Query psy11081
Match_columns 280
No_of_seqs 158 out of 1455
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:32:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2E-75 4.4E-80 530.6 17.9 215 1-277 2-216 (443)
2 KOG1374|consensus 100.0 1.6E-61 3.4E-66 440.4 16.7 214 1-277 3-219 (448)
3 PLN00221 tubulin alpha chain; 100.0 3.4E-61 7.4E-66 463.2 17.9 217 1-277 2-218 (450)
4 PTZ00335 tubulin alpha chain; 100.0 3.9E-60 8.5E-65 455.6 18.4 217 1-277 2-218 (448)
5 cd02188 gamma_tubulin Gamma-tu 100.0 1.7E-58 3.7E-63 442.4 17.3 214 1-277 1-217 (431)
6 PLN00220 tubulin beta chain; P 100.0 4.1E-58 8.8E-63 442.5 18.6 215 1-277 2-216 (447)
7 cd02186 alpha_tubulin The tubu 100.0 5.9E-58 1.3E-62 439.7 17.8 217 1-277 1-217 (434)
8 cd02187 beta_tubulin The tubul 100.0 1.3E-57 2.8E-62 436.5 19.1 215 1-277 1-215 (425)
9 PTZ00010 tubulin beta chain; P 100.0 9.5E-58 2.1E-62 439.3 18.2 215 1-277 2-216 (445)
10 PLN00222 tubulin gamma chain; 100.0 1.5E-57 3.2E-62 438.1 17.7 214 1-277 3-219 (454)
11 PTZ00387 epsilon tubulin; Prov 100.0 4.9E-57 1.1E-61 435.1 18.3 214 1-277 2-216 (465)
12 cd02189 delta_tubulin The tubu 100.0 3.6E-55 7.8E-60 421.7 16.9 208 3-277 2-211 (446)
13 cd02190 epsilon_tubulin The tu 100.0 4.9E-51 1.1E-55 385.7 15.0 147 122-269 30-176 (379)
14 KOG1376|consensus 100.0 8.3E-51 1.8E-55 369.0 7.8 214 1-275 2-215 (407)
15 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.4E-49 3E-54 349.8 12.7 208 2-277 1-208 (216)
16 cd06059 Tubulin The tubulin su 100.0 9.2E-45 2E-49 343.9 15.2 152 125-276 23-174 (382)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.9E-41 4E-46 315.3 14.2 151 125-276 23-173 (328)
18 cd06060 misato Human Misato sh 100.0 3.3E-38 7.2E-43 305.1 16.9 212 1-265 1-228 (493)
19 smart00864 Tubulin Tubulin/Fts 100.0 2.7E-31 5.9E-36 229.6 11.1 150 119-275 9-163 (192)
20 KOG2530|consensus 100.0 6.6E-29 1.4E-33 231.2 11.5 229 1-264 2-283 (483)
21 KOG1375|consensus 99.9 2.6E-28 5.6E-33 222.9 5.8 148 111-278 14-161 (369)
22 cd02202 FtsZ_type2 FtsZ is a G 99.9 1.2E-23 2.5E-28 197.3 14.1 119 147-273 52-177 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.8 2.2E-19 4.8E-24 165.4 12.8 109 154-274 56-164 (303)
24 PF14881 Tubulin_3: Tubulin do 99.8 1.5E-19 3.3E-24 154.6 10.1 127 137-264 11-152 (180)
25 cd02201 FtsZ_type1 FtsZ is a G 99.7 4.5E-17 9.7E-22 150.3 11.7 109 154-274 56-164 (304)
26 TIGR00065 ftsZ cell division p 99.7 4E-17 8.6E-22 153.0 9.3 108 155-274 74-181 (349)
27 PRK13018 cell division protein 99.5 2.2E-14 4.8E-19 135.4 10.7 107 155-273 85-191 (378)
28 PRK09330 cell division protein 99.5 1.2E-14 2.7E-19 137.2 8.9 108 155-274 70-177 (384)
29 PF10644 Misat_Tub_SegII: Misa 99.5 5.6E-14 1.2E-18 111.9 6.1 75 1-112 1-79 (115)
30 KOG1374|consensus 98.7 6.1E-09 1.3E-13 96.5 3.7 64 73-140 49-125 (448)
31 PLN00221 tubulin alpha chain; 98.6 2.9E-08 6.2E-13 96.4 3.0 52 89-140 62-125 (450)
32 PTZ00335 tubulin alpha chain; 98.6 4.6E-08 9.9E-13 95.0 4.0 64 73-140 50-125 (448)
33 cd02188 gamma_tubulin Gamma-tu 98.4 7.8E-08 1.7E-12 92.9 2.2 29 111-139 90-122 (431)
34 COG0206 FtsZ Cell division GTP 98.4 1.5E-06 3.3E-11 81.0 10.4 101 166-273 74-174 (338)
35 PLN00222 tubulin gamma chain; 98.4 2E-07 4.3E-12 90.6 2.7 30 111-140 92-125 (454)
36 PLN00220 tubulin beta chain; P 98.3 3E-07 6.5E-12 89.4 2.8 30 111-140 91-123 (447)
37 cd02186 alpha_tubulin The tubu 98.3 4E-07 8.7E-12 88.1 2.6 49 92-140 64-124 (434)
38 cd02189 delta_tubulin The tubu 98.1 9.2E-07 2E-11 85.9 2.2 30 111-140 87-119 (446)
39 KOG1376|consensus 97.9 4E-06 8.6E-11 77.8 1.4 89 23-140 24-124 (407)
40 PTZ00387 epsilon tubulin; Prov 97.8 6.3E-06 1.4E-10 80.4 1.3 54 86-139 58-123 (465)
41 COG5023 Tubulin [Cytoskeleton] 96.9 0.0007 1.5E-08 63.4 2.9 61 34-128 7-67 (443)
42 PF13809 Tubulin_2: Tubulin li 96.3 0.018 3.8E-07 54.3 8.5 102 152-253 99-217 (345)
43 KOG1375|consensus 94.2 0.028 6E-07 52.7 2.0 55 75-129 10-70 (369)
44 PF06908 DUF1273: Protein of u 72.8 9.3 0.0002 32.6 5.6 57 173-236 27-83 (177)
45 PF12953 DUF3842: Domain of un 58.5 9.5 0.0002 30.9 2.6 28 202-229 6-34 (131)
