Query psy11078
Match_columns 86
No_of_seqs 131 out of 1067
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:27:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02230 Abhydrolase_2: Phosph 99.5 4.2E-14 9.2E-19 92.9 7.9 61 10-70 155-216 (216)
2 PRK11460 putative hydrolase; P 99.5 3.9E-13 8.5E-18 89.5 8.2 66 8-73 146-212 (232)
3 PF00326 Peptidase_S9: Prolyl 99.5 2.7E-13 5.8E-18 88.3 7.0 63 9-71 143-211 (213)
4 COG0400 Predicted esterase [Ge 99.3 1E-11 2.2E-16 82.2 7.9 64 6-70 142-206 (207)
5 COG1506 DAP2 Dipeptidyl aminop 99.3 1.3E-11 2.7E-16 92.2 7.8 68 5-72 546-619 (620)
6 PF03583 LIP: Secretory lipase 99.3 2.4E-11 5.3E-16 83.6 8.1 71 5-75 214-287 (290)
7 PRK10566 esterase; Provisional 99.3 3.3E-11 7.2E-16 79.6 7.9 61 10-70 186-249 (249)
8 KOG2112|consensus 99.2 2.4E-11 5.1E-16 80.1 5.9 59 10-68 144-203 (206)
9 PF01738 DLH: Dienelactone hyd 99.0 2.4E-09 5.1E-14 70.1 6.9 63 8-70 143-218 (218)
10 KOG1455|consensus 99.0 8.8E-10 1.9E-14 76.3 4.2 60 8-69 244-312 (313)
11 TIGR02821 fghA_ester_D S-formy 98.9 5.1E-09 1.1E-13 71.1 7.0 61 9-69 210-274 (275)
12 PRK10749 lysophospholipase L2; 98.9 5.6E-09 1.2E-13 72.3 6.8 63 7-69 256-329 (330)
13 PLN02442 S-formylglutathione h 98.8 2.9E-08 6.4E-13 67.8 7.4 63 8-70 215-281 (283)
14 PRK13604 luxD acyl transferase 98.8 1.7E-08 3.6E-13 70.4 6.1 59 9-69 201-259 (307)
15 PHA02857 monoglyceride lipase; 98.8 2.3E-08 4.9E-13 66.9 6.5 59 8-69 207-273 (276)
16 PLN02298 hydrolase, alpha/beta 98.8 3.5E-08 7.5E-13 68.0 6.8 64 8-73 249-321 (330)
17 PLN02385 hydrolase; alpha/beta 98.7 3.6E-08 7.7E-13 68.7 6.6 62 8-71 277-347 (349)
18 PLN02652 hydrolase; alpha/beta 98.7 4.3E-08 9.4E-13 70.1 6.3 63 7-71 321-389 (395)
19 TIGR01607 PST-A Plasmodium sub 98.6 1.5E-07 3.3E-12 65.6 6.6 58 8-67 268-331 (332)
20 COG2267 PldB Lysophospholipase 98.6 2.5E-07 5.4E-12 64.0 6.6 64 5-71 223-296 (298)
21 PRK10162 acetyl esterase; Prov 98.6 3.8E-07 8.2E-12 63.3 7.3 60 10-71 248-317 (318)
22 TIGR03611 RutD pyrimidine util 98.5 3.9E-07 8.6E-12 59.0 6.1 56 8-67 196-256 (257)
23 TIGR01249 pro_imino_pep_1 prol 98.5 4.9E-07 1.1E-11 61.9 6.3 56 10-69 248-305 (306)
24 PRK11071 esterase YqiA; Provis 98.5 5.1E-07 1.1E-11 58.6 5.9 54 7-67 133-189 (190)
25 TIGR03343 biphenyl_bphD 2-hydr 98.4 5.5E-07 1.2E-11 60.1 5.8 56 8-67 221-281 (282)
26 TIGR01738 bioH putative pimelo 98.4 5.5E-07 1.2E-11 57.6 5.5 46 8-57 186-231 (245)
27 PF08840 BAAT_C: BAAT / Acyl-C 98.4 1E-06 2.3E-11 58.2 6.8 50 7-56 112-164 (213)
28 PRK10115 protease 2; Provision 98.4 1E-06 2.2E-11 66.9 7.2 65 8-72 603-678 (686)
29 KOG2100|consensus 98.4 1.3E-06 2.9E-11 67.0 7.3 60 13-72 685-750 (755)
30 TIGR03056 bchO_mg_che_rel puta 98.4 1.2E-06 2.6E-11 57.9 6.1 55 8-66 218-277 (278)
31 PF12695 Abhydrolase_5: Alpha/ 98.3 1.4E-06 3E-11 52.7 5.3 44 8-54 102-145 (145)
32 COG1647 Esterase/lipase [Gener 98.3 5.2E-07 1.1E-11 60.5 3.6 62 4-67 175-242 (243)
33 PLN02679 hydrolase, alpha/beta 98.3 2.7E-06 6E-11 59.7 7.2 61 8-68 290-356 (360)
34 PLN02824 hydrolase, alpha/beta 98.3 1.5E-06 3.3E-11 58.7 5.5 57 8-68 232-293 (294)
35 KOG1552|consensus 98.3 9E-07 2E-11 60.3 4.1 61 8-71 190-254 (258)
36 TIGR02427 protocat_pcaD 3-oxoa 98.3 3.1E-06 6.8E-11 54.1 6.2 46 8-57 191-236 (251)
37 COG0412 Dienelactone hydrolase 98.2 5.5E-06 1.2E-10 55.7 7.0 66 6-71 154-235 (236)
38 PF07859 Abhydrolase_3: alpha/ 98.2 1.4E-06 3E-11 56.3 3.7 48 7-56 163-210 (211)
39 PF08386 Abhydrolase_4: TAP-li 98.2 4.7E-06 1E-10 49.5 5.7 55 10-68 34-93 (103)
40 PRK07581 hypothetical protein; 98.2 5.6E-06 1.2E-10 57.3 6.7 60 8-71 273-338 (339)
41 PRK10673 acyl-CoA esterase; Pr 98.2 4.4E-06 9.5E-11 54.8 6.0 57 8-68 193-254 (255)
42 PRK00175 metX homoserine O-ace 98.2 1.1E-05 2.3E-10 57.1 8.1 63 8-70 307-375 (379)
43 TIGR02240 PHA_depoly_arom poly 98.2 6.7E-06 1.4E-10 55.2 6.6 58 8-70 205-267 (276)
44 PRK00870 haloalkane dehalogena 98.2 3.6E-06 7.9E-11 57.2 5.4 61 7-69 236-301 (302)
45 PRK05077 frsA fermentation/res 98.2 5.9E-06 1.3E-10 59.5 6.7 59 8-70 353-413 (414)
46 PRK03592 haloalkane dehalogena 98.2 5.4E-06 1.2E-10 56.1 6.1 61 8-71 226-291 (295)
47 PLN02965 Probable pheophorbida 98.2 7.3E-06 1.6E-10 54.5 6.6 46 8-57 191-236 (255)
48 PF12697 Abhydrolase_6: Alpha/ 98.1 6.3E-06 1.4E-10 51.8 5.2 45 9-57 175-219 (228)
49 KOG3043|consensus 98.1 1.9E-05 4E-10 53.2 7.5 63 8-70 162-241 (242)
50 KOG4391|consensus 98.1 6.2E-06 1.3E-10 55.8 5.0 65 8-74 219-287 (300)
51 PRK10349 carboxylesterase BioH 98.1 8.8E-06 1.9E-10 53.8 5.6 46 8-57 194-239 (256)
52 COG1073 Hydrolases of the alph 98.1 1.1E-05 2.5E-10 53.3 5.8 58 11-70 233-298 (299)
53 PRK05371 x-prolyl-dipeptidyl a 98.1 2.2E-05 4.8E-10 60.5 7.7 65 8-73 453-523 (767)
54 PRK06765 homoserine O-acetyltr 98.1 2.7E-05 6E-10 55.8 7.7 61 8-68 321-387 (389)
55 PLN02872 triacylglycerol lipas 98.0 2.6E-05 5.7E-10 56.0 7.5 65 6-73 321-393 (395)
56 PRK06489 hypothetical protein; 98.0 2E-05 4.3E-10 55.3 6.3 59 8-70 290-358 (360)
57 PF05448 AXE1: Acetyl xylan es 98.0 1.4E-05 3E-10 56.0 5.4 59 8-69 260-320 (320)
58 COG0657 Aes Esterase/lipase [L 98.0 3.4E-05 7.3E-10 53.0 7.0 56 10-67 245-308 (312)
59 TIGR01392 homoserO_Ac_trn homo 98.0 3.6E-05 7.8E-10 53.7 7.1 59 8-66 286-350 (351)
60 TIGR01250 pro_imino_pep_2 prol 98.0 2.9E-05 6.3E-10 50.8 6.1 54 8-66 229-287 (288)
61 TIGR01836 PHA_synth_III_C poly 97.9 2.1E-05 4.5E-10 54.9 5.2 58 8-68 284-349 (350)
62 PRK14875 acetoin dehydrogenase 97.9 2.7E-05 5.9E-10 53.9 5.5 53 8-67 312-369 (371)
63 PRK03204 haloalkane dehalogena 97.9 2.9E-05 6.4E-10 52.8 5.3 53 10-66 227-285 (286)
64 KOG4667|consensus 97.9 1.9E-05 4.1E-10 53.2 4.1 48 6-57 195-242 (269)
65 KOG1454|consensus 97.9 4.7E-05 1E-09 53.4 6.2 57 9-69 263-324 (326)
66 PF00561 Abhydrolase_1: alpha/ 97.9 5.5E-05 1.2E-09 48.3 6.0 46 8-57 173-218 (230)
67 PLN03087 BODYGUARD 1 domain co 97.9 5.6E-05 1.2E-09 55.7 6.6 45 8-56 416-460 (481)
68 PRK08775 homoserine O-acetyltr 97.9 4.1E-05 8.8E-10 53.3 5.5 60 7-69 274-339 (343)
69 PLN02578 hydrolase 97.8 6.7E-05 1.5E-09 52.5 6.2 55 8-67 294-353 (354)
70 PLN03084 alpha/beta hydrolase 97.8 9.9E-05 2.1E-09 52.8 6.7 55 8-67 323-382 (383)
71 PRK07868 acyl-CoA synthetase; 97.6 0.00015 3.3E-09 57.1 6.4 63 7-73 294-365 (994)
72 TIGR03695 menH_SHCHC 2-succiny 97.6 0.00015 3.2E-09 46.1 4.5 54 8-66 192-250 (251)
73 COG4099 Predicted peptidase [G 97.6 3.1E-05 6.8E-10 54.4 1.4 62 7-68 312-384 (387)
74 PF06821 Ser_hydrolase: Serine 97.5 0.00052 1.1E-08 44.1 6.1 53 10-67 114-170 (171)
75 COG3208 GrsT Predicted thioest 97.5 0.00073 1.6E-08 45.9 6.8 63 5-71 171-234 (244)
76 PRK11126 2-succinyl-6-hydroxy- 97.5 0.00052 1.1E-08 44.7 6.0 51 8-68 186-241 (242)
77 PLN02511 hydrolase 97.4 0.00026 5.7E-09 50.4 4.8 60 8-71 296-367 (388)
78 KOG2984|consensus 97.4 0.00014 3.1E-09 48.8 3.1 58 7-68 213-275 (277)
79 TIGR01840 esterase_phb esteras 97.4 0.00019 4.2E-09 46.8 3.5 31 9-39 167-197 (212)
80 COG1505 Serine proteases of th 97.4 0.00081 1.8E-08 50.8 6.8 63 8-70 578-647 (648)
81 PLN02894 hydrolase, alpha/beta 97.4 0.00086 1.9E-08 48.1 6.8 61 8-72 323-388 (402)
82 PF05705 DUF829: Eukaryotic pr 97.3 0.00061 1.3E-08 45.3 5.3 51 7-57 175-225 (240)
83 PF07519 Tannase: Tannase and 97.3 0.00055 1.2E-08 50.4 5.4 64 10-73 353-431 (474)
84 PF05728 UPF0227: Uncharacteri 97.3 0.00087 1.9E-08 43.8 5.8 54 7-67 131-187 (187)
85 PRK05855 short chain dehydroge 97.3 0.00046 1E-08 50.3 4.8 57 8-69 231-292 (582)
86 KOG2551|consensus 97.3 0.0011 2.4E-08 44.6 5.7 61 6-71 159-222 (230)
87 PRK10439 enterobactin/ferric e 97.2 0.0018 3.8E-08 46.9 7.0 58 9-68 348-408 (411)
88 TIGR03100 hydr1_PEP hydrolase, 97.2 0.0012 2.5E-08 44.9 5.4 57 9-67 206-273 (274)
89 PLN02980 2-oxoglutarate decarb 97.2 0.0019 4.1E-08 53.6 7.3 65 8-73 1566-1643(1655)
90 KOG2281|consensus 97.1 0.0017 3.7E-08 49.7 5.9 56 13-68 805-866 (867)
91 TIGR01849 PHB_depoly_PhaZ poly 97.1 0.001 2.2E-08 48.2 4.6 61 8-68 335-405 (406)
92 COG3458 Acetyl esterase (deace 97.1 0.0013 2.9E-08 45.7 4.9 60 8-70 257-318 (321)
93 PLN02211 methyl indole-3-aceta 97.0 0.0022 4.8E-08 43.5 5.8 55 10-69 211-266 (273)
94 PRK10985 putative hydrolase; P 97.0 0.001 2.3E-08 46.0 4.2 59 8-70 253-321 (324)
95 PF03959 FSH1: Serine hydrolas 97.0 0.003 6.4E-08 41.6 5.8 48 6-57 157-204 (212)
96 KOG1515|consensus 96.9 0.0027 5.8E-08 45.1 5.1 57 10-68 268-334 (336)
97 KOG4178|consensus 96.9 0.0042 9.2E-08 43.8 6.0 60 6-68 254-319 (322)
98 TIGR01838 PHA_synth_I poly(R)- 96.7 0.0036 7.9E-08 46.8 4.8 46 7-56 412-457 (532)
99 PF10142 PhoPQ_related: PhoPQ- 96.6 0.0076 1.6E-07 43.3 5.9 62 9-73 261-324 (367)
100 COG0596 MhpC Predicted hydrola 96.5 0.018 3.9E-07 35.9 6.4 48 7-57 218-265 (282)
101 COG2945 Predicted hydrolase of 96.3 0.0078 1.7E-07 40.0 3.9 54 9-67 148-205 (210)
102 KOG2382|consensus 96.1 0.012 2.7E-07 41.4 4.6 59 7-69 250-313 (315)
103 PF08538 DUF1749: Protein of u 96.1 0.0025 5.5E-08 44.6 1.1 61 9-69 231-297 (303)
104 PF06500 DUF1100: Alpha/beta h 96.0 0.021 4.5E-07 41.7 5.6 60 7-70 349-410 (411)
105 TIGR01839 PHA_synth_II poly(R) 95.9 0.016 3.4E-07 43.7 4.8 44 7-54 438-481 (560)
106 KOG3253|consensus 95.5 0.04 8.6E-07 42.3 5.3 45 9-56 303-347 (784)
107 PF11144 DUF2920: Protein of u 95.3 0.14 3.1E-06 37.3 7.5 40 9-48 292-331 (403)
108 COG0627 Predicted esterase [Ge 95.3 0.053 1.2E-06 38.2 5.2 64 9-72 246-314 (316)
109 PF02273 Acyl_transf_2: Acyl t 94.7 0.039 8.6E-07 38.1 3.1 58 8-67 193-250 (294)
110 KOG4409|consensus 94.6 0.14 3E-06 36.8 5.8 48 7-57 300-347 (365)
111 PRK04940 hypothetical protein; 94.6 0.16 3.4E-06 33.3 5.6 50 12-67 126-178 (180)
112 PF10503 Esterase_phd: Esteras 94.5 0.057 1.2E-06 36.2 3.6 32 8-39 167-198 (220)
113 PF02129 Peptidase_S15: X-Pro 93.9 0.17 3.6E-06 34.2 4.9 46 7-54 225-271 (272)
114 PF06850 PHB_depo_C: PHB de-po 93.5 0.16 3.5E-06 33.7 4.1 59 9-68 133-201 (202)
115 KOG2237|consensus 93.4 0.38 8.3E-06 37.2 6.4 63 11-73 633-709 (712)
116 COG3545 Predicted esterase of 93.3 0.21 4.5E-06 32.7 4.4 31 9-39 116-146 (181)
117 PF11339 DUF3141: Protein of u 93.2 0.15 3.3E-06 38.5 4.1 46 8-53 295-347 (581)
118 COG3243 PhaC Poly(3-hydroxyalk 92.9 0.22 4.9E-06 36.6 4.5 44 7-54 327-370 (445)
119 COG0429 Predicted hydrolase of 92.8 0.12 2.6E-06 36.9 2.9 60 8-70 272-341 (345)
120 KOG2521|consensus 92.6 0.6 1.3E-05 33.5 6.2 65 10-74 225-295 (350)
121 PF06028 DUF915: Alpha/beta hy 92.4 0.19 4.2E-06 34.4 3.5 62 5-66 179-252 (255)
122 PF10230 DUF2305: Uncharacteri 92.1 0.46 1E-05 32.4 5.1 45 10-55 221-265 (266)
123 PTZ00472 serine carboxypeptida 91.7 0.78 1.7E-05 33.8 6.1 59 10-68 364-458 (462)
124 COG2382 Fes Enterochelin ester 91.5 0.83 1.8E-05 32.2 5.7 50 14-66 243-295 (299)
125 PLN02213 sinapoylglucose-malat 90.9 0.96 2.1E-05 31.6 5.7 59 10-68 233-316 (319)
126 PF10605 3HBOH: 3HB-oligomer h 90.6 0.29 6.3E-06 37.6 3.1 46 10-55 555-604 (690)
127 COG2021 MET2 Homoserine acetyl 90.5 1.4 3E-05 31.9 6.2 57 8-67 304-366 (368)
128 PF00756 Esterase: Putative es 89.7 0.18 3.8E-06 33.2 1.2 58 8-66 181-251 (251)
129 PF00450 Peptidase_S10: Serine 89.1 0.74 1.6E-05 32.5 4.1 58 10-67 330-414 (415)
130 COG3571 Predicted hydrolase of 88.3 1.2 2.6E-05 29.3 4.3 46 7-57 139-184 (213)
131 PLN03016 sinapoylglucose-malat 88.3 1.5 3.3E-05 32.2 5.3 59 10-68 347-430 (433)
132 KOG4388|consensus 87.9 1.3 2.9E-05 34.3 4.8 46 10-57 787-832 (880)
133 PLN02209 serine carboxypeptida 86.5 2.3 5E-05 31.3 5.4 59 10-68 351-434 (437)
134 COG4757 Predicted alpha/beta h 84.9 3.1 6.8E-05 28.8 5.0 57 8-66 214-280 (281)
135 KOG1838|consensus 84.2 1.6 3.6E-05 32.0 3.6 45 7-54 319-363 (409)
136 PF12146 Hydrolase_4: Putative 82.0 3.1 6.6E-05 23.3 3.5 43 9-56 15-57 (79)
137 COG2819 Predicted hydrolase of 81.3 6 0.00013 27.5 5.4 41 28-68 217-260 (264)
138 KOG1282|consensus 80.3 6.5 0.00014 29.3 5.6 59 11-69 364-448 (454)
139 COG1647 Esterase/lipase [Gener 79.6 3.4 7.3E-05 28.3 3.6 43 10-57 15-57 (243)
140 PF08357 SEFIR: SEFIR domain; 79.3 4.9 0.00011 24.6 4.1 39 11-50 1-40 (150)
141 PF09752 DUF2048: Uncharacteri 79.0 4 8.7E-05 29.4 4.0 39 13-56 292-330 (348)
142 PLN00021 chlorophyllase 78.2 4 8.6E-05 28.6 3.8 47 5-54 184-240 (313)
143 PF12695 Abhydrolase_5: Alpha/ 78.0 7.8 0.00017 22.7 4.7 51 12-67 1-54 (145)
144 PF01674 Lipase_2: Lipase (cla 76.1 8.7 0.00019 25.7 4.8 60 10-72 1-72 (219)
145 KOG2624|consensus 76.1 5.1 0.00011 29.4 4.0 62 7-69 329-398 (403)
146 KOG3975|consensus 76.0 6.7 0.00014 27.5 4.3 44 11-57 243-286 (301)
147 COG1770 PtrB Protease II [Amin 74.2 7.8 0.00017 30.3 4.6 47 8-54 607-656 (682)
148 PF14714 KH_dom-like: KH-domai 72.5 13 0.00028 20.9 4.3 39 8-46 36-78 (80)
149 COG4814 Uncharacterized protei 72.0 20 0.00042 25.2 5.8 61 7-67 213-285 (288)
150 TIGR03100 hydr1_PEP hydrolase, 71.2 27 0.00058 23.5 6.4 43 10-52 26-69 (274)
151 COG4287 PqaA PhoPQ-activated p 70.3 4.2 9E-05 30.1 2.3 47 8-57 327-373 (507)
152 PF12715 Abhydrolase_7: Abhydr 69.3 1.8 4E-05 31.5 0.4 40 8-50 304-343 (390)
153 TIGR00976 /NonD putative hydro 68.7 27 0.00059 26.2 6.4 62 8-73 230-307 (550)
154 PF04083 Abhydro_lipase: Parti 68.5 4.4 9.6E-05 21.8 1.7 18 5-22 38-55 (63)
155 KOG4627|consensus 65.9 8.3 0.00018 26.4 2.9 57 9-69 206-267 (270)
156 COG3150 Predicted esterase [Ge 64.5 15 0.00032 24.2 3.8 48 13-67 137-187 (191)
157 PLN02606 palmitoyl-protein thi 63.2 52 0.0011 23.4 7.3 40 8-48 24-64 (306)
158 PF02606 LpxK: Tetraacyldisacc 63.0 27 0.00058 24.8 5.2 51 8-66 225-277 (326)
159 PRK10673 acyl-CoA esterase; Pr 61.0 42 0.0009 21.6 6.0 55 8-68 14-77 (255)
160 PRK10749 lysophospholipase L2; 58.9 57 0.0012 22.5 6.3 42 9-53 53-94 (330)
161 COG2267 PldB Lysophospholipase 58.6 34 0.00074 23.7 5.1 55 11-70 35-101 (298)
162 PF06342 DUF1057: Alpha/beta h 57.6 15 0.00033 26.0 3.1 29 9-37 211-239 (297)
163 PF13676 TIR_2: TIR domain; PD 57.5 7.2 0.00016 22.1 1.4 27 13-43 1-27 (102)
164 PRK10985 putative hydrolase; P 57.0 62 0.0013 22.3 7.9 42 10-52 58-99 (324)
165 PF06500 DUF1100: Alpha/beta h 55.0 13 0.00028 27.5 2.6 62 7-69 186-255 (411)
166 PF02089 Palm_thioest: Palmito 54.2 18 0.0004 25.3 3.1 34 7-40 2-35 (279)
167 PF08538 DUF1749: Protein of u 54.2 35 0.00076 24.2 4.5 61 10-70 33-101 (303)
168 KOG4840|consensus 53.7 63 0.0014 22.5 5.5 64 8-72 223-292 (299)
169 cd03409 Chelatase_Class_II Cla 52.0 33 0.00072 19.2 3.6 27 13-39 3-29 (101)
170 PF10137 TIR-like: Predicted n 51.1 55 0.0012 20.0 5.4 40 13-57 2-42 (125)
171 COG4553 DepA Poly-beta-hydroxy 49.7 21 0.00046 25.8 2.9 63 8-71 337-409 (415)
172 PF02244 Propep_M14: Carboxype 49.1 14 0.00031 19.8 1.7 30 18-47 34-63 (74)
173 PLN02652 hydrolase; alpha/beta 48.2 1E+02 0.0022 22.3 6.4 41 9-52 135-175 (395)
174 PF06962 rRNA_methylase: Putat 47.4 23 0.0005 22.2 2.5 30 40-71 85-115 (140)
175 KOG2872|consensus 46.4 31 0.00068 24.7 3.3 52 14-68 295-352 (359)
176 PF00975 Thioesterase: Thioest 45.7 72 0.0016 20.3 4.8 58 10-68 168-227 (229)
177 TIGR01357 aroB 3-dehydroquinat 45.1 1.1E+02 0.0023 21.5 6.0 55 11-68 21-76 (344)
178 PF06057 VirJ: Bacterial virul 44.8 83 0.0018 20.9 4.9 49 10-68 139-187 (192)
179 COG2222 AgaS Predicted phospho 44.1 1.2E+02 0.0026 21.8 6.1 38 7-47 247-284 (340)
180 TIGR00583 mre11 DNA repair pro 43.4 19 0.00042 26.3 2.0 17 8-24 108-124 (405)
181 PLN02633 palmitoyl protein thi 43.1 1.2E+02 0.0027 21.7 7.3 43 6-49 21-64 (314)
182 PRK01906 tetraacyldisaccharide 42.9 64 0.0014 23.1 4.5 41 11-59 244-285 (338)
183 cd06259 YdcF-like YdcF-like. Y 42.8 75 0.0016 19.1 4.8 58 11-68 35-92 (150)
184 PRK05077 frsA fermentation/res 40.8 78 0.0017 23.0 4.8 60 9-69 192-259 (414)
185 PRK00923 sirohydrochlorin coba 40.0 62 0.0014 19.2 3.6 27 13-40 5-31 (126)
186 KOG3101|consensus 38.7 81 0.0018 21.8 4.2 47 10-56 215-263 (283)
187 COG0407 HemE Uroporphyrinogen- 37.6 31 0.00067 24.9 2.3 53 14-67 286-343 (352)
188 PF12122 DUF3582: Protein of u 37.3 57 0.0012 19.2 3.0 25 25-49 9-33 (101)
189 PF11394 DUF2875: Protein of u 37.2 1.1E+02 0.0023 23.1 4.9 63 8-70 77-141 (451)
190 COG2908 Uncharacterized protei 37.1 50 0.0011 22.7 3.1 22 8-31 103-124 (237)
191 PRK00652 lpxK tetraacyldisacch 37.1 1.1E+02 0.0023 21.8 4.9 45 12-64 233-279 (325)
192 COG2939 Carboxypeptidase C (ca 37.0 46 0.001 25.3 3.1 63 5-68 420-490 (498)
193 KOG1717|consensus 36.9 48 0.001 23.6 3.0 30 42-71 217-249 (343)
194 PRK09061 D-glutamate deacylase 36.4 1.1E+02 0.0025 22.9 5.1 40 10-49 245-284 (509)
195 PF05577 Peptidase_S28: Serine 35.9 54 0.0012 23.7 3.3 41 10-57 376-416 (434)
196 PF13709 DUF4159: Domain of un 34.9 78 0.0017 20.9 3.7 36 5-40 48-83 (207)
197 PF13811 DUF4186: Domain of un 34.7 19 0.00042 21.8 0.7 25 59-83 36-60 (111)
198 PRK14581 hmsF outer membrane N 34.4 84 0.0018 24.8 4.3 33 8-40 46-85 (672)
199 cd03416 CbiX_SirB_N Sirohydroc 33.9 82 0.0018 17.7 3.4 26 13-39 3-28 (101)
200 PF05576 Peptidase_S37: PS-10 33.5 97 0.0021 23.3 4.3 52 10-67 351-412 (448)
201 PF12913 SH3_6: SH3 domain of 33.5 28 0.00061 18.3 1.2 18 6-23 22-39 (54)
202 PRK00002 aroB 3-dehydroquinate 33.4 1.8E+02 0.0038 20.7 6.1 54 12-68 33-87 (358)
203 PRK14582 pgaB outer membrane N 32.7 73 0.0016 25.1 3.7 33 8-40 46-85 (671)
204 PF02629 CoA_binding: CoA bind 32.6 97 0.0021 17.5 3.5 26 24-49 70-95 (96)
205 PRK10834 vancomycin high tempe 32.3 1.3E+02 0.0028 20.6 4.5 11 31-41 101-111 (239)
206 cd03413 CbiK_C Anaerobic cobal 32.1 1.1E+02 0.0024 17.8 6.1 35 13-49 4-39 (103)
207 PRK10877 protein disulfide iso 32.0 93 0.002 20.8 3.8 35 20-54 115-150 (232)
208 cd03415 CbiX_CbiC Archaeal sir 31.2 1E+02 0.0022 18.7 3.6 25 13-38 4-28 (125)
209 PF12740 Chlorophyllase2: Chlo 30.8 1.8E+02 0.004 20.1 6.6 62 8-72 14-80 (259)
210 TIGR03594 GTPase_EngA ribosome 30.7 1.7E+02 0.0036 21.0 5.1 40 6-45 383-426 (429)
211 PF00532 Peripla_BP_1: Peripla 30.7 1.7E+02 0.0037 19.7 5.6 31 13-43 122-152 (279)
212 PRK00093 GTP-binding protein D 30.6 1.6E+02 0.0035 21.1 5.1 41 7-47 384-428 (435)
213 PF06441 EHN: Epoxide hydrolas 30.6 17 0.00036 21.8 0.0 18 4-21 86-103 (112)
214 COG3509 LpqC Poly(3-hydroxybut 29.8 19 0.00042 25.6 0.2 31 40-70 261-308 (312)
215 PF12531 DUF3731: DNA-K relate 29.4 54 0.0012 22.6 2.3 25 16-40 149-173 (249)
216 PF02698 DUF218: DUF218 domain 29.3 94 0.002 18.8 3.3 57 12-68 39-95 (155)
217 cd03414 CbiX_SirB_C Sirohydroc 28.8 1E+02 0.0022 17.8 3.3 26 13-39 4-29 (117)
218 PF05853 DUF849: Prokaryotic p 28.5 1.9E+02 0.0042 19.9 4.9 25 25-49 124-148 (272)
219 KOG2182|consensus 28.4 2.5E+02 0.0055 21.6 5.7 68 8-76 83-169 (514)
220 PLN02757 sirohydrochlorine fer 28.0 62 0.0013 20.4 2.3 25 13-38 17-41 (154)
221 cd03557 L-arabinose_isomerase 27.4 2E+02 0.0043 21.8 5.1 57 8-68 89-160 (484)
222 PF10340 DUF2424: Protein of u 27.4 2.1E+02 0.0044 21.0 5.1 57 9-67 301-364 (374)
223 PF04430 DUF498: Protein of un 27.3 1.4E+02 0.003 17.5 3.6 30 13-46 57-86 (110)
224 PF10691 DUF2497: Protein of u 27.3 55 0.0012 18.2 1.7 51 20-71 1-56 (73)
225 cd08199 EEVS 2-epi-5-epi-valio 27.2 2.4E+02 0.0051 20.2 6.0 54 12-68 28-82 (354)
226 PF07755 DUF1611: Protein of u 26.4 1.5E+02 0.0033 21.0 4.2 39 9-47 110-148 (301)
227 KOG2310|consensus 25.8 44 0.00095 26.0 1.5 19 6-24 116-134 (646)
