RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11077
(97 letters)
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 142 bits (361), Expect = 1e-44
Identities = 54/95 (56%), Positives = 70/95 (73%)
Query: 1 MPVTLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGF 60
PVTLNGG MP+WFD++ L NA EDE GIK +A+ I +ID E+ GIP+ RI+IGGF
Sbjct: 50 RPVTLNGGMRMPAWFDIVGLSPNASEDEAGIKNSAETIEELIDAELKTGIPASRIIIGGF 109
Query: 61 SQGGALALYSALTYPKKLAGVVALSCWLPMHKSFP 95
SQG A+ALY+ALT P+ L G++A S LP+ + FP
Sbjct: 110 SQGAAVALYTALTSPQPLGGIIAFSGALPLPQKFP 144
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 71.6 bits (176), Expect = 7e-17
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 2 PVTLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFS 61
PV NGG +D S D E + + + GI S RI++ GFS
Sbjct: 53 PVAENGGPRFFRRYDEGSFD-----QEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFS 107
Query: 62 QGGALALYSALTYPKKLAGVVALSCWLP 89
QG +AL LT P AG + S LP
Sbjct: 108 QGANIALSLGLTLPGLFAGAILFSGMLP 135
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 38.9 bits (91), Expect = 7e-05
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 26 EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
++ A + +++D + +V+ G S GGA+AL +A P+++AG+V +S
Sbjct: 43 RTPYSLEDDAADLAALLDA-----LGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLIS 97
Query: 86 CWLP 89
L
Sbjct: 98 PPLR 101
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 37.5 bits (87), Expect = 3e-04
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 51 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 89
D++ + G S GG +AL A YP ++ +V + P
Sbjct: 40 GLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHP 78
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 37.4 bits (87), Expect = 4e-04
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 44 KEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 91
+ ++ P + + G S GG +AL YP ++ G+V S L +
Sbjct: 98 ETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG 145
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This
family contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 34.7 bits (80), Expect = 0.002
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 47 SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
A + +RIV+ G S GG +AL A P+ A VV +
Sbjct: 52 DAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAA 90
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 38 IHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86
I ++ + + + + G+S GG +ALY AL YP+++ G++ S
Sbjct: 56 IAQLLLATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESG 104
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 34.6 bits (78), Expect = 0.004
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90
+++V+ G S GGA+AL AL +P ++ G+V + P
Sbjct: 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPP 125
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 34.2 bits (79), Expect = 0.004
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH-KSFPAI 97
D I + G S GG AL A YP K +V + P++ KS+ I
Sbjct: 85 DEIAVVGLSMGGVFALKLAYHYPPK--KIVPMCA--PVNVKSWRII 126
>gnl|CDD|214007 cd12808, Esterase_713_like-1, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 309
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 56 VIGGFSQGGALALYSALTYPKKLAGVVAL 84
++ SQGG A +A P + VVAL
Sbjct: 191 IVVAHSQGGGFAFEAARARPDLVRAVVAL 219
>gnl|CDD|236695 PRK10439, PRK10439, enterobactin/ferric enterobactin esterase;
Provisional.
Length = 411
Score = 33.5 bits (77), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
DR V+ G S GG ALY+ L +P++ V++ S
Sbjct: 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQS 320
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 32.8 bits (75), Expect = 0.011
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
D + G S GG ALY AL YP V + S
Sbjct: 108 PDGRALAGQSMGGLGALYLALKYPDLFGSVSSFS 141
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can
hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming
active at the lipid/water interface, although several
examples of lipases have been identified that do not
undergo interfacial activation . The active site of a
lipase contains a catalytic triad consisting of Ser -
His - Asp/Glu, but unlike most serine proteases, the
active site is buried inside the structure. A "lid" or
"flap" covers the active site, making it inaccessible
to solvent and substrates. The lid opens during the
process of interfacial activation, allowing the lipid
substrate access to the active site.