46 cd00741 Lipase Lipase. Lipase 55.6 19 0.00042 29.0 4.2 57 164-224 1-57 (153)
47 PF00091 Tubulin: Tubulin/FtsZ 52.1 14 0.0003 32.2 2.9 143 35-224 6-153 (216)
48 smart00864 Tubulin Tubulin/Fts 51.8 5.6 0.00012 34.0 0.4 42 86-127 8-58 (192)
49 PRK09461 ansA cytoplasmic aspa 51.3 34 0.00073 32.2 5.6 89 171-266 65-154 (335)
50 PRK14484 phosphotransferase ma 47.5 15 0.00032 29.5 2.2 29 175-205 42-70 (124)
51 COG0031 CysK Cysteine synthase 46.5 31 0.00067 32.0 4.4 102 158-276 147-255 (300)
52 PF03610 EIIA-man: PTS system 46.4 21 0.00045 27.7 2.9 31 175-205 41-71 (116)
53 PF00710 Asparaginase: Asparag 45.4 63 0.0014 29.9 6.3 89 171-266 56-145 (313)
54 cd00411 Asparaginase Asparagin 42.9 63 0.0014 30.1 6.0 88 171-266 62-152 (323)
55 TIGR02153 gatD_arch glutamyl-t 41.9 73 0.0016 30.9 6.3 89 171-266 122-211 (404)
56 cd00519 Lipase_3 Lipase (class 41.1 40 0.00086 29.2 4.1 56 162-221 99-154 (229)
57 PLN02847 triacylglycerol lipas 41.1 32 0.00069 35.0 3.8 62 164-229 224-287 (633)
58 COG0836 {ManC} Mannose-1-phosp 40.3 31 0.00067 32.3 3.4 65 200-278 7-71 (333)
59 TIGR00824 EIIA-man PTS system, 39.2 45 0.00097 26.1 3.8 34 175-208 42-75 (116)
60 cd00006 PTS_IIA_man PTS_IIA, P 38.4 41 0.00088 26.4 3.4 31 175-205 41-71 (122)
61 smart00870 Asparaginase Aspara 36.8 98 0.0021 28.8 6.2 91 171-266 59-152 (323)
62 TIGR00519 asnASE_I L-asparagin 36.4 68 0.0015 30.1 5.1 71 171-248 61-132 (336)
63 PRK13660 hypothetical protein; 36.1 1.4E+02 0.003 25.6 6.5 53 175-235 29-82 (182)
64 PLN02408 phospholipase A1 34.6 77 0.0017 30.3 5.2 71 172-246 179-252 (365)
65 PF05728 UPF0227: Uncharacteri 34.1 45 0.00096 28.6 3.2 50 175-232 43-93 (187)
66 cd02187 beta_tubulin The tubul 33.3 61 0.0013 31.4 4.4 141 35-223 7-157 (425)
67 PRK04183 glutamyl-tRNA(Gln) am 33.3 1.1E+02 0.0024 29.8 6.1 88 171-266 135-223 (419)
68 PF01764 Lipase_3: Lipase (cla 32.8 35 0.00077 26.6 2.3 54 164-222 36-91 (140)
69 PF03283 PAE: Pectinacetyleste 32.7 1.3E+02 0.0027 28.7 6.3 84 166-254 132-222 (361)
70 PLN03013 cysteine synthase 31.1 1E+02 0.0023 30.1 5.5 78 196-276 284-367 (429)
71 COG0572 Udk Uridine kinase [Nu 29.3 70 0.0015 28.3 3.7 27 196-223 9-35 (218)
72 PF13508 Acetyltransf_7: Acety 28.4 70 0.0015 22.4 3.0 22 205-226 40-61 (79)
73 cd06059 Tubulin The tubulin su 27.6 12 0.00027 35.6 -1.5 18 2-19 1-18 (382)
74 COG4053 Uncharacterized protei 27.3 87 0.0019 27.3 3.7 55 175-232 69-123 (244)
75 PF02879 PGM_PMM_II: Phosphogl 27.0 36 0.00079 25.6 1.3 27 192-218 20-46 (104)
76 cd03089 PMM_PGM The phosphoman 25.7 1.9E+02 0.0041 27.9 6.4 27 192-218 162-188 (443)
77 PRK11761 cysM cysteine synthas 24.6 1.1E+02 0.0024 27.9 4.4 98 161-277 148-248 (296)
78 COG4427 Uncharacterized protei 24.6 2.7E+02 0.0059 25.7 6.6 86 175-278 5-103 (350)
79 PF02353 CMAS: Mycolic acid cy 24.0 1.2E+02 0.0026 27.6 4.3 63 161-230 30-93 (273)
80 PLN02371 phosphoglucosamine mu 24.0 1.6E+02 0.0036 29.7 5.8 73 190-266 260-336 (583)
81 PF02456 Adeno_IVa2: Adenoviru 23.7 1E+02 0.0023 29.0 3.9 10 48-57 138-147 (369)
82 TIGR02364 dha_pts dihydroxyace 23.3 64 0.0014 25.8 2.2 28 175-203 42-70 (125)
83 PF01713 Smr: Smr domain; Int 22.2 2.2E+02 0.0047 20.4 4.7 52 175-229 9-66 (83)
84 COG2893 ManX Phosphotransferas 21.5 1.3E+02 0.0029 24.6 3.8 39 175-213 43-81 (143)
85 KOG1481|consensus 21.1 73 0.0016 29.6 2.3 58 160-233 193-250 (391)
86 COG1109 {ManB} Phosphomannomut 20.9 3.3E+02 0.0071 26.6 7.0 89 174-267 159-250 (464)
87 PRK04940 hypothetical protein; 20.6 1.3E+02 0.0028 25.8 3.6 30 205-234 66-96 (180)
88 KOG3010|consensus 20.6 65 0.0014 29.1 1.8 26 253-278 103-128 (261)
89 PF05127 Helicase_RecD: Helica 20.1 73 0.0016 27.2 2.0 60 191-250 114-176 (177)
90 PRK14318 glmM phosphoglucosami 20.1 3E+02 0.0066 26.6 6.6 39 177-217 161-199 (448)
91 cd01841 NnaC_like NnaC (CMP-Ne 20.0 1.2E+02 0.0026 24.5 3.3 38 212-249 80-123 (174)
92 smart00467 GS GS motif. Aa app 20.0 76 0.0016 19.0 1.5 14 201-215 11-24 (30)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=2e-75 Score=530.56 Aligned_cols=215 Identities=59% Similarity=1.025 Sum_probs=194.7
