BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11078
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV--KNVTFNTYSGLQHSS 55
G N + LQ HGDCDP+VP M+G LT LK V NVTF TY G+ HSS
Sbjct: 160 GGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSS 212
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH---SSNPEL 59
++ L AHG D +VPY S+ L + N T +Y GL H S++PE+
Sbjct: 214 IDVPVLVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGMLSTHPEV 264
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
Q HG D +V + W + T+S+LK F+++ + H
Sbjct: 172 ELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYH 213
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
L HGD D +VP + S+ L VK T YSG H
Sbjct: 217 LVVHGDADQVVPIEASGIASAAL---VKGSTLKIYSGAPH 253
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
L HGD D +VPY + S+ L VKN TY G H
Sbjct: 224 LVIHGDDDQVVPYADSGVLSAKL---VKNGKLITYKGAPH 260
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 203 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 242
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 14 LQAHGDCDPIVPYM-WGQLTSSLLKGFVKNVTFNTYSGLQH 53
L HGD D IVPY G L++ LL N TY G H
Sbjct: 220 LVMHGDDDQIVPYENSGVLSAKLL----PNGALKTYKGYPH 256
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
G+ +V + +G DP++ + SSL G+++N+T+ T S L + NP
Sbjct: 123 GDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTW-TLSNLCRNKNP 174
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 129 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 168
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 168 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 207
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 129 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 168
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 133 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 172
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 133 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 172
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 173
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 173
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 170 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 209
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 223
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 223
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 223
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 140 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 179
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 173
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
HG DP++ + S+L G+++N+T+ T S L + NP
Sbjct: 160 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNP 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,458,921
Number of Sequences: 62578
Number of extensions: 78499
Number of successful extensions: 145
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 22
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)