RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11080
         (90 letters)



>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
          beige-like anchor protein LRBA {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 304

 Score = 23.4 bits (50), Expect = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 1  MGWHNYHHVFPW---DYKTSEL 19
              N + VFPW   +Y++ EL
Sbjct: 52 YNDLNQYPVFPWVITNYESEEL 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.454 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,515
Number of extensions: 13928
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)