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||++||+++|+||||.++|.+.+.++. .++.+++||
T Consensus 2 REIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~------------------------------~~er~~vfF 51 (443)
T COG5023 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDE------------------------------GDERFDVFF 51 (443)
T ss_pred ceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCccc------------------------------cccccccee
Confidence 89999999999999999997777777776666665554332 245677767
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
+|.+.+|||||+|+||||| .||+.|+.++|+.+|+|+|++.++++|||
T Consensus 52 ~e~~~~k~vPRaI~vDLEP--------------------------------~vid~v~~g~y~~lf~Pen~i~gkegAgN 99 (443)
T COG5023 52 YEASDGKFVPRAILVDLEP--------------------------------GVIDQVRNGPYGSLFHPENIIFGKEGAGN 99 (443)
T ss_pred eecCCCccccceEEEecCc--------------------------------chHhhhccCccccccChhheeeccccccc
Confidence 7777777777777766654 77888999999999999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|+|++|+++.+.++|+|||++|.||.||||+++||++||||||+||+|+|+|++|||||.+.+|+|+|.++.+++|
T Consensus 100 nwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~V 179 (443)
T COG5023 100 NWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVV 179 (443)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
|||||++|++|+|+|++|++|++||+||++||.+.+|
T Consensus 180 VePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~ 216 (443)
T COG5023 180 VEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLR 216 (443)
T ss_pred ecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998876
No 2
>KOG1374|consensus
Probab=100.00 E-value=1.6e-61 Score=440.36 Aligned_cols=214 Identities=38% Similarity=0.678 Sum_probs=183.1
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||..||.++|+||||.++|.....++.+ .+.-..
T Consensus 3 ~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~------------------------------~drKdv-- 50 (448)
T KOG1374|consen 3 REIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEG------------------------------ADRKDV-- 50 (448)
T ss_pred ceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhC------------------------------cccccc--
Confidence 799999999999999999955555555544444432222211 111222
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecc--cCc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK--EDA 158 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~--~~a 158 (280)
||.+..+++++|||+++|+||+||+.+.+.+|+++|+|+|+...+ .||
T Consensus 51 ------------------------------FFyqadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~~s~~ggGA 100 (448)
T KOG1374|consen 51 ------------------------------FFYQADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIFLSDHGGGA 100 (448)
T ss_pred ------------------------------ceeeccCCccccceeeeccchHHHhccccchhhcccCccceEEecCCCCc
Confidence 677777777777888888888999999999999999999998864 679
Q ss_pred ccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCC-CC
Q psy11081 159 ANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VS 237 (280)
Q Consensus 159 gnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~-~~ 237 (280)
|||||.||- .|+++.|+|+|.|+||+|.||+|.||+++||++||||||+||.++|+|+|+||||.+.+++|||... .+
T Consensus 101 GNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ss 179 (448)
T KOG1374|consen 101 GNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESS 179 (448)
T ss_pred ccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCcc
Confidence 999999965 5999999999999999999999999999999999999999999999999999999999999999873 57
Q ss_pred cchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 238 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 238 ~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
+++|+|||++|+|++|.+++|+++++||.||.+||...++
T Consensus 180 dVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~ 219 (448)
T KOG1374|consen 180 DVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLH 219 (448)
T ss_pred ceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987765