228 cd03412 CbiK_N Anaerobic cobal 25.8 1.3E+02 0.0027 18.1 3.3 27 13-40 4-30 (127)
229 PRK02929 L-arabinose isomerase 25.6 3E+02 0.0064 21.0 5.8 57 8-68 95-166 (499)
230 TIGR00666 PBP4 D-alanyl-D-alan 25.6 1.8E+02 0.0039 20.7 4.5 30 13-42 56-85 (345)
231 COG1739 Uncharacterized conser 25.5 1.2E+02 0.0027 20.0 3.5 52 22-73 140-196 (203)
232 PRK13237 tyrosine phenol-lyase 25.3 71 0.0015 24.0 2.5 27 27-56 323-349 (460)
233 PLN02924 thymidylate kinase 24.7 2.2E+02 0.0047 18.9 6.7 50 4-53 8-57 (220)
234 PF05595 DUF771: Domain of unk 24.5 59 0.0013 18.6 1.6 28 44-71 60-88 (91)
235 TIGR03853 matur_matur probable 24.4 1.5E+02 0.0032 16.8 4.6 34 32-69 23-57 (77)
236 COG0429 Predicted hydrolase of 24.4 2.9E+02 0.0062 20.2 7.9 67 6-73 70-148 (345)
237 PF03618 Kinase-PPPase: Kinase 24.4 1.1E+02 0.0023 21.2 3.1 37 46-82 100-152 (255)
238 cd04436 DEP_fRgd2 DEP (Disheve 24.0 45 0.00098 19.2 1.0 22 58-79 31-52 (84)
239 PF09587 PGA_cap: Bacterial ca 23.9 1.9E+02 0.004 19.3 4.1 33 11-43 186-219 (250)
240 COG3233 Predicted deacetylase 23.5 2.5E+02 0.0055 19.2 5.5 61 12-73 5-67 (233)
241 TIGR01616 nitro_assoc nitrogen 23.4 1.8E+02 0.004 17.6 4.6 29 27-57 12-40 (126)
242 PF03960 ArsC: ArsC family; I 23.2 1.6E+02 0.0035 16.9 4.8 39 27-67 7-46 (110)
243 COG0420 SbcD DNA repair exonuc 23.1 58 0.0012 23.2 1.6 21 9-29 74-94 (390)
244 COG1535 EntB Isochorismate hyd 23.1 1.7E+02 0.0038 19.6 3.7 43 8-50 27-81 (218)
245 KOG2541|consensus 23.1 2.9E+02 0.0062 19.7 6.6 46 11-57 24-71 (296)
246 PRK13364 protocatechuate 4,5-d 23.0 1.2E+02 0.0026 21.0 3.2 33 25-57 97-129 (278)
247 PF13170 DUF4003: Protein of u 23.0 20 0.00044 25.1 -0.7 55 14-71 187-252 (297)
248 TIGR02803 ExbD_1 TonB system t 22.4 1.8E+02 0.0039 17.1 3.7 6 45-50 88-93 (122)
249 PRK03003 GTP-binding protein D 22.0 2.7E+02 0.0059 20.5 5.0 39 7-47 422-464 (472)
250 PF00542 Ribosomal_L12: Riboso 21.9 1.5E+02 0.0033 16.1 2.9 22 24-45 46-67 (68)
251 KOG1551|consensus 21.6 1.5E+02 0.0031 21.3 3.3 39 13-56 309-347 (371)
252 PF04055 Radical_SAM: Radical 21.3 1.8E+02 0.004 16.8 4.8 39 26-66 126-166 (166)
253 PF09370 TIM-br_sig_trns: TIM- 21.2 91 0.002 21.8 2.2 45 7-55 78-122 (268)
254 PHA02820 phospholipase-D-like 20.6 2.4E+02 0.0052 20.8 4.4 28 18-45 279-306 (424)
255 PRK11340 phosphodiesterase Yae 20.5 1.4E+02 0.0031 20.2 3.1 11 12-22 114-124 (271)
256 PF14084 DUF4264: Protein of u 20.4 80 0.0017 16.5 1.4 19 58-76 15-33 (52)
257 PF04921 XAP5: XAP5, circadian 20.1 1.4E+02 0.0031 20.5 3.0 16 40-55 98-113 (239)
258 COG2344 AT-rich DNA-binding pr 20.1 1.6E+02 0.0034 19.9 3.0 27 23-49 153-179 (211)
No 1
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.53 E-value=4.2e-14 Score=92.85 Aligned_cols=61 Identities=39% Similarity=0.686 Sum_probs=52.3
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhhh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENRA 70 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~ 70 (86)
++|+|++||..|++||++.++.+++.|++.+.+++++.|+|+||++.. ++.++.+||.+++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEISPEELRDLREFLEKHI 216 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS--HHHHHHHHHHHHHH-
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCHHHHHHHHHHHhhhC
Confidence 789999999999999999999999999999999999999999999999 9999999998753
No 2
>PRK11460 putative hydrolase; Provisional
Probab=99.46 E-value=3.9e-13 Score=89.53 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhhhcCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENRALSG 73 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~~~~ 73 (86)
...+|+|++||.+|++||++.++++++.|++.|.+++++.|++++|.+.. +++++.+||.+.++..
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~~~ 212 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVPKR 212 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcchh
Confidence 35789999999999999999999999999999999999999999999999 9999999999887543
No 3
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.46 E-value=2.7e-13 Score=88.33 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhc
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRAL 71 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~ 71 (86)
..+|+|++||..|++||+.++.+++++|++.|.++++.+||+.+|++.. ..+.+.+||++.+.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999998773 47889999999876
No 4
>COG0400 Predicted esterase [General function prediction only]
Probab=99.32 E-value=1e-11 Score=82.21 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhhh
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENRA 70 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~ 70 (86)
.....+|||+.||..|++||+..+.++.+.|++.|.+++++.|+ +||++.. +++++.+|+.+..
T Consensus 142 ~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~~~~~~~wl~~~~ 206 (207)
T COG0400 142 PDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPPEELEAARSWLANTL 206 (207)
T ss_pred cccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999999999999999999 8999999 9999999998653
No 5
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.29 E-value=1.3e-11 Score=92.20 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=62.0
Q ss_pred CCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhcC
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRALS 72 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~~ 72 (86)
..-+..+|+|++||..|..||.+++..++++|+..|+++++++||+.+|++.. .+..+.+|+.+++..
T Consensus 546 ~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 546 YADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred hhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 34578899999999999999999999999999999999999999999999985 478899999998763
No 6
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.27 E-value=2.4e-11 Score=83.62 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=64.7
Q ss_pred CCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC-CCeEEEEeCCCCCCChH--HHHHHHHHHHhhhcCCCc
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV-KNVTFNTYSGLQHSSNP--ELKQVSTRLENRALSGNI 75 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g-~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~~~~~~~ 75 (86)
.+..++.|+||+||..|.+||+..+.++++.+|+.| .+|+|+.|++.+|.... ...+...||.+++.+++.
T Consensus 214 ~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 214 GDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHHHHHHHHHHHCCCCC
Confidence 455778999999999999999999999999999999 79999999999998776 788999999999997754
No 7
>PRK10566 esterase; Provisional
Probab=99.26 E-value=3.3e-11 Score=79.61 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCC--CeEEEEeCCCCCCChH-HHHHHHHHHHhhh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK--NVTFNTYSGLQHSSNP-ELKQVSTRLENRA 70 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~--~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~ 70 (86)
+.|+|++||++|++||++.++.+++.++++|. ++++..|+|.+|.+.. ++.++..||++.+
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRITPEALDAGVAFFRQHL 249 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccCHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999886 4899999999999988 9999999998753
No 8
>KOG2112|consensus
Probab=99.23 E-value=2.4e-11 Score=80.09 Aligned_cols=59 Identities=37% Similarity=0.742 Sum_probs=57.3
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
.+|+++.||+.|++||...++...+.|+..+..++|+.|+|.+|.... +++++..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSPQELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999 99999999986
No 9
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.98 E-value=2.4e-09 Score=70.09 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=48.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-------------HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-------------ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-------------~~~~v~~wl~~~~ 70 (86)
..+.|+++.+|+.|+.+|.+..+.+.+.|++.|.++++++|||.+|++.. ....+.+||+++|
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999999999999999873 2567888888764
No 10
>KOG1455|consensus
Probab=98.95 E-value=8.8e-10 Score=76.33 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=53.2
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---------HHHHHHHHHHhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---------ELKQVSTRLENR 69 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---------~~~~v~~wl~~~ 69 (86)
....|+|++||++|.|..+..++.+++..... +.++++|||+.|.+.. .+.||.+||.++
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999877654 8999999999998872 378999999875
No 11
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.92 E-value=5.1e-09 Score=71.07 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=55.3
Q ss_pred CCCcEEEeecCCCCccCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPY-MWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~-~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~~~ 69 (86)
..+|+|+.||..|++||. .+...+.+.|++.|.++++..|||.+|++.. .+.+.+.|..++
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYFIASFIADHLRHHAER 274 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchhHHHhHHHHHHHHHhh
Confidence 467999999999999999 6888999999999999999999999999986 688888888765
No 12
>PRK10749 lysophospholipase L2; Provisional
Probab=98.90 E-value=5.6e-09 Score=72.35 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=53.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC---CCeEEEEeCCCCCCChH--------HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV---KNVTFNTYSGLQHSSNP--------ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g---~~v~~~~y~g~~H~~~~--------~~~~v~~wl~~~ 69 (86)
...+.|+|++||+.|++||++.++.+++.+++++ .+.++++|||++|.+.. .++++..||.++
T Consensus 256 ~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 256 GDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred cCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 4568999999999999999999999999998765 35689999999998764 357788998763
No 13
>PLN02442 S-formylglutathione hydrolase
Probab=98.79 E-value=2.9e-08 Score=67.82 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCCCcEEEeecCCCCccChH-HHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYM-WGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~-~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~~~~ 70 (86)
..++|+|++||+.|+++|.. .++.+++.+++.|.++++++|||.+|.+.. -+++...|..+.+
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYFFIATFIDDHINHHAQAL 281 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999984 578899999999999999999999998775 3455555555443
No 14
>PRK13604 luxD acyl transferase; Provisional
Probab=98.79 E-value=1.7e-08 Score=70.37 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=48.6
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~~~ 69 (86)
.+.|+|++||..|++||++.++++++.++. .+.++++|||++|.+...+--+.+|.+..
T Consensus 201 l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~Ga~H~l~~~~~~~~~~~~~~ 259 (307)
T PRK13604 201 LDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIGSSHDLGENLVVLRNFYQSV 259 (307)
T ss_pred cCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCCCccccCcchHHHHHHHHHH
Confidence 569999999999999999999999998764 37899999999999998444445555543
No 15
>PHA02857 monoglyceride lipase; Provisional
Probab=98.78 E-value=2.3e-08 Score=66.94 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--------HHHHHHHHHHhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--------ELKQVSTRLENR 69 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--------~~~~v~~wl~~~ 69 (86)
..+.|+|++||+.|.++|++.++.+++.+.. ++++.+|+++||.+.. ..+++.+||.++
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999898877643 6899999999998773 367899999875
No 16
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.75 E-value=3.5e-08 Score=67.96 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---------HHHHHHHHHHhhhcCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---------ELKQVSTRLENRALSG 73 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---------~~~~v~~wl~~~~~~~ 73 (86)
..++|+|++||..|++||++.++.+++.+... +.++++|+|++|.+.. ..+++.+||.+.+...
T Consensus 249 ~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~ 321 (330)
T PLN02298 249 DVSIPFIVLHGSADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGK 321 (330)
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 56799999999999999999999998877532 5789999999999742 2567899999886543
No 17
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=98.74 E-value=3.6e-08 Score=68.67 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---------HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---------ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---------~~~~v~~wl~~~~~ 71 (86)
..+.|+|++||++|.++|+..++.+++.+... +.++++||++||.+.. .+.++.+||.++..
T Consensus 277 ~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 277 EVSLPLLILHGEADKVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred cCCCCEEEEEeCCCCccChHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999988877532 5789999999998863 24678999998753
No 18
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.70 E-value=4.3e-08 Score=70.09 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhc
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRAL 71 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~ 71 (86)
...+.|+|++||..|.++|++.++.+++.+... +.+++.|||++|.+.. .++++.+||..++.
T Consensus 321 ~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 321 KSVTVPFMVLHGTADRVTDPLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred ccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 356899999999999999999999988876542 5788899999998743 47889999998875
No 19
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.61 E-value=1.5e-07 Score=65.60 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~ 67 (86)
..+.|+|++||+.|++|+++.++.+++.+.. .+.++++|+|++|.+.. .++++.+||.
T Consensus 268 ~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 268 PKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 3479999999999999999998887776543 26788999999999875 3677888885
No 20
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.56 E-value=2.5e-07 Score=64.03 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=50.6
Q ss_pred CCCCCCCcEEEeecCCCCccC-hHHHHHHHHHHhcCCC-CeEEEEeCCCCCCChH--------HHHHHHHHHHhhhc
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVP-YMWGQLTSSLLKGFVK-NVTFNTYSGLQHSSNP--------ELKQVSTRLENRAL 71 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp-~~~~~~~~~~l~~~g~-~v~~~~y~g~~H~~~~--------~~~~v~~wl~~~~~ 71 (86)
.......|+|++||++|.+|+ .+...+++ ++.+. +++++.|+|+.|++.+ .++++.+||.+..+
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~~~~~~~~~~---~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVDNVEGLARFF---ERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCccccCcHHHHHHH---HhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 456789999999999999999 56555555 45554 4899999999999986 25678889887654
No 21
>PRK10162 acetyl esterase; Provisional
Probab=98.55 E-value=3.8e-07 Score=63.28 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=51.5
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------HHHHHHHHHHhhhc
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------ELKQVSTRLENRAL 71 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------~~~~v~~wl~~~~~ 71 (86)
-+|+|+++|+.|++. +.++.++++|+++|++++++.|+|..|++.. .++++..||.+.+.
T Consensus 248 lPp~~i~~g~~D~L~--de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 248 VPPCFIAGAEFDPLL--DDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCCeEEEecCCCcCc--ChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 468999999999986 5788999999999999999999999998753 36678888887653
No 22
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.51 E-value=3.9e-07 Score=58.98 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~ 67 (86)
..+.|+++++|+.|.++|++.++.+++.+. +.++..++++||.+.. ..+.+.+||.
T Consensus 196 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 196 RIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred ccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 457899999999999999999888877665 5688889999998765 2456777764
No 23
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.48 E-value=4.9e-07 Score=61.89 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=48.3
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHhh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLENR 69 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~ 69 (86)
+.|+|++||..|+++|+..++.+++.+. +.++..+++.||.... .++.+.+|+...
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~~~~~~i~~~~~~~ 305 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDPNNLAALVHALETY 305 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCChHHHHHHHHHHHHh
Confidence 5899999999999999999888887765 5789999999999876 788888888754
No 24
>PRK11071 esterase YqiA; Provisional
Probab=98.47 E-value=5.1e-07 Score=58.60 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=44.6
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLE 67 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~ 67 (86)
.....|++++||..|++||++.+.++++. .+...++|++|.+.. .++.+.+|+.
T Consensus 133 i~~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 133 LESPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGFERYFNQIVDFLG 189 (190)
T ss_pred CCChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhHHHhHHHHHHHhc
Confidence 44677899999999999999999998873 345577999999987 4678888874
No 25
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.45 E-value=5.5e-07 Score=60.06 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~ 67 (86)
..+.|+|+++|+.|+++|++.++.+++.+. +.++..++++||.+.. ..+.+..||.
T Consensus 221 ~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 221 EIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred hCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 467899999999999999998888887775 6889999999999765 2456777775
No 26
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.45 E-value=5.5e-07 Score=57.60 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=39.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+.+.|+|+++|..|.++|+...+.+.+.+. ++++..++++||.+..
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~ 231 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIFAKAAHAPFL 231 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEeCCCCCCccc
Confidence 567999999999999999998877776665 6889999999998765
No 27
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.43 E-value=1e-06 Score=58.20 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCCCCcEEEeecCCCCccCh-HHHHHHHHHHhcCCC--CeEEEEeCCCCCCCh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPY-MWGQLTSSLLKGFVK--NVTFNTYSGLQHSSN 56 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~-~~~~~~~~~l~~~g~--~v~~~~y~g~~H~~~ 56 (86)
.+.+.|+|++.|++|.+.|. ..++.+.++|++.|. +++...||++||.+.