Length = 153
Score = 32.5 bits (74), Expect = 0.014
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 30 GIKRAAQKIHSIIDKEVSAGI---PSDRIVIGGFSQGGALALYSAL----TYPKKLAGVV 82
G +AA+ + +++ + + + P +I + G S GGALA + L +L V
Sbjct: 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVY 61
Query: 83 ALSC 86
Sbjct: 62 TFGP 65
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 32.5 bits (74), Expect = 0.022
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 50 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
I ++ + G+S G +ALY AL + K+ G V +S
Sbjct: 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIIS 1477
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 31.8 bits (72), Expect = 0.037
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 41 IIDKEVSA--GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
+I + +++ I RI + G S+GG A +P A V ++
Sbjct: 255 LILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIA 301
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 30.7 bits (69), Expect = 0.080
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALT----YPKKLAGVVALSCWLPMHKSFPAI 97
GI RI + G S GG LAL AL A V +S L + S ++
Sbjct: 148 GIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASL 200
>gnl|CDD|221019 pfam11187, DUF2974, Protein of unknown function (DUF2974). This
bacterial family of proteins has no known function.
Length = 224
Score = 30.3 bits (69), Expect = 0.10
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKL 78
I +GG S+GG LA+Y+A+ L
Sbjct: 83 PGPIYLGGHSKGGNLAVYAAMNAEPDL 109
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 29.7 bits (67), Expect = 0.16
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90
RI + GF GG LAL +A P V A +
Sbjct: 112 KRIGVVGFCMGGGLALLAATRAP----EVKAAVAFYGG 145
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 29.6 bits (67), Expect = 0.19
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 35 AQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 84
I I+ S P +++ G S GG +A +ALT P + V
Sbjct: 67 NDAIRYILSLYNSNRPPPTSVILIGHSMGGLVAR-AALTLPNYIPDSVNT 115
>gnl|CDD|223700 COG0627, COG0627, Predicted esterase [General function prediction
only].
Length = 316
Score = 29.7 bits (67), Expect = 0.19
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
D I G S GG AL AL +P + + S
Sbjct: 152 DGRAIAGHSMGGYGALKLALKHPDRFKSASSFS 184
>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family
consists of several bacterial acetyl xylan esterase
proteins. Acetyl xylan esterases are enzymes that
hydrolyse the ester linkages of the acetyl groups in
position 2 and/or 3 of the xylose moieties of natural
acetylated xylan from hardwood. These enzymes are one of
the accessory enzymes which are part of the xylanolytic
system, together with xylanases, beta-xylosidases,
alpha-arabinofuranosidases and methylglucuronidases;
these are all required for the complete hydrolysis of
xylan.
Length = 319
Score = 29.6 bits (67), Expect = 0.20
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 83
+RI + G SQGGALAL +A P ++ VVA
Sbjct: 173 EERIGVYGASQGGALALAAAALSP-RIKKVVA 203
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 29.3 bits (66), Expect = 0.21
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGV 81
GI R+ + G S GG +A A YP A +
Sbjct: 140 GIDPARVYVTGLSNGGRMANRLACEYPDIFAAI 172
>gnl|CDD|119023 pfam10503, Esterase_phd, Esterase PHB depolymerase. This family of
proteins include acetyl xylan esterases (AXE), feruloyl
esterases (FAE), and poly(3-hydroxybutyrate) (PHB)
depolymerases.
Length = 226
Score = 29.3 bits (65), Expect = 0.27
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 35 AQKIHSIIDKEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGV 81
A I ++ D A G + R+ + G S G ALA A +P + A V
Sbjct: 84 AATIAALADAIADAHGFDAARVYVAGLSAGAALADLLAHCHPDRFAAV 131
>gnl|CDD|225256 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 28.9 bits (65), Expect = 0.29
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
+D V+ G S GG ++LY+ L +P++ V++ S
Sbjct: 176 ADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQS 209
>gnl|CDD|216291 pfam01083, Cutinase, Cutinase.