No 3
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.4e-61 Score=463.20 Aligned_cols=217 Identities=77% Similarity=1.275 Sum_probs=185.4
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||..||+++|+||+|+++|.+.++... ...+..+++||
T Consensus 2 ~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~----------------------------~~~~~~~~~fF 53 (450)
T PLN00221 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTV----------------------------GGGDDAFNTFF 53 (450)
T ss_pred CeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccc----------------------------cccchhhhhhe
Confidence 79999999999999999996666666666666654322110 00123445544
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
+|+.+ ++++||++++|+||++|+.++.++++++|+|++++.+++||||
T Consensus 54 ~e~~~--------------------------------~~~~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~gagN 101 (450)
T PLN00221 54 SETGA--------------------------------GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 101 (450)
T ss_pred eccCC--------------------------------cccccchhcCCCChhhhhhhccCccccccCccceeccCCCccc
Confidence 44444 4455555555566688888888888899999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++++|+|+|+|||+.+.+++|+|++..++++
T Consensus 102 nwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~v 181 (450)
T PLN00221 102 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAV 181 (450)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998778899
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|++++|.+++|++++|||+||+++|.++++
T Consensus 182 v~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~ 218 (450)
T PLN00221 182 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLD 218 (450)
T ss_pred hhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998864
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.9e-60 Score=455.64 Aligned_cols=217 Identities=76% Similarity=1.235 Sum_probs=185.2
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||..||+++|+||+++++|.+.++.. ....+..+++
T Consensus 2 ~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~----------------------------~~~~~~~~~~-- 51 (448)
T PTZ00335 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKN----------------------------IGVEDDAFNT-- 51 (448)
T ss_pred CcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCc----------------------------ccccchhhcc--
Confidence 7999999999999999999666666666666554322110 0001234455
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
||.|..+++++||++++|+||++|+.++.++++++|+|++++.+++||||
T Consensus 52 ------------------------------fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~gagn 101 (448)
T PTZ00335 52 ------------------------------FFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 101 (448)
T ss_pred ------------------------------eeEEcCCCccccccccccCCcchhhhcccCccccccCchheeecCCCCCC
Confidence 44444455555555556666788888888888899999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|+|+|+||++.+++++|+|++..++++
T Consensus 102 nwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~ 181 (448)
T PTZ00335 102 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAV 181 (448)
T ss_pred cccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEEecCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|+|++|++++|++++|||+||+++|.++++
T Consensus 182 v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~ 218 (448)
T PTZ00335 182 VEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLD 218 (448)
T ss_pred eeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988754
No 5
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.7e-58 Score=442.36 Aligned_cols=214 Identities=39% Similarity=0.704 Sum_probs=180.6
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
||||+||+||||||||.+||+++|+||+++++|.+.+. ... .+..+++||
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~----------------------------~~~--~~~~~~~fF 50 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDF----------------------------ATD--GGDRKDVFF 50 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCC----------------------------ccc--cccccceeE
