Query psy11080
Match_columns 90
No_of_seqs 109 out of 886
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 17:31:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11080.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11080hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1whva_ d.58.7.1 (A:) Poly(A)- 11.7 25 0.0018 21.3 0.2 27 4-41 17-43 (100)
2 d1aisb2 a.74.1.2 (B:1206-1300) 10.9 52 0.0038 18.2 1.5 21 24-44 1-21 (95)
3 d1n1ba1 a.102.4.1 (A:64-270) ( 10.8 53 0.0038 21.7 1.7 17 28-44 44-60 (207)
4 d1hkva2 c.1.6.1 (A:46-310) Dia 10.7 1E+02 0.0074 19.7 3.2 56 8-68 14-69 (265)
5 d5easa1 a.102.4.1 (A:24-220) 5 10.6 54 0.0039 21.5 1.7 17 28-44 45-61 (197)
6 d1k0da2 c.47.1.5 (A:109-200) Y 9.5 81 0.0059 17.2 2.0 23 26-48 16-38 (92)
7 d2fd6u3 g.7.1.3 (U:92-188) Uro 9.3 26 0.0019 21.0 -0.4 6 2-7 67-72 (97)
8 d1whza_ d.50.3.2 (A:) Hypothet 9.0 65 0.0047 17.4 1.3 17 28-44 8-24 (70)
9 d2evra2 d.3.1.16 (A:87-234) Ce 8.9 1.2E+02 0.0087 18.5 2.8 20 20-39 34-53 (148)
10 d1ofcx1 a.4.1.3 (X:799-850) SA 8.9 1.4E+02 0.0099 15.6 2.7 25 29-53 9-39 (52)
No 1
>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.67 E-value=25 Score=21.27 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=17.1
Q ss_pred cCccccCCccccccccCCCccChHHHHHHHHHHcCccc
Q psy11080 4 HNYHHVFPWDYKTSELGTYGTNFTTAFIDFFARIGWAY 41 (90)
Q Consensus 4 HN~HHaFP~dyr~g~~~~~~~D~t~~~I~~l~~LGLa~ 41 (90)
|=||=+||..++..+ +..+|.-+|.|+
T Consensus 17 HVf~~tFP~~Wk~~d-----------I~~lFSpfG~V~ 43 (100)
T d1whva_ 17 HVLHVTFPKEWKTSD-----------LYQLFSAFGNIQ 43 (100)
T ss_dssp SEEEEECCTTCCHHH-----------HHHHHTTTCSCC
T ss_pred eeEEEeCCcccchhH-----------HHHHhcCCCceE
Confidence 557888996655443 345667777664
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=10.89 E-value=52 Score=18.20 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.3
Q ss_pred cChHHHHHHHHHHcCcccccc
Q psy11080 24 TNFTTAFIDFFARIGWAYDLK 44 (90)
Q Consensus 24 ~D~t~~~I~~l~~LGLa~dlk 44 (90)
++|.-++-|++++|||-..+.
T Consensus 1 i~P~d~I~R~~~~L~L~~~i~ 21 (95)
T d1aisb2 1 VKPTDYVNKFADELGLSEKVR 21 (95)
T ss_dssp CCGGGGHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHcCcCHHHH
Confidence 478888999999999955443
No 3
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=10.78 E-value=53 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCcccccc
Q psy11080 28 TAFIDFFARIGWAYDLK 44 (90)
Q Consensus 28 ~~~I~~l~~LGLa~dlk 44 (90)
-.+|+.+++||+.+-..
T Consensus 44 L~lID~lqRLGisyhFe 60 (207)
T d1n1ba1 44 LELIHDLKYLGLSDFFQ 60 (207)
T ss_dssp HHHHHHHHHTTCGGGGH
T ss_pred HHHHHHHHHcCcHHHHH
Confidence 36899999999998774
No 4
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.70 E-value=1e+02 Score=19.74 Aligned_cols=56 Identities=5% Similarity=-0.036 Sum_probs=37.1
Q ss_pred ccCCccccccccCCCccChHHHHHHHHHHcCcccccccCCHHHHHHHHhhcCCCCCCCccC
Q psy11080 8 HVFPWDYKTSELGTYGTNFTTAFIDFFARIGWAYDLKTVSSDMVRTRAQRTGDGSHGDVWG 68 (90)
Q Consensus 8 HaFP~dyr~g~~~~~~~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~~~~~~d~~~~~~~g 68 (90)
-+||.+++.-- --.-++...+++.|...|+ .+-.+|...++.++..-.+..+ +.+.