T Consensus 112 E~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~ 164 (213)
T PF08840_consen 112 EKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIE 164 (213)
T ss_dssp GG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---
T ss_pred HHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceec
Confidence 35689999999999999996 556778899999886 488999999999875
No 28
>PRK10115 protease 2; Provisional
Probab=98.42 E-value=1e-06 Score=66.93 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=52.8
Q ss_pred CCCCc-EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEe---CCCCCCChH-------HHHHHHHHHHhhhcC
Q psy11078 8 NVNTR-FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTY---SGLQHSSNP-------ELKQVSTRLENRALS 72 (86)
Q Consensus 8 ~~~~P-ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y---~g~~H~~~~-------~~~~v~~wl~~~~~~ 72 (86)
+...| +|+.||.+|+.||+.++.+++.+|++.|.++++.+| ++.||+... +..+...||...+..
T Consensus 603 ~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 603 AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCC
Confidence 34677 788899999999999999999999999988777777 999998432 356678888876653
No 29
>KOG2100|consensus
Probab=98.39 E-value=1.3e-06 Score=67.02 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=54.4
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhcC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRALS 72 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~~ 72 (86)
+|++||+.|..|+++++..+++.|+.+|++.+..+||+.+|++.. ....+..|+...+..
T Consensus 685 ~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 685 LLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred EEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 699999999999999999999999999999999999999999986 357788999866553
No 30
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.38 E-value=1.2e-06 Score=57.86 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl 66 (86)
+.+.|+|+++|+.|.++|+...+.+.+.+. +.++..++++||.+.. ..+.+.+||
T Consensus 218 ~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~ 277 (278)
T TIGR03056 218 RITIPLHLIAGEEDKAVPPDESKRAATRVP----TATLHVVPGGGHLVHEEQADGVVGLILQAA 277 (278)
T ss_pred cCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeEEEECCCCCcccccCHHHHHHHHHHHh
Confidence 357899999999999999998888776665 5788999999998765 355666665
No 31
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.34 E-value=1.4e-06 Score=52.71 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
..+.|+|+++|..|+++|++..+++++.+. .+.++++++|++|.
T Consensus 102 ~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 102 KIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred ccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 456799999999999999999999999888 37999999999995
No 32
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.34 E-value=5.2e-07 Score=60.53 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHH
Q psy11078 4 TGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLE 67 (86)
Q Consensus 4 ~~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~ 67 (86)
++-..+..|+|+++|++|++||.+.+..+++..... +.++..|++.||-+++ ..+++..||+
T Consensus 175 ~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 175 RSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLE 242 (243)
T ss_pred hhhhhcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhh
Confidence 344567889999999999999999999999888754 7899999999999987 2577888886
No 33
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.33 E-value=2.7e-06 Score=59.74 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCCCcEEEeecCCCCccChHHH-HHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWG-QLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~-~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
..+.|+|+++|++|+++|++.. ....+.+.+.-.+.++++++|+||.+.. ..+.+.+||.+
T Consensus 290 ~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 290 RISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred hcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHh
Confidence 4578999999999999998753 2334445444347899999999998765 35778899975
No 34
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.31 E-value=1.5e-06 Score=58.72 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
+.+.|+|+++|..|+++|++.++.+.+.. ...++..++++||.... ....+.+||.+
T Consensus 232 ~i~~P~lvi~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 232 AVKCPVLIAWGEKDPWEPVELGRAYANFD----AVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred hcCCCeEEEEecCCCCCChHHHHHHHhcC----CccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 45889999999999999998877654432 24689999999998775 35667888865
No 35
>KOG1552|consensus
Probab=98.30 E-value=9e-07 Score=60.27 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----~~~~v~~wl~~~~~ 71 (86)
..+.|+|++||++|++||..++.+++++.+. +++..+..|+||.... -++.+..|+.....
T Consensus 190 ~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~~~~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 190 KITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDIELYPEYIEHLRRFISSVLP 254 (258)
T ss_pred eccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCcccccCHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999999886 5788888899997665 46778888876554
No 36
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.28 E-value=3.1e-06 Score=54.13 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+.+.|+++++|+.|.++|++..+.+.+.+. +.+++.++++||.+..
T Consensus 191 ~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~ 236 (251)
T TIGR02427 191 AIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIPCV 236 (251)
T ss_pred hcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcccc
Confidence 457899999999999999998877776654 5688999999998765
No 37
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.25 E-value=5.5e-06 Score=55.66 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=57.9
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------------HHHHHHHHHHhh
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------------ELKQVSTRLENR 69 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------------~~~~v~~wl~~~ 69 (86)
..+.+.|+|+.+|+.|+.+|...-..+.+.+.+.+.++++.+|++..|++.+ ...++.+||.+.
T Consensus 154 ~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 154 APKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred cccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999999999999999999999999999998872 256788898877
Q ss_pred hc
Q psy11078 70 AL 71 (86)
Q Consensus 70 ~~ 71 (86)
+.
T Consensus 234 ~~ 235 (236)
T COG0412 234 LG 235 (236)
T ss_pred cc
Confidence 64
No 38
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.23 E-value=1.4e-06 Score=56.29 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
...-+|+|+++|+.|.++ +.+..++++|++.|++++++.|+|..|.+.
T Consensus 163 ~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 163 LKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp CTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 444568999999999875 578899999999999999999999999864
No 39
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.23 E-value=4.7e-06 Score=49.45 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=47.0
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
..|+|+++++.|++.|++.++.+.+.|.. .++...+|.||+... ..+.+.+||.+
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 58999999999999999999999998884 578899999999872 56677788864
No 40
>PRK07581 hypothetical protein; Validated
Probab=98.22 E-value=5.6e-06 Score=57.29 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCC-CCCCChH-----HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG-LQHSSNP-----ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g-~~H~~~~-----~~~~v~~wl~~~~~ 71 (86)
..++|+|+++|+.|.++|+..++.+.+.+. +.++.++++ .||.... ....+.+||.+.++
T Consensus 273 ~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 273 SITAKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLAGFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHHh
Confidence 357899999999999999998888777665 578899998 8997664 35667777777654
No 41
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.22 E-value=4.4e-06 Score=54.85 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
..+.|+|+++|+.|+.++.+..+.+.+.+. +.++..++++||.... ..+.+..||.+
T Consensus 193 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 193 AWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 457899999999999999887777766554 6789999999997664 35678888864
No 42
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=98.20 E-value=1.1e-05 Score=57.15 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeC-CCCCCChH-----HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYS-GLQHSSNP-----ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~-g~~H~~~~-----~~~~v~~wl~~~~ 70 (86)
..++|+|+++|+.|.++|++.++.+.+.+...+..+++.+++ +.||.... ..+.+..||.+..
T Consensus 307 ~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 307 RIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred cCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999998877777888875 89998775 2567888888654
No 43
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.20 E-value=6.7e-06 Score=55.21 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~~ 70 (86)
+.+.|+|+++|+.|+++|+..++.+.+.+. +.++..+++ ||.+.. ..+.+.+|+.+.-
T Consensus 205 ~i~~P~lii~G~~D~~v~~~~~~~l~~~~~----~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 205 KIQQPTLVLAGDDDPIIPLINMRLLAWRIP----NAELHIIDD-GHLFLITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred cCCCCEEEEEeCCCCcCCHHHHHHHHHhCC----CCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhh
Confidence 567899999999999999999888887765 467778886 998665 3567888887643
No 44
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.20 E-value=3.6e-06 Score=57.22 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~ 69 (86)
.+.++|+++++|+.|+++|+.. +.+.+.+.+. ..+.+..++++||.+.. ....+..||.++
T Consensus 236 ~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 236 ERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred hcCCCceEEEecCCCCcccCch-HHHHhhcccc-cccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 3568999999999999999865 6666666532 12347789999999775 356778888653
No 45
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.20 E-value=5.9e-06 Score=59.48 Aligned_cols=59 Identities=22% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~~ 70 (86)
..+.|+|++||++|++||++.++.+.+.+. +.++..+|+..|.-.. .+..+..||.+++
T Consensus 353 ~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~~~~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 353 RCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFKPVYRNFDKALQEISDWLEDRL 413 (414)
T ss_pred CCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCCCccCCHHHHHHHHHHHHHHHh
Confidence 577999999999999999999987765543 6778889986333333 6889999998865
No 46
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.19 E-value=5.4e-06 Score=56.05 Aligned_cols=61 Identities=8% Similarity=-0.031 Sum_probs=45.3
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~~~ 71 (86)
..+.|+|+++|+.|+++++....+....+.. +.++.+++++||.... ..+.+.+|+.+...
T Consensus 226 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 226 TSDVPKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred cCCCCeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhhhcCHHHHHHHHHHHHHHhcc
Confidence 4589999999999999966555444433222 5788999999998875 35778889886544
No 47
>PLN02965 Probable pheophorbidase
Probab=98.19 E-value=7.3e-06 Score=54.50 Aligned_cols=46 Identities=7% Similarity=-0.097 Sum_probs=40.4
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
..+.|+++++|++|.++|+..++.+.+.+. +.++.+++++||.+..
T Consensus 191 ~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~~GH~~~~ 236 (255)
T PLN02965 191 AEKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLEDSDHSAFF 236 (255)
T ss_pred cCCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecCCCCchhh
Confidence 478999999999999999998888887666 5688999999999886
No 48
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.14 E-value=6.3e-06 Score=51.79 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=38.4
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
.+.|+++++|..|.++|.+..+.+.+.+. ++++..++++||.+..
T Consensus 175 ~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~ 219 (228)
T PF12697_consen 175 IKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLFL 219 (228)
T ss_dssp SSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHHH
T ss_pred cCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccHH
Confidence 47999999999999999877777776554 6899999999998765
No 49
>KOG3043|consensus
Probab=98.13 E-value=1.9e-05 Score=53.20 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=52.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCC-CeEEEEeCCCCCCChH----------------HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK-NVTFNTYSGLQHSSNP----------------ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~-~v~~~~y~g~~H~~~~----------------~~~~v~~wl~~~~ 70 (86)
+.+.||+++.|+.|.++|+.....+-+.++++.. ..++++|+|.+|++.. ....+..||.+.+
T Consensus 162 ~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 162 NVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred cCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999999999987643 4689999999999872 1467888988765
No 50
>KOG4391|consensus
Probab=98.12 E-value=6.2e-06 Score=55.76 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=54.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----HHHHHHHHHHhhhcCCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----ELKQVSTRLENRALSGN 74 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----~~~~v~~wl~~~~~~~~ 74 (86)
....|+|++.|..|.+|||...+.+++.-... ..++..||++.|.-+- -+..+.+||.+....++
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~i~dGYfq~i~dFlaE~~~~~P 287 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTWICDGYFQAIEDFLAEVVKSSP 287 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceEEeccHHHHHHHHHHHhccCCh
Confidence 57899999999999999999999999755443 6789999999997553 57889999998776553
No 51
>PRK10349 carboxylesterase BioH; Provisional
Probab=98.10 E-value=8.8e-06 Score=53.85 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
..+.|+|+++|+.|.++|.+.++.+.+.+. +.++.++|++||.+..
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~~~gH~~~~ 239 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAKAAHAPFI 239 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeCCCCCCccc
Confidence 468999999999999999988776666654 6789999999998775
No 52
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=49.9
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--------HHHHHHHHHHhhh
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--------ELKQVSTRLENRA 70 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--------~~~~v~~wl~~~~ 70 (86)
.|+|++||..|.+||...+..+++..... +.+...+++++|.... .+.++..|+.+.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999988865 6788899999998762 3678889988764
No 53
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.06 E-value=2.2e-05 Score=60.51 Aligned_cols=65 Identities=14% Similarity=-0.059 Sum_probs=54.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhcCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRALSG 73 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~~~ 73 (86)
+.++|+|++||..|..|++.++.++++.+++.|.+.++.+.++ +|.... ..+.+..||++.+.+.
T Consensus 453 kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~~~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 453 KIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQSIDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred CCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchhHHHHHHHHHHHHHhccccC
Confidence 5789999999999999999999999999999888898888774 785432 2567889999987654
No 54
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.06 E-value=2.7e-05 Score=55.76 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCC-CCCCChH-----HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG-LQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g-~~H~~~~-----~~~~v~~wl~~ 68 (86)
..+.|+|+++|..|.++|++.++.+.+.+...+.+++++++++ .||.... ..+.+.+||.+
T Consensus 321 ~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 321 NIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 4689999999999999999999999999987666899999985 8998765 24557777754
No 55
>PLN02872 triacylglycerol lipase
Probab=98.05 E-value=2.6e-05 Score=56.00 Aligned_cols=65 Identities=9% Similarity=-0.071 Sum_probs=50.9
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCC--Ch----H--HHHHHHHHHHhhhcCC
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS--SN----P--ELKQVSTRLENRALSG 73 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~--~~----~--~~~~v~~wl~~~~~~~ 73 (86)
.+..+.|+++++|..|.++++...+.+.+.+.. ..+++.+++.+|. +. + ..+.+.+||.+..+.+
T Consensus 321 ~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~~ 393 (395)
T PLN02872 321 LIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKSS 393 (395)
T ss_pred cCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhcc
Confidence 344478999999999999999988888887764 2578889999996 21 1 3678999999766543
No 56
>PRK06489 hypothetical protein; Provisional
Probab=98.02 E-value=2e-05 Score=55.26 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=45.9
Q ss_pred CCCCcEEEeecCCCCccChHHH--HHHHHHHhcCCCCeEEEEeCCC----CCCChH----HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWG--QLTSSLLKGFVKNVTFNTYSGL----QHSSNP----ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~--~~~~~~l~~~g~~v~~~~y~g~----~H~~~~----~~~~v~~wl~~~~ 70 (86)
..+.|+|+++|+.|.++|++.+ +.+.+.+. +.++.++|++ ||.... ..+.+.+||.+..
T Consensus 290 ~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 290 KIKAPVLAINSADDERNPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTTGSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred hCCCCEEEEecCCCcccChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccccCHHHHHHHHHHHHHhcc
Confidence 4689999999999999999875 56666665 5789999985 998754 2456778887543
No 57
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.01 E-value=1.4e-05 Score=56.00 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-H-HHHHHHHHHhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-E-LKQVSTRLENR 69 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~-~~~v~~wl~~~ 69 (86)
.++.|+++.-|-.|++|||......++.+.. +.++.+||..+|+..+ . .+...+||.++
T Consensus 260 ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~---~K~l~vyp~~~He~~~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 260 RIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG---PKELVVYPEYGHEYGPEFQEDKQLNFLKEH 320 (320)
T ss_dssp G--SEEEEEEETT-SSS-HHHHHHHHCC--S---SEEEEEETT--SSTTHHHHHHHHHHHHHH-
T ss_pred HcCCCEEEEEecCCCCCCchhHHHHHhccCC---CeeEEeccCcCCCchhhHHHHHHHHHHhcC
Confidence 4679999999999999999999999988864 7999999999999988 4 78899999864
No 58
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.99 E-value=3.4e-05 Score=53.03 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=47.9
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--------HHHHHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--------ELKQVSTRLE 67 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--------~~~~v~~wl~ 67 (86)
-+|+|+.+|+.|++.+ .+..+.++|++.|+.++++.|+|+.|.+.. .+..+..|+.
T Consensus 245 lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 245 LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 5789999999999999 888999999999999999999999998832 2455666665
No 59
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=97.98 E-value=3.6e-05 Score=53.73 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=45.3
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEE-eCCCCCCChH-H----HHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNT-YSGLQHSSNP-E----LKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~-y~g~~H~~~~-~----~~~v~~wl 66 (86)
..++|+|+++|+.|.++|+..++.+.+.+......++++. ++++||.... . .+.+.+||
T Consensus 286 ~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL 350 (351)
T TIGR01392 286 RIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFL 350 (351)
T ss_pred hCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHh
Confidence 4578999999999999999999999999986544445545 4689998765 2 34556665
No 60
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=97.97 E-value=2.9e-05 Score=50.76 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl 66 (86)
..+.|+|+++|+.|.+ ++...+.+.+.+. +.+++.++++||.... ..+.+..||
T Consensus 229 ~i~~P~lii~G~~D~~-~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl 287 (288)
T TIGR01250 229 EIKVPTLLTVGEFDTM-TPEAAREMQELIA----GSRLVVFPDGSHMTMIEDPEVYFKLLSDFI 287 (288)
T ss_pred ccCCCEEEEecCCCcc-CHHHHHHHHHhcc----CCeEEEeCCCCCCcccCCHHHHHHHHHHHh
Confidence 4679999999999985 6666666665554 5688999999998765 244556665
No 61
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.93 E-value=2.1e-05 Score=54.95 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh-------H-HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN-------P-ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~-------~-~~~~v~~wl~~ 68 (86)
..+.|+|+++|+.|.++|+..++.+++.+.. .+++++.|+ +||... . ..+++.+||.+
T Consensus 284 ~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 284 NIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred hCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 4578999999999999999999888887653 367889998 477542 1 46889999975
No 62
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.92 E-value=2.7e-05 Score=53.89 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-H----HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-E----LKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~----~~~v~~wl~ 67 (86)
..++|+|++||+.|.++|+..++.+. ..+++.+++++||.... . .+.+.+||.
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 369 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGAGHMPQMEAAADVNRLLAEFLG 369 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCCCCChhhhCHHHHHHHHHHHhc
Confidence 45789999999999999988765432 25788999999998765 2 344555654
No 63
>PRK03204 haloalkane dehalogenase; Provisional
Probab=97.90 E-value=2.9e-05 Score=52.78 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=40.5
Q ss_pred CCcEEEeecCCCCccChH-HHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYM-WGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRL 66 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~-~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl 66 (86)
++|+++++|+.|.++|+. .++.+.+.+. +.++++++++||.+.. ..+.+..||
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP----DHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC----CCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 899999999999998765 4555565555 5789999999999875 244555554
No 64
>KOG4667|consensus
Probab=97.89 E-value=1.9e-05 Score=53.23 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=44.2
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
++..++|+|-+||..|.+||.+.+.++++.+. +.++++.||++|....
T Consensus 195 kId~~C~VLTvhGs~D~IVPve~AkefAk~i~----nH~L~iIEgADHnyt~ 242 (269)
T KOG4667|consen 195 KIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP----NHKLEIIEGADHNYTG 242 (269)
T ss_pred CcCccCceEEEeccCCceeechhHHHHHHhcc----CCceEEecCCCcCccc
Confidence 47789999999999999999999999999888 4889999999999886
No 65
>KOG1454|consensus
Probab=97.88 E-value=4.7e-05 Score=53.43 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~ 69 (86)
.+.|+|+++|..|+++|.+.++.+...+ .+++++..+++||.... ....+..|+.+.
T Consensus 263 ~~~pvlii~G~~D~~~p~~~~~~~~~~~----pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 263 WKCPVLIIWGDKDQIVPLELAEELKKKL----PNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred cCCceEEEEcCcCCccCHHHHHHHHhhC----CCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 4599999999999999999776666555 47999999999998765 356788888764
No 66
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.88 E-value=5.5e-05 Score=48.30 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+.+.|+|+++|..|+++|+.....+.+.+. +.+++.+++.||....
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~~~ 218 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFAFL 218 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHHHh
Confidence 478999999999999999999888666555 5899999999998765
No 67
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=97.86 E-value=5.6e-05 Score=55.66 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
..+.|+|+++|++|+++|++.++.+.+.+. +.+++++++.||...
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~ 460 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITI 460 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcch
Confidence 368999999999999999999988887776 689999999999844
No 68
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=97.86 E-value=4.1e-05 Score=53.30 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=47.0
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCC-CCCCChH-----HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG-LQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g-~~H~~~~-----~~~~v~~wl~~~ 69 (86)
.+.+.|+|+++|+.|.++|++.++.+.+.+.. +.++.++++ .||.... ....+.+||.+.
T Consensus 274 ~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 274 EAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLRSPYGHDAFLKETDRIDAILTTALRST 339 (343)
T ss_pred hcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhc
Confidence 35788999999999999999988777766632 578999985 8998775 245677888653
No 69
>PLN02578 hydrolase
Probab=97.82 E-value=6.7e-05 Score=52.54 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=43.3
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~ 67 (86)
..+.|+++++|+.|+++|.+.++.+.+.+. +.++..++ +||.+.. ..+.+.+||.
T Consensus 294 ~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p----~a~l~~i~-~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 294 KLSCPLLLLWGDLDPWVGPAKAEKIKAFYP----DTTLVNLQ-AGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEeC-CCCCccccCHHHHHHHHHHHHh
Confidence 468999999999999999998888877765 45677774 7998764 2466778874
No 70
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.79 E-value=9.9e-05 Score=52.83 Aligned_cols=55 Identities=15% Similarity=-0.075 Sum_probs=43.6
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~ 67 (86)
..+.|+++++|+.|.+++++..+.+.+.. +.++.+++++||.+.. ..+.+..||.
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 46899999999999999998877766642 5688999999998876 2455667764
No 71
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.65 E-value=0.00015 Score=57.06 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=49.7
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEE-EEeCCCCCCCh-------H-HHHHHHHHHHhhhcCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTF-NTYSGLQHSSN-------P-ELKQVSTRLENRALSG 73 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~-~~y~g~~H~~~-------~-~~~~v~~wl~~~~~~~ 73 (86)
.+.+.|+|+++|+.|+++|++.++.+.+.+. ..++ ..++++||... . ..+.+.+||.++-...
T Consensus 294 ~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~----~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~ 365 (994)
T PRK07868 294 ADITCPVLAFVGEVDDIGQPASVRGIRRAAP----NAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDG 365 (994)
T ss_pred hhCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCC
Confidence 4677999999999999999999998877664 3455 56678999742 2 4688999999876555
No 72
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.57 E-value=0.00015 Score=46.09 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl 66 (86)
..+.|+++++|..|+.++ ... +.+.+...+.++..+|+.||.+.. ..+.+..||
T Consensus 192 ~~~~P~l~i~g~~D~~~~-~~~----~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 192 ALTIPVLYLCGEKDEKFV-QIA----KEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFL 250 (251)
T ss_pred CCCCceEEEeeCcchHHH-HHH----HHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHh
Confidence 467999999999998763 333 334444346889999999998765 244556665
No 73
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.57 E-value=3.1e-05 Score=54.36 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeC---CCCCCChH--------HHHHHHHHHHh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYS---GLQHSSNP--------ELKQVSTRLEN 68 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~---g~~H~~~~--------~~~~v~~wl~~ 68 (86)
...+.|++++|+.+|+++|.+.++-++++|+..+.+|.+..|. -..|++.+ ...++..||-+
T Consensus 312 ~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 312 TLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred hhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhccccccccCCCCcceeecCCHHHHHHHHh
Confidence 4678999999999999999999999999999988888887776 12333332 46788999865
No 74
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.48 E-value=0.00052 Score=44.13 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----HHHHHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----ELKQVSTRLE 67 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----~~~~v~~wl~ 67 (86)
..|-+++.+.+|+.||++.++.+++.+. .++..++++||.... .++.+...|+
T Consensus 114 ~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 114 PFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAASGFGPWPEGLDLLQ 170 (171)
T ss_dssp HCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGGGTHSS-HHHHHHHH
T ss_pred CCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCcccccCCCchHHHHHHhc
Confidence 3566899999999999999999999886 679999999998776 4677777665
No 75
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.46 E-value=0.00073 Score=45.92 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhhhc
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENRAL 71 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~~ 71 (86)
.......||.++.|+.|..|.-+....+.+..+. ..+++.|+| ||.+.+ ..+++..+|.+.++
T Consensus 171 ~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 171 PPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehhhhHHHHHHHHHHHhh
Confidence 3467789999999999999999887766665554 799999995 999998 78888888887774
No 76
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=97.45 E-value=0.00052 Score=44.70 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=37.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
+.+.|+++++|++|+++. ...+. .+.++..++++||.+.. ..+.+.+||.+
T Consensus 186 ~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 186 ALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred ccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 458899999999998653 12221 15789999999998775 24567777754
No 77
>PLN02511 hydrolase
Probab=97.44 E-value=0.00026 Score=50.44 Aligned_cols=60 Identities=18% Similarity=-0.020 Sum_probs=44.0
Q ss_pred CCCCcEEEeecCCCCccChHHHH-HHHHHHhcCCCCeEEEEeCCCCCCChH----H-------HHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQ-LTSSLLKGFVKNVTFNTYSGLQHSSNP----E-------LKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~-~~~~~l~~~g~~v~~~~y~g~~H~~~~----~-------~~~v~~wl~~~~~ 71 (86)
+.+.|+|+++|.+|+++|+.... ... +...++++.+++++||.... . .+.+.+||.....