Confidence 79999999999999999996666666666555543211 000 123455655
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceeccc--Cc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DA 158 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~--~a 158 (280)
.|.++++|+||+| ++|+||++|+.++.++++++|+|++++.+++ ++
T Consensus 51 ~e~~~~~~~pRav--------------------------------~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~ga 98 (431)
T cd02188 51 YQADDEHYVPRAI--------------------------------LIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGA 98 (431)
T ss_pred EECCCCccCCcce--------------------------------eccCCcchhhhhhcCccccccCccceEeeccCCCc
Confidence 5555555555554 4555667788888888889999999999997 99
Q ss_pred ccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-C
Q psy11081 159 ANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-S 237 (280)
Q Consensus 159 gnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~ 237 (280)
||||++||+ .|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|||+.+++++|+|++.. +
T Consensus 99 gnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s 177 (431)
T cd02188 99 GNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESS 177 (431)
T ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCC
Confidence 999999955 69999999999999999999999999999999999999999999999999999999999999998764 5
Q ss_pred cchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 238 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 238 ~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
+++++|||++|++++|.+++|++++|||+||++||.++++
T Consensus 178 ~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~ 217 (431)
T cd02188 178 DVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLH 217 (431)
T ss_pred CccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999998865
No 6
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=4.1e-58 Score=442.45 Aligned_cols=215 Identities=43% Similarity=0.826 Sum_probs=183.2
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||..||+++|+||+++++|.+.+. ... ....+++||
T Consensus 2 ~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~----------------------------~~~--~~~~~~~~f 51 (447)
T PLN00220 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGD----------------------------SDL--QLERINVYY 51 (447)
T ss_pred CceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCC----------------------------ccc--cccccccee
Confidence 79999999999999999996666666666655543221 000 012345544
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
.|.++++|+||+| ++|+||++++.+..++++++|+|++++.+++||||
T Consensus 52 ~e~~~~~~~pRav--------------------------------~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gagn 99 (447)
T PLN00220 52 NEASGGRYVPRAV--------------------------------LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGN 99 (447)
T ss_pred ccCCCCcccceeE--------------------------------ecCCcHHHHHHHhcCccccccCccceEecccCCCC
Confidence 4555555555554 45555677778888888899999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|.++.++++|+||+++|+||++|||+++||++||||||+|+.++++|+|+||++.+++++|+|++..++++
T Consensus 100 nwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~ 179 (447)
T PLN00220 100 NWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179 (447)
T ss_pred ccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEECCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|+|++|.+++|++++|||+||+++|.++++
T Consensus 180 v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~ 216 (447)
T PLN00220 180 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK 216 (447)
T ss_pred cchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988754
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=5.9e-58 Score=439.66 Aligned_cols=217 Identities=82% Similarity=1.333 Sum_probs=184.1
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||||||||..||+++|+||+++++|.+.+... ....+..+++||
