...|+++|||+|-.
T Consensus 233 ~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEV 247 (270)
T ss_pred CCCEEEEEeCCCchh
Confidence 557899999999973
No 238
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=80.20 E-value=7.1 Score=25.58 Aligned_cols=36 Identities=17% Similarity=-0.062 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+++.+.+.+.....-.+.|-|+|+.++..++...+
T Consensus 17 GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 17 GVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCc
Confidence 444444433322222249999999999999988755
No 239
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=80.05 E-value=7.1 Score=25.44 Aligned_cols=37 Identities=14% Similarity=-0.025 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCCc--eEEEEeChhHHHHHHHHHhCC
Q psy11077 39 HSIIDKEVSAGIPSDR--IVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 39 ~~~i~~~~~~~~~~~~--i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..+++.+.+.++.... -.+.|-|.|+.++..++...+
T Consensus 15 ~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 15 VGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 3455555444432212 389999999999999998764
No 240
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=79.86 E-value=4.6 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.4
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..=.+.|-|.||.+++.++....
T Consensus 27 ~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 27 LKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred CcceEEEECHHHHHHHHHHcCCC
Confidence 44689999999999999998654
No 241
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=79.79 E-value=3.8 Score=27.49 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+.+.-.+.|-|+|+.++..++..+.
T Consensus 37 gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 37 GIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred CCCccEEEecCHHHHHHHHHHcCCC
Confidence 4577799999999999999998654
No 242
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=79.58 E-value=9 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeChhH--HHHHHHHHhCCCcccEEEE
Q psy11077 35 AQKIHSIIDKEVSAGIPSDRIVIGGFSQGG--ALALYSALTYPKKLAGVVA 83 (97)
Q Consensus 35 ~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg--~ia~~~~~~~~~~v~~~i~ 83 (97)
...+.++++.. ...+.+|+|-|-=. -+-..++.++|++|.++.+
T Consensus 52 ~~~i~~i~~~f-----P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 52 RDNIERILRDF-----PERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHHC-----CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 33455555554 77899999998665 5666778889999988754
No 243
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=78.98 E-value=4.8 Score=26.82 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=19.1
Q ss_pred CCceEEEEeChhHHHHHHHHHhC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+-=.+.|-|+|+.++..|+...
T Consensus 37 i~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 37 IPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred CCccEEEEECHHHHHHHHHHcCC
Confidence 34458999999999999998864
No 244
>PRK10279 hypothetical protein; Provisional
Probab=78.60 E-value=4.6 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+++.+.+.+ .+.-.+.|-|+|+.++..|+....
T Consensus 22 GVL~aL~E~g--i~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 22 GVINALKKVG--IEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHHcC--CCcCEEEEEcHHHHHHHHHHcCCh
Confidence 3444443333 455689999999999999997643
No 245
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=78.34 E-value=13 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.006 Sum_probs=18.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEE
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVA 83 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~ 83 (97)
..++|.++|-|..|.+.+.++...++.+..++=
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD 99 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVD 99 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEE
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEe
Confidence 447899999999999988888776666665553
No 246
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=77.51 E-value=6.5 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=19.2
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+.-.+.|-|.|+.++..++...+
T Consensus 28 ~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 28 EPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred CceEEEEeCHHHHHHHHHHcCCC
Confidence 44579999999999999997653
No 247
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=76.70 E-value=18 Score=25.04 Aligned_cols=60 Identities=8% Similarity=0.027 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHH-----HHHHHHHhCCCcccEEEEeccCCCCCCC
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGA-----LALYSALTYPKKLAGVVALSCWLPMHKS 93 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~-----ia~~~~~~~~~~v~~~i~~~~~~~~~~~ 93 (97)
..+++++++++.+++..+ + .+.++++-++=+. +++......|.....++++++.+..+.+
T Consensus 150 ~FdldDYIdyvie~~~~~-----G-p~~hv~aVCQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR~n 214 (415)
T COG4553 150 HFDLDDYIDYVIEMINFL-----G-PDAHVMAVCQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDARKN 214 (415)
T ss_pred CccHHHHHHHHHHHHHHh-----C-CCCcEEEEecCCchHHHHHHHHHhcCCCCCCceeeeecCccccccC
Confidence 478999999999999997 3 3477777788763 2222223356678999999988876543
No 248
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=76.62 E-value=4.8 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.142 Sum_probs=17.5
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+.++-.++|||+|=..|+..+.
T Consensus 80 Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 80 GVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred CCcccEEEecCHHHHHHHHHhC
Confidence 5567799999999988876653
No 249
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=76.37 E-value=8.4 Score=26.84 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
..++|+++|+|-|+.++-.++.
T Consensus 120 pGD~Iy~FGFSRGAf~aRVlag 141 (423)
T COG3673 120 PGDEIYAFGFSRGAFSARVLAG 141 (423)
T ss_pred CCCeEEEeeccchhHHHHHHHH
Confidence 4568999999999998877664
No 250
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=76.29 E-value=5.1 Score=26.53 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.6
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+.++..++|||+|=..|+..+.
T Consensus 74 g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 74 LPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred CCCCcEEeecCHHHHHHHHHhC
Confidence 4578899999999987776653
No 251
>KOG4372|consensus
Probab=75.66 E-value=1.1 Score=31.58 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.1
Q ss_pred CCceEEEEeChhHHHHHHHHHh
Q psy11077 52 SDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
.+++-++|||.||.++..+...
T Consensus 149 i~kISfvghSLGGLvar~AIgy 170 (405)
T KOG4372|consen 149 IEKISFVGHSLGGLVARYAIGY 170 (405)
T ss_pred cceeeeeeeecCCeeeeEEEEe
Confidence 5789999999999887766554
No 252
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=75.49 E-value=8.5 Score=25.16 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=18.9
Q ss_pred eEEEEeChhHHHHHHHHHhCCC
Q psy11077 55 IVIGGFSQGGALALYSALTYPK 76 (97)
Q Consensus 55 i~l~G~S~Gg~ia~~~~~~~~~ 76 (97)
=.++|-|.|+.++..++.....
T Consensus 29 d~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 29 DLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred CEEEEECHHHHhHHHHHhCCcc
Confidence 3899999999999999887653
No 253
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=75.03 E-value=3.3 Score=28.05 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=17.5
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q psy11077 56 VIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+.|.|+||.+++.++..++
T Consensus 35 ~i~GTStGgiIA~~la~g~s 54 (312)
T cd07212 35 WIAGTSTGGILALALLHGKS 54 (312)
T ss_pred EEEeeChHHHHHHHHHcCCC
Confidence 78999999999999987543
No 254
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.80 E-value=2.2 Score=26.67 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccEEEEec-cCCCCCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS-CWLPMHK 92 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~-~~~~~~~ 92 (97)
...+.++++|||-.+|-+.+...+ ++..+.++ ..++..+
T Consensus 56 y~hirlvAwSMGVwvAeR~lqg~~--lksatAiNGTgLpcDd 95 (214)
T COG2830 56 YRHIRLVAWSMGVWVAERVLQGIR--LKSATAINGTGLPCDD 95 (214)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhcc--ccceeeecCCCCCccc
Confidence 356889999999999999988776 55555554 4445444
No 255
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=73.20 E-value=11 Score=22.67 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.5
Q ss_pred CceEEEEeChhHHHHHHHH
Q psy11077 53 DRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~ 71 (97)
.--.+.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 4558899999999999887
No 256
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=73.03 E-value=8.6 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=19.8
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.--.+.|.|.|+.+++.++...+
T Consensus 26 ~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 26 EPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred CCCEEEEECHHHHHHHHHHcCCc
Confidence 44589999999999999998775
No 257
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=72.16 E-value=3.2 Score=27.86 Aligned_cols=22 Identities=27% Similarity=0.078 Sum_probs=17.6
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+.++-.++|||+|=..|+..+-
T Consensus 82 Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 82 GIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp THCESEEEESTTHHHHHHHHTT
T ss_pred ccccceeeccchhhHHHHHHCC
Confidence 5678899999999888776654
No 258
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=72.11 E-value=11 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=5.5
Q ss_pred ceEEEEeChh
Q psy11077 54 RIVIGGFSQG 63 (97)
Q Consensus 54 ~i~l~G~S~G 63 (97)
.|.|.||+-.
T Consensus 32 ~i~I~G~td~ 41 (97)
T PF00691_consen 32 QIEIEGHTDS 41 (97)
T ss_dssp EEEEEEEEES
T ss_pred eEEEEEEEcC
Confidence 5555555544
No 259
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=70.78 E-value=7.7 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=16.8
Q ss_pred CCceEEEEeChhHHHHHHHHH
Q psy11077 52 SDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
..+-.++|||+|=..|+..+.
T Consensus 82 i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred CCCCEEeecCHHHHHHHHHhC
Confidence 577899999999987766553
No 260
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=70.19 E-value=12 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=19.4
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.-=.+.|-|.|+.++..++..++
T Consensus 28 ~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 28 EIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred CeeEEEEeCHHHHHHHHHHcCCC
Confidence 44589999999999999988754
No 261
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=69.56 E-value=5.9 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=24.8
Q ss_pred cccCCCCCC----cccHHHHHHHHHHHHHHHHHHH---HhCCCCCceEEEEeChhHH
Q psy11077 16 DLISLDVNA----KEDETGIKRAAQKIHSIIDKEV---SAGIPSDRIVIGGFSQGGA 65 (97)
Q Consensus 16 d~~g~~~~~----~~~~~~~~~~~~~l~~~i~~~~---~~~~~~~~i~l~G~S~Gg~ 65 (97)
-+-|||... .-.-.+.++.+..+..+-+.+. ......++|.|+|.|++..
T Consensus 60 ~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 60 QLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 555666541 1123455555555544444443 2233567999999999987
No 262
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=68.38 E-value=7.3 Score=27.53 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcc
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKL 78 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v 78 (97)
.+++.+.+.+ ...-++.|-|.|+.+++.++.+.++.+
T Consensus 84 GVlkaL~e~g--llp~iI~GtSAGAivaalla~~t~~el 120 (407)
T cd07232 84 GVVKALLDAD--LLPNVISGTSGGSLVAALLCTRTDEEL 120 (407)
T ss_pred HHHHHHHhCC--CCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 4455554443 345579999999999999998655433
No 263
>KOG2214|consensus
Probab=68.36 E-value=2.2 Score=30.99 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEE
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 82 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i 82 (97)
.+++.+.++ +.-+-++.|-|+||.+|..++.+..+.++.+.
T Consensus 191 GVlrtL~e~--dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll 231 (543)
T KOG2214|consen 191 GVLRTLLEQ--DLLPNIISGSSAGAIVASLVGVRSNEELKQLL 231 (543)
T ss_pred HHHHHHHHc--cccchhhcCCchhHHHHHHHhhcchHHHHHHh
Confidence 344444333 45567889999999999999998766555443
No 264
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=68.20 E-value=15 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.9
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..=.+.|-|.|+.++..++....
