RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11078
(86 letters)
>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 229
Score = 48.9 bits (115), Expect = 4e-09
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 5 GNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK--NVTFNTYSGLQHSSNP-ELKQ 61
G N + LQ HGDCDP+VP M+G LT LK V NVTF TY G+ HSS E+
Sbjct: 158 GGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMD 217
Query: 62 VSTRLENR 69
V ++
Sbjct: 218 VKQFIDKL 225
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 218
Score = 46.2 bits (108), Expect = 4e-08
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L HG D +V G+ LK VT+ Y + H P+
Sbjct: 153 ASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY-PMGHEVLPQ 204
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 33.2 bits (74), Expect = 0.001
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
G+ DPI P + LK V + G H
Sbjct: 150 AGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIRSG 190
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus
[TaxId: 1396]}
Length = 202
Score = 33.2 bits (74), Expect = 0.002
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 17 HGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
G DPI + LL+ NVT + + H
Sbjct: 149 AGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLTMG 189
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 31.2 bits (70), Expect = 0.010
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 1 MAATGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVK--NVTFNTYSGLQH 53
A+ + G D V + L F NV++ T +G H
Sbjct: 81 QIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVH 135
>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus
subtilis [TaxId: 1423]}
Length = 318
Score = 30.9 bits (68), Expect = 0.011
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Query: 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQVSTR 65
V L + G D + P + L+ Y H P +
Sbjct: 254 ADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET---KKELKVYRYFGHEYIPAFQTEKLA 310
Query: 66 LENRALSG 73
+ L G
Sbjct: 311 FFKQILKG 318
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 30.6 bits (67), Expect = 0.013
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSS---NPELKQV 62
H D ++ S L+ + + H+ N ++ +
Sbjct: 205 MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKY 257
>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase
IroE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 27.6 bits (60), Expect = 0.14
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 8 NVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSS 55
+ + + + T ++LK N F + L H
Sbjct: 202 MEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 277
Score = 27.2 bits (58), Expect = 0.21
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHS---SNPE 58
P ++ L HG D +P + T+ + + + + G H ++ E
Sbjct: 214 PRIDVPALILHGTGDRTLPI---ENTARVFHKALPSAEYVEVEGAPHGLLWTHAE 265
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 26.8 bits (57), Expect = 0.29
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
V L + DPI P G+ + L+ G+ H+
Sbjct: 232 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLI----PTARLAEIPGMGHALPSS 280
>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
maritima [TaxId: 2336]}
Length = 322
Score = 26.6 bits (57), Expect = 0.34
Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 3/52 (5%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
L + G D I P + + Y H
Sbjct: 259 ARAKIPALFSVGLMDNICPPSTVF---AAYNYYAGPKEIRIYPYNNHEGGGS 307
>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD
{Pseudomonas fluorescens [TaxId: 294]}
Length = 271
Score = 25.6 bits (54), Expect = 0.82
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
+ L HG D +VP L + + + H + E
Sbjct: 208 KTLPNETLIIHGREDQVVPLSSSL----RLGELIDRAQLHVFGRCGHWTQIE 255
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 24.9 bits (52), Expect = 1.4
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 6 NPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
+ L HG D IVP L +K+ H + E
Sbjct: 218 LGRLPHDVLVFHGRQDRIVPLDTSL----YLTKHLKHAELVVLDRCGHWAQLE 266
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 24.8 bits (52), Expect = 1.5
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 4/47 (8%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQH 53
V L G D +VP L+ + H
Sbjct: 205 RKVQVPTLVVQGKDDKVVPVETAYKFLDLI----DDSWGYIIPHCGH 247
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 97
Score = 24.0 bits (52), Expect = 1.8
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 36 LKGFVKNVTFNTYSGLQHSSNPELKQVSTRLENRA 70
++G+ N T G + L ++ LEN
Sbjct: 34 VRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 68
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 24.4 bits (51), Expect = 2.0
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPE 58
+ + G D VP G L + + + +S H + E
Sbjct: 220 GEIKAKTFITWGRDDRFVPLDHGL----KLLWNIDDARLHVFSKCGHWAQWE 267
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 24.3 bits (52), Expect = 2.3
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 2 AATGNPNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYSGLQHSSNPELKQ 61
A+G+ + + H + ++ W S FN S + EL++
Sbjct: 61 VASGDGLFLEEYWKQHKEASAVLVSPW-HRMSY---------FFNPVSNFI---SFELEK 107
Query: 62 VSTRLENRALSGNIMETGK 80
L + GN +
Sbjct: 108 TIKELH--EVVGNAAAKDR 124
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 23.9 bits (50), Expect = 3.4
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 7 PNVNTRFLQAHGDCDPIVPYMWGQLTSSLLKGFVKNVTFNTYS 49
+++ +G D + L S L + + Y+
Sbjct: 310 TDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRKIPPYN 352
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 23.6 bits (50), Expect = 4.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVKN 42
R GD D +VP + + + L+ VK
Sbjct: 335 RVWVYSGDTDSVVPVSSTRRSLAALELPVKT 365
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 23.2 bits (49), Expect = 5.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 12 RFLQAHGDCDPIVPYMWGQLTSSLLKGFVK 41
+ L +GD D +M + L ++
Sbjct: 363 QILLYNGDVDMACNFMGDEWFVDSLNQKME 392
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 23.2 bits (49), Expect = 6.2
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 13 FLQAHGDCDPIVPYMWGQLTSSLLKGFVK 41
+ HG VP+ + + +++ F +
Sbjct: 289 HSRLHGSKSYRVPWAYDDESCDVVRFFTQ 317
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.127 0.371
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,723
Number of extensions: 10503
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 22
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)