BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11081
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/268 (69%), Positives = 196/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
+RKL+DQCTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 VRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 195/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 195/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 195/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 195/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 195/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAG VQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAG----------------------------VQIGNACWELYCLEHGIQPD 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGD DSFNTFFSETG+GKH
Sbjct: 34 GQMPSDKTIGGGD--------------------------------DSFNTFFSETGAGKH 61
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/234 (62%), Positives = 169/234 (72%), Gaps = 31/234 (13%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
NVGQAG QIGNACWELY LEHGI+PDG + E G K P+
Sbjct: 8 NVGQAGCQIGNACWELYSLEHGIKPDGHL------------------EDGLSK--PK--- 44
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
GG++ F+TFF ETG GK VPRA++VDLEP V+DEVR G Y+ LFHPEQLI+G
Sbjct: 45 --------GGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISG 96
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLME 214
KEDAANNYARGHYT+G+EI+ VLDRIRKL+DQC GLQGFL H LL+E
Sbjct: 97 KEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLE 156
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
LS +YGKKSKLEFA+YPAPQVST+VVEPYN++LTTHTTLEH+DC FMVDNEAI
Sbjct: 157 ELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAI 210
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 207
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 207
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 207
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEAL 207
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEAL 207
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEAL 207
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEAL 207
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEAL 207
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G+
Sbjct: 41 DLQL------ERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + H LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+
Sbjct: 155 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 207
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 117/234 (50%), Gaps = 34/234 (14%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
+ GQ G QIG A WE C EHG+ +G T G DD
Sbjct: 8 STGQCGNQIGAAFWETICGEHGLDFNG------TYHGHDDI------------------- 42
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
+ N +F+E SGK VPR++ VDLEP +D VR LF P+ I G
Sbjct: 43 ---------QKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFG 93
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLME 214
+ A N +A+GHYT G E+VD V+D IR+ ++ C LQGF I H LL+
Sbjct: 94 QSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLIS 153
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
++ ++ + F++ P+P+ S VEPYN+ L+ H +EHSD F +DNEA+
Sbjct: 154 KIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSVHQLVEHSDETFCIDNEAL 207
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 34/235 (14%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAV 93
++GQAG QI + W+ CLEHGI P GQ G ++++FFS+ G
Sbjct: 10 SIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRG---NWSSFFSKLG--------- 57
Query: 94 FVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIT 153
E+ SG +VPRA+ VDLEP+V+D V+ T LF+P LI+
Sbjct: 58 --------------------ESSSGSYVPRAIMVDLEPSVIDNVK-ATSGSLFNPANLIS 96
Query: 154 GKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLM 213
E A N+A G+ G+E++ V+ R+ D+C + G ++ H LL+
Sbjct: 97 RTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLI 156
Query: 214 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
E L YG+ L A+ P+PQVS+ V EPYN++ +T +D + DNEA+
Sbjct: 157 ESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEAL 211
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 33/233 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
VGQ G QI ++ W L EHG+ +E G+ K
Sbjct: 9 VGQCGNQIADSFWRLALREHGL-----------------------TEAGTLK-------- 37
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
E + + + FF + GK+VPRAV VDLEP V+ + G QLF ++
Sbjct: 38 --EGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKI 95
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLMER 215
AANN+ARG+ G++++D +++ I ++ GLQGFL+ H L++ER
Sbjct: 96 PGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILER 155
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
L Y KK F++ P+P +S + VEPYN+ILT L+++D A ++DNEA+
Sbjct: 156 LRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEAL 208
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 38/236 (16%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
+GQ G QIG W+ C EHGI P+
Sbjct: 10 LGQCGNQIGFEFWKQLCAEHGISPEAI--------------------------------- 36
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
+E G D + FF + ++PRAV +DLEP V+ + Y +L++PE + +
Sbjct: 37 -VEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSE 95
Query: 156 ED--AANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLM 213
A NN+A G ++ G++I + + D I + +D L+GF++ H L+
Sbjct: 96 HGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLL 154
Query: 214 ERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
ERL+ Y KK ++++P ++S VV+PYNS+LT +++DC ++DN A+
Sbjct: 155 ERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTAL 210
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 38/236 (16%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
+GQ G QIG W+ C EHGI P+
Sbjct: 10 LGQCGNQIGFEFWKQLCAEHGISPEAI--------------------------------- 36
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
+E G D + FF + ++PRAV +DLEP V+ + Y +L++PE + +
Sbjct: 37 -VEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSE 95
Query: 156 ED--AANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHXXXXXXXXXXXXLLM 213
A NN+A G ++ G++I + + D I + +D L+GF++ H L+
Sbjct: 96 HGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLL 154
Query: 214 ERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
ERL+ Y KK ++++P ++S VV+PYNS+LT +++DC ++DN A+
Sbjct: 155 ERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTAL 210
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 22 LYCLEHGIQPDDA------NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDS 75
+ C +HG+ P A N G+ ++ + C +HG+ PD Q+ + + GGG +
Sbjct: 373 VLCQDHGLTPAQAVAIANNNGGKQALETVQRLLPVLCQDHGLTPD-QVVAIASNGGGKQA 431
Query: 76 FNTFFSE 82
+ ++
Sbjct: 432 LESIVAQ 438
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 26 EHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGS 85
GI+P + A VQ+GN ELY + G P N + S+
Sbjct: 69 RQGIKPGET----ALVQLGNVA-ELYITFFALLKLGVAPVLALFSHQRSELNAYASQIE- 122
Query: 86 GKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHV 121
P + D + + GDD NTF +E S + V
Sbjct: 123 ----PALLIADRQHALFSGDDFLNTFVTEHSSIRVV 154
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 119 KHVPRAVFVDLEPTVVDEVRTGT--YRQ-LFHPE---QLITGKEDAANNYARGHYTIGKE 172
+H+ + FV EPT++ +V T +R+ +F P + + +E+A N HY +G
Sbjct: 367 EHLKKGYFV--EPTIITDVTTSMQIWREEVFGPVLAVKTFSTEEEAINLANDTHYGLGSA 424
Query: 173 IVDVVLDRIRKLSDQCTGLQGFLIF 197
++ L+R +LS LQ +++
Sbjct: 425 VMSNDLERCERLSK---ALQAGIVW 446
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 132 TVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 172
TVV E +T T + P+Q+I+ K+ A+ Y + ++ K+
Sbjct: 5 TVVAETKTSTASETSEPKQVISSKQQLASLYLQAKQSLFKQ 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,574,473
Number of Sequences: 62578
Number of extensions: 375589
Number of successful extensions: 828
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 82
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)