T Consensus 296 ~I~vPtLiI~g~dDpi~p~~~~~~~~~----~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 296 HVRVPLLCIQAANDPIAPARGIPREDI----KANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred cCCCCeEEEEcCCCCcCCcccCcHhHH----hcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 47899999999999999986542 222 22337899999999996543 1 4668888876654
No 78
>KOG2984|consensus
Probab=97.43 E-value=0.00014 Score=48.80 Aligned_cols=58 Identities=22% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----HH-HHHHHHHHh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----EL-KQVSTRLEN 68 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----~~-~~v~~wl~~ 68 (86)
.+.+.|.||+||..|+.|+-.+.--+..... -.++.++|.++|.+.. ++ ..+.+||..
T Consensus 213 p~vkcPtli~hG~kDp~~~~~hv~fi~~~~~----~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 213 PQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS----LAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred ccccCCeeEeeCCcCCCCCCCCccchhhhcc----cceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 4678999999999999999887644443333 5789999999999875 33 346677764
No 79
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.40 E-value=0.00019 Score=46.79 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=27.6
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
..+|+|++||.+|++||+..++.+++.|++.
T Consensus 167 ~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 167 PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 4455789999999999999999999999875
No 80
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00081 Score=50.78 Aligned_cols=63 Identities=14% Similarity=-0.007 Sum_probs=54.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-------HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-------ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-------~~~~v~~wl~~~~ 70 (86)
..=+|+||.-|..|+.|-|.++++|+.+|+++|.++-+++--++||+-.. +..++..||.+.+
T Consensus 578 ~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 578 QKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred ccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 44578999999999999999999999999999999988888889997653 4677888988765
No 81
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.37 E-value=0.00086 Score=48.08 Aligned_cols=61 Identities=7% Similarity=-0.251 Sum_probs=42.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhhhcC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENRALS 72 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~~~~ 72 (86)
..+.|+++++|..|.++| ..+..+.+.+ +..+++.+++++||.+.. -...+..|+...+..
T Consensus 323 ~I~vP~liI~G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred cCCCCEEEEEeCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccC
Confidence 357999999999998765 4444444333 335789999999998764 245566676665543
No 82
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.33 E-value=0.00061 Score=45.27 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=46.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
.....|-|.+++..|.+||++..+++++..++.|.+|+...|++..|.-..
T Consensus 175 ~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~ 225 (240)
T PF05705_consen 175 SPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHL 225 (240)
T ss_pred CCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhc
Confidence 445689999999999999999999999999999999999999999996553
No 83
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.32 E-value=0.00055 Score=50.35 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=50.9
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcC-C-----C--CeEEEEeCCCCCCChH-------HHHHHHHHHHhhhcCC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGF-V-----K--NVTFNTYSGLQHSSNP-------ELKQVSTRLENRALSG 73 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~-g-----~--~v~~~~y~g~~H~~~~-------~~~~v~~wl~~~~~~~ 73 (86)
.-.++++||..|++||+..+.+.|+++.+. | + -+++...||++|...- .+..+.+|.++=.+..
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~AP~ 431 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGKAPE 431 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCCCCC
Confidence 346899999999999999999999999754 2 1 2677888999997542 6889999999754443
No 84
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=97.32 E-value=0.00087 Score=43.78 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLE 67 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~ 67 (86)
.....++++++|+.|.++++..+...+ + .....+.+|++|.+.. .++.+.+|+.
T Consensus 131 ~~~~~~~lvll~~~DEvLd~~~a~~~~---~----~~~~~i~~ggdH~f~~f~~~l~~i~~f~~ 187 (187)
T PF05728_consen 131 PTNPERYLVLLQTGDEVLDYREAVAKY---R----GCAQIIEEGGDHSFQDFEEYLPQIIAFLQ 187 (187)
T ss_pred cCCCccEEEEEecCCcccCHHHHHHHh---c----CceEEEEeCCCCCCccHHHHHHHHHHhhC
Confidence 344568999999999999997654443 3 2334467888999987 5888888873
No 85
>PRK05855 short chain dehydrogenase; Validated
Probab=97.30 E-value=0.00046 Score=50.27 Aligned_cols=57 Identities=11% Similarity=-0.097 Sum_probs=43.6
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~ 69 (86)
..++|+|+++|.+|+++|+...+.+.+.+. ..+++.++ +||.... ..+.+.+|+...
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred CccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchhhChhHHHHHHHHHHHhc
Confidence 368999999999999999988877765443 45677776 5898765 246688888753
No 86
>KOG2551|consensus
Probab=97.25 E-value=0.0011 Score=44.61 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHHhhhc
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLENRAL 71 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~~~~~ 71 (86)
....++|.|-+.|+.|.+||...+..+++...+. .....| +||.+.+ ..+.+.+||...+.
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hp-ggH~VP~~~~~~~~i~~fi~~~~~ 222 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEHP-GGHIVPNKAKYKEKIADFIQSFLQ 222 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEecC-CCccCCCchHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998854 455556 6999988 57889999987654
No 87
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.22 E-value=0.0018 Score=46.91 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=47.7
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHHh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLEN 68 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~~ 68 (86)
....+++.+|..|..+ +...+.+++.|++.|.++++++|+| ||.... .+.+.+.||-.
T Consensus 348 ~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~~~Wr~~L~~~L~~l~~ 408 (411)
T PRK10439 348 RGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDALCWRGGLIQGLIDLWQ 408 (411)
T ss_pred CCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHHHHHHHHHHHHhc
Confidence 3457999999999765 5677899999999999999999997 898766 67777777753
No 88
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=97.18 E-value=0.0012 Score=44.86 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=39.7
Q ss_pred CCCcEEEeecCCCCccChHH-----HHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHH
Q psy11078 9 VNTRFLQAHGDCDPIVPYMW-----GQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLE 67 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~-----~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~ 67 (86)
.+.|+|+++|..|+..+.-. +....+.+.. .++++..+++++|.++. ..+.+.+||+
T Consensus 206 ~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 206 FQGPVLFILSGNDLTAQEFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred cCCcEEEEEcCcchhHHHHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 47899999999999864211 0222222321 37899999999998844 3567889985
No 89
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.15 E-value=0.0019 Score=53.59 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=48.2
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCC--------CCeEEEEeCCCCCCChH-----HHHHHHHHHHhhhcCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV--------KNVTFNTYSGLQHSSNP-----ELKQVSTRLENRALSG 73 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g--------~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~~~~~ 73 (86)
..+.|+|+++|+.|.++| ..+.++.+.+.+.. ..+++.++|++||.... ..+.+..||.+.-..+
T Consensus 1566 ~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~~~~~ 1643 (1655)
T PLN02980 1566 QCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRLHNSS 1643 (1655)
T ss_pred hCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhccccC
Confidence 457899999999999875 66667776665421 13689999999998875 3567889998755433
No 90
>KOG2281|consensus
Probab=97.08 E-value=0.0017 Score=49.70 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=50.0
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-H-----HHHHHHHHHh
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-E-----LKQVSTRLEN 68 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~-----~~~v~~wl~~ 68 (86)
+|++||--|.-|-..+.-.+..+|-++|.+.++.+||+..|.+.+ + -..+..||++
T Consensus 805 LlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 805 LLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999986 1 2457777764
No 91
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.07 E-value=0.001 Score=48.21 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCC-CcEEEeecCCCCccChHHHHHHHHHHhcCCC-CeEEEEeCCCCCC-ChH-------HHHHHHHHHHh
Q psy11078 8 NVN-TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK-NVTFNTYSGLQHS-SNP-------ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~-~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~-~v~~~~y~g~~H~-~~~-------~~~~v~~wl~~ 68 (86)
+++ +|+|.+-|+.|.++|+.+++.+.+.....+. +.+.+..+++||- +.. ..+.+.+||.+
T Consensus 335 ~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 335 AITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred HCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 455 9999999999999999999988876544443 5667777778994 322 35789999975
No 92
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.07 E-value=0.0013 Score=45.72 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~~ 70 (86)
..+.|+|+.-|..|+++||......++.+.. ..++.+||--+|+-.+ .-.++..|+....
T Consensus 257 RiK~pvL~svgL~D~vcpPstqFA~yN~l~~---~K~i~iy~~~aHe~~p~~~~~~~~~~l~~l~ 318 (321)
T COG3458 257 RIKVPVLMSVGLMDPVCPPSTQFAAYNALTT---SKTIEIYPYFAHEGGPGFQSRQQVHFLKILF 318 (321)
T ss_pred hhccceEEeecccCCCCCChhhHHHhhcccC---CceEEEeeccccccCcchhHHHHHHHHHhhc
Confidence 4678999999999999999999999998875 6778888877898777 5667899998654
No 93
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=97.05 E-value=0.0022 Score=43.50 Aligned_cols=55 Identities=9% Similarity=-0.161 Sum_probs=41.1
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENR 69 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~ 69 (86)
+.|++++.|++|.++|++.++.+.+.+. ..+++..+ +||.... .-+.+...|.+.
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~----~~~~~~l~-~gH~p~ls~P~~~~~~i~~~ 266 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP----PSQVYELE-SDHSPFFSTPFLLFGLLIKA 266 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC----ccEEEEEC-CCCCccccCHHHHHHHHHHH
Confidence 7899999999999999999988887765 23677777 7998765 334445555443
No 94
>PRK10985 putative hydrolase; Provisional
Probab=97.03 E-value=0.001 Score=46.03 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=42.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------~~~~v~~wl~~~~ 70 (86)
....|+++++|.+|+++|++....+.+. ..++++.+.+++||.... .-+.+.+|+....
T Consensus 253 ~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMTHEVIPKPESL----PPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCCCEEEEecCCCCCCChhhChHHHHh----CCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 4578999999999999998766554322 236888999999995432 3455777776544
No 95
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=96.98 E-value=0.003 Score=41.55 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
....++|.|-++|.+|++++++.++.+++..... .+...++ +||.+..
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~-gGH~vP~ 204 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHD-GGHHVPR 204 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEES-SSSS---
T ss_pred cccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEEC-CCCcCcC
Confidence 4556999999999999999999999999998853 7777787 5998876
No 96
>KOG1515|consensus
Probab=96.87 E-value=0.0027 Score=45.05 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=48.2
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------HHHHHHHHHHh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------ELKQVSTRLEN 68 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------~~~~v~~wl~~ 68 (86)
-+|+|++-++.|.+. +++...+++|++.|+++++..|+++.|++.. .++.+..||.+
T Consensus 268 lp~tlv~~ag~D~L~--D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 268 LPPTLVVVAGYDVLR--DEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred CCceEEEEeCchhhh--hhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 345999999999887 8888999999999999999999999998753 36778888875
No 97
>KOG4178|consensus
Probab=96.86 E-value=0.0042 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=45.3
Q ss_pred CCCCCCcEEEeecCCCCccChH-HHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYM-WGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~-~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
......|++++.|..|.+.++. .++.+...+.. ..+-..++|.||.+.. ..+.+.+||++
T Consensus 254 ~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~---l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~ 319 (322)
T KOG4178|consen 254 LAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPR---LTERVVIEGIGHFVQQEKPQEVNQAILGFINS 319 (322)
T ss_pred ccccccceEEEEecCcccccchhHHHHHHHhhcc---ccceEEecCCcccccccCHHHHHHHHHHHHHh
Confidence 3567899999999999999987 34344444443 2367889999999886 36778889875
No 98
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.67 E-value=0.0036 Score=46.80 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
...++|+|+++|..|.++|+..++.+.+.+. ..+..+++++||...
T Consensus 412 ~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~----~~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 412 SKVKVPVYIIATREDHIAPWQSAYRGAALLG----GPKTFVLGESGHIAG 457 (532)
T ss_pred hhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC----CCEEEEECCCCCchH
Confidence 3567999999999999999999888776554 345667888999765
No 99
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=96.60 E-value=0.0076 Score=43.27 Aligned_cols=62 Identities=8% Similarity=-0.058 Sum_probs=55.0
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHhhhcCC
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLENRALSG 73 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~~~~~ 73 (86)
...|-|++.|..|+.-.++.+.-+++.|.. +..++..|+.+|.... .+..+..|+...+...
T Consensus 261 L~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~~~~~~~l~~f~~~~~~~~ 324 (367)
T PF10142_consen 261 LTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIGSDVVQSLRAFYNRIQNGR 324 (367)
T ss_pred cCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccchHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999998885 7889999999999887 7888999999876655
No 100
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.45 E-value=0.018 Score=35.93 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
...+.|+++++|..|.+.|........+.+.. ..++.+.++.+|....
T Consensus 218 ~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~ 265 (282)
T COG0596 218 ARITVPTLIIHGEDDPVVPAELARRLAAALPN---DARLVVIPGAGHFPHL 265 (282)
T ss_pred ccCCCCeEEEecCCCCcCCHHHHHHHHhhCCC---CceEEEeCCCCCcchh
Confidence 45579999999999977776653344433332 4789999999999876
No 101
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.26 E-value=0.0078 Score=39.96 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---H-HHHHHHHHH
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---E-LKQVSTRLE 67 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~-~~~v~~wl~ 67 (86)
...|.+++||+.|++|++....++++. .+.+....++++|.+.. . .+.+..||.
T Consensus 148 ~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~gKl~~l~~~i~~~l~ 205 (210)
T COG2945 148 CPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHGKLIELRDTIADFLE 205 (210)
T ss_pred CCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecccHHHHHHHHHHHhh
Confidence 356899999999999999876555543 47889999999999987 3 345666763
No 102
>KOG2382|consensus
Probab=96.11 E-value=0.012 Score=41.40 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~ 69 (86)
.....|+|+++|..+..||.+.-..+...+. .++++..+++||++.. -++-+.+|+...
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp----~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFP----NVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhcc----chheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 4567899999999999999988767666666 5999999999999875 366677777653
No 103
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=96.09 E-value=0.0025 Score=44.60 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=8.5
Q ss_pred CCCcEEEeecCCCCccChH-HHHHHHHHHhcCCC----CeEEEEeCCCCCCChH-HHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPYM-WGQLTSSLLKGFVK----NVTFNTYSGLQHSSNP-ELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~-~~~~~~~~l~~~g~----~v~~~~y~g~~H~~~~-~~~~v~~wl~~~ 69 (86)
...|+|++.|..|+.||.. ..+++.++++++-. .-...+.||+.|.+.. .-+...+||.++
T Consensus 231 v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~r 297 (303)
T PF08538_consen 231 VSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVER 297 (303)
T ss_dssp --S-EEEEEE--TT-----------------------------------------------------
T ss_pred CCCceEEEecCCCceeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4459999999999999973 34567777775432 2234588999999987 444455565543
No 104
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=96.03 E-value=0.021 Score=41.66 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCC-CCChH-HHHHHHHHHHhhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQ-HSSNP-ELKQVSTRLENRA 70 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~-H~~~~-~~~~v~~wl~~~~ 70 (86)
....+|+|.+.|.+|+++|.+..+.++ ..+.+-+...++... |.-.. .+..+..||.+.+
T Consensus 349 rr~~~plL~i~~~~D~v~P~eD~~lia----~~s~~gk~~~~~~~~~~~gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 349 RRCPTPLLAINGEDDPVSPIEDSRLIA----ESSTDGKALRIPSKPLHMGYPQALDEIYKWLEDKL 410 (411)
T ss_dssp S-BSS-EEEEEETT-SSS-HHHHHHHH----HTBTT-EEEEE-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEeecCCCCCCCHHHHHHHH----hcCCCCceeecCCCccccchHHHHHHHHHHHHHhc
Confidence 567889999999999999999876555 334455566665333 65555 7999999999765
No 105
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.94 E-value=0.016 Score=43.74 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
.++++|+|++.|..|.+||.+.+..+.+.+- .+++|...+ +||-
T Consensus 438 ~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~g---s~~~fvl~~-gGHI 481 (560)
T TIGR01839 438 KKVKCDSFSVAGTNDHITPWDAVYRSALLLG---GKRRFVLSN-SGHI 481 (560)
T ss_pred hcCCCCeEEEecCcCCcCCHHHHHHHHHHcC---CCeEEEecC-CCcc
Confidence 4678999999999999999999988877553 379999997 5884
No 106
>KOG3253|consensus
Probab=95.48 E-value=0.04 Score=42.26 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=41.5
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
.+.|+|++.|..|..+++...+++.+++++ .++.+...+++|.+-
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsma 347 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMA 347 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCcccc
Confidence 368999999999999999999999999987 789999999999875
No 107
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.30 E-value=0.14 Score=37.26 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=36.1
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEe
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTY 48 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y 48 (86)
.++-...+|+..|+.+|++.-+.+++.+++.|.+++++..
T Consensus 292 ~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lI 331 (403)
T PF11144_consen 292 KKIIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLI 331 (403)
T ss_pred cceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455678899999999999999999999999999999888
No 108
>COG0627 Predicted esterase [General function prediction only]
Probab=95.29 E-value=0.053 Score=38.21 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=54.8
Q ss_pred CCCcEEEeecCCCCccC-h-HHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHHhhhcC
Q psy11078 9 VNTRFLQAHGDCDPIVP-Y-MWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLENRALS 72 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp-~-~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~~~~~~ 72 (86)
...++++.+|..|.... . ...+.+.+++++.|.+..++.+++..|.... .+++...|+...+..
T Consensus 246 ~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 246 SPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYFWASQLADHLPWLAGALGL 314 (316)
T ss_pred CCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 55779999999999986 3 4478899999999999999999999999776 799999999988764
No 109
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=94.65 E-value=0.039 Score=38.12 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=33.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~ 67 (86)
..+.|++.+++..|..|......++...+... ..+.+..+|..|.+...+..+.+|..
T Consensus 193 ~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~--~~klysl~Gs~HdL~enl~vlrnfy~ 250 (294)
T PF02273_consen 193 RLSIPFIAFTANDDDWVKQSEVEELLDNINSN--KCKLYSLPGSSHDLGENLVVLRNFYQ 250 (294)
T ss_dssp T--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEETT-SS-TTSSHHHHHHHHH
T ss_pred hCCCCEEEEEeCCCccccHHHHHHHHHhcCCC--ceeEEEecCccchhhhChHHHHHHHH
Confidence 34789999999999999988665555444322 57788889999988763333344443
No 110
>KOG4409|consensus
Probab=94.58 E-value=0.14 Score=36.79 Aligned_cols=48 Identities=17% Similarity=-0.014 Sum_probs=36.6
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
.+.+.|++++||..|-+ ....+.+....++.. .++.++.|++||.+..
T Consensus 300 l~~~~pv~fiyG~~dWm-D~~~g~~~~~~~~~~--~~~~~~v~~aGHhvyl 347 (365)
T KOG4409|consen 300 LKKDVPVTFIYGDRDWM-DKNAGLEVTKSLMKE--YVEIIIVPGAGHHVYL 347 (365)
T ss_pred hccCCCEEEEecCcccc-cchhHHHHHHHhhcc--cceEEEecCCCceeec
Confidence 35689999999999877 555565666655432 6899999999998764
No 111
>PRK04940 hypothetical protein; Provisional
Probab=94.58 E-value=0.16 Score=33.25 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=39.7
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHH
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLE 67 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~ 67 (86)
.++++....|+++++..+.+.+. . -.+..+.+|++|.+.. -++.|.+|+.
T Consensus 126 r~~vllq~gDEvLDyr~a~~~y~---~---~y~~~v~~GGdH~f~~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTAEELH---P---YYEIVWDEEQTHKFKNISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHHHHhc---c---CceEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 37899999999999998765552 1 1147889999999987 5889999985
No 112
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=94.53 E-value=0.057 Score=36.17 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=26.9
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
....|++++||..|.+|.+..+.++.+.+...
T Consensus 167 ~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 167 YPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred CCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 34579999999999999999988887777653
No 113
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=93.89 E-value=0.17 Score=34.20 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=36.6
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC-CCeEEEEeCCCCCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV-KNVTFNTYSGLQHS 54 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g-~~v~~~~y~g~~H~ 54 (86)
.+.++|+|+++|-.|.... ..+.+.++.|++.+ .+.++.+-| .+|.
T Consensus 225 ~~i~vP~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 225 DKIDVPVLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp GG--SEEEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred hhCCCCEEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 4678999999999997777 88889999999988 677888887 4774
No 114
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=93.46 E-value=0.16 Score=33.75 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=43.4
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCC-C-CeEEEEeCCCCCC-ChH-------HHHHHHHHHHh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV-K-NVTFNTYSGLQHS-SNP-------ELKQVSTRLEN 68 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g-~-~v~~~~y~g~~H~-~~~-------~~~~v~~wl~~ 68 (86)
.++++|-+-|+.|++..+.++.. +..||..= . ....++.+|.||- +++ ..+.+.+||.+
T Consensus 133 ~~taLlTVEGe~DDIsg~GQT~A-A~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 133 RRTALLTVEGERDDISGPGQTHA-AHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred ccceeEEeecCcccCCcchHHHH-HHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 56788889999999999998866 55566432 2 4567778999994 443 35778888864
No 115
>KOG2237|consensus
Probab=93.35 E-value=0.38 Score=37.17 Aligned_cols=63 Identities=16% Similarity=0.018 Sum_probs=48.7
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCC-------CCeEEEEeCCCCCCChH-------HHHHHHHHHHhhhcCC
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFV-------KNVTFNTYSGLQHSSNP-------ELKQVSTRLENRALSG 73 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g-------~~v~~~~y~g~~H~~~~-------~~~~v~~wl~~~~~~~ 73 (86)
+.+|+..+.+|+.|++-.+.++...|+.+- .++-+++..++||+.-. +.....+||.+.+...