T Consensus 28 ~~d~i~GtSaGal~a~~~a~g~~ 50 (175)
T cd07205 28 PIDIVSGTSAGAIVGALYAAGYS 50 (175)
T ss_pred CeeEEEEECHHHHHHHHHHcCCC
Confidence 34489999999999999987653
No 265
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=67.79 E-value=8.5 Score=27.18 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCC
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPK 76 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~ 76 (97)
.+++.+.+.+ ..+-++.|-|.|+.++..++.+-++
T Consensus 100 Gv~kaL~e~g--l~p~~i~GtS~Gaivaa~~a~~~~~ 134 (391)
T cd07229 100 GVVKALWLRG--LLPRIITGTATGALIAALVGVHTDE 134 (391)
T ss_pred HHHHHHHHcC--CCCceEEEecHHHHHHHHHHcCCHH
Confidence 4455554443 3455799999999999999986443
No 266
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=67.30 E-value=19 Score=19.87 Aligned_cols=8 Identities=38% Similarity=0.791 Sum_probs=3.9
Q ss_pred ceEEEEeC
Q psy11077 54 RIVIGGFS 61 (97)
Q Consensus 54 ~i~l~G~S 61 (97)
.|.|.||+
T Consensus 33 ~i~I~Ght 40 (104)
T TIGR02802 33 RVTIEGHT 40 (104)
T ss_pred EEEEEEec
Confidence 44455554
No 267
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=67.12 E-value=24 Score=21.91 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEe
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGF 60 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~ 60 (97)
......+.+.++++.. +..+|.|.||
T Consensus 97 ~~~~~L~~~a~~L~~~-----p~~~i~V~GH 122 (190)
T COG2885 97 KAQATLDELAKYLKKN-----PITRILVEGH 122 (190)
T ss_pred hHHHHHHHHHHHHHhC-----CCcEEEEEec
Confidence 4455555555555553 5677777777
No 268
>PRK13690 hypothetical protein; Provisional
Probab=66.80 E-value=20 Score=22.62 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCCCceEEEEeCh
Q psy11077 31 IKRAAQKIHSIIDKEV-SAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~S~ 62 (97)
++++.+++...++.++ ..+....+++++|.|-
T Consensus 3 ~~~i~~~~~~~~~El~~~a~l~~g~i~VvGcST 35 (184)
T PRK13690 3 LEEIKKQTRQILEELLEQANLKPGQIFVLGCST 35 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 3455566666666665 4456777999999985
No 269
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=65.79 E-value=23 Score=23.29 Aligned_cols=21 Identities=24% Similarity=-0.043 Sum_probs=18.2
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy11077 55 IVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 55 i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
-.+.|-|.|+.+++.++...+
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 38 RKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCCC
Confidence 568899999999999988765
No 270
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=65.77 E-value=55 Score=24.78 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEe------ChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGF------SQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~------S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
-.++.+...++.++. ..++|+++|| +.|+++++......-.+ .+.+...
T Consensus 321 vRaRvis~al~d~i~---e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~d 375 (655)
T COG3887 321 VRARVISTALSDIIK---ESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLD 375 (655)
T ss_pred HHHHHHHHHHHHHHh---hcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEEC
Confidence 334444444444432 2479999999 78999988877765544 4455544
No 271
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=65.70 E-value=14 Score=24.16 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=29.9
Q ss_pred CCCCceEEEEeChhHHHHHHHHHh-CC-CcccEEEEeccCCCCCCCC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALT-YP-KKLAGVVALSCWLPMHKSF 94 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~-~~-~~v~~~i~~~~~~~~~~~~ 94 (97)
++.+++.++||.||-.-...|... .. -.|+.+|-+++.-.+++++
T Consensus 53 YKGk~iSvmg~GmGipS~sIY~~ELi~~y~Vk~iIRvGt~Gal~~~v 99 (236)
T COG0813 53 YKGKKISVMGHGMGIPSISIYSRELITDYGVKKIIRVGTCGALSEDV 99 (236)
T ss_pred ecCcEEEEEEecCCCccHHHHHHHHHHHhCcceEEEEEccccccCCc
Confidence 467799999999997444333332 21 1488888887766666543
No 272
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=64.89 E-value=14 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+++.+.+.++ ..-++.|.|.|+.++..++...+
T Consensus 86 Gvl~aL~e~~l--~~~~i~GtSaGAi~aa~~~~~~~ 119 (298)
T cd07206 86 GVVKALWEQDL--LPRVISGSSAGAIVAALLGTHTD 119 (298)
T ss_pred HHHHHHHHcCC--CCCEEEEEcHHHHHHHHHHcCCc
Confidence 34444433333 34579999999999999987543
No 273
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=63.45 E-value=10 Score=26.08 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 40 SIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 40 ~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+++.+.+.++ ..-++.|-|.|+.++..++.+-
T Consensus 85 GVlkaL~e~gl--~p~~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 85 GVVRTLVEHQL--LPRVIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred HHHHHHHHcCC--CCCEEEEECHHHHHHHHHHcCC
Confidence 44444444433 4456999999999999998754
No 274
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=63.45 E-value=8.7 Score=26.50 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.4
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy11077 56 VIGGFSQGGALALYSALT 73 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~ 73 (97)
.+.|.|.||.+|+.++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 889999999999999864
No 275
>PRK02399 hypothetical protein; Provisional
Probab=59.91 E-value=62 Score=23.18 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
++...+.+..++..+.+.+ +..-++-+|-|+|..++...+...|--+-+++..
T Consensus 76 i~~M~~ga~~~v~~L~~~g-~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVS 128 (406)
T PRK02399 76 MAAMAEGAAAFVRELYERG-DVAGVIGLGGSGGTALATPAMRALPIGVPKLMVS 128 (406)
T ss_pred HHHHHHHHHHHHHHHHhcC-CccEEEEecCcchHHHHHHHHHhCCCCCCeEEEE
Confidence 3444555566665554333 4667899999999999999999988666555544
No 276
>KOG1374|consensus
Probab=59.81 E-value=50 Score=23.60 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=37.6
Q ss_pred ccCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCh--------hHHHHHHHHHhCC
Q psy11077 4 TLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQ--------GGALALYSALTYP 75 (97)
Q Consensus 4 ~~~~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~--------Gg~ia~~~~~~~~ 75 (97)
..++|+.+-.|-..+ + .-+...+++.+.|++.... -|.-.-+++=||+ |..+.-.+..++|
T Consensus 94 s~~ggGAGNNWA~GY----~------~G~~~~e~ImdiIdrEad~-~DsleGF~l~hSiAGGTGSGlGS~llErL~dryp 162 (448)
T KOG1374|consen 94 SDHGGGAGNNWASGY----S------QGERVQEDIMDIIDREADG-SDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYP 162 (448)
T ss_pred ecCCCCccccccccc----c------cchhhHHHHHHHHHHhhcC-CCcccceeEEEeecCCCCcchHHHHHHHHHHhch
Confidence 345666666672222 1 1334556677788776422 2222334444554 4455555555555
Q ss_pred CcccEEEEeccCCCCCC
Q psy11077 76 KKLAGVVALSCWLPMHK 92 (97)
Q Consensus 76 ~~v~~~i~~~~~~~~~~ 92 (97)
++++---..+|..+
T Consensus 163 ---kkliqtysVfPn~d 176 (448)
T KOG1374|consen 163 ---KKLVQTYSVFPNQD 176 (448)
T ss_pred ---hhhheeeeeccCCC
Confidence 44444445555543
No 277
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=59.16 E-value=13 Score=22.13 Aligned_cols=24 Identities=38% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
...--.+.|-|.||.+++.++...
T Consensus 25 ~~~~d~i~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 25 GERFDVISGTSAGALNAALLALGY 48 (204)
T ss_dssp CCT-SEEEEECCHHHHHHHHHTC-
T ss_pred CCCccEEEEcChhhhhHHHHHhCC
Confidence 334458999999999998887763
No 278
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=58.82 E-value=12 Score=25.00 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.6
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q psy11077 56 VIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+.|-|.||.+++.++..++
T Consensus 37 ~i~GTSaGaiia~~la~g~~ 56 (288)
T cd07213 37 LFAGTSAGSLIALGLALGYS 56 (288)
T ss_pred EEEEeCHHHHHHHHHHcCcC
Confidence 88999999999999987653
No 279
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=58.76 E-value=33 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCC-CCce-EEEEeChhHHHHHHHHH
Q psy11077 40 SIIDKEVSAGIP-SDRI-VIGGFSQGGALALYSAL 72 (97)
Q Consensus 40 ~~i~~~~~~~~~-~~~i-~l~G~S~Gg~ia~~~~~ 72 (97)
.+++.+.+.++. .+++ .+.|-|+|+.++..++.
T Consensus 16 GVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 16 GAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 444444433332 1233 89999999999999984
No 280
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=58.50 E-value=21 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=17.9
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
+.++.++.|||+|=+.|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 5678899999999888776654
No 281
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=57.98 E-value=9.9 Score=25.49 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.5
Q ss_pred EEEEeChhHHHHHHHHH
Q psy11077 56 VIGGFSQGGALALYSAL 72 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~ 72 (97)
.++|-|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 68999999999999876
No 282
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=57.46 E-value=33 Score=21.24 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeC
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFS 61 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S 61 (97)
......+.+..+++.. +..+|.|.||.
T Consensus 83 ~~~~~L~~~a~~L~~~-----p~~~v~I~Ght 109 (173)
T PRK10802 83 DFAQMLDAHANFLRSN-----PSYKVTVEGHA 109 (173)
T ss_pred HHHHHHHHHHHHHHhC-----CCceEEEEEec
Confidence 3333444455555443 55678888886
No 283
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=57.05 E-value=86 Score=23.95 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=32.2
Q ss_pred ceEEEEeChhHHHHHHHHHhCCC-cccEEEEeccCCCCCC
Q psy11077 54 RIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWLPMHK 92 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~~-~v~~~i~~~~~~~~~~ 92 (97)
-||-.+.|-||.-++..+.+..+ +|++++..-|...+..
T Consensus 286 ~VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~~ 325 (690)
T PF10605_consen 286 LVIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLPP 325 (690)
T ss_pred EEEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCCC
Confidence 36777899999999999988654 8999999988877664
No 284
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=56.36 E-value=72 Score=22.84 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~ 84 (97)
..++...+.+..++..+...+ ...-|+-+|-|+|..++...+...|--+-+++..
T Consensus 72 ~ai~~M~~ga~~~v~~l~~~g-~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVS 126 (403)
T PF06792_consen 72 EAIEAMARGAARFVSDLYDEG-KIDGVIGIGGSGGTALATAAMRALPIGFPKLMVS 126 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CccEEEEecCCccHHHHHHHHHhCCCCCCeEEEE
Confidence 445555566667777664333 4567888999999999999999998666666554
No 285
>PF11181 YflT: Heat induced stress protein YflT
Probab=56.07 E-value=31 Score=19.26 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeCh
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~ 62 (97)
+.+...|+.+...|+..+.|+++.|.-
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 456677777777888999999998754
No 286
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=55.68 E-value=28 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.6
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 50 IPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 50 ~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+.++-.++|||+|=+.++..+--.