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~----------------------------~~~~~~~~~~ff 52 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKT----------------------------IGGGDDAFNTFF 52 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCcc----------------------------ccccccccceEE
Confidence 7999999999999999999666666666666665422100 000123455544
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
+|+.+++| +||++++|+||++|+.+..++++.+|+|++++.+++++||
T Consensus 53 ~e~~~~~~--------------------------------~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gn 100 (434)
T cd02186 53 SETGSGKH--------------------------------VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 100 (434)
T ss_pred EECCCCcC--------------------------------cccccccCCcHHHHHhhccCccccccCccceeecCCCCCc
Confidence 45544444 4555555556677888887778889999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|+|+|+||++.+++++|+|+...++++
T Consensus 101 nwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~ 180 (434)
T cd02186 101 NFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180 (434)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998767889
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|+|++|.+++|++++|||+||+++|.++++
T Consensus 181 v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~ 217 (434)
T cd02186 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLD 217 (434)
T ss_pred eeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988764
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.3e-57 Score=436.52 Aligned_cols=215 Identities=43% Similarity=0.813 Sum_probs=184.9
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
||||+||+||||||||.+||+++|+||+++++|.+.+. ... ....+++||
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~----------------------------~~~--~~~~~~~fF 50 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGD----------------------------SDL--QLERINVYF 50 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCC----------------------------ccc--cccccceeE
Confidence 79999999999999999996666666666665543211 110 123456666
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
+|.++++|+||+|+||++ |++++.++.++++.+|+|++++.+++++||
T Consensus 51 ~e~~~~~~~pRav~iD~e--------------------------------~~~i~~i~~~~~~~l~~~~~~~~~~~gagn 98 (425)
T cd02187 51 NEASGGKYVPRAILVDLE--------------------------------PGTMDSVRSGPFGQLFRPDNFVFGQSGAGN 98 (425)
T ss_pred EecCCCceeeeeeeccCC--------------------------------hhhhhhhhcCcccceecCcceeeccCCCCC
Confidence 666666666666666555 466667767777889999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|+|+|+|||+.+++++|+|++..++.+
T Consensus 99 nwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~ 178 (425)
T cd02187 99 NWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTV 178 (425)
T ss_pred ccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEecCCCcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998767899
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|+|++|.+++|++++|||+||+++|.++++
T Consensus 179 v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~ 215 (425)
T cd02187 179 VEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLK 215 (425)
T ss_pred eeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
No 9
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=9.5e-58 Score=439.27 Aligned_cols=215 Identities=44% Similarity=0.820 Sum_probs=183.3
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
||||+||+||||||||..||+++|+||+++++|.+.+ .... ....+++||
T Consensus 2 ~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~----------------------------~~~~--~~~~~~~ff 51 (445)
T PTZ00010 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQG----------------------------DSDL--QLERINVYY 51 (445)
T ss_pred CcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCC----------------------------CCcc--cccccceee
Confidence 7999999999999999999666666666555554321 1111 113455655
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
+|..+++|+||+|+||+ ||++++.++.++++.+|+|++++.+++++||
T Consensus 52 ~e~~~~~~~pRav~iD~--------------------------------e~~vi~~i~~~~~~~lf~~~~~~~~~~gagN 99 (445)
