RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1108
         (79 letters)



>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
          VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score = 67.1 bits (164), Expect = 2e-17
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 21 SSAGNPDAV---KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
          S+A         + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR 
Sbjct: 2  SAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRT 57

Query: 78 RN 79
          + 
Sbjct: 58 KP 59


>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
          [TaxId: 9103]}
          Length = 102

 Score = 25.2 bits (54), Expect = 0.66
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 57 AEEEHHVRPEFVKR 70
          AEE+ HV+P F K 
Sbjct: 1  AEEKPHVKPYFTKT 14


>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 112

 Score = 21.9 bits (47), Expect = 9.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 39  GALPCCALVGVYVYLEHQAEEEHHV 63
           G+L  C  V ++V  +   ++  HV
Sbjct: 80  GSLEKCIRVMMHVNTDKDKKDIKHV 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,788
Number of extensions: 11455
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)