T Consensus 262 ~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 262 FAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred cCCCCCEEeecCHHHHHHHHHhCCC
Confidence 4677889999999987777766543
No 287
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=55.04 E-value=29 Score=21.92 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCh----hHHHHHHHHHhCC-CcccEEEE
Q psy11077 28 ETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQ----GGALALYSALTYP-KKLAGVVA 83 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~----Gg~ia~~~~~~~~-~~v~~~i~ 83 (97)
.++.+.+.+.+.+++++. + ..++|+|+|- |..++-.++.+.. ..+..++-
T Consensus 90 ~~~~e~~a~al~~~i~~~-----~-p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~ 144 (202)
T cd01714 90 GADTLATAKALAAAIKKI-----G-VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSK 144 (202)
T ss_pred CCChHHHHHHHHHHHHHh-----C-CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEE
Confidence 345677777777777664 4 5799999988 7788888888764 23444443
No 288
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=53.62 E-value=22 Score=20.28 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhC-CCCC-ceEEEEeChh
Q psy11077 26 EDETGIKRAAQKIHSIIDKEVSAG-IPSD-RIVIGGFSQG 63 (97)
Q Consensus 26 ~~~~~~~~~~~~l~~~i~~~~~~~-~~~~-~i~l~G~S~G 63 (97)
-.++.+..+-.+++.+|..+++.+ +..+ .--+.-+|||
T Consensus 63 LtdYnLRrIGSdLE~~iR~LLq~GeisYNl~~RVlNySMG 102 (108)
T PF10664_consen 63 LTDYNLRRIGSDLEHFIRSLLQAGEISYNLDSRVLNYSMG 102 (108)
T ss_pred chhhhHHHhccHHHHHHHHHHHCCceeeCCCcceeccccC
Confidence 346777788888888888877332 2222 3355667777
No 289
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.76 E-value=57 Score=20.64 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
...+|+++|.+-.+.++..++.+..
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 4579999999999999999998764
No 290
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=51.56 E-value=44 Score=22.02 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=17.3
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEE
Q psy11077 17 LISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGG 59 (97)
Q Consensus 17 ~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G 59 (97)
..||.++........+-..+-...+.+.+...+++.+++.+.|
T Consensus 171 I~GHTD~~Gs~~~N~~LS~~RA~aV~~yLv~~GI~~~RI~~~G 213 (239)
T TIGR03789 171 LSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQA 213 (239)
T ss_pred EEEeCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 3444443333333333333333333333334444444454444
No 291
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=51.52 E-value=50 Score=20.10 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
++.++++.+. ..++|+++|...-+.++..+..+.
T Consensus 19 ~~~~~~~~l~----~a~~I~i~G~G~S~~~A~~~~~~l 52 (179)
T TIGR03127 19 ELDKLADKII----KAKRIFVAGAGRSGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHH----hCCEEEEEecCHHHHHHHHHHHHH
Confidence 4555555552 456899999887777777776654
No 292
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=50.80 E-value=22 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.3
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy11077 55 IVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 55 i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
-.+.|-|.|+.++..++...+
T Consensus 34 ~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 479999999999999988655
No 293
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=49.54 E-value=51 Score=20.11 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+.++++.+. ..++|+++|....+.++..+..+.
T Consensus 22 ~l~~~~~~i~----~a~~I~i~G~G~S~~~A~~~~~~l 55 (179)
T cd05005 22 ELDKLISAIL----NAKRIFVYGAGRSGLVAKAFAMRL 55 (179)
T ss_pred HHHHHHHHHH----hCCeEEEEecChhHHHHHHHHHHH
Confidence 3555555552 447899999877777777776654
No 294
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=48.81 E-value=13 Score=26.66 Aligned_cols=71 Identities=25% Similarity=0.256 Sum_probs=53.0
Q ss_pred cccCCCCCCcc----cHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCC
Q psy11077 16 DLISLDVNAKE----DETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 16 d~~g~~~~~~~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+++-.++|.+. ..-++.+.+.|..++++.+.. +-..+.+-.|-|=||+.++.+=..||+-+++.|..-...
T Consensus 95 EhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~--iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaYVAP~ 169 (448)
T PF05576_consen 95 EHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKP--IYPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAYVAPN 169 (448)
T ss_pred EEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHh--hccCCceecCcCCCceeEEEEeeeCCCCCCeeeeeeccc
Confidence 44555555322 246788899999998888742 234578999999999999999888999999888765443
No 295
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=48.41 E-value=31 Score=19.96 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFS 61 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S 61 (97)
.+..+...-+.++++.+.......+++++++|+
T Consensus 120 Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg 152 (158)
T PF00300_consen 120 ESWEDFQQRVKQFLDELIAYKRPGENVLIVSHG 152 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-H
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecH
Confidence 366777777777777765211256789999774
No 296
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=47.72 E-value=15 Score=24.66 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=15.2
Q ss_pred EEEEeChhHHHHHHHHH
Q psy11077 56 VIGGFSQGGALALYSAL 72 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~ 72 (97)
.++|-|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 88999999999998864
No 297
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=47.54 E-value=40 Score=19.16 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=21.0
Q ss_pred ceEEEE-eChhHHHHHHHHHhCCCcccEEEE
Q psy11077 54 RIVIGG-FSQGGALALYSALTYPKKLAGVVA 83 (97)
Q Consensus 54 ~i~l~G-~S~Gg~ia~~~~~~~~~~v~~~i~ 83 (97)
++.++| ..+.|.-.+.++.+||+ ++-+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~ 30 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVAL 30 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEe
Confidence 467888 88888888888888884 443333
No 298
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=46.70 E-value=78 Score=20.43 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=7.3
Q ss_pred CCCceEEEEeCh
Q psy11077 51 PSDRIVIGGFSQ 62 (97)
Q Consensus 51 ~~~~i~l~G~S~ 62 (97)
+..+|.|.||.-
T Consensus 142 p~~~I~I~GhTD 153 (219)
T PRK10510 142 PKTAVNVVGYTD 153 (219)
T ss_pred CCceEEEEEecC
Confidence 445677777743
No 299
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=45.85 E-value=19 Score=23.38 Aligned_cols=18 Identities=50% Similarity=0.624 Sum_probs=16.6
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy11077 56 VIGGFSQGGALALYSALT 73 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~ 73 (97)
.++|-|.||.+++.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 789999999999999886
No 300
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=45.75 E-value=27 Score=22.33 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=19.9
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcc---cEEEE
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYPKKL---AGVVA 83 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~~~v---~~~i~ 83 (97)
.+-+++.| |||.+....+...++.. ..+|+
T Consensus 67 ~d~ivIAG--MGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 67 VDTIVIAG--MGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp --EEEEEE--E-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred CCEEEEec--CCHHHHHHHHHhhHHHhccCCeEEE
Confidence 34577776 99999999999887653 44444
No 301
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.41 E-value=62 Score=23.04 Aligned_cols=33 Identities=3% Similarity=0.047 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
++.+++..+ ..+++.++|....|.-++.++.+.
T Consensus 4 ~~~~~~~~~-----~~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 4 DFNEFKKFI-----KNKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred hHHHHhhhh-----cCCeEEEEcccHHHHHHHHHHHHC
Confidence 556677766 456899999999998777776654
No 302
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=43.32 E-value=20 Score=24.75 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.4
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy11077 56 VIGGFSQGGALALYSALT 73 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~ 73 (97)
.+.|-|.||.+|+.++..
T Consensus 46 liaGTStGgiiA~~la~~ 63 (349)
T cd07214 46 VIAGTSTGGLITAMLTAP 63 (349)
T ss_pred EEeeCCHHHHHHHHHhcC
Confidence 789999999999999874
No 303
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.12 E-value=14 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.8
Q ss_pred EEEEeChhHHHHHHHHHhCCCcccE
Q psy11077 56 VIGGFSQGGALALYSALTYPKKLAG 80 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~~~~~~v~~ 80 (97)
.++|-|+|+.-...|+++.+.+-.+
T Consensus 43 ~~~GvSAGA~n~~aYls~Q~gra~~ 67 (292)
T COG4667 43 LVVGVSAGALNLVAYLSKQRGRARR 67 (292)
T ss_pred eeeeecHhHHhHHHHhhcCCchHHH
Confidence 6789999999999999998865443
No 304
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=42.92 E-value=17 Score=21.73 Aligned_cols=14 Identities=36% Similarity=0.202 Sum_probs=11.8
Q ss_pred eEEEEeChhHHHHH
Q psy11077 55 IVIGGFSQGGALAL 68 (97)
Q Consensus 55 i~l~G~S~Gg~ia~ 68 (97)
..++|.|.|+++..
T Consensus 70 ~vi~G~SAGA~i~~ 83 (154)
T PF03575_consen 70 GVIIGTSAGAMILG 83 (154)
T ss_dssp SEEEEETHHHHCTS
T ss_pred CEEEEEChHHhhcc
Confidence 68899999998853
No 305
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.80 E-value=84 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.011 Sum_probs=20.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..++|+++|.+-.+.+|..++.+..
T Consensus 42 ~a~~I~i~G~G~S~~~A~~~~~~l~ 66 (197)
T PRK13936 42 NEGKILACGNGGSAADAQHFSAELL 66 (197)
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHcc
Confidence 5679999998888888888887654
No 306
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=42.73 E-value=32 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.7
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy11077 54 RIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+|+|+|-+.+|.+++.++.++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G 24 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG 24 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT
T ss_pred eEEEECCCHHHHHHHHHHHhcc
Confidence 6899999999999999988875
No 307
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=42.65 E-value=22 Score=24.18 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred EEEEeChhHHHHHHHHH
Q psy11077 56 VIGGFSQGGALALYSAL 72 (97)
Q Consensus 56 ~l~G~S~Gg~ia~~~~~ 72 (97)
.+.|-|.||.+|+.++.
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 78999999999988653
No 308
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=42.17 E-value=24 Score=24.06 Aligned_cols=18 Identities=39% Similarity=0.206 Sum_probs=13.9
Q ss_pred eEEEEeChhHHHHHHHHH
Q psy11077 55 IVIGGFSQGGALALYSAL 72 (97)
Q Consensus 55 i~l~G~S~Gg~ia~~~~~ 72 (97)
-.++|||+|=..|+..+.
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 368999999877776653
No 309
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=41.92 E-value=34 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
...+++|+|||=||.+.-.++.+.
T Consensus 191 ~~~~~~LiGFSKGcvVLNqll~El 214 (303)
T PF10561_consen 191 SKPPLTLIGFSKGCVVLNQLLYEL 214 (303)
T ss_pred cCCceEEEEecCcchHHHHHHHHH
Confidence 345799999999998877766653
No 310
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=41.80 E-value=26 Score=26.93 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=16.4
Q ss_pred ceEEEEeChhHHHHHHHHH
Q psy11077 54 RIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~ 72 (97)
-=++.|.|+||.++..++.