Length = 179
Score = 28.8 bits (65), Expect = 0.34
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 51 PSDRIVIGGFSQGGALA 67
P+ +IV+GG+SQG A+
Sbjct: 79 PNTKIVLGGYSQGAAVM 95
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 28.6 bits (65), Expect = 0.36
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86
GI V+GG S GG AL A+ YP ++ + ++
Sbjct: 144 GITRLAAVVGG-SMGGMQALEWAIDYPDRVRSALVIAS 180
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 28.6 bits (64), Expect = 0.45
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 46 VSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
++A P D + G+S GG +AL+ A T+P ++ +V ++
Sbjct: 59 IAAQAP-DPAIWLGWSLGGLVALHIAATHPDRVRALVTVA 97
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 28.1 bits (63), Expect = 0.53
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVV 82
D+ + G S GG LA AL Y + L G++
Sbjct: 97 DKFYLLGHSWGGMLAQEYALKYGQHLKGLI 126
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 28.4 bits (64), Expect = 0.55
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 16 DLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRI 55
D+I LD N K +E IK A Q + + E S GI D +
Sbjct: 200 DIIMLD-NMKPEE--IKEAVQLLKGRVLLEASGGITLDNL 236
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 28.0 bits (63), Expect = 0.62
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 83
DRIV G S GG L A P AG++A
Sbjct: 526 PDRIVAIGGSAGGMLMGAVANMAPDLFAGIIA 557
>gnl|CDD|233393 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes [Amino acid biosynthesis, Aspartate
family].
Length = 351
Score = 27.7 bits (62), Expect = 0.77
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
GI V+GG S GG AL A+ YP+++ +V L+
Sbjct: 124 GIEQIAAVVGG-SMGGMQALEWAIDYPERVRAIVVLA 159
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 27.5 bits (61), Expect = 0.89
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 39 HSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 90
H + K G+P + + G S G +++ +A P ++ +S P+
Sbjct: 86 HVVTIKSTYPGVP---VFLLGHSMGATISILAAYKNPNLFTAMILMS---PL 131
>gnl|CDD|233593 TIGR01840, esterase_phb, esterase, PHB depolymerase family. This
model describes a subfamily among lipases of the
ab-hydrolase family. This subfamily includes bacterial
depolymerases for poly(3-hydroxybutyrate) (PHB) and
related polyhydroxyalkanoates (PHA), as well as acetyl
xylan esterases, feruloyl esterases, and others from
fungi [Fatty acid and phospholipid metabolism,
Degradation].
Length = 212
Score = 27.5 bits (61), Expect = 0.93
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 33 RAAQKIHSIIDK-EVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
+ +H +ID + + I +R+ + G S GG + TYP AG + +
Sbjct: 74 GEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNA 127
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 27.5 bits (61), Expect = 1.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 56 VIGGFSQGGALALYSALTYPKKLAGVVAL 84
V+ G S GG AL +A+ YP+ +AGV L
Sbjct: 155 VLVGNSLGGFTALSTAVGYPELVAGVALL 183
>gnl|CDD|165792 PLN00413, PLN00413, triacylglycerol lipase.
Length = 479
Score = 27.7 bits (61), Expect = 1.1
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 8 GYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSIID--KEVSAGIPSDRIVIGGFSQGGA 65
G P W + I+LD ET + ++I+ KE+ P+ + ++ G S GGA
Sbjct: 243 GLPKEGWPEEINLD------ETQNATSLLAYYTILRHLKEIFDQNPTSKFILSGHSLGGA 296
Query: 66 LA-LYSAL 72
LA L++A+
Sbjct: 297 LAILFTAV 304
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 27.4 bits (61), Expect = 1.1
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 26 EDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
+ I A + ++D + GI V G + GG + L AL YP++L +V ++
Sbjct: 57 PPDYSIAHMADDVLQLLD---ALGIERFHFV--GHALGGLIGLQLALDYPERLTSLVLIN 111
Query: 86 CWLPM 90
W
Sbjct: 112 GWSRP 116
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 27.4 bits (61), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 54 RIVIGGFSQGGALALYSALTYPKKLAGV 81
RI + G SQGG LAL +A P+ A V
Sbjct: 177 RIGVTGGSQGGGLALAAAALDPRIKAVV 204
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 83
DR+ I G S GG L + P VA
Sbjct: 63 PDRLAIWGGSYGGYLTGAALNQRPDLFKAAVA 94
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 26.9 bits (60), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86
GI V+GG S GG AL A+ YP ++ + ++
Sbjct: 144 GIKKLAAVVGG-SMGGMQALEWAIRYPDRVRRAIPIAT 180
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 27.0 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 24 AKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71
AK D RAA++++ K+ P D +V+GG G A A+Y+A
Sbjct: 192 AKLDTGAAARAAEELN---AKD-----PYDVLVVGGGPAGAAAAIYAA 231
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 27.0 bits (60), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 24 AKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSA 71
AK D KR A++ + K+ D +V+GG G A A+Y+A
Sbjct: 192 AKIDTGAAKRDAEEFN---AKD-----AYDVLVVGGGPAGAAAAIYAA 231
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from the
cytosol to the periplasmic space. A large majority of
sequences in this family have yet to be characterized.
