RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11078
(86 letters)
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 70.6 bits (173), Expect = 9e-17
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 2 AATGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
A + V Q HG D +V + W + T+S+LK F+++ + H +
Sbjct: 162 ALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELSKT 218
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 68.3 bits (167), Expect = 6e-16
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 2 AATGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK--NVTFNTYSGLQHSSNPE 58
G N + LQ HGDCDP+VP M+G LT LK V NVTF TY G+ HSS +
Sbjct: 157 GPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQ 215
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 65.9 bits (161), Expect = 5e-15
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
+ L HG D +V G+ L+ V ++ Y + H + E
Sbjct: 164 HKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDY-PMGHEVSLE 213
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 64.8 bits (158), Expect = 1e-14
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HG D +V G+ LK VT+ Y + H P+
Sbjct: 153 ASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY-PMGHEVLPQ 204
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 49.6 bits (118), Expect = 6e-09
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
R L G+ DPI P + LK V + G H
Sbjct: 188 TRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIRSG 235
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 46.4 bits (110), Expect = 8e-08
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
A G DPI + LL+ NVT + + H
Sbjct: 166 GKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLTMG 213
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 45.9 bits (109), Expect = 1e-07
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
+ ++ D IVP L+ + S H E
Sbjct: 149 DKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSL-GHQLTQE 196
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 39.9 bits (93), Expect = 2e-05
Identities = 8/49 (16%), Positives = 10/49 (20%), Gaps = 2/49 (4%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
R L G D + +LL V H
Sbjct: 158 GIRTLIIAGAADETYGP-FVPALVTLLSRHGAEVDARIIPS-GHDIGDP 204
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 32.8 bits (74), Expect = 0.007
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLK--GFVKNVTFNTYSGLQHSSNPELKQVSTR-- 65
L HG D IVP + T L+ + G H+ P + +V
Sbjct: 172 GVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPLMARVGLAFL 231
Query: 66 ---LENR 69
LE R
Sbjct: 232 EHWLEAR 238
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 32.4 bits (73), Expect = 0.011
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 1 MAATGNPNV-----NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS 54
+ G+ + + H + DP+VP ++ L V + Y
Sbjct: 294 ICGGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFME 352
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 29.8 bits (67), Expect = 0.068
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
AH + D VP + + V + TF + +H
Sbjct: 212 VFIAHCNGDYDVPVEESE----HIMNHVPHSTFERVNKNEH 248
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 29.5 bits (66), Expect = 0.090
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSS 55
+ + D + + +L+ +F + G H
Sbjct: 238 KIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFD 281
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 29.5 bits (67), Expect = 0.091
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HGD D IVPY + + L + N TY G H
Sbjct: 220 LVMHGDDDQIVPY---ENSGVLSAKLLPNGALKTYKGYPHGMPTT 261
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 29.2 bits (66), Expect = 0.11
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HGD D +VP + + VK T YSG H
Sbjct: 217 LVVHGDADQVVPI---EASGIASAALVKGSTLKIYSGAPHGLTDT 258
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A
{Pseudomonas aeruginosa} PDB: 3ttk_A
Length = 346
Score = 28.8 bits (65), Expect = 0.16
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWG 29
N+N + DP +PYMWG
Sbjct: 89 NLNKDLMHTLEVSDPGNEHAIPYMWG 114
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 28.8 bits (65), Expect = 0.16
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWG 29
N++ L+ DP +PYMW
Sbjct: 85 NLDPELLKLVAKHDPDNKFAMPYMWA 110
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine;
HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Length = 340
Score = 28.8 bits (65), Expect = 0.17
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWG 29
N++ L+ DP VPY+WG
Sbjct: 86 NLDPALLKQLEVSDPGNQYAVPYLWG 111
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 28.1 bits (63), Expect = 0.27
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQ 61
L HGD D +VP T + N Y G H
Sbjct: 216 LVVHGDDDQVVPI---DATGRKSAQIIPNAELKVYEGSSHGIAMVPGD 260
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 27.7 bits (62), Expect = 0.35
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 7 PNVNTRFLQAHGDCDPIVPY----MWGQLTSSLLKGFVKNVTFNTYSGLQH 53
P + FL G D + + +L S ++ T Y G H
Sbjct: 243 PKLTVPFLLLQGSADRLCDSKGAYLLMELAKS------QDKTLKIYEGAYH 287
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 27.7 bits (62), Expect = 0.35
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLEN 68
HGD D VPY S KN T G H + L+ V+ ++
Sbjct: 196 HGDQDEAVPYE----ASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKE 243
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 27.6 bits (62), Expect = 0.41
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 7 PNVNTRFLQAHGDCDPIVPY----MWGQLTSSLLKGFVKNVTFNTYSGLQH 53
P + FL G D + + +L S ++ T Y G H
Sbjct: 225 PKLTVPFLLLQGSADRLCDSKGAYLLMELAKS------QDKTLKIYEGAYH 269
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 27.6 bits (62), Expect = 0.42
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSN 56
L HGD D IVP+ + T + +K Y H
Sbjct: 215 LVIHGDGDQIVPF---ETTGKVAAELIKGAELKVYKDAPHGFA 254
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 27.1 bits (60), Expect = 0.65
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV---KNVTFNTYSGLQHS-SNPELKQVSTR 65
N +L HG D V + Q ++ + K V + YS H S + T