T Consensus 67 ~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 67 VDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CceEEeeCHHHHHHHHHHc
Confidence 3489999999999988886
No 311
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=41.77 E-value=93 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.8
Q ss_pred eEEEEeChhHHHHHHHHHh
Q psy11077 55 IVIGGFSQGGALALYSALT 73 (97)
Q Consensus 55 i~l~G~S~Gg~ia~~~~~~ 73 (97)
-.+.|-|.|+.+++.++..
T Consensus 46 d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 46 HRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred CeEEEEcHHHHHHHHHHhC
Confidence 3689999999999999876
No 312
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=41.44 E-value=77 Score=20.77 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=19.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..++|+++|......++..+..+.-
T Consensus 127 ~a~~I~i~G~G~s~~~A~~~~~~l~ 151 (278)
T PRK11557 127 SARRIILTGIGASGLVAQNFAWKLM 151 (278)
T ss_pred cCCeEEEEecChhHHHHHHHHHHHh
Confidence 5678999999888888888776643
No 313
>PF15566 Imm18: Immunity protein 18
Probab=40.96 E-value=39 Score=16.80 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=13.0
Q ss_pred CCCceEEEEeChhHH
Q psy11077 51 PSDRIVIGGFSQGGA 65 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ 65 (97)
+.+.++++--||||.
T Consensus 19 ~~~H~Hlmtp~WgG~ 33 (52)
T PF15566_consen 19 PFDHEHLMTPDWGGE 33 (52)
T ss_pred CCCCceecccccccc
Confidence 578899999999995
No 314
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=40.78 E-value=43 Score=20.88 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
.-++-.+..+ +.+.|+++|||-=|++...+
T Consensus 69 asleyAv~~L-----~v~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 69 SVLQYAVDVL-----KVKHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred hhHHHHHHhc-----CCCEEEEecCCCchHHHHHH
Confidence 3445555565 77899999999766665544
No 315
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.30 E-value=71 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeC--hhHHHHHHHHHhC
Q psy11077 38 IHSIIDKEVSAGIPSDRIVIGGFS--QGGALALYSALTY 74 (97)
Q Consensus 38 l~~~i~~~~~~~~~~~~i~l~G~S--~Gg~ia~~~~~~~ 74 (97)
+.+++++. ...+..+++.++|.| ||-.++..+..+.
T Consensus 146 ii~lL~~~-~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~g 183 (301)
T PRK14194 146 CLRLLEDT-CGDLTGKHAVVIGRSNIVGKPMAALLLQAH 183 (301)
T ss_pred HHHHHHHh-CCCCCCCEEEEECCCCccHHHHHHHHHHCC
Confidence 44444443 223356789999997 9999999997653
No 316
>PRK06193 hypothetical protein; Provisional
Probab=39.64 E-value=65 Score=20.68 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChh
Q psy11077 30 GIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQG 63 (97)
Q Consensus 30 ~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~G 63 (97)
..+.+.+.+.++++.+ ....+++.++||..+
T Consensus 136 ~~~~y~~~l~~~I~~l---~~~~~~vLlVgHnp~ 166 (206)
T PRK06193 136 RNALLKAGLRPLLTTP---PDPGTNTVLVGHDDN 166 (206)
T ss_pred hHHHHHHHHHHHHhhC---CCCCCeEEEEeCchH
Confidence 3444556677777765 224567999999953
No 317
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.37 E-value=1e+02 Score=19.57 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+.+.++.+.+.+.-....+|+++|-.-.+.+|..++.+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l 63 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASM 63 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHH
Confidence 334444444331112457999999988889999998763
No 318
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=38.75 E-value=58 Score=18.74 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALA 67 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia 67 (97)
..++-.+..+ +.+.++++||+--|++.
T Consensus 47 ~sl~~av~~l-----~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 47 ASLEYAVEVL-----GVKHIIVCGHTDCGAVK 73 (119)
T ss_pred HHHHHHHHhh-----CCCEEEEEccCCCcHHH
Confidence 3344444555 77899999997655554
No 319
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=37.72 E-value=96 Score=21.07 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCceEEEEeChhHHHHHHHHHhC-------C----CcccEEEEeccCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTY-------P----KKLAGVVALSCWL 88 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~-------~----~~v~~~i~~~~~~ 88 (97)
..++.++ +.|...-+..+.+. | .+++.++++++.+
T Consensus 108 ~~~vtiv--aiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMGG~~ 153 (293)
T cd02652 108 DASVTIV--SIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAF 153 (293)
T ss_pred CCCEEEE--EcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeCCCc
Confidence 4578888 68887666666644 4 3578899999875
No 320
>KOG2960|consensus
Probab=37.58 E-value=63 Score=21.48 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHH-hCCCcccEEEEeccC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSAL-TYPKKLAGVVALSCW 87 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~-~~~~~v~~~i~~~~~ 87 (97)
.+.+.-.+++.++.+. ....++++|-.-.|.-+.++.. ++|+ ++-.|..+..
T Consensus 59 VSRaMTrRYf~Dldky------AesDvviVGAGSaGLsAAY~I~~~rPd-lkvaIIE~SV 111 (328)
T KOG2960|consen 59 VSRAMTRRYFKDLDKY------AESDVVIVGAGSAGLSAAYVIAKNRPD-LKVAIIESSV 111 (328)
T ss_pred HHHHHHHHHHHHHHhh------hccceEEECCCccccceeeeeeccCCC-ceEEEEEeee
Confidence 3444444555555544 3456777776555555555444 6675 5555554433
No 321
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.39 E-value=1.1e+02 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+.++|+++|....+.++.++..+..
T Consensus 129 ~A~rI~~~G~g~S~~vA~~~~~~l~ 153 (281)
T COG1737 129 KARRIYFFGLGSSGLVASDLAYKLM 153 (281)
T ss_pred cCCeEEEEEechhHHHHHHHHHHHH
Confidence 5678999998888888888877654
No 322
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=37.25 E-value=66 Score=20.16 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=7.8
Q ss_pred CCCCCceEEEEeCh
Q psy11077 49 GIPSDRIVIGGFSQ 62 (97)
Q Consensus 49 ~~~~~~i~l~G~S~ 62 (97)
.....+++++|.|.
T Consensus 15 ~l~~g~i~VvGcST 28 (172)
T PF04260_consen 15 NLKPGQIFVVGCST 28 (172)
T ss_dssp ---TT-EEEEEE-H
T ss_pred CCCCCCEEEEeeeH
Confidence 44667899999995
No 323
>PRK05665 amidotransferase; Provisional
Probab=36.92 E-value=67 Score=20.98 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
..++..+.++++..... .+-++|.++|..+....+
T Consensus 74 ~pwi~~l~~~i~~~~~~-----~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 74 DPWIQTLKTYLLKLYER-----GDKLLGVCFGHQLLALLL 108 (240)
T ss_pred chHHHHHHHHHHHHHhc-----CCCEEEEeHHHHHHHHHh
Confidence 44677777777776322 345899999997777666
No 324
>PLN03006 carbonate dehydratase
Probab=36.09 E-value=55 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
.-|+-.+..+ +.+.|+++|||-=|.+...+
T Consensus 160 aSLEYAV~~L-----~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 160 AALEFSVNTL-----NVENILVIGHSRCGGIQALM 189 (301)
T ss_pred hhHHHHHHHh-----CCCEEEEecCCCchHHHHHh
Confidence 3455556666 78999999999766555443
No 325
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=35.76 E-value=46 Score=21.34 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=13.6
Q ss_pred CCCceEEEEeChhHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALY 69 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~ 69 (97)
+.+++.++||+-|=.-...
T Consensus 150 ~~~tVLIVGHnp~i~~La~ 168 (201)
T PRK15416 150 PDKNIVIFTHNHCLTYIAK 168 (201)
T ss_pred CCCEEEEEeCchhHHHHHH
Confidence 4478999999987644443
No 326
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=35.43 E-value=71 Score=16.72 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=17.0
Q ss_pred CceEEEEeC-hhH-HHHHHHHHhCC
Q psy11077 53 DRIVIGGFS-QGG-ALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S-~Gg-~ia~~~~~~~~ 75 (97)
.-+++-|-+ -|+ .++..++.++.
T Consensus 33 ~~~lvhGga~~GaD~iA~~wA~~~g 57 (71)
T PF10686_consen 33 DMVLVHGGAPKGADRIAARWARERG 57 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Confidence 355777777 787 88888887764
No 327
>KOG0256|consensus
Probab=35.22 E-value=95 Score=22.54 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HhCCCCCceEEEEeChhHHHHHHHHHhCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEV--SAGIPSDRIVIGGFSQGGALALYSALTYPK 76 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~--~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~ 76 (97)
..+....+.+.+++.+.. ...++.+++.+.+.+.++.-++.++...|.
T Consensus 121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpg 170 (471)
T KOG0256|consen 121 HGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPG 170 (471)
T ss_pred cCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCC
Confidence 455666677788888775 334578899999999999999888888763
No 328
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=34.97 E-value=82 Score=18.71 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGG 64 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg 64 (97)
..+.-.+..+ +.+.|+++||+-=|
T Consensus 44 ~sl~~av~~l-----~~~~IiV~gHt~Cg 67 (142)
T cd03379 44 RSLVVSVYLL-----GTREIIVIHHTDCG 67 (142)
T ss_pred HHHHHHHHHh-----CCCEEEEEeecCCc
Confidence 3344444555 77899999997433
No 329
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=34.93 E-value=94 Score=20.56 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=29.4
Q ss_pred cccCCCCCCc----ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCh
Q psy11077 16 DLISLDVNAK----EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 16 d~~g~~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~ 62 (97)
...||++... ......+-...-...+.+.+...+++.+++...|++-
T Consensus 159 ~I~GhTD~~~~~~~~~~~NweLS~~RA~~V~~~L~~~Gi~~~ri~~~GyG~ 209 (257)
T PRK08457 159 NVRGYTDNSPLNKSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGS 209 (257)
T ss_pred EEEEEeCCCCCcCCCCccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 3456665533 2344555555566666666666688888999888643
No 330
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=34.29 E-value=65 Score=20.34 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
..++-.+..+ +.+.|+++|||-=|++...+.
T Consensus 75 asleyav~~l-----~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 75 AAIEYAVAVL-----KVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hhHHHHHHHh-----CCCEEEEeCCCcchHHHHHhc
Confidence 3445555665 778999999997666665543
No 331
>PLN02347 GMP synthetase
Probab=33.59 E-value=1.7e+02 Score=21.71 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCCceEEEEeChhH--HHHHHHHHh-CCCcccEEEEeccCCCCCC
Q psy11077 51 PSDRIVIGGFSQGG--ALALYSALT-YPKKLAGVVALSCWLPMHK 92 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg--~ia~~~~~~-~~~~v~~~i~~~~~~~~~~ 92 (97)
+...-+++|.|-|= .+++.++.+ ..+++.++.+-++..+..+
T Consensus 227 ~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E 271 (536)
T PLN02347 227 GPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKE 271 (536)
T ss_pred ccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhH
Confidence 43455678899886 555555555 5677888888888776543
No 332
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.25 E-value=1.2e+02 Score=18.89 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=18.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
..++|+++|..-.+.++..++..