Length = 315
Score = 26.9 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 56 VIGGFSQGGALALYSALTYPKKLAGVVAL 84
V+ G SQ G L +AL P + G+V++
Sbjct: 192 VLLGHSQSGPFPLEAALLRPAGVKGIVSV 220
>gnl|CDD|184504 PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 448
Score = 26.7 bits (60), Expect = 2.2
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 14 WFDLISLDVNAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIG-GFSQGGALALYSAL 72
W DL + + +E IK+AA+KI S D +V +VIG G S GA A L
Sbjct: 47 WLDLPE-NYDKEEFAR-IKKAAEKIKS--DSDVL-------VVIGIGGSYLGARAAIEFL 95
Query: 73 TYP 75
+
Sbjct: 96 NHS 98
>gnl|CDD|181022 PRK07535, PRK07535, methyltetrahydrofolate:corrinoid/iron-sulfur
protein methyltransferase; Validated.
Length = 261
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 27 DETGIKRAAQK----IHSIIDKEVSAGIPSDRIVI 57
D+TGI + A+ +++K GIP + I I
Sbjct: 125 DDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYI 159
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 26.0 bits (58), Expect = 3.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 49 GIPSDRIVIGGFSQGGALALYSAL 72
G RI + G S GG LA AL
Sbjct: 67 GADPSRIAVAGDSAGGNLAAAVAL 90
>gnl|CDD|238287 cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that
can hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation," the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site. .
Length = 229
Score = 25.9 bits (57), Expect = 3.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 30 GIKRAAQKIHSIIDKEV---SAGIPSDRIVIGGFSQGGALAL 68
G A + +++ + E+ P +I++ G S GGALA
Sbjct: 102 GFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALAS 143
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 25.8 bits (57), Expect = 3.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 54 RIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86
R V G S GG +A A P ++ +V LS
Sbjct: 80 RAVFCGLSLGGLIAQGLAARRPDRVRALV-LSN 111
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 25.7 bits (57), Expect = 3.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 57 IGGFSQGGALALY 69
I GFSQG ALA
Sbjct: 104 ILGFSQGAALAAI 116
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 26.0 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 50 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 82
+ +RI I G S GG + L +A P+ A V
Sbjct: 470 VDPERIGITGGSYGGYMTLLAATKTPRFKAAVA 502
>gnl|CDD|241316 cd13162, PTB_RGS12, Regulator of G-protein signaling 12
Phosphotyrosine-binding (PTB) PH-like fold. RGS12
functions as a GTPase-activating protein and a
transcriptional repressor. It is thought to play a
role in tumorigenesis. RGS12 specifically interacts
with guanine nucleotide-binding protein G(i), alpha-1
subunit and guanine nucleotide-binding protein G(k)
subunit alpha. RGS proteins are multi-functional,
GTPase-accelerating proteins that promote GTP
hydrolysis by the alpha subunit of heterotrimeric G
proteins, thereby inactivating the G protein and
rapidly switching off G protein-coupled receptor
signalling pathways. Upon activation by GPCRs,
heterotrimeric G proteins exchange GDP for GTP, are
released from the receptor, and dissociate into free,
active GTP-bound alpha subunit and beta-gamma dimer,
both of which activate downstream effectors. The
response is terminated upon GTP hydrolysis by the alpha
subunit, which can then bind the beta-gamma dimer and
the receptor. RGS proteins markedly reduce the lifespan
of GTP-bound alpha subunits by stabilizing the G
protein transition state. PTB domains have a common
PH-like fold and are found in various eukaryotic
signaling molecules. This domain was initially shown to
binds peptides with a NPXY motif with differing
requirements for phosphorylation of the tyrosine,
although more recent studies have found that some types
of PTB domains can bind to peptides lack tyrosine
residues altogether. In contrast to SH2 domains, which
recognize phosphotyrosine and adjacent carboxy-terminal
residues, PTB-domain binding specificity is conferred
by residues amino-terminal to the phosphotyrosine. PTB
domains are classified into three groups:
phosphotyrosine-dependent Shc-like,
phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains. This
cd is part of the Dab-like subgroup.