T Consensus 633 PS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~~ 709 (712)
T KOG2237|consen 633 PSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNSD 709 (712)
T ss_pred cceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcCc
Confidence 348999999999999877777777776431 35889999999998763 4567888998877643
No 116
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=93.31 E-value=0.21 Score=32.70 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
.--|.+++++.+|+.++++.++.+++.+-.+
T Consensus 116 lpfps~vvaSrnDp~~~~~~a~~~a~~wgs~ 146 (181)
T COG3545 116 LPFPSVVVASRNDPYVSYEHAEDLANAWGSA 146 (181)
T ss_pred CCCceeEEEecCCCCCCHHHHHHHHHhccHh
Confidence 3456899999999999999999999888753
No 117
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=93.23 E-value=0.15 Score=38.48 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCCCcEEEeecCCCCccChHHH-------HHHHHHHhcCCCCeEEEEeCCCCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWG-------QLTSSLLKGFVKNVTFNTYSGLQH 53 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~-------~~~~~~l~~~g~~v~~~~y~g~~H 53 (86)
++..||+++.|..|.+.|+.++ ..-.+.++..|-.+-+.+.+..||
T Consensus 295 ~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGH 347 (581)
T PF11339_consen 295 NIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGH 347 (581)
T ss_pred hCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCc
Confidence 5789999999999999999998 444567778888888889999999
No 118
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=92.90 E-value=0.22 Score=36.61 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
...++|++.+.|+.|.++|.+........+. .+++|...+ .||-
T Consensus 327 ~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~---g~~~f~l~~-sGHI 370 (445)
T COG3243 327 GDITCPVYNLAAEEDHIAPWSSVYLGARLLG---GEVTFVLSR-SGHI 370 (445)
T ss_pred hhcccceEEEeecccccCCHHHHHHHHHhcC---CceEEEEec-CceE
Confidence 4678999999999999999998766665544 378888886 7994
No 119
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=92.79 E-value=0.12 Score=36.88 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=42.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------~~~~v~~wl~~~~ 70 (86)
.+..|+||+|..+||++++...-..... ....|.+.+-+-+||--.. .-..+.+||+..+
T Consensus 272 ~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 272 KIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred ccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 5688999999999999998654443332 3347889998889994221 1345677776544
No 120
>KOG2521|consensus
Probab=92.59 E-value=0.6 Score=33.53 Aligned_cols=65 Identities=22% Similarity=0.044 Sum_probs=53.7
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH------HHHHHHHHHHhhhcCCC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP------ELKQVSTRLENRALSGN 74 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~------~~~~v~~wl~~~~~~~~ 74 (86)
..+.+.+.+..|.++|++..+++.+..++.|..++..-+.++-|.... -......|+.......+
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~~ 295 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSYN 295 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccccC
Confidence 455667779999999999999999999999999999999888886542 46788999998776554
No 121
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=92.44 E-value=0.19 Score=34.36 Aligned_cols=62 Identities=32% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCCCCCCcEEEeecC------CCCccChHHHHHHHHHHhcCCCCeEEEEeCC--CCCCChH----HHHHHHHHH
Q psy11078 5 GNPNVNTRFLQAHGD------CDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG--LQHSSNP----ELKQVSTRL 66 (86)
Q Consensus 5 ~~~~~~~Pili~hG~------~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g--~~H~~~~----~~~~v~~wl 66 (86)
.....+..||.+.|. .|.+||...++.+.-.++......+-.++.| +.|.-.. ....+.+||
T Consensus 179 ~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~~V~~~I~~FL 252 (255)
T PF06028_consen 179 KNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENPQVDKLIIQFL 252 (255)
T ss_dssp GGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCHHHHHHHHHHH
T ss_pred hhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCHHHHHHHHHHh
Confidence 445667889999999 9999999999999888888777788888876 5898665 456677776
No 122
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=92.13 E-value=0.46 Score=32.40 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSS 55 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~ 55 (86)
...++++.|..|..||....+++.+++.....++.... +|.-|++
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 56899999999999999999888888875545565555 7888876
No 123
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=91.69 E-value=0.78 Score=33.85 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhc-----------------C----CC----------CeEEEEeCCCCCCChH-
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKG-----------------F----VK----------NVTFNTYSGLQHSSNP- 57 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~-----------------~----g~----------~v~~~~y~g~~H~~~~- 57 (86)
+.+||+++|..|-+||....+++.+.|.= . |. +..+....++||.+..
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d 443 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMD 443 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhh
Confidence 58999999999999999888888877751 1 11 3445556689998875
Q ss_pred ----HHHHHHHHHHh
Q psy11078 58 ----ELKQVSTRLEN 68 (86)
Q Consensus 58 ----~~~~v~~wl~~ 68 (86)
.+..+..|+..
T Consensus 444 ~P~~~~~~i~~fl~~ 458 (462)
T PTZ00472 444 QPAVALTMINRFLRN 458 (462)
T ss_pred HHHHHHHHHHHHHcC
Confidence 34556666643
No 124
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=91.46 E-value=0.83 Score=32.17 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=34.4
Q ss_pred EEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHH
Q psy11078 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRL 66 (86)
Q Consensus 14 li~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl 66 (86)
+..-|..+.+.++ -+.+++.|.+.|.+..|+.|+| ||...- .+.+.+.+|
T Consensus 243 l~~g~~~~~~~~p--Nr~L~~~L~~~g~~~~yre~~G-gHdw~~Wr~~l~~~L~~l 295 (299)
T COG2382 243 LTTGGEEGDFLRP--NRALAAQLEKKGIPYYYREYPG-GHDWAWWRPALAEGLQLL 295 (299)
T ss_pred eecCCccccccch--hHHHHHHHHhcCCcceeeecCC-CCchhHhHHHHHHHHHHh
Confidence 3334444444444 4589999999999999999998 998765 444444443
No 125
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=90.85 E-value=0.96 Score=31.62 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcC---------------C-----CC-eEEEEeCCCCCCChH----HHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGF---------------V-----KN-VTFNTYSGLQHSSNP----ELKQVST 64 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~---------------g-----~~-v~~~~y~g~~H~~~~----~~~~v~~ 64 (86)
+.+||++.|..|-+||....+.+.+.|.-. | .+ ..|.+.-|+||.... .+.-+..
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~~qP~~al~m~~~ 312 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAEYRPNETFIMFQR 312 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCCcCHHHHHHHHHH
Confidence 589999999999999999998888888621 1 12 444555579998743 4566677
Q ss_pred HHHh
Q psy11078 65 RLEN 68 (86)
Q Consensus 65 wl~~ 68 (86)
||..
T Consensus 313 fi~~ 316 (319)
T PLN02213 313 WISG 316 (319)
T ss_pred HHcC
Confidence 7754
No 126
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=90.61 E-value=0.29 Score=37.60 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHh-cC-CC--CeEEEEeCCCCCCC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLK-GF-VK--NVTFNTYSGLQHSS 55 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~-~~-g~--~v~~~~y~g~~H~~ 55 (86)
..|.+++||+.|.++|+.++-+-|-.+- .. |. .+.|++..++-|.-
T Consensus 555 GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHfD 604 (690)
T PF10605_consen 555 GKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHFD 604 (690)
T ss_pred CCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeech
Confidence 6799999999999999987666665553 22 43 67888888877753
No 127
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=90.51 E-value=1.4 Score=31.95 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=44.1
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEe-CCCCCCChH-H----HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTY-SGLQHSSNP-E----LKQVSTRLE 67 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y-~g~~H~~~~-~----~~~v~~wl~ 67 (86)
..+.|+|++--+.|.+.|++..+++.+.|...+. ++.+ ...||.-+. + .+.+.+||.
T Consensus 304 ~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~~~~~~i~~fL~ 366 (368)
T COG2021 304 RIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESEAVGPLIRKFLA 366 (368)
T ss_pred cCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchhhhhHHHHHHhh
Confidence 3569999999999999999999999999998765 4443 346896554 2 356677765
No 128
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=89.72 E-value=0.18 Score=33.22 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCCCcEEEeecCCCCccC----------hHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVP----------YMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp----------~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl 66 (86)
....++++..|..|.... ......+.+.|+..|.+..++.|+ ++|...- .+.+.+.|+
T Consensus 181 ~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-G~H~~~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 181 KKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPHTYHVFP-GGHDWAYWRRRLPDALPWM 251 (251)
T ss_dssp TSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTTESEEEH-SESSHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCceEEEec-CccchhhHHHHHHHHHhhC
Confidence 456779999999999432 233445555666778899999999 5887655 678877775
No 129
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=89.11 E-value=0.74 Score=32.50 Aligned_cols=58 Identities=26% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCC----------------------CCeEEEEeCCCCCCChH-----HHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV----------------------KNVTFNTYSGLQHSSNP-----ELKQV 62 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g----------------------~~v~~~~y~g~~H~~~~-----~~~~v 62 (86)
+.+||+++|..|-+||...++.+.+.|.-.+ .+..|....|+||.+.. .+.-+
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHH
Confidence 3889999999999999999998888764211 13456777789999876 35556
Q ss_pred HHHHH
Q psy11078 63 STRLE 67 (86)
Q Consensus 63 ~~wl~ 67 (86)
..||.
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 66664
No 130
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=88.33 E-value=1.2 Score=29.26 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
.-..+|.+|.||+.|+.-..+.. +...- ..+++.++.+++.|.+-+
T Consensus 139 ~gl~tPtli~qGtrD~fGtr~~V---a~y~l--s~~iev~wl~~adHDLkp 184 (213)
T COG3571 139 TGLKTPTLITQGTRDEFGTRDEV---AGYAL--SDPIEVVWLEDADHDLKP 184 (213)
T ss_pred cCCCCCeEEeecccccccCHHHH---Hhhhc--CCceEEEEeccCcccccc
Confidence 34678999999999999777654 21111 127899999999998754
No 131
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=88.28 E-value=1.5 Score=32.18 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcC---------------C-----CC-eEEEEeCCCCCCChH----HHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGF---------------V-----KN-VTFNTYSGLQHSSNP----ELKQVST 64 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~---------------g-----~~-v~~~~y~g~~H~~~~----~~~~v~~ 64 (86)
+.+||++.|..|-+||+...+.+.+.|.-. | .+ ..|.+.-|+||.... .+.-+..
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp~qP~~al~m~~~ 426 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAEYRPNETFIMFQR 426 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999888887521 1 12 455555679998743 4556667
Q ss_pred HHHh
Q psy11078 65 RLEN 68 (86)
Q Consensus 65 wl~~ 68 (86)
||..
T Consensus 427 Fi~~ 430 (433)
T PLN03016 427 WISG 430 (433)
T ss_pred HHcC
Confidence 7753
No 132
>KOG4388|consensus
Probab=87.85 E-value=1.3 Score=34.31 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
=+|+.|+....||+. +...-|+..|+..|..+.+.+.++.-|++.+
T Consensus 787 LPp~~i~ac~mDP~L--DD~vmfA~kLr~lG~~v~l~vle~lPHGFLn 832 (880)
T KOG4388|consen 787 LPPVHIVACAMDPML--DDSVMFARKLRNLGQPVTLRVLEDLPHGFLN 832 (880)
T ss_pred CCCceEEEeccCcch--hHHHHHHHHHHhcCCceeehhhhcCCcccee
Confidence 356899999999985 4566789999999999999999999999986
No 133
>PLN02209 serine carboxypeptidase
Probab=86.53 E-value=2.3 Score=31.29 Aligned_cols=59 Identities=24% Similarity=0.170 Sum_probs=42.8
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcC---------------C-----CC-eEEEEeCCCCCCChH----HHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGF---------------V-----KN-VTFNTYSGLQHSSNP----ELKQVST 64 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~---------------g-----~~-v~~~~y~g~~H~~~~----~~~~v~~ 64 (86)
+.+||++.|..|-+||...++.+.+.|.-. | .+ ..|...-|+||.... .+.-+..
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp~qP~~al~m~~~ 430 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAEYLPEESSIMFQR 430 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcCcCHHHHHHHHHH
Confidence 579999999999999999999988888621 1 12 455555679998743 3555666
Q ss_pred HHHh
Q psy11078 65 RLEN 68 (86)
Q Consensus 65 wl~~ 68 (86)
||..
T Consensus 431 fi~~ 434 (437)
T PLN02209 431 WISG 434 (437)
T ss_pred HHcC
Confidence 7643
No 134
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=84.94 E-value=3.1 Score=28.80 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCC----CCCCChH------HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG----LQHSSNP------ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g----~~H~~~~------~~~~v~~wl 66 (86)
...+||+.+...+|+.+|+...+.|.+...++ +++.+.++. .||.-.. -.+++..|+
T Consensus 214 aVrtPi~~~~~~DD~w~P~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 214 AVRTPITFSRALDDPWAPPASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HhcCceeeeccCCCCcCCHHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 45789999999999999999999999988876 566666654 4784322 245566664
No 135
>KOG1838|consensus
Probab=84.20 E-value=1.6 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
-++..|+|.++..+||++|... .-.+..+++ .++-+.+-.-+||-
T Consensus 319 ~~I~VP~L~ina~DDPv~p~~~--ip~~~~~~n-p~v~l~~T~~GGHl 363 (409)
T KOG1838|consen 319 DKIKVPLLCINAADDPVVPEEA--IPIDDIKSN-PNVLLVITSHGGHL 363 (409)
T ss_pred ccccccEEEEecCCCCCCCccc--CCHHHHhcC-CcEEEEEeCCCcee
Confidence 3578999999999999999862 113333333 36777777778893
No 136
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=81.99 E-value=3.1 Score=23.25 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=29.7
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
.+.=|+++||-.+..--+ ..+++.|.+.|..|- .++--||+-+
T Consensus 15 ~k~~v~i~HG~~eh~~ry---~~~a~~L~~~G~~V~--~~D~rGhG~S 57 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRY---AHLAEFLAEQGYAVF--AYDHRGHGRS 57 (79)
T ss_pred CCEEEEEeCCcHHHHHHH---HHHHHHHHhCCCEEE--EECCCcCCCC
Confidence 345589999997766543 367888888877654 4555577655
No 137
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=81.35 E-value=6 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.059 Sum_probs=31.1
Q ss_pred HHHHHHHHHhc-CCCCeEEEEeCCCCCCChH--HHHHHHHHHHh
Q psy11078 28 WGQLTSSLLKG-FVKNVTFNTYSGLQHSSNP--ELKQVSTRLEN 68 (86)
Q Consensus 28 ~~~~~~~~l~~-~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~ 68 (86)
.+.+..+.+++ .|..+.|..+|+.+|+... .+..+..|+..
T Consensus 217 ~~~~~~~~~~~~~g~~~~f~~~~~~~H~~~~~~~~~~al~~l~~ 260 (264)
T COG2819 217 EAAELSSLLEKRTGARLVFQEEPLEHHGSVIHASLPSALRFLDC 260 (264)
T ss_pred HHHHHHHHHhhccCCceEecccccccccchHHHHHHHHHHhhhc
Confidence 34445555566 7889999999999998665 78888888864
No 138
>KOG1282|consensus
Probab=80.33 E-value=6.5 Score=29.30 Aligned_cols=59 Identities=27% Similarity=0.273 Sum_probs=42.1
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCC---------------------CeEEEEeCCCCCCChH-----HHHHHHH
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK---------------------NVTFNTYSGLQHSSNP-----ELKQVST 64 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~---------------------~v~~~~y~g~~H~~~~-----~~~~v~~ 64 (86)
.++||+.|..|-+||+-..+.+.+.|..... +..|.+.-|+||.... .+.-+..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999999999988887766642111 1333445589997764 3566778
Q ss_pred HHHhh
Q psy11078 65 RLENR 69 (86)
Q Consensus 65 wl~~~ 69 (86)
||...
T Consensus 444 fl~g~ 448 (454)
T KOG1282|consen 444 FLNGQ 448 (454)
T ss_pred HHcCC
Confidence 88754
No 139
>COG1647 Esterase/lipase [General function prediction only]
Probab=79.56 E-value=3.4 Score=28.27 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=33.2
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+..+|++||=-- .++..+.+.+.|.++|..+..=.|| ||+..+
T Consensus 15 ~~AVLllHGFTG---t~~Dvr~Lgr~L~e~GyTv~aP~yp--GHG~~~ 57 (243)
T COG1647 15 NRAVLLLHGFTG---TPRDVRMLGRYLNENGYTVYAPRYP--GHGTLP 57 (243)
T ss_pred CEEEEEEeccCC---CcHHHHHHHHHHHHCCceEecCCCC--CCCCCH
Confidence 356888888543 4677788999999999888888898 666665
No 140
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=79.30 E-value=4.9 Score=24.58 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=31.8
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcC-CCCeEEEEeCC
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGF-VKNVTFNTYSG 50 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~-g~~v~~~~y~g 50 (86)
++|||.+.. |.--..+...+|++.|++. |.+|.+-.|..
T Consensus 1 ~kVfI~Ys~-d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~ 40 (150)
T PF08357_consen 1 RKVFISYSH-DSEEHKEWVLALAEFLRQNCGIDVILDQWEL 40 (150)
T ss_pred CeEEEEeCC-CCHHHHHHHHHHHHHHHhccCCceeecHHhh
Confidence 368999988 5555668899999999999 99999888763
No 141
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=79.00 E-value=4 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=30.6
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
+.++.+++|..||......+.+.+. ..+.+..+| ||-..
T Consensus 292 ii~V~A~~DaYVPr~~v~~Lq~~WP----GsEvR~l~g-GHVsA 330 (348)
T PF09752_consen 292 IIFVAAKNDAYVPRHGVLSLQEIWP----GSEVRYLPG-GHVSA 330 (348)
T ss_pred EEEEEecCceEechhhcchHHHhCC----CCeEEEecC-CcEEE
Confidence 7889999999999987776666555 567777886 99654
No 142
>PLN00021 chlorophyllase
Probab=78.25 E-value=4 Score=28.61 Aligned_cols=47 Identities=11% Similarity=-0.066 Sum_probs=31.0
Q ss_pred CCCCCCCcEEEeecCCCC-----c----cChHHH-HHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 5 GNPNVNTRFLQAHGDCDP-----I----VPYMWG-QLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~-----v----Vp~~~~-~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
++.+...|+|++++..|. + .|.... .++++..+. +..+..-++.||.
T Consensus 184 ~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~~~gH~ 240 (313)
T PLN00021 184 HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAKDYGHM 240 (313)
T ss_pred ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---CeeeeeecCCCcc
Confidence 344577999999999763 3 334333 556655543 6777777788884
No 143
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=78.03 E-value=7.8 Score=22.69 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=34.3
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHH
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLE 67 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~ 67 (86)
||+++||.... ......+.+.|.+.|..+-...|++ |.... ...++.+++.
T Consensus 1 ~vv~~HG~~~~---~~~~~~~~~~l~~~G~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS---RRDYQPLAEALAEQGYAVVAFDYPG--HGDSDGADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT---THHHHHHHHHHHHTTEEEEEESCTT--STTSHHSHHHHHHHHHHH
T ss_pred CEEEECCCCCC---HHHHHHHHHHHHHCCCEEEEEecCC--CCccchhHHHHHHHHHHH
Confidence 68999999874 4445578888888887776666664 44334 4556666654
No 144
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=76.12 E-value=8.7 Score=25.74 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=31.6
Q ss_pred CCcEEEeecCCC-CccChHHHHHHHHHHhcCCCC---eEEEEeCCCCCCChH--------HHHHHHHHHHhhhcC
Q psy11078 10 NTRFLQAHGDCD-PIVPYMWGQLTSSLLKGFVKN---VTFNTYSGLQHSSNP--------ELKQVSTRLENRALS 72 (86)
Q Consensus 10 ~~Pili~hG~~D-~vVp~~~~~~~~~~l~~~g~~---v~~~~y~g~~H~~~~--------~~~~v~~wl~~~~~~ 72 (86)
+.||+++||... .-.... .++..|++.|.. +--..|-+....... ...++..|+++.+..
T Consensus 1 ~~PVVlVHG~~~~~~~~w~---~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~ 72 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWS---TLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY 72 (219)
T ss_dssp S--EEEE--TTTTTCGGCC---HHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCcchhhCHH---HHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHh
Confidence 469999999997 333333 557778888864 444556432221111 135789999987753
No 145
>KOG2624|consensus
Probab=76.11 E-value=5.1 Score=29.38 Aligned_cols=62 Identities=16% Similarity=-0.032 Sum_probs=42.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh-------H-HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN-------P-ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~-------~-~~~~v~~wl~~~ 69 (86)
.+.+.|+.+++|..|.++.++....+...+..... ......++-.|--. . ..+.+.+.+...
T Consensus 329 ~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 329 TNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred cccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 45589999999999999999999988888876544 22222455556322 2 345566666543
No 146
>KOG3975|consensus
Probab=75.97 E-value=6.7 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=32.1
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
.-+.+++|..|..||......+.+.+.+. ++++-. .+..|++--
T Consensus 243 d~l~Fyygt~DgW~p~~~~d~~kdd~~ee--d~~Lde-dki~HAFV~ 286 (301)
T KOG3975|consen 243 DSLWFYYGTNDGWVPSHYYDYYKDDVPEE--DLKLDE-DKIPHAFVV 286 (301)
T ss_pred cEEEEEccCCCCCcchHHHHHHhhhcchh--ceeecc-ccCCcceee
Confidence 45789999999999988777777666643 455555 567887654
No 147
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=74.23 E-value=7.8 Score=30.30 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCC---CeEEEEeCCCCCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK---NVTFNTYSGLQHS 54 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~---~v~~~~y~g~~H~ 54 (86)
+.-+|+|+..|..|+.|.+=...+....|+..+. ++-+++-=++||+
T Consensus 607 ~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHg 656 (682)
T COG1770 607 QPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHG 656 (682)
T ss_pred CCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCC
Confidence 4557899999999999999777777888876554 4667774458995
No 148
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=72.48 E-value=13 Score=20.90 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=26.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhc----CCCCeEEE
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKG----FVKNVTFN 46 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~----~g~~v~~~ 46 (86)
...+|.|++++.....++....+-+...+++ .|+++.+.
T Consensus 36 ~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~ 78 (80)
T PF14714_consen 36 GTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLI 78 (80)
T ss_dssp ETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEE
T ss_pred CCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEE
Confidence 4678999999999999999988888888876 35555543
No 149
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=71.95 E-value=20 Score=25.20 Aligned_cols=61 Identities=30% Similarity=0.219 Sum_probs=46.7
Q ss_pred CCCCCcEEEeecCC------CCccChHHHHHHHHHHhcCCCCeEEEEeCC--CCCCChH----HHHHHHHHHH
Q psy11078 7 PNVNTRFLQAHGDC------DPIVPYMWGQLTSSLLKGFVKNVTFNTYSG--LQHSSNP----ELKQVSTRLE 67 (86)
Q Consensus 7 ~~~~~Pili~hG~~------D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g--~~H~~~~----~~~~v~~wl~ 67 (86)
+..++-+|++.|+. |..||...+...+..+..++..+.-.+|+| +.|.-.. ....+..||-
T Consensus 213 v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lhen~~v~~yv~~FLw 285 (288)
T COG4814 213 VSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLHENPTVAKYVKNFLW 285 (288)
T ss_pred CCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccCCChhHHHHHHHHhh
Confidence 45667789999974 678999999999999998887787778876 4676443 5667777774
No 150
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=71.22 E-value=27 Score=23.52 Aligned_cols=43 Identities=21% Similarity=-0.013 Sum_probs=30.0
Q ss_pred CCcEEEeecCCCCcc-ChHHHHHHHHHHhcCCCCeEEEEeCCCC
Q psy11078 10 NTRFLQAHGDCDPIV-PYMWGQLTSSLLKGFVKNVTFNTYSGLQ 52 (86)
Q Consensus 10 ~~Pili~hG~~D~vV-p~~~~~~~~~~l~~~g~~v~~~~y~g~~ 52 (86)
..+++++||..|..+ .......+.+.|.+.|..+-..-++|-|
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G 69 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMG 69 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 457888888877665 4455567888888888777666666544
No 151
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=70.35 E-value=4.2 Score=30.06 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=40.0
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
....|=+|+.+..|+..+++.+...++.|.. ..-++..|+..|.+.+
T Consensus 327 RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN~~H~~~n 373 (507)
T COG4287 327 RLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPNDPHNLIN 373 (507)
T ss_pred hccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCCCcchhhH
Confidence 3457888999999999999999888888874 5668888999999887
No 152
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=69.31 E-value=1.8 Score=31.55 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSG 50 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g 50 (86)
....|+|+..|..|...|. .++.|+.+. .+-+++++.||+
T Consensus 304 iAPRPll~~nG~~Dklf~i--V~~AY~~~~-~p~n~~~~~~p~ 343 (390)
T PF12715_consen 304 IAPRPLLFENGGKDKLFPI--VRRAYAIMG-APDNFQIHHYPK 343 (390)
T ss_dssp TTTS-EEESS-B-HHHHHH--HHHHHHHTT--GGGEEE---GG
T ss_pred hCCCcchhhcCCcccccHH--HHHHHHhcC-CCcceEEeeccc
Confidence 4568999999999998876 334444322 223799999996
No 153
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=68.68 E-value=27 Score=26.15 Aligned_cols=62 Identities=10% Similarity=-0.110 Sum_probs=39.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh----------H------HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN----------P------ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~----------~------~~~~v~~wl~~~~~ 71 (86)
+.++|+|++.|=.|. -...+.+.++.+...+ +.++.+=| .+|... . .......|++..|.
T Consensus 230 ~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGp-w~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~Lk 305 (550)
T TIGR00976 230 GSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGP-WTHSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRHLK 305 (550)
T ss_pred CCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEcc-CCCCCcccccCCCccCccccccchhhhhHHHHHHHhC
Confidence 578999999999993 4445556666666543 45555444 456511 0 01146899999998
Q ss_pred CC
Q psy11078 72 SG 73 (86)
Q Consensus 72 ~~ 73 (86)
+.