T Consensus 43 ~~~rI~i~G~G~S~~~A~~~a~~ 65 (192)
T PRK00414 43 AGGKVLSCGNGGSHCDAMHFAEE 65 (192)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH
Confidence 45789999998888988888743
No 333
>PRK02947 hypothetical protein; Provisional
Probab=32.97 E-value=1.4e+02 Score=19.53 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=17.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
...+|+++|...-+.++..+..+.
T Consensus 39 ~a~~I~i~G~G~S~~vA~~~~~rl 62 (246)
T PRK02947 39 NGGLIYVFGTGHSHILAEEVFYRA 62 (246)
T ss_pred CCCEEEEEcCcHHHHHHHHhcccc
Confidence 457899999887777777665543
No 334
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.65 E-value=1.2e+02 Score=18.80 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-HhCCCCCceEEEEeCh
Q psy11077 35 AQKIHSIIDKEV-SAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 35 ~~~l~~~i~~~~-~~~~~~~~i~l~G~S~ 62 (97)
.++...+++.++ ...++..+++++|.|-
T Consensus 5 ~k~~~~vl~d~~~~s~lk~g~lfvlG~St 33 (180)
T COG4475 5 KKDTRTVLDDVQDQSELKQGQLFVLGLST 33 (180)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 344445555444 3345778999999985
No 335
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=32.56 E-value=81 Score=19.75 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=11.2
Q ss_pred CCCCCceEEEEeCh
Q psy11077 49 GIPSDRIVIGGFSQ 62 (97)
Q Consensus 49 ~~~~~~i~l~G~S~ 62 (97)
.....+++++|.|-
T Consensus 15 ~l~~g~i~VvGcST 28 (172)
T TIGR01440 15 NLKKGDLFVIGCST 28 (172)
T ss_pred CCCCCCEEEEecch
Confidence 45677899999985
No 336
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=32.45 E-value=1.3e+02 Score=19.00 Aligned_cols=53 Identities=25% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHH-------HHHHH-hCCCcccEEEEeccC
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALA-------LYSAL-TYPKKLAGVVALSCW 87 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia-------~~~~~-~~~~~v~~~i~~~~~ 87 (97)
..+.+.+.+.+..+.. +.-..+++=||+||... +..+. .+|..+...+.+-|.
T Consensus 106 ~~~~~~~~ir~~~e~~-d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 106 ALEEILEQIRKEIEKC-DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF 166 (216)
T ss_dssp HHHHHHHHHHHHHHTS-TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C
T ss_pred cccccccccchhhccc-cccccceecccccceeccccccccchhhhccccccceeecccccc
Confidence 4445555555543222 45567788788887532 22222 345555445554454
No 337
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=32.31 E-value=85 Score=18.78 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.7
Q ss_pred CCCCCceEEEEeChhHH
Q psy11077 49 GIPSDRIVIGGFSQGGA 65 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ 65 (97)
..+.+++.|.||+-|..
T Consensus 33 DP~kenLCLYG~p~~~W 49 (137)
T PF12165_consen 33 DPEKENLCLYGHPDGTW 49 (137)
T ss_pred CccccceEEecCCCCCe
Confidence 44677999999999864
No 338
>PRK15482 transcriptional regulator MurR; Provisional
Probab=32.00 E-value=1.5e+02 Score=19.53 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=18.6
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
..++|+++|...-+.++..+..+.
T Consensus 134 ~A~~I~i~G~G~S~~~A~~l~~~l 157 (285)
T PRK15482 134 KAPFIQITGLGGSALVGRDLSFKL 157 (285)
T ss_pred hCCeeEEEEeChhHHHHHHHHHHH
Confidence 557899999987777777776664
No 339
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=31.94 E-value=58 Score=22.28 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=36.9
Q ss_pred ccCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 4 TLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 4 ~~~~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+.+|++-..||..+|...+.-+.-...++..+++....--+ ..-+.||..++.++.++.
T Consensus 190 VlFaGGsyfdwFPLRGLvSdnf~~L~~~~ki~DYlWH~tLPv------------~a~v~g~FAt~TlLtKNS 249 (364)
T COG4174 190 VLFAGGSYFDWFPLRGLVSDNFDQLSWYGKITDYLWHITLPV------------LALVLGGFATLTLLTKNS 249 (364)
T ss_pred HhhcCCcceeeccccccccCChhhcChHHHHHHHHHHHHHHH------------HHHHHhhHHHHHHHhhhh
Confidence 345677778899999986654433445555555555443322 222567777777777764
No 340
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.69 E-value=1.4e+02 Score=19.51 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=23.1
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 54 RIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
.++|+|-..||.+++.-+.+.+. .+=+++..+...
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~-~~VlvlEaG~~~ 36 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGN-KKVLVLEAGPRY 36 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTT-S-EEEEESSBSC
T ss_pred CEEEECcCHHHHHHHHHHhhCCC-CcEEEEEccccC
Confidence 47899999999887777776653 455666665543
No 341
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=31.65 E-value=94 Score=19.82 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCCceEEEEeC-hhHHHHHHHHHhCCCcccEEEEec
Q psy11077 51 PSDRIVIGGFS-QGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 51 ~~~~i~l~G~S-~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
...++.++|-+ +|+.++..++.. -+..+.++.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD 59 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVD 59 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEe
Confidence 66789999865 566777777643 245555554
No 342
>COG3621 Patatin [General function prediction only]
Probab=31.41 E-value=1.1e+02 Score=21.54 Aligned_cols=41 Identities=34% Similarity=0.298 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCce--EEEEeChhHHHHHHHHHhCC
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRI--VIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i--~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+..++++.++++. +.+.-.+ .+.|.|-||.+++.++...+
T Consensus 22 ~i~lE~lr~ieqiq--Gkkl~e~FDl~~GTSiGgilal~La~~ks 64 (394)
T COG3621 22 AILLEKLRIIEQIQ--GKKLCEYFDLIGGTSIGGILALGLALGKS 64 (394)
T ss_pred HHHHHHHHHHHHHh--CCcceeeEeeecCccHHHHHHHHHhcCCC
Confidence 44455566666642 1111222 67899999999999987654
No 343
>PLN00416 carbonate dehydratase
Probab=31.41 E-value=78 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
-|+-.+..+ +.+.|+++|||.=|.+...+
T Consensus 129 sLEyAv~~L-----~V~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 129 AVEYAVVHL-----KVENILVIGHSCCGGIKGLM 157 (258)
T ss_pred HHHHHHHHh-----CCCEEEEecCCCchHHHHHH
Confidence 355555555 77899999999766554444
No 344
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=31.19 E-value=1.9e+02 Score=20.41 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
+...++.++.|.|==|..++..+. .+++|++++-+.
T Consensus 168 ~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~V 203 (367)
T PF10142_consen 168 GVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIV 203 (367)
T ss_pred CCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEE
Confidence 457789999999999999999988 556898887663
No 345
>KOG4388|consensus
Probab=31.14 E-value=1.7e+02 Score=22.64 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=30.5
Q ss_pred hCCCCCceEEEEeChhHHHHHHHHHhC----CCcccEEEEeccCCC
Q psy11077 48 AGIPSDRIVIGGFSQGGALALYSALTY----PKKLAGVVALSCWLP 89 (97)
Q Consensus 48 ~~~~~~~i~l~G~S~Gg~ia~~~~~~~----~~~v~~~i~~~~~~~ 89 (97)
.+.-.++|.++|.|.||.+.+..+.+- =...+|+++..+.+-
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ptl 509 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPTL 509 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChhh
Confidence 356678999999999998776666552 224688888876553
No 346
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=31.09 E-value=96 Score=16.92 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeChhHHHHH
Q psy11077 38 IHSIIDKEVSAGIPSDRIVIGGFSQGGALAL 68 (97)
Q Consensus 38 l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~ 68 (97)
+..|++.. ++.+++.++.+.-||..++
T Consensus 5 ~~afLKnA----WaKEPVlvvSf~ig~lavi 31 (84)
T PF14987_consen 5 LGAFLKNA----WAKEPVLVVSFVIGGLAVI 31 (84)
T ss_pred HHHHHHHh----hhcCCeEEeeehhhhhhhh
Confidence 44556554 6889999999999886543
No 347
>PRK04148 hypothetical protein; Provisional
Probab=30.89 E-value=99 Score=18.48 Aligned_cols=22 Identities=18% Similarity=-0.052 Sum_probs=17.1
Q ss_pred CCceEEEEeChhHHHHHHHHHh
Q psy11077 52 SDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
..++..+|-..|..++..+...
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC
Confidence 3579999999888788777654
No 348
>PF13289 SIR2_2: SIR2-like domain
Probab=29.59 E-value=1.1e+02 Score=17.34 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=11.6
Q ss_pred CCCceEEEEeChhHH
Q psy11077 51 PSDRIVIGGFSQGGA 65 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ 65 (97)
....++++|+|+.=.
T Consensus 85 ~~~~~lfiGys~~D~ 99 (143)
T PF13289_consen 85 RSKTLLFIGYSFNDP 99 (143)
T ss_pred cCCCEEEEEECCCCH
Confidence 456899999998743
No 349
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.31 E-value=1.9e+02 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
...+++++|..-.|.++...+..
T Consensus 61 ~ggrI~~~GaGtSg~la~~da~e 83 (299)
T PRK05441 61 QGGRLIYIGAGTSGRLGVLDASE 83 (299)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHh
Confidence 45689999999999888554443
No 350
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.57 E-value=64 Score=21.10 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=14.9
Q ss_pred ceEEEEeChhHHHHHHHHH
Q psy11077 54 RIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~ 72 (97)
...++|.|.|+.++.....
T Consensus 113 G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 113 GTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred CCEEEEECHHHHhhhccce
Confidence 4789999999988666543
No 351
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=27.93 E-value=1.5e+02 Score=17.99 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHH--hCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 32 KRAAQKIHSIIDKEVS--AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~--~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..+.+.+.+++.+... ..++.++|++..-++.+.-.+..+...|. +.+++-.|.++
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpG--D~VlVp~P~Y~ 152 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPG--DAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCC--CEEEEeCCCCC
Confidence 3344445555544321 12355677776444444444444444453 56777677654
No 352
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.79 E-value=80 Score=20.74 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=21.3
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCccc---EEEE
Q psy11077 53 DRIVIGGFSQGGALALYSALTYPKKLA---GVVA 83 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~~~v~---~~i~ 83 (97)
.-+++.| |||..-...+.+..++++ .+|+
T Consensus 87 d~ivIAG--MGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 87 DVIVIAG--MGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CEEEEeC--CcHHHHHHHHHHhhhhhcCcceEEE
Confidence 3456664 999999999988777665 4555
No 353
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=27.50 E-value=1.3e+02 Score=18.78 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCh
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~ 62 (97)
++.+.+...+.++..... ....++.++|.|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~~~iv~lGDSi 42 (214)
T cd01820 12 DGDPRWMSRHERFVAEAK---QKEPDVVFIGDSI 42 (214)
T ss_pred ccchhHHHHHHHHHHHhh---cCCCCEEEECchH
Confidence 344555555666665542 1335778888774
No 354
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=27.35 E-value=72 Score=19.26 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=17.6
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy11077 54 RIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+++++|-+.+|..++..+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~ 22 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG 22 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT
T ss_pred CEEEEecHHHHHHHHHHHhcCC
Confidence 4789999999988888887433
No 355
>PLN03019 carbonic anhydrase
Probab=27.27 E-value=95 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
..|+-.+..+ +.+.|+++|||-=|.+...+
T Consensus 203 aSIEYAV~~L-----~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 203 AAIEYAVLHL-----KVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred hhHHHHHHHh-----CCCEEEEecCCCchHHHHHH
Confidence 3455555665 77899999999766555544
No 356
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=27.27 E-value=1.1e+02 Score=16.54 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
+.+++.++|-|-|=.+|.+.+..+.