Length = 130
Score = 25.4 bits (56), Expect = 4.4
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 15/50 (30%)
Query: 33 RAAQKIHSIIDKEVSAG---IPSDRIVIGGFSQGGALALYSALTYPKKLA 79
RA QKIHS++ +V + DR GG LA Y A +KLA
Sbjct: 35 RAEQKIHSLVLMKVMHDSVQLCDDR--------GGVLATYPA----EKLA 72
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 25.4 bits (56), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 51 PSDRIVIGGFSQGGALALYSA 71
P D +V+GG G A A+Y+A
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAA 232
>gnl|CDD|114306 pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine
proteases have been found in Streptomyces species.
Length = 448
Score = 25.5 bits (55), Expect = 5.2
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 12 PSWFDLISLDV-NAKEDETGIKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYS 70
P+ D LD+ A D+ I +A + ++S + I GG S+GG A Y
Sbjct: 104 PAPADWSKLDIWQAASDQHRIFKALKPLYS-----------KNWISTGG-SKGGMTATYY 151
Query: 71 ALTYPKKLAGVVA 83
YP+ + GVVA
Sbjct: 152 ERFYPRDMDGVVA 164
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 25.5 bits (56), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 52 SDRIVIGGFSQGGALALYSALTYPKKLAGVV 82
D+I + G QGG +L A YP K+ +V
Sbjct: 135 LDQISLLGICQGGTFSLCYAALYPDKIKNLV 165
>gnl|CDD|236764 PRK10808, PRK10808, outer membrane protein A; Reviewed.
Length = 351
Score = 25.4 bits (56), Expect = 5.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 32 KRAAQKIHSIIDKEVSAGIPSDRIVIGG 59
KRA S++D VS GIP+D+I G
Sbjct: 281 KRA----QSVVDYLVSKGIPADKISARG 304
>gnl|CDD|239592 cd03515, Link_domain_TSG_6_like, This is the extracellular link
domain of the type found in human TSG-6. The link
domain is a hyaluronan (HA)-binding domain. TSG-6 is
the protein product of tumor necrosis factor-stimulated
gene-6. TSG-6 is up-regulated in inflammatory lesions
and in the ovary during ovulation. It has a strong
anti-inflammatory and chondroprotective effect in
models of acute inflammation and autoimmune arthritis
and plays an essential role in female fertility. Also
included in this group are the stabilins: stabilin-1
(FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2
functions as the major liver and lymph node-scavenging
receptor for HA and related glycosaminoglycans.
Stabilin-2 is a scavenger receptor with a broad range
of ligands including advanced glycation end (AGE)
products, acetylated low density lipoprotein and
procollagen peptides. In contrast, stabilin-1 does not
bind HA, but binds acetylated low density lipoprotein
and AGEs with lower affinity. As AGEs accumulate in
vascular tissues during aging and diabetes, these
receptors may be implicated in the pathologies of these
states. Both stabilins are present in the early
endocytic pathway in hepatic sinusoidal epithelium
associating with clathrin/AP-2. Stabilin-1 is expressed
in macrophages. Stabilin-2 is absent from the latter.
In macrophages: stabilin-1 is involved in trafficking
between early/sorting endosomes and the trans-Golgi
network. Stabilin-1 has also been implicated in
angiogenesis and possibly leucocyte trafficking. Both
stabilins bind gram-positive and gram-negative
bacteria. TSG-6 and stabilins contain a single link
module which supports high affinity binding to HA.
Length = 93
Score = 24.7 bits (54), Expect = 5.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 62 QGGALALYSALTYPKKLAGVVALSCWL 88
+G LA YS L+ ++L + + WL
Sbjct: 26 EGAHLATYSQLSAAQQLGFHLCAAGWL 52
>gnl|CDD|215801 pfam00223, PsaA_PsaB, Photosystem I psaA/psaB protein.