T Consensus 14 ~af~~~~~i~Y--A~KaN~~~~vl~~l~~~G~--g~dvaS~~El~~al~~G~~~~~-Ii~~ 69 (265)
T d1hkva2 14 AAFGSGANVHY--AAKAFLCSEVARWISEEGL--CLDVCTGGELAVALHASFPPER-ITLH 69 (265)
T ss_dssp HHTTSGGGBEE--EGGGSCCHHHHHHHHHHTC--EEEECSHHHHHHHHHTTCCGGG-EEEC
T ss_pred HhcCCCCeEEE--EeccCCCHHHHHHHHHcCC--CeEEeChhhHHHHHHcCCCHHH-heec
Confidence 35775544321 2346899999999999997 6777899888876654334433 4443
No 5
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=10.61 E-value=54 Score=21.52 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCcccccc
Q psy11080 28 TAFIDFFARIGWAYDLK 44 (90)
Q Consensus 28 ~~~I~~l~~LGLa~dlk 44 (90)
-.+|+.+++||+.+...
T Consensus 45 L~lID~LqRLGi~yhFe 61 (197)
T d5easa1 45 LNLIDIIERLGISYHFE 61 (197)
T ss_dssp HHHHHHHHHTTCGGGGH
T ss_pred HHHHHHHHHcCcHHHHH
Confidence 46899999999998874
No 6
>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.50 E-value=81 Score=17.21 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCcccccccCCH
Q psy11080 26 FTTAFIDFFARIGWAYDLKTVSS 48 (90)
Q Consensus 26 ~t~~~I~~l~~LGLa~dlk~~~~ 48 (90)
.+..+..+|+.+|+-++++.++.
T Consensus 16 ~~~kV~~~L~e~gi~ye~~~v~~ 38 (92)
T d1k0da2 16 NGFKVAIVLSELGFHYNTIFLDF 38 (92)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCT
T ss_pred cHHHHHHHHHHcCCCCEEEEeec
Confidence 46778889999999999988764
No 7
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.25 E-value=26 Score=21.03 Aligned_cols=6 Identities=50% Similarity=1.055 Sum_probs=4.3
Q ss_pred CccCcc
Q psy11080 2 GWHNYH 7 (90)
Q Consensus 2 gwHN~H 7 (90)
|+||||
T Consensus 67 GFH~n~ 72 (97)
T d2fd6u3 67 GFHNND 72 (97)
T ss_dssp EEEETT
T ss_pred cccCCc
Confidence 678874
No 8
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=9.00 E-value=65 Score=17.38 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCcccccc
Q psy11080 28 TAFIDFFARIGWAYDLK 44 (90)
Q Consensus 28 ~~~I~~l~~LGLa~dlk 44 (90)
+-+|++|++.|+.-...
T Consensus 8 kelik~L~~~Gf~~~rq 24 (70)
T d1whza_ 8 EEVARKLRRLGFVERMA 24 (70)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCcEEecc
Confidence 56899999999876543
No 9
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=8.95 E-value=1.2e+02 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=17.0
Q ss_pred CCCccChHHHHHHHHHHcCc
Q psy11080 20 GTYGTNFTTAFIDFFARIGW 39 (90)
Q Consensus 20 ~~~~~D~t~~~I~~l~~LGL 39 (90)
...-+|++.++-+++...|+
T Consensus 34 ~~~g~DCSGlv~~~y~~~Gi 53 (148)
T d2evra2 34 VGPNYDCSGLMQAAFASVGI 53 (148)
T ss_dssp SSSSCCHHHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHcCC
Confidence 34569999999999999886
No 10
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.90 E-value=1.4e+02 Score=15.56 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHcC------cccccccCCHHHHHH
Q psy11080 29 AFIDFFARIG------WAYDLKTVSSDMVRT 53 (90)
Q Consensus 29 ~~I~~l~~LG------La~dlk~~~~~~i~~ 53 (90)
-||+++++-| +|..+..=+++.|++
T Consensus 9 ~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~ 39 (52)
T d1ofcx1 9 QFIKANEKYGRDDIDNIAKDVEGKTPEEVIE 39 (52)
T ss_dssp HHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence 4789999888 466665556666655
Done!