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFG 62 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCcccHHHHHHHHhc
Confidence 5578999999999999977776653
No 357
>PRK10808 outer membrane protein A; Reviewed
Probab=26.67 E-value=1.9e+02 Score=19.88 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=4.0
Q ss_pred CceEEEEe
Q psy11077 53 DRIVIGGF 60 (97)
Q Consensus 53 ~~i~l~G~ 60 (97)
.+|.|.||
T Consensus 258 ~~v~I~Gh 265 (351)
T PRK10808 258 GSVVVLGY 265 (351)
T ss_pred ceEEEEEe
Confidence 34555555
No 358
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=26.66 E-value=1.9e+02 Score=18.94 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=15.7
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
..++|+++|...-+.++..+..
T Consensus 127 ~a~~I~i~G~G~S~~~a~~~~~ 148 (284)
T PRK11302 127 QAKKISFFGLGASAAVAHDAQN 148 (284)
T ss_pred cCCeEEEEEcchHHHHHHHHHH
Confidence 4568999998776677665443
No 359
>KOG4389|consensus
Probab=26.59 E-value=1.9e+02 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCCCCceEEEEeChhHH-HHHHHHHhC-CCcccEEEEeccCCC
Q psy11077 49 GIPSDRIVIGGFSQGGA-LALYSALTY-PKKLAGVVALSCWLP 89 (97)
Q Consensus 49 ~~~~~~i~l~G~S~Gg~-ia~~~~~~~-~~~v~~~i~~~~~~~ 89 (97)
+-+.++|.|+|.|.|++ +.++++.-- ...++..|+-++.+.
T Consensus 214 GGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 214 GGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 33678999999999984 444444322 135777777665543
No 360
>PLN02154 carbonic anhydrase
Probab=26.38 E-value=1.3e+02 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
.++-.+..+ +.+.|+++|||-=|.+...+
T Consensus 155 slEyAv~~L-----~v~~IvV~GHs~CGAV~Aal 183 (290)
T PLN02154 155 ALEFAVTTL-----QVENIIVMGHSNCGGIAALM 183 (290)
T ss_pred HHHHHHHHh-----CCCEEEEecCCCchHHHHHH
Confidence 355555565 77899999999655555544
No 361
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.35 E-value=1.4e+02 Score=17.23 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=16.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+.++++++|....-.++..++.+.
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl 35 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKL 35 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHH
Confidence 467899998866666666666554
No 362
>COG5418 Predicted secreted protein [Function unknown]
Probab=26.28 E-value=1.7e+02 Score=18.08 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCCCceEEEEe
Q psy11077 28 ETGIKRAAQKIHSIIDKEV-SAGIPSDRIVIGGF 60 (97)
Q Consensus 28 ~~~~~~~~~~l~~~i~~~~-~~~~~~~~i~l~G~ 60 (97)
..+.....+.+.+.+-..+ ....+.-.++++|-
T Consensus 72 ~~~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV 105 (164)
T COG5418 72 HPGYRRVCRKIADPIGRVLEEEKPDGIKIIFIGV 105 (164)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCcCCceEEEEec
Confidence 3556666666666665554 33333347888884
No 363
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=26.22 E-value=1.2e+02 Score=18.42 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=26.4
Q ss_pred CceEEEEeChhH--HHHHHHHHhCCCcccEEEEeccCCC
Q psy11077 53 DRIVIGGFSQGG--ALALYSALTYPKKLAGVVALSCWLP 89 (97)
Q Consensus 53 ~~i~l~G~S~Gg--~ia~~~~~~~~~~v~~~i~~~~~~~ 89 (97)
..++|+|-|--| .++-.++..+|+.+..++....-.+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~ 41 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPP 41 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-G
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCC
Confidence 468999999887 5555566778988877777665443
No 364
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=26.16 E-value=2.5e+02 Score=20.18 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhH
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGG 64 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg 64 (97)
.++..+.+.+.++++.+.. +.-.-+++=||+||
T Consensus 109 g~~~~d~i~d~ir~~~E~c-d~l~gf~i~~SlgG 141 (431)
T cd02188 109 GEEVQEEILDIIDREADGS-DSLEGFVLCHSIAG 141 (431)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcceeEEEecCCC
Confidence 4555666666666654332 44455667788875
No 365
>COG4425 Predicted membrane protein [Function unknown]
Probab=26.10 E-value=62 Score=23.84 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHH-HHHh---CCCcccEEEEeccCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALY-SALT---YPKKLAGVVALSCWLP 89 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~-~~~~---~~~~v~~~i~~~~~~~ 89 (97)
...+...+.+...+.++- .-...+.++.|.|.|++-... .... ..+ ++|+...+|.++
T Consensus 375 ~aa~aLf~aVy~yw~qLP--~~sRPKLylhG~SLGa~~s~~~s~dl~dvl~d-fdGaLwSGppf~ 436 (588)
T COG4425 375 DAARALFEAVYGYWTQLP--KSSRPKLYLHGESLGAMGSEAPSMDLFDVLGD-FDGALWSGPPFN 436 (588)
T ss_pred hHHHHHHHHHHHHHHhCC--cCCCCceEEeccccccccCccccccHHHHHhh-cccceecCCCCC
Confidence 444455555555555541 114568999999999865444 2111 223 777777766553
No 366
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=26.00 E-value=2.2e+02 Score=19.39 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCceEEEEeChhHHHHHHHHHh-CC---CcccEEEEeccCCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALT-YP---KKLAGVVALSCWLP 89 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~-~~---~~v~~~i~~~~~~~ 89 (97)
..++.++ +.|...-+..+.+ +| ++++.++++++.+.
T Consensus 116 ~~~itiv--a~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~ 155 (311)
T PRK10443 116 AEPVTLV--STGPQTNVALLLASHPELHSKIARIVIMGGAMG 155 (311)
T ss_pred CCCeEEE--EccchHHHHHHHHHCchhhhhhCEEEEccCCCC
Confidence 4678888 5888777666664 45 47899999998764
No 367
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.80 E-value=90 Score=19.79 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=14.9
Q ss_pred CceEEEEeChhHHHHHHH
Q psy11077 53 DRIVIGGFSQGGALALYS 70 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~ 70 (97)
+...++|.|.|+.+....
T Consensus 113 ~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 113 RGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred CCCEEEEECHhHHhhCCC
Confidence 357899999999988873
No 368
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=25.74 E-value=1e+02 Score=19.39 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.7
Q ss_pred CceEEEEeChhHHHHHHH
Q psy11077 53 DRIVIGGFSQGGALALYS 70 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~ 70 (97)
....++|.|.|+.+....
T Consensus 113 ~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 113 RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred cCCeEEEcCHHHHHhhhc
Confidence 467999999999998886
No 369
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=25.65 E-value=2.2e+02 Score=19.38 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.1
Q ss_pred CceEEEEeChhHHHHHHHHHh-CC---CcccEEEEeccCC
Q psy11077 53 DRIVIGGFSQGGALALYSALT-YP---KKLAGVVALSCWL 88 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~-~~---~~v~~~i~~~~~~ 88 (97)
+++.|+ +.|...-+..+.+ +| .+++.++++++.+
T Consensus 129 ~~itiv--a~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 166 (318)
T cd02654 129 HEVSIV--AAGPLTNLALALRIDPDFAPLAKELVIMGGYL 166 (318)
T ss_pred CceEEE--ECCcHHHHHHHHHHChhHHHhCCEEEEeCCCc
Confidence 578888 5888666665554 56 4689999999876
No 370
>PLN03014 carbonic anhydrase
Probab=25.57 E-value=1e+02 Score=21.63 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
..|+-.+..+ +.+.|+++|||-=|.+...+
T Consensus 208 asLEYAV~~L-----~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 208 AAIEYAVLHL-----KVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred hHHHHHHHHh-----CCCEEEEeCCCCchHHHHHH
Confidence 3455555666 77899999999655554443
No 371
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=24.98 E-value=1.1e+02 Score=20.96 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHh
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
++.++++.... ...-++|-|+|+.+++.++--
T Consensus 123 El~~i~~w~~~-----~~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 123 ELKEILDWAKT-----HVTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHH-----cCCCEEEEcHHHHHHHHHcCC
Confidence 35555555421 235678889999998877764
No 372
>KOG0440|consensus
Probab=24.94 E-value=1e+02 Score=20.36 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=23.1
Q ss_pred CCCCCCccccccCCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy11077 7 GGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKE 45 (97)
Q Consensus 7 ~~~~~~~w~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 45 (97)
++.-.+-|.|-.+ +....+..++++++..+++..
T Consensus 119 g~~yeY~W~D~~~-----kp~~~sApqYId~lmtw~q~~ 152 (243)
T KOG0440|consen 119 GPNYEYLWADEKG-----KPVRVSAPQYIDYLMTWCQNQ 152 (243)
T ss_pred CCcceeeeecccC-----CccccCchHHHHHHHHHHHHh
Confidence 3444466877222 334567888999999999875
No 373
>PRK09065 glutamine amidotransferase; Provisional
Probab=24.63 E-value=1.3e+02 Score=19.52 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
+...+.++++.... .++-++|.++|..+...++
T Consensus 73 w~~~~~~~i~~~~~-----~~~PvlGIC~G~Qlla~al 105 (237)
T PRK09065 73 WSERTADWLRQAAA-----AGMPLLGICYGHQLLAHAL 105 (237)
T ss_pred hHHHHHHHHHHHHH-----CCCCEEEEChhHHHHHHHc
Confidence 45556666666521 2466899999998777765
No 374
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=24.60 E-value=2.1e+02 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
...+++++|..-.|.++..-+...+
T Consensus 48 ~ggrl~~~GaGtSg~la~~da~e~~ 72 (257)
T cd05007 48 AGGRLIYVGAGTSGRLGVLDASELP 72 (257)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHhcc
Confidence 4568999999988888865555443
No 375
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=24.54 E-value=40 Score=19.40 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=10.5
Q ss_pred CCCceEEEEeChhH
Q psy11077 51 PSDRIVIGGFSQGG 64 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg 64 (97)
+.+.+.+.|+|+|=
T Consensus 74 ~~k~I~VYGyS~~f 87 (108)
T PF05005_consen 74 DKKKIKVYGYSQGF 87 (108)
T ss_dssp TTTEEEEES-BTTT
T ss_pred CCCEEEEEEecccc
Confidence 45679999999984
No 376
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.07 E-value=1.9e+02 Score=17.93 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
+.+.+++++..+.-...++|+++|..--+.++..+
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~ 56 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAADAQHI 56 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHH
Confidence 44444444433111256789999976666655554
No 377
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=23.95 E-value=2.5e+02 Score=19.28 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.1
Q ss_pred CceEEEEeChhHHHHHHHHH-hCC----CcccEEEEeccCCCC
Q psy11077 53 DRIVIGGFSQGGALALYSAL-TYP----KKLAGVVALSCWLPM 90 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~-~~~----~~v~~~i~~~~~~~~ 90 (97)
+.+.|+ +.|...-+.++. ++| ++++.++++++.+..