T PTZ00010 52 NEATGGRYVPRAVLMDL--------------------------------EPGTMDSVRAGPYGQLFRPDNFIFGQSGAGN 99 (445)
T ss_pred cccCCCceEEeeeeccC--------------------------------ChhhhhhhcccchhhhcCccceeecccCCcc
Confidence 55555565555555555 5566777777778889999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|+|+|+|||+.+++++|+|++..++.+
T Consensus 100 nwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~ 179 (445)
T PTZ00010 100 NWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTV 179 (445)
T ss_pred ccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|++++|.+++|++++|||+||++||.++++
T Consensus 180 v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~ 216 (445)
T PTZ00010 180 VEPYNATLSVHQLVENADESMCIDNEALYDICFRTLK 216 (445)
T ss_pred hhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998864
No 10
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.5e-57 Score=438.12 Aligned_cols=214 Identities=36% Similarity=0.662 Sum_probs=180.2
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
||||+||+||||||||..||+++|+||+++++|.+.+. ... .+..+++||
T Consensus 3 ~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~----------------------------~~~--~~~~~~~fF 52 (454)
T PLN00222 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDF----------------------------ATQ--GGDRKDVFF 52 (454)
T ss_pred ccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCc----------------------------ccc--cccccccee
Confidence 79999999999999999996666666666665543221 010 123455545
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceeccc--Cc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DA 158 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~--~a 158 (280)
.|.++++|+||+|+ +|+||++|+.++.++++++|+|++++.+++ ||
T Consensus 53 ~e~~~~~~~pRav~--------------------------------iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~ga 100 (454)
T PLN00222 53 YQADDEHYIPRALL--------------------------------IDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGA 100 (454)
T ss_pred EEcCCCcccceeee--------------------------------cCCCcchhhhhccCccccccCccceeecccCCCc
Confidence 55555555555554 555567788888888889999999999996 69
Q ss_pred ccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCC-CC
Q psy11081 159 ANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VS 237 (280)
Q Consensus 159 gnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~-~~ 237 (280)
|||||+||+ .|+++.++++|+||+++|.||++|||+++||++||||||+|+.++|+|+|+||++.+++++|+|++. .+
T Consensus 101 gnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~ 179 (454)
T PLN00222 101 GNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETS 179 (454)
T ss_pred ccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEecCCCcccC
Confidence 999999955 7999999999999999999999999999999999999999999999999999999999999999873 46
Q ss_pred cchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 238 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 238 ~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
+++++|||++|++++|.+++|++++|||+||++||.++++
T Consensus 180 ~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~ 219 (454)
T PLN00222 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLH 219 (454)
T ss_pred CceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999998864
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=4.9e-57 Score=435.07 Aligned_cols=214 Identities=30% Similarity=0.608 Sum_probs=181.6
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhC-CCCCCCCCCCCCCCCCCCCcccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHG-IQPDGQMPSDKTVGGGDDSFNTF 79 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~-i~~~~~~~~~~~~~~~~~~~~~~ 79 (280)
||||+||+||||||||..| |+++|+||+ |+++|.. +..+++|
T Consensus 2 ~EiI~iqvGQCGnQIG~~f----------------------------W~~l~~Eh~~i~~~g~~---------~~~~~~f 44 (465)
T PTZ00387 2 REIVTVQVGQCGNQLGHRF----------------------------WDVALKEHKKINANPQY---------DDARDSF 44 (465)
T ss_pred CcEEEEEcCchHHHHHHHH----------------------------HHHHHHHhCccCCCCcc---------cccccce
Confidence 7999999999999999999 555555555 4555432 2234554
