Query psy11080
Match_columns 90
No_of_seqs 109 out of 886
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:31:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kta_A Putative helicase; PSI, 28.9 23 0.0008 21.4 1.4 19 26-44 50-68 (74)
2 3id7_A Dipeptidase; streptomyc 18.7 1.9E+02 0.0063 22.5 5.0 34 24-57 170-203 (400)
3 3neh_A Renal dipeptidase famil 18.1 2.1E+02 0.007 21.5 5.0 34 24-57 153-186 (318)
4 2eo2_A Adult MALE hypothalamus 18.0 1.8E+02 0.0062 17.7 4.2 42 25-67 28-70 (71)
5 2i5g_A Amidohydrolase; NYSGXRC 18.0 2.1E+02 0.007 21.3 5.0 34 24-57 138-171 (325)
6 1irz_A ARR10-B; helix-turn-hel 17.3 1.4E+02 0.0047 17.6 3.1 32 21-56 9-40 (64)
7 1xmp_A PURE, phosphoribosylami 16.6 45 0.0015 23.5 1.0 49 3-54 4-54 (170)
8 2wzo_A Transforming growth fac 16.6 32 0.0011 22.8 0.2 28 2-29 26-53 (146)
9 2rag_A Dipeptidase; aminohydro 15.4 2.6E+02 0.0087 21.7 5.1 34 24-57 208-241 (417)
10 3b40_A PVDM, probable dipeptid 14.9 2.6E+02 0.009 21.6 5.1 34 24-57 192-225 (417)
No 1
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=28.87 E-value=23 Score=21.40 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCcccccc
Q psy11080 26 FTTAFIDFFARIGWAYDLK 44 (90)
Q Consensus 26 ~t~~~I~~l~~LGLa~dlk 44 (90)
++.-=|..|..||.+|+|.
T Consensus 50 Ls~eRi~~L~~lGf~w~~~ 68 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLE 68 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHcCCEeccc
Confidence 4445589999999999985
No 2
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=18.68 E-value=1.9e+02 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.6
Q ss_pred cChHHHHHHHHHHcCcccccccCCHHHHHHHHhh
Q psy11080 24 TNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQR 57 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~ 57 (90)
-+.++-+|+-|.+||++-||--++.......+.-
T Consensus 170 T~fG~~vV~eMNrlGmiVDlSH~s~~t~~dvl~~ 203 (400)
T 3id7_A 170 SAFGREVVREMNREGMLVDLSHVAATTMRDALDT 203 (400)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCeEEcCCCCHHHHHHHHHh
Confidence 4788999999999999999999999999887654
No 3
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=18.14 E-value=2.1e+02 Score=21.47 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=30.2
Q ss_pred cChHHHHHHHHHHcCcccccccCCHHHHHHHHhh
Q psy11080 24 TNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQR 57 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~ 57 (90)
-+.++-+|+-|.+||++-||--.+.....+.+.-
T Consensus 153 T~~G~~vV~eMnrlGmivDlSH~s~~t~~dvl~~ 186 (318)
T 3neh_A 153 TRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQ 186 (318)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCeEEcCCCCHHHHHHHHHh
Confidence 4778999999999999999999999998887643
No 4
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=18.03 E-value=1.8e+02 Score=17.69 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHcCcc-cccccCCHHHHHHHHhhcCCCCCCCcc
Q psy11080 25 NFTTAFIDFFARIGWA-YDLKTVSSDMVRTRAQRTGDGSHGDVW 67 (90)
Q Consensus 25 D~t~~~I~~l~~LGLa-~dlk~~~~~~i~~~~~~~~d~~~~~~~ 67 (90)
-.+...++-|++||+- .|--..+++.|.+-+.-..|.+. +.|
T Consensus 28 ~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~T-ITw 70 (71)
T 2eo2_A 28 EFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPAT-ITW 70 (71)
T ss_dssp CCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTT-CCC
T ss_pred ecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccc-eee
Confidence 3566788888888886 45556677777665444445444 444
No 5
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=18.03 E-value=2.1e+02 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.7
Q ss_pred cChHHHHHHHHHHcCcccccccCCHHHHHHHHhh
Q psy11080 24 TNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQR 57 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~ 57 (90)
-+.++-+|+.|.++|++-|+--.+.....+.+..