T Consensus 130 ~eItiv--a~GPLTNlAlal~~~pp~~~~~ik~iviMGG~~~~ 170 (326)
T PTZ00313 130 EKVTIC--VTGPLSNVAWCIEKYGEEFTKKVEECVIMGGAVDV 170 (326)
T ss_pred CCEEEE--ECCcHHHHHHHHHhCCHHHHHhcCEEEEeCCcccC
Confidence 468888 588877777776 455 479999999988643
No 378
>PRK15219 carbonic anhydrase; Provisional
Probab=23.94 E-value=1.2e+02 Score=20.02 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 36 QKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 36 ~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
.-++-.+..+ +.+.|+++|||-=|.+...+
T Consensus 131 ~slEyAv~~L-----~v~~IvVlGHt~CGav~Aa~ 160 (245)
T PRK15219 131 GSMEFACAVA-----GAKVVLVMGHTACGAVKGAI 160 (245)
T ss_pred hHHHHHHHHc-----CCCEEEEecCCcchHHHHHH
Confidence 3455555555 77899999999766555443
No 379
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=23.92 E-value=1.9e+02 Score=19.39 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=29.9
Q ss_pred CCceEEEEeChhHHHHHHHHHhC-C-CcccEEEEeccCCCCCCCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTY-P-KKLAGVVALSCWLPMHKSF 94 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~-~-~~v~~~i~~~~~~~~~~~~ 94 (97)
.+++.++.|.+|+.-+...+... - ..++.+|.++..-.+++++
T Consensus 59 ~~~itv~~~GvG~psAai~~eeL~~~~G~k~iIriGtcG~L~~~i 103 (266)
T TIGR01721 59 AEGTSIIDFKLGSPGAALIXDLCSFLPHPKAAIMLGMCGGLRSHY 103 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCC
Confidence 34667999999997777776643 1 1478888887666665544
No 380
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=23.57 E-value=1.2e+02 Score=18.97 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=10.7
Q ss_pred CceEEEEeChhHHH
Q psy11077 53 DRIVIGGFSQGGAL 66 (97)
Q Consensus 53 ~~i~l~G~S~Gg~i 66 (97)
+..+|+|||.--=+
T Consensus 101 ~~tILVGHsL~nDL 114 (174)
T cd06143 101 LGCIFVGHGLAKDF 114 (174)
T ss_pred CCCEEEeccchhHH
Confidence 35699999998743
No 381
>PRK12467 peptide synthase; Provisional
Probab=23.57 E-value=4.8e+02 Score=24.70 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEeccCCC
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLP 89 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~---~~~v~~~i~~~~~~~ 89 (97)
.+++.......+.+...+ ...+..+.|+|+||.++..++... .+.+..+.++....+
T Consensus 3737 ~~~~~~~~~y~~~~~~~~----~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~~~~~~~~~~~ 3796 (3956)
T PRK12467 3737 TSLQAMAVQYADYILWQQ----AKGPYGLLGWSLGGTLARLVAELLEREGESEAFLGLFDNTLP 3796 (3956)
T ss_pred cchHHHHHHHHHHHHHhc----cCCCeeeeeeecchHHHHHHHHHHHHcCCceeEEEEEecccc
Confidence 345554555555554441 344689999999999998887753 344555555543333
No 382
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=23.56 E-value=1.8e+02 Score=17.69 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=27.3
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHHHHHH-hCCCCCceEEEEeC
Q psy11077 15 FDLISLDVNAKEDETGIKRAAQKIHSIIDKEVS-AGIPSDRIVIGGFS 61 (97)
Q Consensus 15 ~d~~g~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~i~l~G~S 61 (97)
+...||.++.........-..+-...+.+.+.. .+++..++.+.|+.
T Consensus 86 v~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~~gi~~~ri~~~g~G 133 (160)
T PRK09967 86 ARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLG 133 (160)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHeEEEEec
Confidence 456777776554455555555555555555543 35666677777654
No 383
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.51 E-value=92 Score=19.87 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.5
Q ss_pred CceEEEEeChhHHHHHHHH
Q psy11077 53 DRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~ 71 (97)
....++|.|.|+++...+.
T Consensus 116 ~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 116 GGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred cCCEEEEccHHHHhhhhcc
Confidence 4578999999999987664
No 384
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.50 E-value=1.6e+02 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=20.3
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 54 RIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 54 ~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
++.++|-+.+|..++.-+.+....=..+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~ 32 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLIN 32 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEEC
Confidence 47889999999877777654322223455554
No 385
>KOG1578|consensus
Probab=23.27 E-value=56 Score=22.06 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhC
Q psy11077 38 IHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 38 l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
++-++..+ +.++|+++|||.=|.++..+....
T Consensus 144 lE~aV~~l-----kvenIiv~ghs~cgGik~~m~~~~ 175 (276)
T KOG1578|consen 144 LEYAVTTL-----KVENIIVIGHSLCGGIKGLMSFSL 175 (276)
T ss_pred HHHHHHHh-----ccceEEEeccccCCchhhcccccc
Confidence 45555555 779999999999888877665543
No 386
>PHA00490 terminal protein
Probab=23.21 E-value=1.1e+02 Score=19.87 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHHhCCCcccE
Q psy11077 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAG 80 (97)
Q Consensus 31 ~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~ 80 (97)
++...+...++++..+. .+....++-.|.|+| .+........|..|.|
T Consensus 94 I~~nTKeaQrvvde~~~-~~~Dke~isGGk~qG-Tvgqr~~llsp~~vtG 141 (266)
T PHA00490 94 IESNTKEAQRVVDEILD-RFNDKEVISGGKSQG-TVGQRKELLSPPDVTG 141 (266)
T ss_pred HHhccHHHHHHHHHHHH-HhcCcceeeCCCCCC-cHhhhhhhcCCcccCC
Confidence 33334444555555432 236678999999999 7777777777655554
No 387
>PRK10437 carbonic anhydrase; Provisional
Probab=23.09 E-value=1.2e+02 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHH
Q psy11077 37 KIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 37 ~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~ 70 (97)
-++-.+..+ +.+.|+++||+-=|.+...+
T Consensus 80 ~leyAV~~L-----~v~~IvV~GHt~CG~V~Aal 108 (220)
T PRK10437 80 VVQYAVDVL-----EVEHIIICGHYGCGGVQAAV 108 (220)
T ss_pred HHHHHHHHc-----CCCEEEEeCCCCchHHHHHH
Confidence 344445555 77899999999766655544
No 388
>PRK06847 hypothetical protein; Provisional
Probab=22.76 E-value=1.2e+02 Score=20.48 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.1
Q ss_pred CCceEEEEeChhHHHHHHHHHhCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
..+|+|+|-+.+|..++..+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g 27 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAG 27 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCC
Confidence 457999999999998888887754
No 389
>COG3675 Predicted lipase [Lipid metabolism]
Probab=22.52 E-value=70 Score=22.06 Aligned_cols=29 Identities=38% Similarity=0.618 Sum_probs=20.4
Q ss_pred CceEEEEeChhHHHHHHHHH----hCCCcccEEE
Q psy11077 53 DRIVIGGFSQGGALALYSAL----TYPKKLAGVV 82 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~----~~~~~v~~~i 82 (97)
.++.+.|||-|++++..... +.| +++.++
T Consensus 175 Yrig~tghS~g~aii~vrGtyfe~k~p-~vdnlv 207 (332)
T COG3675 175 YRIGITGHSSGGAIICVRGTYFERKYP-RVDNLV 207 (332)
T ss_pred eEEEEEeecCCccEEEEeccchhcccC-Ccccce
Confidence 56899999999988765554 234 455555
No 390
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=22.51 E-value=2.6e+02 Score=18.97 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhH
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGG 64 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg 64 (97)
..+++.+.+++..+.. |.-..+++=||+||
T Consensus 71 ~~e~i~~~ir~~~E~c-D~~~gf~i~~slgG 100 (328)
T cd00286 71 YQEEILDIIRKEAEEC-DSLQGFFITHSLGG 100 (328)
T ss_pred HHHHHHHHHHHHHHhC-CCccceEEEeecCC
Confidence 4455555555543332 44566777778876
No 391
>KOG2308|consensus
Probab=22.47 E-value=32 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy11077 53 DRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
.+|.+.|||.|..+++..+...
T Consensus 417 G~Vsi~gHSLGSvit~Dil~~q 438 (741)
T KOG2308|consen 417 GKVSIAGHSLGSVITYDILSHQ 438 (741)
T ss_pred CceeeccCCCCceEEEeecccc
Confidence 3699999999999999988876
No 392
>PRK06475 salicylate hydroxylase; Provisional
Probab=22.40 E-value=1.2e+02 Score=21.01 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=19.3
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
.+|.++|-+.+|..++.++.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G 25 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG 25 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC
Confidence 57999999999988888877653
No 393
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=22.08 E-value=1.9e+02 Score=17.33 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeChhH
Q psy11077 35 AQKIHSIIDKEVSAGIPSDRIVIGGFSQGG 64 (97)
Q Consensus 35 ~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg 64 (97)
.+.+.++.+.+...+ +.++|+++| +||
T Consensus 4 ~~~i~~~~~~i~~~~-~~~~iv~~G--iGG 30 (158)
T cd05015 4 LERIKEFAEKVRSGK-KITDVVVIG--IGG 30 (158)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEEEe--cCc
Confidence 445666666663211 357888886 444
No 394
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=22.01 E-value=1.1e+02 Score=19.70 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 33 ~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
....-++-.+..+ +.+.|+++||+-=|++.+.+.