T Consensus 306 g~ 307 (550)
T TIGR00976 306 GG 307 (550)
T ss_pred CC
Confidence 54
No 154
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=68.52 E-value=4.4 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=9.1
Q ss_pred CCCCCCCcEEEeecCCCC
Q psy11078 5 GNPNVNTRFLQAHGDCDP 22 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~ 22 (86)
.....+.|||++||-.+.
T Consensus 38 ~~~~~k~pVll~HGL~~s 55 (63)
T PF04083_consen 38 NQNKKKPPVLLQHGLLQS 55 (63)
T ss_dssp TTTTT--EEEEE--TT--
T ss_pred ccCCCCCcEEEECCcccC
Confidence 355677889999997653
No 155
>KOG4627|consensus
Probab=65.95 E-value=8.3 Score=26.41 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~ 69 (86)
...|+|++.|+.|.---+++.+.+++.+++ ..+..|++.+|.--. .-.++..||.+.
T Consensus 206 v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~ 267 (270)
T KOG4627|consen 206 VTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHYDIIEETAIDDSDVSRFLRNI 267 (270)
T ss_pred ceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchhhHHHHhccccchHHHHHHHH
Confidence 457899999999998889999999998885 678899999996443 124556666543
No 156
>COG3150 Predicted esterase [General function prediction only]
Probab=64.48 E-value=15 Score=24.23 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=36.2
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---HHHHHHHHHH
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---ELKQVSTRLE 67 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---~~~~v~~wl~ 67 (86)
+++..-+.|.+..+..+.+.+.. ....+.+|+.|.+.. -+..+..|+.
T Consensus 137 ~~lL~qtgDEvLDyr~a~a~y~~-------~~~~V~dgg~H~F~~f~~~l~~i~aF~g 187 (191)
T COG3150 137 LVLLSQTGDEVLDYRQAVAYYHP-------CYEIVWDGGDHKFKGFSRHLQRIKAFKG 187 (191)
T ss_pred EEeecccccHHHHHHHHHHHhhh-------hhheeecCCCccccchHHhHHHHHHHhc
Confidence 66667777999999987666643 335677889999887 5788888864
No 157
>PLN02606 palmitoyl-protein thioesterase
Probab=63.15 E-value=52 Score=23.41 Aligned_cols=40 Identities=13% Similarity=-0.100 Sum_probs=29.6
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhc-CCCCeEEEEe
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKG-FVKNVTFNTY 48 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~-~g~~v~~~~y 48 (86)
...+|+.++||--|...+. ....+.+.+.+ .+.++.+...
T Consensus 24 ~~~~PvViwHGlgD~~~~~-~~~~~~~~i~~~~~~pg~~v~i 64 (306)
T PLN02606 24 SLSVPFVLFHGFGGECSNG-KVSNLTQFLINHSGYPGTCVEI 64 (306)
T ss_pred CCCCCEEEECCCCcccCCc-hHHHHHHHHHhCCCCCeEEEEE
Confidence 3579999999999998876 66677777763 3666655543
No 158
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=63.00 E-value=27 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeE-EEEeCCCCCCChH-HHHHHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVT-FNTYSGLQHSSNP-ELKQVSTRL 66 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~-~~~y~g~~H~~~~-~~~~v~~wl 66 (86)
-.+.|++.+.|..+| +.|.+.|++.|..+. ...||+ -|.++. .++.+....
T Consensus 225 l~~~~v~a~sGIg~P-------~~F~~~L~~~G~~~~~~~~f~D-Hh~yt~~dl~~l~~~a 277 (326)
T PF02606_consen 225 LKGKPVLAFSGIGNP-------ERFFDTLESLGIEVVGTLAFPD-HHRYTEQDLEKLEAEA 277 (326)
T ss_pred ccCCeeEEEEEcCCh-------HHHHHHHHHcCCeEEEeeECCC-CCCCCHHHHHHHHHhh
Confidence 355677777777665 488999999998765 888985 566666 666666543
No 159
>PRK10673 acyl-CoA esterase; Provisional
Probab=60.98 E-value=42 Score=21.56 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH---------HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP---------ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~---------~~~~v~~wl~~ 68 (86)
..++|++++||..+..-.. ..+...|.+ ......++--||+.+. ..+++.+++..
T Consensus 14 ~~~~~iv~lhG~~~~~~~~---~~~~~~l~~---~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~ 77 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLDNL---GVLARDLVN---DHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDA 77 (255)
T ss_pred CCCCCEEEECCCCCchhHH---HHHHHHHhh---CCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567899999987664222 234555543 2344444434554321 34566666654
No 160
>PRK10749 lysophospholipase L2; Provisional
Probab=58.95 E-value=57 Score=22.49 Aligned_cols=42 Identities=12% Similarity=-0.058 Sum_probs=26.0
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCC
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H 53 (86)
.+.+|+++||-..... .-..+...+.+.|..+-..-++|-|.
T Consensus 53 ~~~~vll~HG~~~~~~---~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 53 HDRVVVICPGRIESYV---KYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred CCcEEEEECCccchHH---HHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 4567999999865432 23345666667777675555665443
No 161
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=58.59 E-value=34 Score=23.69 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=38.2
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh-----------H-HHHHHHHHHHhhh
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN-----------P-ELKQVSTRLENRA 70 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~-----------~-~~~~v~~wl~~~~ 70 (86)
--|+++||..+...-|. .+++.|..+|..|-..-.+ ||+.+ . ...++..|++...
T Consensus 35 g~Vvl~HG~~Eh~~ry~---~la~~l~~~G~~V~~~D~R--GhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~ 101 (298)
T COG2267 35 GVVVLVHGLGEHSGRYE---ELADDLAARGFDVYALDLR--GHGRSPRGQRGHVDSFADYVDDLDAFVETIA 101 (298)
T ss_pred cEEEEecCchHHHHHHH---HHHHHHHhCCCEEEEecCC--CCCCCCCCCcCCchhHHHHHHHHHHHHHHHh
Confidence 44899999999887766 4788888988766555555 55544 1 3567777776554
No 162
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=57.62 E-value=15 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=24.9
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLK 37 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~ 37 (86)
.++|+|+++|.+|.+|--+...++...++
T Consensus 211 ~~ikvli~ygg~DhLIEeeI~~E~a~~f~ 239 (297)
T PF06342_consen 211 KPIKVLIAYGGKDHLIEEEISFEFAMKFK 239 (297)
T ss_pred CCCcEEEEEcCcchhhHHHHHHHHHHHhC
Confidence 34899999999999999998888877665
No 163
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=57.52 E-value=7.2 Score=22.06 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=20.0
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCe
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNV 43 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v 43 (86)
||+.|...|. ..+..+.+.|.+.|.++
T Consensus 1 VFIS~~~~D~----~~a~~l~~~L~~~g~~v 27 (102)
T PF13676_consen 1 VFISYSSEDR----EFAERLAERLESAGIRV 27 (102)
T ss_dssp EEEEEEGGGC----CCHHHHHHHHHHTT--E
T ss_pred eEEEecCCcH----HHHHHHHHHHhhcCCEE
Confidence 6889999883 36778899998888754
No 164
>PRK10985 putative hydrolase; Provisional
Probab=57.03 E-value=62 Score=22.29 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=29.2
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQ 52 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~ 52 (86)
.+.++++||-....-. .....+.+.|.+.|..+-..-|.|.|
T Consensus 58 ~p~vll~HG~~g~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~g 99 (324)
T PRK10985 58 KPRLVLFHGLEGSFNS-PYAHGLLEAAQKRGWLGVVMHFRGCS 99 (324)
T ss_pred CCEEEEeCCCCCCCcC-HHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4569999998765322 34566788888888877776776543
No 165
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=55.01 E-value=13 Score=27.46 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=39.0
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh----H----HHHHHHHHHHhh
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN----P----ELKQVSTRLENR 69 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~----~----~~~~v~~wl~~~ 69 (86)
.....|++|+.|.-|.+-+- ....+.+.+...|+.+-..-.||.|+... . ....+++||...
T Consensus 186 ~~~p~P~VIv~gGlDs~qeD-~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~ 255 (411)
T PF06500_consen 186 GEKPYPTVIVCGGLDSLQED-LYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASR 255 (411)
T ss_dssp SSS-EEEEEEE--TTS-GGG-GHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCcchhHHH-HHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcC
Confidence 45677999999999998653 23344556778898888888999988532 1 367888888763
No 166
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=54.20 E-value=18 Score=25.28 Aligned_cols=34 Identities=15% Similarity=-0.021 Sum_probs=17.4
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g 40 (86)
.....|+.|+||--|....+.....+.+.+++..
T Consensus 2 ~~~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~ 35 (279)
T PF02089_consen 2 PPSPLPVVIWHGMGDSCCNPSSMGSIKELIEEQH 35 (279)
T ss_dssp TTSS--EEEE--TT--S--TTTHHHHHHHHHHHS
T ss_pred CCCCCcEEEEEcCccccCChhHHHHHHHHHHHhC
Confidence 3467899999999999876655555566665543
No 167
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=54.17 E-value=35 Score=24.19 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=36.6
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCC-eEEEE---eCCCCCCChH----HHHHHHHHHHhhh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKN-VTFNT---YSGLQHSSNP----ELKQVSTRLENRA 70 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~-v~~~~---y~g~~H~~~~----~~~~v~~wl~~~~ 70 (86)
.--++++.|--|.....+....+++.|...+.. ++... |.|-|..... ++..+.++|...-
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHHHHHHHHHHHHHhh
Confidence 334888999999998888888999999877763 33333 7788877665 5777788887663
No 168
>KOG4840|consensus
Probab=53.71 E-value=63 Score=22.53 Aligned_cols=64 Identities=9% Similarity=-0.025 Sum_probs=38.7
Q ss_pred CCCCcEEEeecCCCCccChHH-HHHHHHHHhcC-CCCeEEEEeCCCCCCChH----HHHHHHHHHHhhhcC
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMW-GQLTSSLLKGF-VKNVTFNTYSGLQHSSNP----ELKQVSTRLENRALS 72 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~-~~~~~~~l~~~-g~~v~~~~y~g~~H~~~~----~~~~v~~wl~~~~~~ 72 (86)
+....+++.-|+.|..||+.. .+.+..++.+. +.+-..+... +.|...+ .-.++..|+.+....
T Consensus 223 ta~~qiif~ms~rDEyv~~~~dkk~llnR~s~~~r~~e~~~~ls-g~~~~~n~~~~~sqei~k~i~~~~~s 292 (299)
T KOG4840|consen 223 TAGAQIIFVMSGRDEYVKADIDKKLLLNRNSRVERIPEGTHVLS-GAEDVENFLGFLSQEIEKAIGQKAQS 292 (299)
T ss_pred CCCceEEEEecCcccccCcchHHHHHHHhhhhhccCCccccccc-ccccHhhhhhhhhHHHHHHHHhcCCC
Confidence 345567888888899998744 44456666543 3333333333 3444444 357889999876653
No 169
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=52.01 E-value=33 Score=19.15 Aligned_cols=27 Identities=11% Similarity=-0.171 Sum_probs=16.3
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
+++.||..++--.......+.+.+++.
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~ 29 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAES 29 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHH
Confidence 567788887632234555666666553
No 170
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=51.13 E-value=55 Score=20.00 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=23.8
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCC-CeEEEEeCCCCCCChH
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVK-NVTFNTYSGLQHSSNP 57 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~-~v~~~~y~g~~H~~~~ 57 (86)
|||.||+ |. .....+...|++.+. ++.|..-++.|..+..
T Consensus 2 VFIvhg~-~~----~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie 42 (125)
T PF10137_consen 2 VFIVHGR-DL----AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIE 42 (125)
T ss_pred EEEEeCC-CH----HHHHHHHHHHHhCCCceEEeecCCCCCCchHH
Confidence 7999994 43 333456666666665 4555555555654443
No 171
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=49.67 E-value=21 Score=25.77 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=44.7
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCC--CeEEEEeCCCCCC-ChH-------HHHHHHHHHHhhhc
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK--NVTFNTYSGLQHS-SNP-------ELKQVSTRLENRAL 71 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~--~v~~~~y~g~~H~-~~~-------~~~~v~~wl~~~~~ 71 (86)
-.++.+|-+-|+.|++--..++++ +..||.+-. ....+.-|+.||- +.+ ..+.+.+|+.+.-.
T Consensus 337 I~~~aL~tvEGEnDDIsgvGQTkA-A~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d~ 409 (415)
T COG4553 337 ITNVALFTVEGENDDISGVGQTKA-AHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYDR 409 (415)
T ss_pred eeceeEEEeecccccccccchhHH-HHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhCc
Confidence 345678889999999988888755 566776533 3456677999994 333 35778899886543
No 172
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=49.08 E-value=14 Score=19.79 Aligned_cols=30 Identities=20% Similarity=0.001 Sum_probs=23.3
Q ss_pred cCCCCccChHHHHHHHHHHhcCCCCeEEEE
Q psy11078 18 GDCDPIVPYMWGQLTSSLLKGFVKNVTFNT 47 (86)
Q Consensus 18 G~~D~vVp~~~~~~~~~~l~~~g~~v~~~~ 47 (86)
+..|-+||+.....+.+.|.+.|...+..+
T Consensus 34 ~~~dv~V~p~~~~~f~~~L~~~~i~~~v~i 63 (74)
T PF02244_consen 34 RPVDVMVPPEKLEEFEELLKEHGIEYEVLI 63 (74)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHTT-EEEEEE
T ss_pred CeEEEEECHHHHHHHHHHHHHCCCcEEEEe
Confidence 446778999999999999999877665544
No 173
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=48.21 E-value=1e+02 Score=22.27 Aligned_cols=41 Identities=12% Similarity=-0.060 Sum_probs=26.9
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCC
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQ 52 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~ 52 (86)
...+|+++||-.+. ...-..+++.|.+.|..+-..-++|.|
T Consensus 135 ~~~~Vl~lHG~~~~---~~~~~~~a~~L~~~Gy~V~~~D~rGhG 175 (395)
T PLN02652 135 MRGILIIIHGLNEH---SGRYLHFAKQLTSCGFGVYAMDWIGHG 175 (395)
T ss_pred CceEEEEECCchHH---HHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 34579999998764 222346778887777766666666433
No 174
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=47.41 E-value=23 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCCeEEEEeCCCCCCChH-HHHHHHHHHHhhhc
Q psy11078 40 VKNVTFNTYSGLQHSSNP-ELKQVSTRLENRAL 71 (86)
Q Consensus 40 g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~~ 71 (86)
|.-+....|+ ||.-.. |.+.+.+|+...-+
T Consensus 85 gG~i~iv~Y~--GH~gG~eE~~av~~~~~~L~~ 115 (140)
T PF06962_consen 85 GGIITIVVYP--GHPGGKEESEAVEEFLASLDQ 115 (140)
T ss_dssp EEEEEEEE----STCHHHHHHHHHHHHHHTS-T
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHHhCCc
Confidence 4468899998 898888 89999999986543
No 175
>KOG2872|consensus
Probab=46.40 E-value=31 Score=24.71 Aligned_cols=52 Identities=27% Similarity=0.350 Sum_probs=33.3
Q ss_pred EEeecCCCCccChHH----HHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHh
Q psy11078 14 LQAHGDCDPIVPYMW----GQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLEN 68 (86)
Q Consensus 14 li~hG~~D~vVp~~~----~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~ 68 (86)
.-.+|.-||-+-+.. .....+.+++.| .-+...+.||++.. .-+.+.-|++.
T Consensus 295 VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG---~~ryI~NLGHGi~p~tp~e~v~~f~E~ 352 (359)
T KOG2872|consen 295 VTLQGNLDPGVLYGSKEEITQLVKQMVKDFG---KSRYIANLGHGITPGTPPEHVAHFVEA 352 (359)
T ss_pred eEEecCCChHHhcCCHHHHHHHHHHHHHHhC---ccceEEecCCCCCCCCCHHHHHHHHHH
Confidence 456899999887643 334445556666 33444579999998 34555666654
No 176
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=45.72 E-value=72 Score=20.26 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=37.0
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLEN 68 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~ 68 (86)
..|+.+.....|+......-.....+......+++.+..+| +|..-. ...++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~ 227 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAE 227 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhc
Confidence 45688888999998877633232323344444788888885 997554 35555555554
No 177
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=45.07 E-value=1.1e+02 Score=21.54 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=33.6
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
..++++. |+.+.-.....+.+.|++.|.++.+..|++..-..+. .+.++.+++.+
T Consensus 21 ~~~livt---d~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 76 (344)
T TIGR01357 21 SKLVIIT---DETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLE 76 (344)
T ss_pred CeEEEEE---CCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 3456665 3433333566777888888887776778754433333 56666666654
No 178
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=44.83 E-value=83 Score=20.88 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHHHHh
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLEN 68 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~~ 68 (86)
..|++.++|.++.-.+.. .++. .+++....|| ||.+....+.+.+.|.+
T Consensus 139 ~~~v~CiyG~~E~d~~cp-------~l~~--~~~~~i~lpG-gHHfd~dy~~La~~Il~ 187 (192)
T PF06057_consen 139 PAPVQCIYGEDEDDSLCP-------SLRQ--PGVEVIALPG-GHHFDGDYDALAKRILD 187 (192)
T ss_pred CCeEEEEEcCCCCCCcCc-------cccC--CCcEEEEcCC-CcCCCCCHHHHHHHHHH
Confidence 358899999887653322 1222 2678888996 77776634444444443
No 179
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=44.06 E-value=1.2e+02 Score=21.80 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=27.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEE
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNT 47 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~ 47 (86)
+..++|++++-+ .|..=+.. .++.+.+++.|.++...-
T Consensus 247 v~~~~pvi~~~~-~d~tr~~~--~r~~~~~~~~ga~v~vi~ 284 (340)
T COG2222 247 VEEGTPVLLFVS-EDETRELD--ERALKFLKNYGAKVLVID 284 (340)
T ss_pred cCCCceEEEEec-CCcchhHH--HHHHHHHHhcCCeEEEEc
Confidence 467899999998 77765543 477888888877664433
No 180
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=43.39 E-value=19 Score=26.35 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.5
Q ss_pred CCCCcEEEeecCCCCcc
Q psy11078 8 NVNTRFLQAHGDCDPIV 24 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vV 24 (86)
+...|||++||..|.--
T Consensus 108 ~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 108 NVAIPVFSIHGNHDDPS 124 (405)
T ss_pred cCCCCEEEEcCCCCCcc
Confidence 36799999999999854
No 181
>PLN02633 palmitoyl protein thioesterase family protein
Probab=43.11 E-value=1.2e+02 Score=21.67 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=31.4
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcC-CCCeEEEEeC
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF-VKNVTFNTYS 49 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~-g~~v~~~~y~ 49 (86)
.+...+|+.++||--|....+ ....+.+.+.+. |..+.+...-
T Consensus 21 ~~~~~~P~ViwHG~GD~c~~~-g~~~~~~l~~~~~g~~~~~i~ig 64 (314)
T PLN02633 21 HVSVSVPFIMLHGIGTQCSDA-TNANFTQLLTNLSGSPGFCLEIG 64 (314)
T ss_pred cccCCCCeEEecCCCcccCCc-hHHHHHHHHHhCCCCceEEEEEC
Confidence 456679999999999999886 555677777553 5666665553
No 182
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=42.85 E-value=64 Score=23.10 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HH
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-EL 59 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~ 59 (86)
.+++++.|..+| +.|.+.|++.|..+..+.||+ -|.++. .+
T Consensus 244 ~~v~a~aGIgnP-------~~F~~~L~~~G~~~~~~~fpD-Hh~yt~~dl 285 (338)
T PRK01906 244 ERVLAAAGIGAP-------ERFFATLRAAGLAPATRALPD-HYAFADNPF 285 (338)
T ss_pred CeEEEEEECCCH-------HHHHHHHHHcCCceeEEeCCC-CCCCCHHHH
Confidence 456666666654 488999999998888888985 555665 44
No 183
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=42.77 E-value=75 Score=19.12 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=31.1
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHHHHh
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLEN 68 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~~ 68 (86)
.|.+++.|..-.--.+..+..+.+.+.+.|++.+-.+.+..+.....+......|+.+
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~ 92 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRE 92 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHh
Confidence 4555555555444455666677777777777554444433232222244455555554
No 184
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=40.79 E-value=78 Score=23.00 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=36.6
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh----H----HHHHHHHHHHhh
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN----P----ELKQVSTRLENR 69 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~----~----~~~~v~~wl~~~ 69 (86)
...|++++||.-|.... +.-..+.+.|.+.|..+-..-+||.|.... . ....+.+||...
T Consensus 192 ~~~P~Vli~gG~~~~~~-~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l~~~ 259 (414)
T PRK05077 192 GPFPTVLVCGGLDSLQT-DYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNALPNV 259 (414)
T ss_pred CCccEEEEeCCcccchh-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHHHhC
Confidence 45788888888775422 122345677888888776666776554321 1 234677777643
No 185
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=40.00 E-value=62 Score=19.15 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=18.5
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g 40 (86)
+|+.||..|+-- -.....+.+.+++.+
T Consensus 5 vlv~hGS~~~~~-~~~~~~~~~~l~~~~ 31 (126)
T PRK00923 5 LLVGHGSRLPYN-KEVVTKIAEKIKEKH 31 (126)
T ss_pred EEEeCCCCChHH-HHHHHHHHHHHHHhC
Confidence 688899998632 355566777776643
No 186
>KOG3101|consensus
Probab=38.69 E-value=81 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCcEEEeecCCCCccChHH-HHHHHHHHhcCC-CCeEEEEeCCCCCCCh
Q psy11078 10 NTRFLQAHGDCDPIVPYMW-GQLTSSLLKGFV-KNVTFNTYSGLQHSSN 56 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~-~~~~~~~l~~~g-~~v~~~~y~g~~H~~~ 56 (86)
..-|||-+|..|+..+-.. -+.+.++.++.. .++.++.-+|-+|.-.
T Consensus 215 ~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 215 GDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred CccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeecCCCccee
Confidence 3449999999999988222 223343333332 5899999999999643
No 187
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=37.59 E-value=31 Score=24.94 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=31.1
Q ss_pred EEeecCCCCccChHHHHHHHH---HHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHH
Q psy11078 14 LQAHGDCDPIVPYMWGQLTSS---LLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLE 67 (86)
Q Consensus 14 li~hG~~D~vVp~~~~~~~~~---~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~ 67 (86)
..++|.-||.+-+...+.+.+ ++-+.+.+..=++|. .||++.+ ..+.+..+++
T Consensus 286 ~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~Ifn-lGhGI~P~tp~e~v~~lve 343 (352)
T COG0407 286 VALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIFN-LGHGILPETPPENVKALVE 343 (352)
T ss_pred ceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCceec-CCCCcCCCCCHHHHHHHHH
Confidence 567999999555433333333 333334444566675 8999998 4444444444
No 188
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=37.26 E-value=57 Score=19.22 Aligned_cols=25 Identities=8% Similarity=-0.162 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEEeC
Q psy11078 25 PYMWGQLTSSLLKGFVKNVTFNTYS 49 (86)
Q Consensus 25 p~~~~~~~~~~l~~~g~~v~~~~y~ 49 (86)
.+..+..|.+.|+..|++++.....
T Consensus 9 n~r~AqaF~DYl~sqgI~~~i~~~~ 33 (101)
T PF12122_consen 9 NPRAAQAFIDYLASQGIELQIEPEG 33 (101)
T ss_dssp SHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred CHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3677899999999999887777754
No 189
>PF11394 DUF2875: Protein of unknown function (DUF2875); InterPro: IPR021531 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=37.23 E-value=1.1e+02 Score=23.06 Aligned_cols=63 Identities=8% Similarity=-0.015 Sum_probs=41.4
Q ss_pred CCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH--HHHHHHHHHHhhh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP--ELKQVSTRLENRA 70 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~--~~~~v~~wl~~~~ 70 (86)
.-..|+|+..--.+.-.++..+..+...-.+++.-+....+...-|.-.. +++.+..|++++.