Length = 682
Score = 25.4 bits (56), Expect = 5.6
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 27 DETGIKRAAQKI-----HSIIDKEVSAGIPSDRIVIGGF----SQG--GALALYSALTYP 75
D T +K AQ + I++ +V G P +I G F + G L LY
Sbjct: 73 DPTHVKPIAQAVWPIFGQEILNTDVGGGFPGIQITSGLFQLWRAIGITSNLQLYQTAIGL 132
Query: 76 KKLAGVVALSCWLPMHKSFP 95
LA ++ + W HK+ P
Sbjct: 133 LILAALMLFAGWFHYHKAAP 152
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 25.2 bits (56), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 33 RAAQKIHSIIDKEVSAGIPSDRIVIGGFSQG 63
R ++H+I++ V+AG R++ GG +G
Sbjct: 288 RQVDRVHAIVEDAVAAGA---RLLTGGTYEG 315
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 25.4 bits (56), Expect = 5.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 46 VSAGIP--SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 85
+ A S+R I G S GG L++ LTYP +S
Sbjct: 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLIS 169
>gnl|CDD|224664 COG1750, COG1750, Archaeal serine proteases [General function
prediction only].
Length = 579
Score = 25.5 bits (56), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 45 EVSAGIPSDRIVIGGFSQGG--ALALYSALTY 74
+V + +D V+GG S GG +A+Y+AL
Sbjct: 100 DVYIAVEADSPVVGGPSAGGYMTVAIYAALMG 131
>gnl|CDD|225745 COG3204, COG3204, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 316
Score = 25.5 bits (56), Expect = 6.0
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 31 IKRAAQKIHSIIDKEVSAGIPSDRIVIGGFSQGGALALYSALTY 74
+A Q + + ++ + R I G A S+LTY
Sbjct: 50 WFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTY 93
>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional.
Length = 330
Score = 25.3 bits (56), Expect = 6.6
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 1 MPVTLNGGYPMPSWFD-LISLDVNAKEDETGIKRAAQK-IHSIIDKEVSAG--IPSD 53
+P T+ G YP P W I L K E + A + ++ AG IP D
Sbjct: 9 LPTTVVGSYPKPKWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVD 65
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 25.3 bits (55), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 49 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 82
+ ++ + G S GGA AL AL YP ++ ++
Sbjct: 97 ALDIEKAHLVGNSMGGATALNFALEYPDRIGKLI 130
>gnl|CDD|232846 TIGR00153, TIGR00153, TIGR00153 family protein. An apparent
homolog with a suggested function is Pit accessory
protein from Sinorhizobium meliloti, which may be
involved in phosphate (Pi) transport [Hypothetical
proteins, Conserved].
Length = 216
Score = 25.1 bits (55), Expect = 7.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 22 VNAKEDETGIKRAAQKIHSIIDKE 45
V E ET + A I I D E
Sbjct: 137 VEVIELETDLSLANDIIKEIKDLE 160
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 25.2 bits (55), Expect = 8.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 55 IVIGGFSQGGALALYSALTYPKK 77
I++ GF+ G+L Y+ TY +K
Sbjct: 246 IMVLGFTAAGSLCFYTFTTYMQK 268
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 24.9 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 3 VTLNGGYPMPSWFDLISLDVNAKEDETGIKRAAQKIHSI 41
V L P+ +D++SLDV + +G++ AA +
Sbjct: 86 VLLANRPPLS--YDVLSLDVGSTTPLSGVEGAADLAVPV 122
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase, Neisseria-type
subfamily. This model represents one of two related
families of proline iminopeptidase in the alpha/beta
fold hydrolase family. The fine specificities of the
various members, including both the range of short
peptides from which proline can be removed and whether
other amino acids such as alanine can be also removed,
may vary among members.
Length = 306
Score = 24.8 bits (54), Expect = 8.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 56 VIGGFSQGGALALYSALTYPKKLAGVV 82
V GG S G LAL A T+P+ + G+V
Sbjct: 99 VFGG-SWGSTLALAYAQTHPEVVTGLV 124
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 25.0 bits (55), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 47 SAGIPS--DRIVIGGFSQGGALALYSALTYPKKL 78
S +PS D +V+G GA LY+AL P L
Sbjct: 3 STILPSQFDVLVVGS----GAAGLYAALCLPSHL 32
>gnl|CDD|204080 pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C
terminal. This catalytic domain is found at the C
terminal of acyl-CoA thioester hydrolases and bile
acid-CoA:amino acid N-acetyltransferases (BAAT).
Length = 211
Score = 24.5 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 53 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 86
D+I + G S+GG LAL A ++ K+++ VV+++
Sbjct: 22 DKIGLLGISKGGELALSMA-SFLKQISAVVSING 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,092,570
Number of extensions: 435589
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 86
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)