T Consensus 77 ~~l~sleyAv~~L-----~v~~IiV~GH~~CGav~aa~~ 110 (207)
T COG0288 77 SVLRSLEYAVYVL-----GVKEIIVCGHTDCGAVKAALD 110 (207)
T ss_pred chhHHHHHHHHHc-----CCCEEEEecCCCcHHHHhccc
Confidence 3444455555665 789999999986666655543
No 395
>PRK06490 glutamine amidotransferase; Provisional
Probab=21.90 E-value=1.3e+02 Score=19.62 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
+...+.++++... ..++-++|.++|..+...++
T Consensus 71 wi~~~~~~i~~~~-----~~~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 71 FIRREIDWISVPL-----KENKPFLGICLGAQMLARHL 103 (239)
T ss_pred HHHHHHHHHHHHH-----HCCCCEEEECHhHHHHHHHc
Confidence 4555666666552 22456899999998877775
No 396
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=21.83 E-value=2.6e+02 Score=18.85 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.7
Q ss_pred CceEEEEeChhHHHHHHHHHh-CC---CcccEEEEeccCC
Q psy11077 53 DRIVIGGFSQGGALALYSALT-YP---KKLAGVVALSCWL 88 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~-~~---~~v~~~i~~~~~~ 88 (97)
+++.|+ +.|...-+..+.+ +| .+++.++++++.+
T Consensus 116 ~~itil--a~GPLTNlA~al~~~P~i~~~i~~iviMGG~~ 153 (304)
T PRK10768 116 EPVTLV--AIGPLTNIALLLSTYPEVKPYIKRIVLMGGSA 153 (304)
T ss_pred CCEEEE--ECCcHHHHHHHHHHChhhHhhcCEEEEecCCc
Confidence 578888 6888777666665 55 4789999999875
No 397
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=21.76 E-value=1.9e+02 Score=17.08 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.3
Q ss_pred CCCceEEEEeChhHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYS 70 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~ 70 (97)
+.+.|+++||+-=|++...+
T Consensus 53 ~v~~IiV~gHt~CGa~~~~~ 72 (153)
T PF00484_consen 53 GVKEIIVCGHTDCGAIKAAL 72 (153)
T ss_dssp T-SEEEEEEETT-HHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHH
Confidence 77899999999777666443
No 398
>KOG2248|consensus
Probab=21.46 E-value=1.4e+02 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=20.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~~~~v~~~i~~~ 85 (97)
-..+-+++|||.=.-+-..=+ .|+.-++..+++.
T Consensus 291 ~~~~TILVGHSLenDL~aLKl-~H~~ViDTa~lf~ 324 (380)
T KOG2248|consen 291 ISKNTILVGHSLENDLKALKL-DHPSVIDTAVLFK 324 (380)
T ss_pred cCcCcEEEeechhhHHHHHhh-hCCceeeeeEEEe
Confidence 345789999998864433322 3665566554443
No 399
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.35 E-value=1.6e+02 Score=16.32 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy11077 51 PSDRIVIGGFSQGGALALYSALTY 74 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~~ 74 (97)
+.++|+++|......+|..+..+.
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l 27 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKL 27 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHH
Confidence 567999999888888888777765
No 400
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.30 E-value=1.8e+02 Score=17.69 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHH
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
+.+.+.++++... ....-++|-++|..+....+
T Consensus 66 ~~~~~~~~i~~~~-----~~~~pilgiC~G~q~l~~~l 98 (188)
T cd01741 66 WLKKLKELIRQAL-----AAGKPVLGICLGHQLLARAL 98 (188)
T ss_pred HHHHHHHHHHHHH-----HCCCCEEEECccHHHHHHHh
Confidence 3445666666552 22367899999997776654
No 401
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=21.30 E-value=2.5e+02 Score=18.81 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=29.4
Q ss_pred ccccCCCCCCc----ccHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCh
Q psy11077 15 FDLISLDVNAK----EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQ 62 (97)
Q Consensus 15 ~d~~g~~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~ 62 (97)
....||.+... ......+-...-...+.+.+...+++.+++.+.|++-
T Consensus 166 I~I~GHTD~~~~~~~~~~~Nw~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G~ 217 (281)
T PRK09038 166 IHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGE 217 (281)
T ss_pred EEEEEECCCCCCcCCCCccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECC
Confidence 45566766532 1223555555556666666656678888898887654
No 402
>PRK13463 phosphatase PhoE; Provisional
Probab=21.26 E-value=2.2e+02 Score=17.72 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHH
Q psy11077 29 TGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSAL 72 (97)
Q Consensus 29 ~~~~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~ 72 (97)
.+.++..+-+..+++.+.... ..+++.+++|+.=-.+.+.++.
T Consensus 121 Es~~~~~~R~~~~l~~i~~~~-~~~~vlvVsHg~~ir~~~~~~~ 163 (203)
T PRK13463 121 ENFEAVHKRVIEGMQLLLEKH-KGESILIVSHAAAAKLLVGHFA 163 (203)
T ss_pred eEHHHHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHh
Confidence 355566666666666654332 3457888876544433333333
No 403
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=21.16 E-value=1.7e+02 Score=19.63 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeChhHHHHHHHHH-hCC---CcccEEEEeccCCCCC
Q psy11077 34 AAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSAL-TYP---KKLAGVVALSCWLPMH 91 (97)
Q Consensus 34 ~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ia~~~~~-~~~---~~v~~~i~~~~~~~~~ 91 (97)
.++.+.+.+++ ..+++.++ +.|...-+..+. ++| ++++.++.+++.+...
T Consensus 106 a~~~i~~~~~~------~~~~vtiv--a~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 106 AVDFIIELLKA------YPGEVTIV--AIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp HHHHHHHHHHH------SSSTEEEE--ECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred HHHHHHHHHHh------cCCcEEEE--ecCcchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 44555555543 34568888 577754444444 345 4688999999888743
No 404
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=21.15 E-value=1.5e+02 Score=15.78 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=16.7
Q ss_pred eChhHHHHHHHHH-hCCCcccEEEEecc
Q psy11077 60 FSQGGALALYSAL-TYPKKLAGVVALSC 86 (97)
Q Consensus 60 ~S~Gg~ia~~~~~-~~~~~v~~~i~~~~ 86 (97)
-|-||.+...+.. .....|+++|.+..
T Consensus 17 ~~sGG~vTaLl~~lLe~g~Vd~vv~~~~ 44 (82)
T PF04422_consen 17 SQSGGVVTALLAYLLESGLVDGVVVVGR 44 (82)
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEEEee
Confidence 3556655444443 44567999998873
No 405
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=20.81 E-value=1.3e+02 Score=26.96 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=16.9
Q ss_pred CCCceEEEEeChhHHHHHHHH
Q psy11077 51 PSDRIVIGGFSQGGALALYSA 71 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~ 71 (97)
+..+-.++|||+|=..++..+
T Consensus 672 Gi~Pd~v~GHSlGE~aAa~aA 692 (2582)
T TIGR02813 672 GFKADMTAGHSFGELSALCAA 692 (2582)
T ss_pred CCccceeecCCHHHHHHHHHh
Confidence 556778999999988877665
No 406
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=20.70 E-value=2.3e+02 Score=20.22 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHhCCCcccEEEEeccCCCCC
Q psy11077 61 SQGGALALYSALTYPKKLAGVVALSCWLPMH 91 (97)
Q Consensus 61 S~Gg~ia~~~~~~~~~~v~~~i~~~~~~~~~ 91 (97)
.+|=.+..++ ++..+..+|+++++.|-.
T Consensus 218 ~ygmgliqrl---YqpyFa~viFCG~~yp~~ 245 (390)
T PF03385_consen 218 KYGMGLIQRL---YQPYFAMVIFCGSWYPDQ 245 (390)
T ss_pred hhhHHHHHHH---hcccccEEEecCCcCchh
Confidence 4444443333 555799999999998754
No 407
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=20.59 E-value=2.7e+02 Score=18.53 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHHH-HHHHHHhCCCcccEEEEeccCC
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGAL-ALYSALTYPKKLAGVVALSCWL 88 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~i-a~~~~~~~~~~v~~~i~~~~~~ 88 (97)
+.+.++..+++++.... +...+.++|.+....- ++.++.++| .+-..+.+-|..
T Consensus 13 ~~~~~d~~~vi~~a~~~--gv~~~~~~g~~~~~~~~~~~la~~y~-~v~~~~G~HP~~ 67 (256)
T COG0084 13 EEFDEDRDEVIARAREA--GVKKMVVVGTDLEDFKRALELAEKYP-NVYAAVGVHPLD 67 (256)
T ss_pred hhhcCCHHHHHHHHHHc--CCcEEEEeecCHHHHHHHHHHHHhCC-CeEEEEeeCCCc
Confidence 34444555566655332 5689999999999865 888888898 566666666665
No 408
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=20.49 E-value=3.4e+02 Score=19.59 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeChhHH
Q psy11077 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGA 65 (97)
Q Consensus 32 ~~~~~~l~~~i~~~~~~~~~~~~i~l~G~S~Gg~ 65 (97)
.+..+++.+.+.++.+.. |.-.-+++=||+||.
T Consensus 106 ~~~~~~~~d~ir~~~E~c-d~~~gf~~~~sl~GG 138 (446)
T cd02189 106 PQIKEDILDLIRKEVEKC-DSFEGFLVLHSLAGG 138 (446)
T ss_pred hhhHHHHHHHHHHHHHhC-CCccceEEEecCCCC
Confidence 344455555555554332 555566777788763
No 409
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=20.47 E-value=1.4e+02 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=19.6
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy11077 53 DRIVIGGFSQGGALALYSALTYP 75 (97)
Q Consensus 53 ~~i~l~G~S~Gg~ia~~~~~~~~ 75 (97)
++++++|-..||.++..++.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G 24 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG 24 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC
Confidence 46899999999999998888754
No 410
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.37 E-value=1.7e+02 Score=16.22 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy11077 51 PSDRIVIGGFSQGGALALYSALT 73 (97)
Q Consensus 51 ~~~~i~l~G~S~Gg~ia~~~~~~ 73 (97)
+.++++++|....-.++..+...
T Consensus 12 ~~~~i~i~g~g~s~~~a~~~~~~ 34 (139)
T cd05013 12 KARRIYIFGVGSSGLVAEYLAYK 34 (139)
T ss_pred hCCEEEEEEcCchHHHHHHHHHH
Confidence 34678888876555555554443
No 411
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=20.21 E-value=1.6e+02 Score=15.75 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=8.4
Q ss_pred CCCceEEEEeChh
Q psy11077 51 PSDRIVIGGFSQG 63 (97)
Q Consensus 51 ~~~~i~l~G~S~G 63 (97)
....+.+.||+-.
T Consensus 32 ~~~~v~v~g~a~~ 44 (106)
T cd07185 32 PDAKIRIEGHTDS 44 (106)
T ss_pred CCceEEEEEEeCC
Confidence 3477777777643
No 412
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=20.03 E-value=2.9e+02 Score=18.58 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCceEEEEeChhHHHHHHHHHh-CC---CcccEEEEeccCCCC
Q psy11077 52 SDRIVIGGFSQGGALALYSALT-YP---KKLAGVVALSCWLPM 90 (97)
Q Consensus 52 ~~~i~l~G~S~Gg~ia~~~~~~-~~---~~v~~~i~~~~~~~~ 90 (97)
.+++.++ +.|...-+..+.+ +| ++++.++.+++.+..
T Consensus 114 ~~~vtiv--aiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~ 154 (304)
T cd02650 114 PGELTLV--AVGPLTNLALALARDPDFAKLVKQVVVMGGAFTV 154 (304)
T ss_pred CCCeEEE--ECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccC
Confidence 3578888 5788766665554 55 468999999988754
Done!