RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11078
         (86 letters)



>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase.  This
           family consists of both phospholipases and
           carboxylesterases with broad substrate specificity, and
           is structurally related to alpha/beta hydrolases
           pfam00561.
          Length = 213

 Score = 57.7 bits (140), Expect = 8e-12
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5   GNPNVNTR--FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
            +P        LQ HG  DP+VP   G+L    LK  +  VTF +Y G+ HS  P+
Sbjct: 145 QHPTGVADIPILQLHGYEDPVVPLALGKLAKEYLKTLLNPVTFKSYPGMGHSICPQ 200


>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
           only].
          Length = 207

 Score = 30.0 bits (68), Expect = 0.11
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 4   TGNPNVN-TRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
              P++  T  L +HG  DP+VP    +  +  L     +V    + G  H   PE
Sbjct: 139 ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHEG-GHEIPPE 193


>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296).  This
          putative domain is found in proteins that contain
          AT-hook motifs pfam02178, which strongly suggests a
          DNA-binding function for the proteins as a whole. There
          are three highly conserved histidine residues, eg at
          117, 119 and 133 in Reut_B5223, which should be a
          structurally conserved metal-binding unit, based on
          structural comparison with known metal-binding
          structures. The proteins should work as trimers.
          Length = 120

 Score = 28.3 bits (64), Expect = 0.26
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 38 GFVKNVTFNTYSGLQHSSNPELKQVSTRLENRALSGNIMETGKVT 82
          G V NVT       + + +  +  +  R E  +LSG I   GK +
Sbjct: 36 GAVSNVTLRQPD--EEAKSYGVVTLEGRFEILSLSGTISPGGKPS 78


>gnl|CDD|165586 PHA03342, PHA03342, US22 family homolog; Provisional.
          Length = 511

 Score = 27.3 bits (60), Expect = 1.1
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 6   NPNVNTRFLQAHGDC-DPIVPYMWGQLTSSLLK 37
           +PNV  R L+   D  DP+  Y    L  ++  
Sbjct: 400 DPNVAARALKTEADNGDPMKEY-EDNLELAIAH 431


>gnl|CDD|182955 PRK11089, PRK11089, PTS system glucose-specific transporter
           subunits  IIBC; Provisional.
          Length = 477

 Score = 26.2 bits (58), Expect = 2.1
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 23/74 (31%)

Query: 17  HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQ-------HSSNPELKQVSTRLENR 69
           HGD   I  YM G  T+  L G      F  Y GL        HS+ PE         NR
Sbjct: 234 HGD---IPRYMAGDPTAGKLSG---GFLFKMY-GLPAAAIAIWHSAKPE---------NR 277

Query: 70  ALSGNIMETGKVTS 83
           A  G IM +  +TS
Sbjct: 278 AKVGGIMISAALTS 291


>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
          Length = 535

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 54  SSNPELKQVSTRLENRALS 72
           S   ELKQ+ +RL  RA S
Sbjct: 94  SERQELKQIESRLTERATS 112


>gnl|CDD|218985 pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase
           (AceK).  This family consists of several bacterial
           isocitrate dehydrogenase kinase/phosphatase (AceK)
           proteins (EC:2.7.1.116).
          Length = 562

 Score = 25.6 bits (57), Expect = 4.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 5   GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNV 43
           G+P V   FL+ H D   +    W  L   + +G V +V
Sbjct: 518 GDPRVREAFLELHPDL--LDADYWQGLQQRIREGHVPDV 554


>gnl|CDD|145995 pfam03148, Tektin, Tektin family.  Tektins are cytoskeletal
           proteins. They have been demonstrated in such cellular
           sites as centrioles, basal bodies, and along ciliary and
           flagellar doublet microtubules. Tektins form unique
           protofilaments, organised as longitudinal polymers of
           tektin heterodimers with axial periodicity matching
           tubulin. Tektin polypeptides consist of several
           alpha-helical regions that are predicted to form coiled
           coils. Indeed, tektins share considerable structural
           similarities with intermediate filament proteins.
           Possible functional roles for tektins are: stabilisation
           of tubulin protofilaments; attachment of A and B-tubules
           in ciliary/flagellar microtubule doublets and C-tubules
           in centrioles; binding of axonemal components.
          Length = 384

 Score = 25.2 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 51  LQHSSNPELKQVSTRLENRALSGNI 75
           ++    P LK   TRLENR    N+
Sbjct: 288 IRDKEGP-LKVAQTRLENRTQRPNV 311


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0803    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,026,961
Number of extensions: 293478
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 10,937,602
Length adjustment: 54
Effective length of query: 32
Effective length of database: 8,542,486
Effective search space: 273359552
Effective search space used: 273359552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)