T Consensus 77 yWPIPvf~~gPP~~~~~~~r~A~~I~~~R~~A~LGvtl~lwqed~nt~~~q~~iErLF~FFD~nP 141 (451)
T PF11394_consen 77 YWPIPVFAWGPPKPPDDPYRAASNINDGRQAAGLGVTLFLWQEDANTDHAQGMIERLFQFFDDNP 141 (451)
T ss_pred hCCCceEEeCCCCCccccccHHHHhhccccccccceeEEEeeccccccCHHHHHHHHHHHHhcCC
Confidence 45678998766666555554444444443455666766666555665555 8999999999764
No 190
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.10 E-value=50 Score=22.66 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=16.5
Q ss_pred CCCCcEEEeecCCCCccChHHHHH
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMWGQL 31 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~~~~ 31 (86)
.-+.++|++|| |..++......
T Consensus 103 l~g~~~Ll~HG--D~f~t~~~~y~ 124 (237)
T COG2908 103 LYGKRILLAHG--DTFCTDDRAYQ 124 (237)
T ss_pred ecCcEEEEEeC--CcccchHHHHH
Confidence 34578999999 88888876543
No 191
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=37.06 E-value=1.1e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=30.4
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCC-eEEEEeCCCCCCChH-HHHHHHH
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKN-VTFNTYSGLQHSSNP-ELKQVST 64 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~-v~~~~y~g~~H~~~~-~~~~v~~ 64 (86)
+++++.|..+| +.|.+.|++.|.. +..+.||+ -|.++. .++.+..
T Consensus 233 ~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~f~D-Hh~ft~~dl~~l~~ 279 (325)
T PRK00652 233 RVVAFAGIGNP-------QRFFATLRALGIEVVKTHAFPD-HYPFTKADLEALVS 279 (325)
T ss_pred eEEEEEeCCCH-------HHHHHHHHHcCCceeeeeeCCC-CCCCCHHHHHHHHh
Confidence 45555555554 4788999999985 67789984 566666 6655543
No 192
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=37.02 E-value=46 Score=25.29 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=44.1
Q ss_pred CCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC---CCeEEEEeCCCCCCChH-----HHHHHHHHHHh
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV---KNVTFNTYSGLQHSSNP-----ELKQVSTRLEN 68 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g---~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~ 68 (86)
.....+.+++..+|-.|..+|+-++....+.+.... -.+..++|+ +||-+.- ....+..|+..
T Consensus 420 ~a~~~~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 420 MALDPKLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred cccCCcceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 445677889999999999999988877776665432 246778888 7998842 34445555543
No 193
>KOG1717|consensus
Probab=36.91 E-value=48 Score=23.56 Aligned_cols=30 Identities=7% Similarity=0.094 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCCCChH---HHHHHHHHHHhhhc
Q psy11078 42 NVTFNTYSGLQHSSNP---ELKQVSTRLENRAL 71 (86)
Q Consensus 42 ~v~~~~y~g~~H~~~~---~~~~v~~wl~~~~~ 71 (86)
+..|+.+|-.+|+..+ -++++..||++...
T Consensus 217 ~f~YkqipisDh~Sqnls~ffpEAIsfIdeArs 249 (343)
T KOG1717|consen 217 EFIYKQIPISDHASQNLSQFFPEAISFIDEARS 249 (343)
T ss_pred ceeEEeeeccchhhhhhhhhhHHHHHHHHHhhc
Confidence 5778889988998887 58999999997654
No 194
>PRK09061 D-glutamate deacylase; Validated
Probab=36.36 E-value=1.1e+02 Score=22.87 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=32.9
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeC
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYS 49 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~ 49 (86)
+.|+.+.|-.....-+...+.++.+.+++.|.++.+..||
T Consensus 245 G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P 284 (509)
T PRK09061 245 GAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYP 284 (509)
T ss_pred CCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecC
Confidence 5788888887766666677778888889999999999987
No 195
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=35.85 E-value=54 Score=23.67 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
..-|++.+|..||.-+..... .....+.....||++|....
T Consensus 376 ~tnviFtNG~~DPW~~lgv~~-------~~~~~~~~~~I~g~~Hc~Dl 416 (434)
T PF05577_consen 376 ATNVIFTNGELDPWRALGVTS-------DSSDSVPAIVIPGGAHCSDL 416 (434)
T ss_dssp --SEEEEEETT-CCGGGS--S--------SSSSEEEEEETT--TTGGG
T ss_pred CCeEEeeCCCCCCcccccCCC-------CCCCCcccEEECCCeeeccc
Confidence 346999999999998876222 22335666778999997653
No 196
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=34.94 E-value=78 Score=20.90 Aligned_cols=36 Identities=14% Similarity=-0.166 Sum_probs=29.1
Q ss_pred CCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCC
Q psy11078 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 5 ~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g 40 (86)
++.-..-|++.++|..+...+.+....+.+.|.+-|
T Consensus 48 ~~~L~~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GG 83 (207)
T PF13709_consen 48 DDELFFYPFLYWPGHGDFPLSDEEIANLRRYLENGG 83 (207)
T ss_pred chhHHhCCEEEEeCCCCCCCCHHHHHHHHHHHHcCC
Confidence 445567899999999999777788888888887655
No 197
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=34.73 E-value=19 Score=21.79 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCCCccccccccc
Q psy11078 59 LKQVSTRLENRALSGNIMETGKVTS 83 (86)
Q Consensus 59 ~~~v~~wl~~~~~~~~~~~~~~~~~ 83 (86)
.....+|+.++++..++..+||-|.
T Consensus 36 ~~Ha~dfi~~RLapA~p~nDGkQTP 60 (111)
T PF13811_consen 36 REHARDFIAKRLAPAQPPNDGKQTP 60 (111)
T ss_pred HHHHHHHHHHHhCccCCCCCCCCCC
Confidence 4568899999999999999999874
No 198
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=34.37 E-value=84 Score=24.82 Aligned_cols=33 Identities=12% Similarity=-0.171 Sum_probs=24.1
Q ss_pred CCCCcEEEeecCCCC-------ccChHHHHHHHHHHhcCC
Q psy11078 8 NVNTRFLQAHGDCDP-------IVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 8 ~~~~Pili~hG~~D~-------vVp~~~~~~~~~~l~~~g 40 (86)
..+.|||.+|.-.|. .|+++.-++..++|+++|
T Consensus 46 ~~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nG 85 (672)
T PRK14581 46 KNTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNG 85 (672)
T ss_pred CCceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCc
Confidence 466899999998764 456666666677777764
No 199
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=33.93 E-value=82 Score=17.72 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=17.1
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
+++.||..++- .......+.+.+++.
T Consensus 3 vlv~hGS~~~~-~~~~~~~l~~~l~~~ 28 (101)
T cd03416 3 LLVGHGSRDPR-AAEALEALAERLRER 28 (101)
T ss_pred EEEEcCCCCHH-HHHHHHHHHHHHHhh
Confidence 67889998872 234455667777654
No 200
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=33.46 E-value=97 Score=23.28 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=32.0
Q ss_pred CCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----------HHHHHHHHHH
Q psy11078 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----------ELKQVSTRLE 67 (86)
Q Consensus 10 ~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----------~~~~v~~wl~ 67 (86)
..-+|+++|++||..--.. .. .+...+....+-||++|+... ....+..|..
T Consensus 351 ~~rmlFVYG~nDPW~A~~f-----~l-~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEPF-----RL-GKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CCeEEEEeCCCCCcccCcc-----cc-CCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 4559999999999864321 11 111125555666999998653 2445666765
No 201
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=33.46 E-value=28 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=12.1
Q ss_pred CCCCCCcEEEeecCCCCc
Q psy11078 6 NPNVNTRFLQAHGDCDPI 23 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~v 23 (86)
.+....||++.|-..|..
T Consensus 22 ~l~~gtPv~i~H~S~D~~ 39 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGA 39 (54)
T ss_dssp EE-TT-EEEEEEE-TTSS
T ss_pred ccCCCCCEEEEEECCCCC
Confidence 346788999999999863
No 202
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=33.39 E-value=1.8e+02 Score=20.66 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=31.1
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
.+|++.+ +.+.-.....+.+.|.+.|.++....|++..-..+. .+.++.+++.+
T Consensus 33 ~~livtd---~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 87 (358)
T PRK00002 33 KVAIVTD---ETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLE 87 (358)
T ss_pred eEEEEEC---CchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 4555553 333334556677778888877776667654333333 56666666654
No 203
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=32.70 E-value=73 Score=25.13 Aligned_cols=33 Identities=12% Similarity=-0.170 Sum_probs=24.3
Q ss_pred CCCCcEEEeecCCCC-------ccChHHHHHHHHHHhcCC
Q psy11078 8 NVNTRFLQAHGDCDP-------IVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 8 ~~~~Pili~hG~~D~-------vVp~~~~~~~~~~l~~~g 40 (86)
..+.|||.+|.-.|+ .|+++.-++..++|+++|
T Consensus 46 ~~~~~VL~YH~V~d~~~~~~~~~Vspe~Fe~qL~~Lk~nG 85 (671)
T PRK14582 46 HNGFVAIAYHDVEDEAADQRFMSVRTSALREQFAWLRENG 85 (671)
T ss_pred CCceEEEEeCcccCCcccccccccCHHHHHHHHHHHHHCc
Confidence 467999999998764 456666666777777764
No 204
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=32.56 E-value=97 Score=17.47 Aligned_cols=26 Identities=19% Similarity=-0.083 Sum_probs=18.4
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEEeC
Q psy11078 24 VPYMWGQLTSSLLKGFVKNVTFNTYS 49 (86)
Q Consensus 24 Vp~~~~~~~~~~l~~~g~~v~~~~y~ 49 (86)
||.+.+++..+.+.++|++.-+-..|
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 58888888888888888876665544
No 205
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=32.27 E-value=1.3e+02 Score=20.58 Aligned_cols=11 Identities=9% Similarity=-0.327 Sum_probs=4.3
Q ss_pred HHHHHHhcCCC
Q psy11078 31 LTSSLLKGFVK 41 (86)
Q Consensus 31 ~~~~~l~~~g~ 41 (86)
.+.+.|.+.|+
T Consensus 101 ~M~~yLi~~GV 111 (239)
T PRK10834 101 TMRKDLIAAGV 111 (239)
T ss_pred HHHHHHHHcCC
Confidence 33333333333
No 206
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.08 E-value=1.1e+02 Score=17.84 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=22.3
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCC-CCeEEEEeC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFV-KNVTFNTYS 49 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g-~~v~~~~y~ 49 (86)
+|+.||..|+- ...-+.+.+.+++.+ .++..=..+
T Consensus 4 llvgHGSr~~~--~~~~~~l~~~l~~~~~~~v~~~~lE 39 (103)
T cd03413 4 VFMGHGTDHPS--NAVYAALEYVLREEDPANVFVGTVE 39 (103)
T ss_pred EEEECCCCchh--hhHHHHHHHHHHhcCCCcEEEEEEc
Confidence 67889999985 355567777776654 345433333
No 207
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=31.95 E-value=93 Score=20.81 Aligned_cols=35 Identities=9% Similarity=-0.036 Sum_probs=21.9
Q ss_pred CCCccCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCC
Q psy11078 20 CDPIVPY-MWGQLTSSLLKGFVKNVTFNTYSGLQHS 54 (86)
Q Consensus 20 ~D~vVp~-~~~~~~~~~l~~~g~~v~~~~y~g~~H~ 54 (86)
.|+-+|| .....-...+.+.++.+.+..||-.|+.
T Consensus 115 tDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~ 150 (232)
T PRK10877 115 TDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLD 150 (232)
T ss_pred ECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCC
Confidence 4777887 4444444444455677888889965543
No 208
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=31.16 E-value=1e+02 Score=18.70 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=16.4
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhc
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKG 38 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~ 38 (86)
+++.||..|+- ..+..+.+++.++.
T Consensus 4 llvgHGSR~~~-~~~~~~~la~~l~~ 28 (125)
T cd03415 4 IIITHGSRRNT-FNEDMEEWAAYLER 28 (125)
T ss_pred EEEecCCCChH-HHHHHHHHHHHHHh
Confidence 67889998885 33445566666653
No 209
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=30.80 E-value=1.8e+02 Score=20.10 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCCcEE-EeecCCCCccChHHHHHHHHHHhcCCC-CeEEEEeCCCCCCChH---HHHHHHHHHHhhhcC
Q psy11078 8 NVNTRFL-QAHGDCDPIVPYMWGQLTSSLLKGFVK-NVTFNTYSGLQHSSNP---ELKQVSTRLENRALS 72 (86)
Q Consensus 8 ~~~~Pil-i~hG~~D~vVp~~~~~~~~~~l~~~g~-~v~~~~y~g~~H~~~~---~~~~v~~wl~~~~~~ 72 (86)
...-|++ +.||-. +...+-..+.+.+...|. -|....|.-.+..... .+.++.+|+.+.+..
T Consensus 14 ~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~ 80 (259)
T PF12740_consen 14 AGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLES 80 (259)
T ss_pred CCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchh
Confidence 4456754 556665 444445577888888886 4455545433433332 578899999875543
No 210
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=30.70 E-value=1.7e+02 Score=20.99 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCCCCcEEEeecCCCCccChHHHHHHHHHHhcC----CCCeEE
Q psy11078 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF----VKNVTF 45 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~----g~~v~~ 45 (86)
.+...+|.|++++..=..+|....+-+...+++. |.++++
T Consensus 383 q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~ 426 (429)
T TIGR03594 383 QVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRL 426 (429)
T ss_pred CCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 3456789999999888889988888888888763 445554
No 211
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=30.67 E-value=1.7e+02 Score=19.72 Aligned_cols=31 Identities=16% Similarity=-0.124 Sum_probs=20.0
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCe
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNV 43 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v 43 (86)
|.++.|..+.....+...-+.+++.+.|.++
T Consensus 122 I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~ 152 (279)
T PF00532_consen 122 IAFIGGPEDSSTSRERLQGYRDALKEAGLPI 152 (279)
T ss_dssp EEEEEESTTTHHHHHHHHHHHHHHHHTTSCE
T ss_pred EEEEecCcchHHHHHHHHHHHHHHHHcCCCC
Confidence 6666776666644555555677777777644
No 212
>PRK00093 GTP-binding protein Der; Reviewed
Probab=30.63 E-value=1.6e+02 Score=21.14 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcC----CCCeEEEE
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF----VKNVTFNT 47 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~----g~~v~~~~ 47 (86)
+...+|.|++++..-..+|....+-+...+++. |+++++..
T Consensus 384 ~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~ 428 (435)
T PRK00093 384 VGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEF 428 (435)
T ss_pred CCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 456789999999999999998888888888763 55666544
No 213
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=30.58 E-value=17 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=8.2
Q ss_pred CCCCCCCCcEEEeecCCC
Q psy11078 4 TGNPNVNTRFLQAHGDCD 21 (86)
Q Consensus 4 ~~~~~~~~Pili~hG~~D 21 (86)
+++.....|+|++||==.
T Consensus 86 rs~~~~aiPLll~HGWPg 103 (112)
T PF06441_consen 86 RSKRPNAIPLLLLHGWPG 103 (112)
T ss_dssp --S-TT-EEEEEE--SS-
T ss_pred eCCCCCCeEEEEECCCCc
Confidence 345566789999998433
No 214
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.80 E-value=19 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=22.2
Q ss_pred CCCeEEEEeCCCCCCChH-----------------HHHHHHHHHHhhh
Q psy11078 40 VKNVTFNTYSGLQHSSNP-----------------ELKQVSTRLENRA 70 (86)
Q Consensus 40 g~~v~~~~y~g~~H~~~~-----------------~~~~v~~wl~~~~ 70 (86)
+.++++..++|+||.... .-+.+.+|+..+.
T Consensus 261 ~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 261 NARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred CcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 346889999999998772 1356777777543
No 215
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=29.44 E-value=54 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.3
Q ss_pred eecCCCCccChHHHHHHHHHHhcCC
Q psy11078 16 AHGDCDPIVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 16 ~hG~~D~vVp~~~~~~~~~~l~~~g 40 (86)
+||..|.|||++.+....+.+-+..
T Consensus 149 ~yGs~h~Vvp~~~~~~wl~~ll~~d 173 (249)
T PF12531_consen 149 FYGSAHNVVPPEVAEQWLDALLALD 173 (249)
T ss_pred ccCCcccccCHHHHHHHHHHHHhcC
Confidence 6999999999999998888886543
No 216
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=29.35 E-value=94 Score=18.79 Aligned_cols=57 Identities=5% Similarity=-0.160 Sum_probs=23.3
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChHHHHHHHHHHHh
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLEN 68 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~~ 68 (86)
|.+++.|....--....++.+.+.+.+.|++.+-.+.+...-....++.....|+.+
T Consensus 39 ~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~ 95 (155)
T PF02698_consen 39 PRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKE 95 (155)
T ss_dssp --EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHh
Confidence 445555655444456666677777777777533333322211111144455555553
No 217
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=28.79 E-value=1e+02 Score=17.76 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=16.4
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGF 39 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~ 39 (86)
+++.||..|+-- -.....+.+.+++.
T Consensus 4 llv~HGS~~~~~-~~~~~~l~~~l~~~ 29 (117)
T cd03414 4 VLVGRGSSDPDA-NADVAKIARLLEEG 29 (117)
T ss_pred EEEcCCCCCHHH-HHHHHHHHHHHHHh
Confidence 677888887643 24555666666543
No 218
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=28.45 E-value=1.9e+02 Score=19.87 Aligned_cols=25 Identities=0% Similarity=-0.128 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEEeC
Q psy11078 25 PYMWGQLTSSLLKGFVKNVTFNTYS 49 (86)
Q Consensus 25 p~~~~~~~~~~l~~~g~~v~~~~y~ 49 (86)
+++...++++.+++.|+..++-+|+
T Consensus 124 ~~~~~~~~~~~~~e~Gi~pe~ev~d 148 (272)
T PF05853_consen 124 TPADARELARRMRERGIKPEIEVFD 148 (272)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 3577888999999999999999997
No 219
>KOG2182|consensus
Probab=28.42 E-value=2.5e+02 Score=21.58 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=40.7
Q ss_pred CCCCcEEEeecCCCCccC--hHH-HHHHHHHHhcCCC---CeEEEEeCCCCCCChH-------------HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVP--YMW-GQLTSSLLKGFVK---NVTFNTYSGLQHSSNP-------------ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp--~~~-~~~~~~~l~~~g~---~v~~~~y~g~~H~~~~-------------~~~~v~~wl~~ 68 (86)
..+-|+|+|-|.+-+.-+ ... ......+.++.|+ .+|.+.| |..|-+.. ++.|+..||..
T Consensus 83 ~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFY-G~S~P~~~~st~nlk~LSs~QALaDla~fI~~ 161 (514)
T KOG2182|consen 83 KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFY-GQSSPIGDLSTSNLKYLSSLQALADLAEFIKA 161 (514)
T ss_pred cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeecc-ccCCCCCCCcccchhhhhHHHHHHHHHHHHHH
Confidence 567899999988777652 111 2234556667776 4555556 55554431 47888888875
Q ss_pred hhcCCCcc
Q psy11078 69 RALSGNIM 76 (86)
Q Consensus 69 ~~~~~~~~ 76 (86)
.-..-|..
T Consensus 162 ~n~k~n~~ 169 (514)
T KOG2182|consen 162 MNAKFNFS 169 (514)
T ss_pred HHhhcCCC
Confidence 43333333
No 220
>PLN02757 sirohydrochlorine ferrochelatase
Probab=27.99 E-value=62 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=19.1
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhc
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKG 38 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~ 38 (86)
+++.||..|+- .....+++++.+++
T Consensus 17 llvgHGSrd~~-a~~~~~~la~~l~~ 41 (154)
T PLN02757 17 VIVDHGSRRKE-SNLMLEEFVAMYKQ 41 (154)
T ss_pred EEEeCCCCCHH-HHHHHHHHHHHHHh
Confidence 78999999996 44556677777764
No 221
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=27.43 E-value=2e+02 Score=21.76 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=36.2
Q ss_pred CCCCcEEEeecCCCCccChHH--------------HHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYMW--------------GQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~~--------------~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
..+.|+|+.|=..-.-+|+.. -.++...+.+.|++.++.. ||.-.+ ..+++..|+.-
T Consensus 89 ~l~~PvL~~~~q~~~~l~~~sidmd~m~l~qaahG~~e~~~il~R~gi~~~~v~----G~~~d~~~~~~i~~w~ra 160 (484)
T cd03557 89 ALQKPLLHLHTQFNREIPWDTIDMDFMNLNQSAHGDREFGFIGSRMRIPRKVVV----GHWQDPEVHEKIGDWMRA 160 (484)
T ss_pred HcCCCEEEEccCCCccCCCCCccchHHhhhhhcCCcHHHHHHHHHcCCCeeEEE----EeCCCHHHHHHHHHHHHH
Confidence 357899998877544444432 1223336667777765555 777666 66888888873
No 222
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=27.43 E-value=2.1e+02 Score=21.03 Aligned_cols=57 Identities=7% Similarity=-0.133 Sum_probs=39.0
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCC-----CeEEEEeCCCCCCChH--HHHHHHHHHH
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK-----NVTFNTYSGLQHSSNP--ELKQVSTRLE 67 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~-----~v~~~~y~g~~H~~~~--~~~~v~~wl~ 67 (86)
.+..+|+..|+++-. .+...++.+.+...+. .......+++.|.-.. -..++..|..
T Consensus 301 ~~~~vfVi~Ge~Evf--rddI~~~~~~~~~~~~~~~~~~~nv~~~~~G~Hi~P~~~~~~~~~~W~~ 364 (374)
T PF10340_consen 301 KKYSVFVIYGEDEVF--RDDILEWAKKLNDVKPNKFSNSNNVYIDEGGIHIGPILNYSRDLDKWSK 364 (374)
T ss_pred cCCcEEEEECCcccc--HHHHHHHHHHHhhcCccccCCcceEEEecCCccccchhhhhcCHHHHhc
Confidence 345689999987654 4566677777775442 4677788889997554 4566777765
No 223
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=27.34 E-value=1.4e+02 Score=17.46 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=16.2
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEE
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFN 46 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~ 46 (86)
+++..|.. ...+++ ++.+.+++.|+.++.-
T Consensus 57 liiGtG~~-~~~~~~---~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 57 LIIGTGKR-QLFLPP---ELREYLRKKGIGVEVM 86 (110)
T ss_dssp EEEEETTS--SECTH---HHHHHHHTTT-EEEEE
T ss_pred EEEccCCc-cccCCH---HHHHHHHHcCCeEEEE
Confidence 44555555 444444 3566677888776654
No 224
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=27.27 E-value=55 Score=18.24 Aligned_cols=51 Identities=4% Similarity=0.010 Sum_probs=27.3
Q ss_pred CCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH----H-HHHHHHHHHhhhc
Q psy11078 20 CDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP----E-LKQVSTRLENRAL 71 (86)
Q Consensus 20 ~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~----~-~~~v~~wl~~~~~ 71 (86)
.|.+++...+......+.+....+. ..-++.+-.+-. + .+-+.+||+++++
T Consensus 1 e~~Lis~~~~~~~~~~f~~L~~~~~-~~~~~~~~TlE~lvremLRPmLkeWLD~nLP 56 (73)
T PF10691_consen 1 EESLISPETAEAVASAFAKLASAIR-QISPSSGRTLEDLVREMLRPMLKEWLDENLP 56 (73)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHH-hccccccccHHHHHHHHHHHHHHHHHHhccH
Confidence 3677787777666666655432222 011111111111 1 3568899999887
No 225
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=27.19 E-value=2.4e+02 Score=20.17 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=34.9
Q ss_pred cEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 12 Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
.++++. |+.+.......+.+.|.+.|.++...++++....-+. ....+.+++.+
T Consensus 28 ~~lvVt---d~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~ 82 (354)
T cd08199 28 RRFVVV---DQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDA 82 (354)
T ss_pred eEEEEE---CccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 345544 5555544567788888888888877777765444344 66666666664
No 226
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=26.36 E-value=1.5e+02 Score=20.99 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=31.3
Q ss_pred CCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEE
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNT 47 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~ 47 (86)
.+.|.++.-|++-.+=--..+..+.+.+++.|.+..|.-
T Consensus 110 ~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fva 148 (301)
T PF07755_consen 110 VKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVA 148 (301)
T ss_dssp -SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEe
Confidence 477888999998888778889999999999999988864
No 227
>KOG2310|consensus
Probab=25.81 E-value=44 Score=25.95 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.6
Q ss_pred CCCCCCcEEEeecCCCCcc
Q psy11078 6 NPNVNTRFLQAHGDCDPIV 24 (86)
Q Consensus 6 ~~~~~~Pili~hG~~D~vV 24 (86)
..++..|||-+||..|+--
T Consensus 116 NlNIsIPVFsIHGNHDDpS 134 (646)
T KOG2310|consen 116 NLNISIPVFSIHGNHDDPS 134 (646)
T ss_pred CcceeeeeEEeecCCCCCc
Confidence 4577899999999998743
No 228
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.79 E-value=1.3e+02 Score=18.14 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=18.4
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFV 40 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g 40 (86)
+++.||..|+ -.-..-..+.+.+++..