Sbjct: 653 NVDYLLIHGTADDNVHF---QNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTH 709
Query: 66 LEN---RALS 72
+ + + S
Sbjct: 710 MTHFLKQCFS 719
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.1 bits (60), Expect = 0.67
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPEL 59
L + DPI P G+ + L+ G+ H+ +
Sbjct: 241 LVIQAEHDPIAPAPHGKHLAGLIPT----ARLAEIPGMGHALPSSV 282
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 26.8 bits (60), Expect = 0.70
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWGQLTSSLL--KGFVKNVTFNTYSGLQHSSNPELK 60
N++ L DP +PY+WG +++ V + +++ L PE K
Sbjct: 86 NLDPDMLNK--PFDPNNDYSIPYIWG--ATAIGVNGDAVDPKSVTSWADL---WKPEYK 137
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.0 bits (60), Expect = 0.73
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
L HG D I+P T+ V + G H
Sbjct: 223 LILHGTKDNILPI---DATARRFHQAVPEADYVEVEGAPH 259
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 27.1 bits (60), Expect = 0.74
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELK 60
CD + +L K ++ + F ++ +K
Sbjct: 391 TKLCDAMKILDGKKL----YKDYLLKINFTAPFNPNKDADSIVK 430
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 26.7 bits (59), Expect = 0.91
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS-SNPELKQV 62
HG D +V S +N T + G H S+ K
Sbjct: 214 HGTDDTVVSPN----ASKKYDQIYQNSTLHLIEGADHCFSDSYQKNA 256
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 26.7 bits (59), Expect = 0.99
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV---KNVTFNTYSGLQHS 54
+L HG D V + Q ++ + K V + Y+ H
Sbjct: 659 QVEYLLIHGTADDNVHF---QQSAQISKALVDVGVDFQAMWYTDEDHG 703
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 26.5 bits (59), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
L AHG D +VPY + + N T +Y GL H
Sbjct: 219 LVAHGTDDQVVPY---ADAAPKSAELLANATLKSYEGLPH 255
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 26.3 bits (58), Expect = 1.2
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 10 NTRFLQAHGDCDPIVPYMWGQLTSSLLKGFV---KNVTFNTYSGLQHS 54
+FL H D + + Q T+ L+ + N + Y H
Sbjct: 655 EQQFLIIHPTADEKIHF---QHTAELITQLIRGKANYSLQIYPDESHY 699
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 26.2 bits (58), Expect = 1.3
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HGD D VP+ + + L + N G H N
Sbjct: 225 LIIHGDSDATVPF---EYSGKLTHEAIPNSKVALIKGGPHGLNAT 266
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 26.3 bits (58), Expect = 1.3
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 25 PYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLENRA 70
WG +SS +V +T+ G S PE + +
Sbjct: 258 GMNWGTASSS-------SVCSDTFHGRSAFSEPESSVIRDIIAEHR 296
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 26.4 bits (58), Expect = 1.4
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 4 TGNPNVNTRFLQAHGD-CDPIVPYMWGQLTSSLLKGFVKNV 43
+P + F + H D W L + + +G V++V
Sbjct: 523 CADPRIGPLFEEMHADLFR---ADYWRALQNRIREGHVEDV 560
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 26.0 bits (57), Expect = 1.5
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 8 NVNTRFLQAHGDCDPIVPY 26
L + D IVP+
Sbjct: 174 QYKGDVLLVEAENDVIVPH 192
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 25.7 bits (57), Expect = 2.1
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKG 38
D + GQ + +
Sbjct: 225 QSAKDSLASPEVGQYMAENIPN 246
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 25.6 bits (55), Expect = 2.3
Identities = 8/52 (15%), Positives = 11/52 (21%), Gaps = 2/52 (3%)
Query: 8 NVNTRFLQAHGDCDPIVP--YMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNP 57
L G D ++ L + Y G H P
Sbjct: 314 KAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEP 365
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 25.3 bits (55), Expect = 3.1
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 7 PNVNTRFLQAHGDCDPIVP 25
L + G D I P
Sbjct: 272 ARAKIPALFSVGLMDNICP 290
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 3.2
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 10 NTRFLQA---HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRL 66
+L+ H + + + ++L+K K + N + + P K+ ++ L
Sbjct: 92 ENCYLEGNDIHA----LAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 67 ENRALSGN 74
GN
Sbjct: 146 FRAVGEGN 153
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 25.3 bits (54), Expect = 3.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 6 NPNVNTRFLQAHGDCDPIVPY 26
P++ T+ + +G D VP
Sbjct: 168 KPDMKTKMIFIYGASDQAVPS 188
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 24.9 bits (55), Expect = 3.5
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
L HG D +P + T+ + + + + G H
Sbjct: 221 LILHGTGDRTLPI---ENTARVFHKALPSAEYVEVEGAPH 257
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 25.2 bits (55), Expect = 3.5
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 14 LQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HG D +P + T+ + + + + G H
Sbjct: 222 LILHGTGDRTLPI---ENTARVFHKALPSAEYVEVEGAPHGLLWT 263
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter,
binding protein; structural genomics, niaid; HET: EPE;
1.50A {Streptococcus pneumoniae TCH8431}
Length = 330
Score = 24.5 bits (54), Expect = 4.9
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWG 29
N+ FL DP +PY WG
Sbjct: 90 NIGPEFLNQ--SFDPGNKFSIPYFWG 113
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein;
polyamine binding, SYPH spermidine, lipoprotein,
transport protein; HET: MES; 1.78A {Treponema pallidum}
Length = 343
Score = 24.6 bits (54), Expect = 5.8
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 5/26 (19%)
Query: 8 NVNTRFLQAHGDCDP----IVPYMWG 29
+ A DP VPY G
Sbjct: 106 FIKESVR-ARIAYDPKMEYSVPYYLG 130
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 23.9 bits (52), Expect = 8.6
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 25 PYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTRLENRA 70
++W + +S + + Y+G S E + V L
Sbjct: 144 DFVWNSIGTS------NSPCSDIYAGTSAFSEVETRVVRDILHEHL 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.127 0.371
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,202,041
Number of extensions: 54097
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 45
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)