T Consensus 138 T~~G~~vV~emnrlGmivDlSH~s~~~~~dvl~~ 171 (325)
T 2i5g_A 138 SGFGREIVAEMNRVGIMCDLSHVGSKTSEEVILE 171 (325)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCcEEEcCcCCHHHHHHHHHH
Confidence 4778999999999999999999999988887643
No 6
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=17.25 E-value=1.4e+02 Score=17.59 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=24.9
Q ss_pred CCccChHHHHHHHHHHcCcccccccCCHHHHHHHHh
Q psy11080 21 TYGTNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQ 56 (90)
Q Consensus 21 ~~~~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~ 56 (90)
-|.-++-..|+.+++.|| . ..+.+..|.+.+.
T Consensus 9 ~WT~elH~~Fv~Av~~LG-~---~~AtPk~Il~~M~ 40 (64)
T 1irz_A 9 LWTHELHNKFLAAVDHLG-V---ERAVPKKILDLMN 40 (64)
T ss_dssp SSCHHHHHHHHHHHHHHC-T---TTCCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-C---CCCCcHHHHHHcC
Confidence 468899999999999999 2 3577777766553
No 7
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=16.62 E-value=45 Score=23.46 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=28.9
Q ss_pred ccCccccCCccccccccCCCc--cChHHHHHHHHHHcCcccccccCCHHHHHHH
Q psy11080 3 WHNYHHVFPWDYKTSELGTYG--TNFTTAFIDFFARIGWAYDLKTVSSDMVRTR 54 (90)
Q Consensus 3 wHN~HHaFP~dyr~g~~~~~~--~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~ 54 (90)
-|..||.-| +.+...--. +..-.-....|+.||+-+|++.++..+..++
T Consensus 4 ~~~~~~~~~---~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~ 54 (170)
T 1xmp_A 4 HHHHHHMKS---LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDY 54 (170)
T ss_dssp -------CC---SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHH
T ss_pred ccccccCCC---cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHH
Confidence 466788888 566542223 4455678899999999999999876444443
No 8
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=16.58 E-value=32 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=20.3
Q ss_pred CccCccccCCccccccccCCCccChHHH
Q psy11080 2 GWHNYHHVFPWDYKTSELGTYGTNFTTA 29 (90)
Q Consensus 2 gwHN~HHaFP~dyr~g~~~~~~~D~t~~ 29 (90)
+|||=++.||--|++...-|--.||...
T Consensus 26 ~fh~~~~IyPvGy~~~R~y~s~~dp~~~ 53 (146)
T 2wzo_A 26 GFHDESAIYPVGYCSTRIYASMKCPDQK 53 (146)
T ss_dssp GGBCSSCBCCEEEEEEEEEECSSCTTSE
T ss_pred CccCCCceeCCCEEEEEEEecccCCCCe
Confidence 6999999999999998632323466543
No 9
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=15.43 E-value=2.6e+02 Score=21.70 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.3
Q ss_pred cChHHHHHHHHHHcCcccccccCCHHHHHHHHhh
Q psy11080 24 TNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQR 57 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~ 57 (90)
-+.++-+|+-|.+||++-||--++.......+..
T Consensus 208 T~~G~~vV~eMnrlGmivDlSH~s~~t~~dvl~~ 241 (417)
T 2rag_A 208 SPLGLRWLAEANRLGIVIDVSHASDDVVDQSVAL 241 (417)
T ss_dssp CHHHHHHHHHHHHHTCEEBCTTBCHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHcCCEEECCCCCHHHHHHHHHh
Confidence 4778999999999999999999999999887643
No 10
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=14.89 E-value=2.6e+02 Score=21.62 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=30.3
Q ss_pred cChHHHHHHHHHHcCcccccccCCHHHHHHHHhh
Q psy11080 24 TNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQR 57 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~ 57 (90)
-+.++-+|+-|.+||++-||--++...+...+..
T Consensus 192 T~~G~~vV~eMNrlGmiVDlSH~s~~t~~dvl~~ 225 (417)
T 3b40_A 192 SPLGKQAVERLNDLGVIIDVSQMSTKALEQVAAL 225 (417)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCEEECCCCCHHHHHHHHHh
Confidence 4778999999999999999999999999887643
Done!