T Consensus 4 llv~fGS~~~-~~~~~~~~i~~~l~~~~ 30 (127)
T cd03412 4 LLVSFGTSYP-TAEKTIDAIEDKVRAAF 30 (127)
T ss_pred EEEeCCCCCH-HHHHHHHHHHHHHHHHC
Confidence 6788999998 44445556677776543
No 229
>PRK02929 L-arabinose isomerase; Provisional
Probab=25.65 E-value=3e+02 Score=20.97 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=36.1
Q ss_pred CCCCcEEEeecCCCCccChH--------------HHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHh
Q psy11078 8 NVNTRFLQAHGDCDPIVPYM--------------WGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLEN 68 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~~--------------~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~ 68 (86)
..+.|+|+.|=.-.+-+|++ ....+...+.+.|++.++.. ||.-.+ ..+++..|+.-
T Consensus 95 ~l~~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~~G~~e~~~il~R~gi~~~~v~----G~~~d~~v~~~i~~w~ra 166 (499)
T PRK02929 95 ALQKPLLHLHTQFNAEIPWDTIDMDFMNLNQSAHGDREFGFIGARLRKQRKVVV----GHWQDPEVQERIGAWMRV 166 (499)
T ss_pred HcCCCEEEEecCCCccCCCCCCCcchhhhhhcccChHHHHHHHHHcCCCeeEEE----EeCCCHHHHHHHHHHHHH
Confidence 35789999887433333332 12345566677777765544 777666 67788888873
No 230
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=25.60 E-value=1.8e+02 Score=20.71 Aligned_cols=30 Identities=17% Similarity=-0.139 Sum_probs=26.8
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCC
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKN 42 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~ 42 (86)
-|++.|.-||....+.-..+++.+++.|+.
T Consensus 56 ~L~i~G~GDP~L~~~~L~~la~~l~~~Gi~ 85 (345)
T TIGR00666 56 NLVLRFGGDPTLKRQDIRNLVATLKKSGVK 85 (345)
T ss_pred cEEEEeecCCCcCHHHHHHHHHHHHHcCCc
Confidence 578899999999999999999999999873
No 231
>COG1739 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=1.2e+02 Score=20.04 Aligned_cols=52 Identities=23% Similarity=0.118 Sum_probs=39.5
Q ss_pred CccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----HHHHHHHHHHhhhcCC
Q psy11078 22 PIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----ELKQVSTRLENRALSG 73 (86)
Q Consensus 22 ~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----~~~~v~~wl~~~~~~~ 73 (86)
-.++|+....+...+.+.+..+.-.-|.+.+|.+.- ....+.+|+.....++
T Consensus 140 ~~~~y~~l~~l~~~l~~~~~~i~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~g~ 196 (203)
T COG1739 140 VGCAYRILGLLERLLKQNDDDVEEARYSGGSVLLTVRFRHIVIEAVSRLLKGNHIGP 196 (203)
T ss_pred eccchhhhHHHHHHHHhccceEEEeeecCCeEEEEEEechhhHHHHHHHHhhccCCc
Confidence 346777777888888888778888888877787653 5788899998766544
No 232
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=25.34 E-value=71 Score=24.02 Aligned_cols=27 Identities=7% Similarity=-0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 27 MWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 27 ~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
.+.+.+.+.|.+.|+++. .|.+||.+.
T Consensus 323 ~~~~~l~~~L~~~Gvpv~---~p~ggH~v~ 349 (460)
T PRK13237 323 GQVRYLGEKLLAAGVPIV---EPVGGHAVF 349 (460)
T ss_pred HHHHHHHHHHHHCCCcee---cCCCceEEE
Confidence 567788999999999875 488899875
No 233
>PLN02924 thymidylate kinase
Probab=24.70 E-value=2.2e+02 Score=18.88 Aligned_cols=50 Identities=14% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCCCCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCC
Q psy11078 4 TGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53 (86)
Q Consensus 4 ~~~~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H 53 (86)
|.+.....+.||.-=.-|..---.++..+.+.|...|.++.+..+|+.+.
T Consensus 8 ~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~ 57 (220)
T PLN02924 8 TESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTT 57 (220)
T ss_pred CCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCC
Confidence 45555666778888888998889999999999999998887777886433
No 234
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=24.45 E-value=59 Score=18.58 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=18.8
Q ss_pred EEEEeCCCCCCChH-HHHHHHHHHHhhhc
Q psy11078 44 TFNTYSGLQHSSNP-ELKQVSTRLENRAL 71 (86)
Q Consensus 44 ~~~~y~g~~H~~~~-~~~~v~~wl~~~~~ 71 (86)
.+..||.....-.. ....+..||.+++.
T Consensus 60 g~v~yp~~~g~~~~f~a~~~~~fl~~~f~ 88 (91)
T PF05595_consen 60 GFVYYPKGKGSKWLFNAKKMKEFLEEHFE 88 (91)
T ss_pred CeEEccCCCCceEEEehHHHHHHHHHhHH
Confidence 57888874443333 56778889988765
No 235
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=24.41 E-value=1.5e+02 Score=16.82 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHH-hcCCCCeEEEEeCCCCCCChHHHHHHHHHHHhh
Q psy11078 32 TSSLL-KGFVKNVTFNTYSGLQHSSNPELKQVSTRLENR 69 (86)
Q Consensus 32 ~~~~l-~~~g~~v~~~~y~g~~H~~~~~~~~v~~wl~~~ 69 (86)
+.+++ .+.|.+++|++....+ + ..+++.+||.++
T Consensus 23 L~~~i~~~FG~~arFhTCSa~~--m--~a~~Li~FL~~k 57 (77)
T TIGR03853 23 LKAAIEQKFGEDARFHTCSAEG--M--TADELLQFLLKK 57 (77)
T ss_pred HHHHHHHHhCCCceEeeccccc--C--CHHHHHHHHHHC
Confidence 44444 5678899999986322 1 456778888753
No 236
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=24.40 E-value=2.9e+02 Score=20.17 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=44.3
Q ss_pred CCCCCCc-EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh----------H-HHHHHHHHHHhhhcCC
Q psy11078 6 NPNVNTR-FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN----------P-ELKQVSTRLENRALSG 73 (86)
Q Consensus 6 ~~~~~~P-ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~----------~-~~~~v~~wl~~~~~~~ 73 (86)
......| +++.||-.-..-++ .++.+.+++.+.|..+-..-+-|.+=... - .+..+.+|+.+.....
T Consensus 70 p~~~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 70 PRAAKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPR 148 (345)
T ss_pred ccccCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCC
Confidence 3445556 77889988877666 88899999999998766655554332221 1 4566677776655443
No 237
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=24.35 E-value=1.1e+02 Score=21.21 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=26.6
Q ss_pred EEeCCCCCCChH-HH--HHHHHHHHhhhcCC-------------Ccccccccc
Q psy11078 46 NTYSGLQHSSNP-EL--KQVSTRLENRALSG-------------NIMETGKVT 82 (86)
Q Consensus 46 ~~y~g~~H~~~~-~~--~~v~~wl~~~~~~~-------------~~~~~~~~~ 82 (86)
..-||..|.+.. -+ =++.+|--++-.++ ++.+||||-
T Consensus 100 ~~~pg~~~~ld~~Yf~RIeAiefav~~DDG~~~~~l~~ADivLvGVSRtsKTP 152 (255)
T PF03618_consen 100 SRKPGLQHQLDEDYFKRIEAIEFAVKHDDGKNPRGLDEADIVLVGVSRTSKTP 152 (255)
T ss_pred ccccCccccchHHHHHHHHHHHHHHHccCCCCccccccCCEEEEcccccCCCc
Confidence 456788888887 33 35677887776665 688899984
No 238
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=24.02 E-value=45 Score=19.19 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhcCCCccccc
Q psy11078 58 ELKQVSTRLENRALSGNIMETG 79 (86)
Q Consensus 58 ~~~~v~~wl~~~~~~~~~~~~~ 79 (86)
.-+++.+||.+.++..++.+..
T Consensus 31 sG~~Iv~~L~~n~~~~s~~~aE 52 (84)
T cd04436 31 SGSEIVSWLQENMPEKDLDAAE 52 (84)
T ss_pred cHHHHHHHHHHcCCCCCHHHHH
Confidence 4567899999988877665544
No 239
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.85 E-value=1.9e+02 Score=19.28 Aligned_cols=33 Identities=12% Similarity=-0.050 Sum_probs=19.0
Q ss_pred CcEEEee-cCCCCccChHHHHHHHHHHhcCCCCe
Q psy11078 11 TRFLQAH-GDCDPIVPYMWGQLTSSLLKGFVKNV 43 (86)
Q Consensus 11 ~Pili~h-G~~D~vVp~~~~~~~~~~l~~~g~~v 43 (86)
.-|+.+| |....-.|.+..++++..+..+|+++
T Consensus 186 ~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDi 219 (250)
T PF09587_consen 186 VVIVSLHWGIEYENYPTPEQRELARALIDAGADI 219 (250)
T ss_pred EEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCE
Confidence 3344444 33555556666667777776666654
No 240
>COG3233 Predicted deacetylase [General function prediction only]
Probab=23.48 E-value=2.5e+02 Score=19.25 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=36.8
Q ss_pred cEEEeecCCCCccCh-HHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHHhhhcCC
Q psy11078 12 RFLQAHGDCDPIVPY-MWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLENRALSG 73 (86)
Q Consensus 12 Pili~hG~~D~vVp~-~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~~~~~~~ 73 (86)
+++++|.-.=---|. +...++.+.++..+..+ +...|+..|.-.. .-+...+||.+....+
T Consensus 5 ~iillhdVSpv~~~~~~~i~~~ide~~~~~~t~-lLViPn~~~~~~l~~d~rf~~~l~~r~e~G 67 (233)
T COG3233 5 LIILLHDVSPVYWPTLSNIDAAIDEYGAQNSTV-LLVIPNHANDYPLSKDPRFVDLLTEREEEG 67 (233)
T ss_pred ceEEEEecCcccchhHHHHHHHHHHhCCCCceE-EEEeeccCCCCCcccChHHHHHHHHHHhcC
Confidence 677777544333332 33444555555554445 5778876666555 6677888998776554
No 241
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.43 E-value=1.8e+02 Score=17.60 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 27 MWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 27 ~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+..++..++|.++|++++++-|- .+.++.
T Consensus 12 st~RKA~~~L~~~gi~~~~~d~~--~~p~t~ 40 (126)
T TIGR01616 12 ANNARQKAALKASGHDVEVQDIL--KEPWHA 40 (126)
T ss_pred HHHHHHHHHHHHCCCCcEEEecc--CCCcCH
Confidence 56778899999999999999885 455544
No 242
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.19 E-value=1.6e+02 Score=16.93 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-HHHHHHHHHH
Q psy11078 27 MWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-ELKQVSTRLE 67 (86)
Q Consensus 27 ~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-~~~~v~~wl~ 67 (86)
...++..++|+++|++++++-|- .+.++. ++.++.+-+.
T Consensus 7 ~t~rka~~~L~~~gi~~~~~d~~--k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 7 STCRKALKWLEENGIEYEFIDYK--KEPLSREELRELLSKLG 46 (110)
T ss_dssp HHHHHHHHHHHHTT--EEEEETT--TS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeEeehhh--hCCCCHHHHHHHHHHhc
Confidence 45678889999999999999885 455555 5555444443
No 243
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=23.14 E-value=58 Score=23.22 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=16.4
Q ss_pred CCCcEEEeecCCCCccChHHH
Q psy11078 9 VNTRFLQAHGDCDPIVPYMWG 29 (86)
Q Consensus 9 ~~~Pili~hG~~D~vVp~~~~ 29 (86)
.+.|+++++|..|..--....
T Consensus 74 ~~Ipv~~I~GNHD~~~~~~~~ 94 (390)
T COG0420 74 AGIPVVVIAGNHDSPSRLSEA 94 (390)
T ss_pred CCCcEEEecCCCCchhccccc
Confidence 578999999999987644433
No 244
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.13 E-value=1.7e+02 Score=19.59 Aligned_cols=43 Identities=14% Similarity=-0.042 Sum_probs=32.0
Q ss_pred CCCCcEEEeecCCCCccCh------------HHHHHHHHHHhcCCCCeEEEEeCC
Q psy11078 8 NVNTRFLQAHGDCDPIVPY------------MWGQLTSSLLKGFVKNVTFNTYSG 50 (86)
Q Consensus 8 ~~~~Pili~hG~~D~vVp~------------~~~~~~~~~l~~~g~~v~~~~y~g 50 (86)
..++++|++|--.+-.+.+ .+..++..+.+++|++|-+.--||
T Consensus 27 ~p~RavLLIhDMQ~YFv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~ 81 (218)
T COG1535 27 EPKRAVLLIHDMQNYFVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPG 81 (218)
T ss_pred CcccceeeeehhHHhhcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4567899999776655543 345667777788999999988886
No 245
>KOG2541|consensus
Probab=23.07 E-value=2.9e+02 Score=19.69 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=30.4
Q ss_pred CcEEEeecCCCCccChHHHHHHHHHHhcC-CCCe-EEEEeCCCCCCChH
Q psy11078 11 TRFLQAHGDCDPIVPYMWGQLTSSLLKGF-VKNV-TFNTYSGLQHSSNP 57 (86)
Q Consensus 11 ~Pili~hG~~D~vVp~~~~~~~~~~l~~~-g~~v-~~~~y~g~~H~~~~ 57 (86)
.|+.++||-.|...+. ....+.+.+.+. |..+ .+.+..|..+++..
T Consensus 24 ~P~ii~HGigd~c~~~-~~~~~~q~l~~~~g~~v~~leig~g~~~s~l~ 71 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSL-SMANLTQLLEELPGSPVYCLEIGDGIKDSSLM 71 (296)
T ss_pred CCEEEEeccCcccccc-hHHHHHHHHHhCCCCeeEEEEecCCcchhhhc
Confidence 8999999999999883 233455555553 3343 45566665576654
No 246
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.02 E-value=1.2e+02 Score=21.04 Aligned_cols=33 Identities=9% Similarity=-0.208 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH
Q psy11078 25 PYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57 (86)
Q Consensus 25 p~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~ 57 (86)
+++.++.+.+.+.+.|.++....-.+.+|++..
T Consensus 97 ~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~v 129 (278)
T PRK13364 97 DTELSWHIIESLVEEEFDITTCQEMLVDHAFTL 129 (278)
T ss_pred CHHHHHHHHHHHHHcCCCeecccCCCCCcchhh
Confidence 567788888889999998877666678998764
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=22.99 E-value=20 Score=25.06 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=37.9
Q ss_pred EEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCChH-----------HHHHHHHHHHhhhc
Q psy11078 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP-----------ELKQVSTRLENRAL 71 (86)
Q Consensus 14 li~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~~-----------~~~~v~~wl~~~~~ 71 (86)
|.+.+..|... .+....+++.|++.|+++....||. +++.. .+.++.++|.+.-.
T Consensus 187 LaL~~~~~~~~-v~r~~~l~~~l~~~~~kik~~~yp~--lGlLall~~~~~~~~~~i~ev~~~L~~~k~ 252 (297)
T PF13170_consen 187 LALSEGDDQEK-VARVIELYNALKKNGVKIKYMHYPT--LGLLALLEDPEEKIVEEIKEVIDELKEQKG 252 (297)
T ss_pred HHhccccchHH-HHHHHHHHHHHHHcCCccccccccH--HHHHHhcCCchHHHHHHHHHHHHHHhhCcc
Confidence 34445555555 8889999999999999998888983 33321 35667777765443
No 248
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.36 E-value=1.8e+02 Score=17.15 Aligned_cols=6 Identities=0% Similarity=-0.269 Sum_probs=2.3
Q ss_pred EEEeCC
Q psy11078 45 FNTYSG 50 (86)
Q Consensus 45 ~~~y~g 50 (86)
..+..+
T Consensus 88 v~I~aD 93 (122)
T TIGR02803 88 IFFRAD 93 (122)
T ss_pred EEEEcC
Confidence 334333
No 249
>PRK03003 GTP-binding protein Der; Reviewed
Probab=21.98 E-value=2.7e+02 Score=20.54 Aligned_cols=39 Identities=3% Similarity=-0.005 Sum_probs=27.2
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcC----CCCeEEEE
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGF----VKNVTFNT 47 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~----g~~v~~~~ 47 (86)
+...+|.|+++.. ..+|...-+-+...|++. |+++++..
T Consensus 422 ~~~~pp~f~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~ 464 (472)
T PRK03003 422 ASTRPPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISV 464 (472)
T ss_pred CCCCCCEEEEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEE
Confidence 5678899999943 567888777777777653 55666543
No 250
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.
Probab=21.86 E-value=1.5e+02 Score=16.05 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=17.3
Q ss_pred cChHHHHHHHHHHhcCCCCeEE
Q psy11078 24 VPYMWGQLTSSLLKGFVKNVTF 45 (86)
Q Consensus 24 Vp~~~~~~~~~~l~~~g~~v~~ 45 (86)
++.+.++.+...|...|..+++
T Consensus 46 v~keeAe~ik~~Le~aGa~v~l 67 (68)
T PF00542_consen 46 VSKEEAEEIKKKLEAAGAKVEL 67 (68)
T ss_dssp E-HHHHHHHHHHHHCCT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEe
Confidence 6788899999999999987765
No 251
>KOG1551|consensus
Probab=21.58 E-value=1.5e+02 Score=21.35 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=25.2
Q ss_pred EEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Q psy11078 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56 (86)
Q Consensus 13 ili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~~ 56 (86)
+.++...+|..||-.....+.+.+. .++.+..+ .||-..
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WP----g~eVr~~e-gGHVsa 347 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWP----GCEVRYLE-GGHVSA 347 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCC----CCEEEEee-cCceee
Confidence 6778999999999855444444444 34445555 588654
No 252
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=21.29 E-value=1.8e+02 Score=16.84 Aligned_cols=39 Identities=13% Similarity=-0.077 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCCC-eEEEEeCCCCCCChH-HHHHHHHHH
Q psy11078 26 YMWGQLTSSLLKGFVKN-VTFNTYSGLQHSSNP-ELKQVSTRL 66 (86)
Q Consensus 26 ~~~~~~~~~~l~~~g~~-v~~~~y~g~~H~~~~-~~~~v~~wl 66 (86)
++...+..+.+.+.|.+ +...++ ...+... ++.++.+|+
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~--~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIV--GLPGENDEEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEE--EBTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE--EeCCCCHHHHHHHhCcC
Confidence 45556677777888776 444444 2444444 677777775
No 253
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.23 E-value=91 Score=21.80 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=25.6
Q ss_pred CCCCCcEEEeecCCCCccChHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Q psy11078 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSS 55 (86)
Q Consensus 7 ~~~~~Pili~hG~~D~vVp~~~~~~~~~~l~~~g~~v~~~~y~g~~H~~ 55 (86)
+-.++||+..-+..||....+ .+.+.|++.|.. -..-||..|..-
T Consensus 78 ~v~~tPViaGv~atDP~~~~~---~fl~~lk~~Gf~-GV~NfPTvgliD 122 (268)
T PF09370_consen 78 VVKDTPVIAGVCATDPFRDMD---RFLDELKELGFS-GVQNFPTVGLID 122 (268)
T ss_dssp G-SSS-EEEEE-TT-TT--HH---HHHHHHHHHT-S-EEEE-S-GGG--
T ss_pred hccCCCEEEEecCcCCCCcHH---HHHHHHHHhCCc-eEEECCcceeec
Confidence 346799999999999886554 788899988863 234568666543
No 254
>PHA02820 phospholipase-D-like protein; Provisional
Probab=20.61 E-value=2.4e+02 Score=20.79 Aligned_cols=28 Identities=11% Similarity=-0.209 Sum_probs=14.6
Q ss_pred cCCCCccChHHHHHHHHHHhcCCCCeEE
Q psy11078 18 GDCDPIVPYMWGQLTSSLLKGFVKNVTF 45 (86)
Q Consensus 18 G~~D~vVp~~~~~~~~~~l~~~g~~v~~ 45 (86)
+..|.-..........+.|.+.|+++..
T Consensus 279 ~~~d~~~~~~a~~~~l~~L~~~gv~I~V 306 (424)
T PHA02820 279 CWQRSSFIMRNFLRSIAMLKSKNINIEV 306 (424)
T ss_pred ccCCCCccHHHHHHHHHHHhccCceEEE
Confidence 3455543334445555666666666543
No 255
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=20.48 E-value=1.4e+02 Score=20.19 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.1
Q ss_pred cEEEeecCCCC
Q psy11078 12 RFLQAHGDCDP 22 (86)
Q Consensus 12 Pili~hG~~D~ 22 (86)
|++.+.|..|.
T Consensus 114 pv~~V~GNHD~ 124 (271)
T PRK11340 114 PTFACFGNHDR 124 (271)
T ss_pred CEEEecCCCCc
Confidence 44444444443
No 256
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=20.37 E-value=80 Score=16.53 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhcCCCcc
Q psy11078 58 ELKQVSTRLENRALSGNIM 76 (86)
Q Consensus 58 ~~~~v~~wl~~~~~~~~~~ 76 (86)
++-.+..||.+.+...++|
T Consensus 15 dlYKvVDfLNktLK~~~lm 33 (52)
T PF14084_consen 15 DLYKVVDFLNKTLKDKNLM 33 (52)
T ss_pred cHHHHHHHHhhhhhhccEE
Confidence 4668899999999888654
No 257
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=20.15 E-value=1.4e+02 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.1
Q ss_pred CCCeEEEEeCCCCCCC
Q psy11078 40 VKNVTFNTYSGLQHSS 55 (86)
Q Consensus 40 g~~v~~~~y~g~~H~~ 55 (86)
-+.+.|..|+|.||-=
T Consensus 98 eI~I~fsywDGs~hrr 113 (239)
T PF04921_consen 98 EIEIPFSYWDGSGHRR 113 (239)
T ss_pred eeEEEEEEECCCCCcc
Confidence 4578999999999954
No 258
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=20.07 E-value=1.6e+02 Score=19.88 Aligned_cols=27 Identities=19% Similarity=-0.021 Sum_probs=21.6
Q ss_pred ccChHHHHHHHHHHhcCCCCeEEEEeC
Q psy11078 23 IVPYMWGQLTSSLLKGFVKNVTFNTYS 49 (86)
Q Consensus 23 vVp~~~~~~~~~~l~~~g~~v~~~~y~ 49 (86)
.||.+.+++.+++|-++|+.--+..-|
T Consensus 153 tVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 153 TVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred EccHHHHHHHHHHHHHcCCceEEeccc
Confidence 478899999999999999866555444
Done!