Query psy1108
Match_columns 79
No_of_seqs 102 out of 217
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:30:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_G Cytochrome C oxidase po 99.9 5.2E-26 1.8E-30 148.4 4.3 53 23-79 19-71 (97)
2 1v54_G Cytochrome C oxidase po 99.9 5.9E-25 2E-29 140.5 4.1 53 23-79 7-59 (85)
3 1pp9_G Ubiquinol-cytochrome C 61.0 21 0.00071 21.7 4.9 33 26-58 32-67 (81)
4 2y69_J Cytochrome C oxidase po 52.3 28 0.00096 21.2 4.5 19 4-22 5-23 (80)
5 2ohd_A Probable molybdenum cof 38.3 38 0.0013 23.0 3.8 33 40-76 104-136 (151)
6 3tgu_G UQCRQ, mitochondrial ub 37.6 41 0.0014 20.3 3.6 33 26-58 32-67 (81)
7 2ekn_A Probable molybdenum cof 36.1 46 0.0016 22.7 4.0 33 40-76 113-145 (159)
8 3cet_A Conserved archaeal prot 34.5 21 0.00072 26.8 2.2 12 38-49 310-321 (334)
9 2lot_A Apelin receptor; membra 33.0 3.7 0.00013 24.1 -1.8 23 39-62 41-63 (64)
10 3lay_A Zinc resistance-associa 30.3 11 0.00037 25.9 0.0 29 26-54 22-51 (175)
11 3rhw_A Avermectin-sensitive gl 29.3 1.4E+02 0.0048 21.2 5.8 28 27-55 309-336 (347)
12 3l7h_A RE64145P, roadblock; LC 27.4 12 0.00042 23.3 -0.1 11 69-79 66-76 (97)
No 1
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=99.92 E-value=5.2e-26 Score=148.40 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=48.4
Q ss_pred CCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccccCC
Q psy1108 23 AGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRN 79 (79)
Q Consensus 23 ~~~~~~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IRtKp 79 (79)
.|+++++++|||||||||+|+|+||++|+|++++| |++|||++|+||||||||
T Consensus 19 ~ha~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e----h~~~E~~~Y~yl~IR~K~ 71 (97)
T 2y69_G 19 DHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKP 71 (97)
T ss_dssp CCSSCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSC
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCCCchhhhccCC
Confidence 45578899999999999999999999999999877 368999999999999997
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=99.90 E-value=5.9e-25 Score=140.51 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=48.6
Q ss_pred CCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccccCC
Q psy1108 23 AGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRN 79 (79)
Q Consensus 23 ~~~~~~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IRtKp 79 (79)
.|+++++++|||||||||+|+|+||++|+|++++| |++|||++|+||||||||
T Consensus 7 ~ha~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e----~~~pE~~~Y~yl~IR~K~ 59 (85)
T 1v54_G 7 DHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKP 59 (85)
T ss_dssp CCSCCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCCCCCchhheecCC
Confidence 45578899999999999999999999999998876 468999999999999997
No 3
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=60.96 E-value=21 Score=21.67 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.6
Q ss_pred hhhhhhHHHH---HHHhHHHHHHHHHHHHHHHhhhh
Q psy1108 26 PDAVKLWRNL---TYFGALPCCALVGVYVYLEHQAE 58 (79)
Q Consensus 26 ~~~~~~Wkki---S~~valP~i~l~~~n~y~~~~eH 58 (79)
.+--+.||++ -++|++|.|+.-.+..+..+..|
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 4556777777 46788998887666666655443
No 4
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=52.27 E-value=28 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=1.2
Q ss_pred HHHHHHHHHhhcccccccc
Q psy1108 4 RLGQMMMRKFSTSPAMKSS 22 (79)
Q Consensus 4 ~~~~~~~~~~~~s~~r~~~ 22 (79)
-+++...|.|++++.|...
T Consensus 5 ~l~~~~~r~~st~~~r~~~ 23 (80)
T 2y69_J 5 RVSQALVRSFSSTARNRFE 23 (80)
T ss_dssp -----------------CC
T ss_pred HHHHHHHHHhcccchhhhc
Confidence 4678888999999998765
No 5
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=38.27 E-value=38 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccc
Q psy1108 40 ALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIR 76 (79)
Q Consensus 40 alP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IR 76 (79)
||-++.++.+.+|.--+.-.+ . |--+|||+.|.
