RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11080
         (90 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.44
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 4  HNYHHVFPWDYKTSELGTYGTNFTTAFIDFFARIGWAYDLKTVSSDMVR 52
          H++HH+   D++T E      +  + F D F      +D K V  DM +
Sbjct: 2  HHHHHM---DFETGEHQYQYKDILSVFEDAFVD---NFDCKDV-QDMPK 43



 Score = 26.4 bits (57), Expect = 1.5
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)

Query: 3   WHNY--HHVFPWDYKTSELGTYGTNFTTAFIDF 33
           ++++  HH+     K  E     T F   F+DF
Sbjct: 473 FYSHIGHHL-----KNIEHPERMTLFRMVFLDF 500


>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
          multisubunit tethering complex, snare proteins; 2.60A
          {Kluyveromyces lactis}
          Length = 357

 Score = 27.0 bits (59), Expect = 0.82
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 44 KTVSSDMVRTRAQRTGDGSHGDVWGWGDKDMSAEDK 79
          +      +    ++T +G   + WGW +   S E  
Sbjct: 46 EKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHD 81


>2jop_A T-cell surface glycoprotein CD5; domain 1, scavenger receptor
          cysteine rich, SRCR, immune system; NMR {Homo sapiens}
          PDB: 2jp0_A
          Length = 131

 Score = 26.3 bits (58), Expect = 1.0
 Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 6/29 (20%)

Query: 63 HGDVWG------WGDKDMSAEDKQDATVV 85
            D W       WG      ED   A+ V
Sbjct: 49 LKDGWHMVCSQSWGRSSKQWEDPSQASKV 77


>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
           oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
           3u33_A*
          Length = 541

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 7/34 (20%)

Query: 48  SD--MVRTRAQRTGDGS---HGDVW--GWGDKDM 74
           SD     TRA+R  DGS    G  W       D 
Sbjct: 191 SDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDA 224


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.454 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,462,798
Number of extensions: 70382
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)