T Consensus 104 ALtavsvA~LTiyDM~Kavdk-~---e~gqyp~m~I~ 136 (151)
T 2ohd_A 104 ALTATSVALLTIWDMVKKYEK-D---ENGQYPYTEIK 136 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHC-C---TTSCCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhhcccC-C---CCCCCCceEEE
Confidence 677778888888887665432 3 44489999885
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=37.59 E-value=41 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=22.9
Q ss_pred hhhhhhHHHHH---HHhHHHHHHHHHHHHHHHhhhh
Q psy1108 26 PDAVKLWRNLT---YFGALPCCALVGVYVYLEHQAE 58 (79)
Q Consensus 26 ~~~~~~WkkiS---~~valP~i~l~~~n~y~~~~eH 58 (79)
.+--++||++. ++|++|.|+.-.+..|..+..|
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55667777654 6788999987666666665443
No 7
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=36.13 E-value=46 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccc
Q psy1108 40 ALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIR 76 (79)
Q Consensus 40 alP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IR 76 (79)
||-++.++.+.+|.--+.-.+ . |--+||++.|.
T Consensus 113 ALtavsvA~LTiyDM~Kavdk-~---e~gqyp~m~I~ 145 (159)
T 2ekn_A 113 ALTGVTVALLAIWDMVKAVEK-D---EKGQYPYTRIE 145 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-C---TTSCCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhheecC-C---CCCCCCceEEE
Confidence 677778888888887665432 3 44489999885
No 8
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=34.54 E-value=21 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=9.4
Q ss_pred HhHHHHHHHHHH
Q psy1108 38 FGALPCCALVGV 49 (79)
Q Consensus 38 ~valP~i~l~~~ 49 (79)
..|.|+++++.+
T Consensus 310 s~vapA~avA~l 321 (334)
T 3cet_A 310 SLATPSFAVAEL 321 (334)
T ss_dssp HHSHHHHHHHHH
T ss_pred ccccCHHHHHHH
Confidence 578999988755
No 9
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=32.98 E-value=3.7 Score=24.11 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcc
Q psy1108 39 GALPCCALVGVYVYLEHQAEEEHH 62 (79)
Q Consensus 39 valP~i~l~~~n~y~~~~eH~~hh 62 (79)
+++|+=++ .++++...+.|++||
T Consensus 41 lGl~GN~l-vl~v~~~~~~~~~~~ 63 (64)
T 2lot_A 41 LGTTGNGL-VLWTVFRKKGHHHHH 63 (64)
T ss_dssp TTTTSSSS-HHHHHHHHSSSCSCC
T ss_pred HHHhhhhh-heeeeeEeccccccC
Confidence 34444333 356777777765443
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.28 E-value=11 Score=25.86 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHh-HHHHHHHHHHHHHHH
Q psy1108 26 PDAVKLWRNLTYFG-ALPCCALVGVYVYLE 54 (79)
Q Consensus 26 ~~~~~~WkkiS~~v-alP~i~l~~~n~y~~ 54 (79)
+.++|+=||+.+.+ |||+++|.+..+|.-
T Consensus 22 ~~~Mk~~kk~~la~~al~~l~l~s~~A~A~ 51 (175)
T 3lay_A 22 SNAMKRNNKSAIALIALSLLALSSGAAFAG 51 (175)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 57888889987775 799888877666664
No 11
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=29.29 E-value=1.4e+02 Score=21.22 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHHHh
Q psy1108 27 DAVKLWRNLTYFGALPCCALVGVYVYLEH 55 (79)
Q Consensus 27 ~~~~~WkkiS~~valP~i~l~~~n~y~~~ 55 (79)
..+..|-+.-+...+|.+. |.+|+...+
T Consensus 309 ~~~~~~~~~~~~~~~p~~~-~i~n~~~~~ 336 (347)
T 3rhw_A 309 NDISKRVDLISRALFPVLF-FVFNILYWS 336 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 4566786666666799866 567766543
No 12
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=27.44 E-value=12 Score=23.25 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=9.5
Q ss_pred CCCccccccCC
Q psy1108 69 KREYLYIRNRN 79 (79)
Q Consensus 69 ~Y~yl~IRtKp 79 (79)
+-.|||||||+
T Consensus 66 el~fLRiRTkk 76 (97)
T 3l7h_A 66 DMTFLRVRSKK 76 (97)
T ss_dssp CEEEEEEEESS
T ss_pred CeEEEEEEeCC
Confidence 56899999995
Done!