Q ss_pred cccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCcc
Q psy11081 80 FSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA 159 (280)
Q Consensus 80 ~~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~ag 159 (280)
|.|.+.. ..+.+.++++||++++|+||++|+.++.++++++|+|++++.+++|||
T Consensus 45 F~~~~~~-------------------------~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~GaG 99 (465)
T PTZ00387 45 FENVSEN-------------------------VNRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAG 99 (465)
T ss_pred ecccccc-------------------------cccCCCccccCcccccCCCccHHHHhhcCCcccccCcccccccCCCCC
Confidence 4432110 000111236677777777788899998888899999999999999999
Q ss_pred cccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcc
Q psy11081 160 NNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 239 (280)
Q Consensus 160 nn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~ 239 (280)
|||++|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|+|+|+||++.+++++|+|+. .+++
T Consensus 100 Nnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~~~V~P~~-~~~~ 178 (465)
T PTZ00387 100 NNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPSA-VDDV 178 (465)
T ss_pred CCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCceeeeEecCCC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 4788
Q ss_pred hhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 240 VVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 240 ~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
+++|||++|++++|.+++|++++|||+||.+||.++++
T Consensus 179 vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~ 216 (465)
T PTZ00387 179 ITSPYNSFFALRELIEHADCVLPLDNDALANIADSALS 216 (465)
T ss_pred eeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcC
Confidence 99999999999999999999999999999999988753
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=3.6e-55 Score=421.71 Aligned_cols=208 Identities=29% Similarity=0.536 Sum_probs=175.1
Q ss_pred EEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccccc
Q psy11081 3 CISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSE 82 (280)
Q Consensus 3 iitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~e 82 (280)
|||||+||||||||.+||+++|+||+++++|.+ . . ....++.||.|
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~----------------------------~----~--~~~~~~~ff~e 47 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGY----------------------------K----Y--ERDAQERFFSE 47 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCc----------------------------c----c--cccccceeecc
Confidence 899999999999999995555555555444432 1 0 12344554445
Q ss_pred CCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeecccc--ccccCCccceecccCccc
Q psy11081 83 TGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTY--RQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 83 ~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~--~~lf~~~~~i~~~~~agn 160 (280)
..+++|+||+|+ +|+||++|+.++.+.+ .++|+|++++.+++|+||
T Consensus 48 ~~~~~~~pRav~--------------------------------iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~~gagn 95 (446)
T cd02189 48 KSDGQPIARSVL--------------------------------VDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGN 95 (446)
T ss_pred cCCCCcCCceee--------------------------------cCCCchHHHHhhcCCCCcccccCchheeecCCCCcc
Confidence 555555555554 5555677777776543 368999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|||+|||+.|+++.|+++|+|||++|+||+++||+++||++||||||+|++++|+|+|+||++.+++++|+|+. .++++
T Consensus 96 nwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~-~~~~~ 174 (446)
T cd02189 96 NWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYT-TGEVI 174 (446)
T ss_pred chhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccCCC-CCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 47899
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++|||++|+|++|.+++|++++|||+||.++|.++++
T Consensus 175 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~ 211 (446)
T cd02189 175 VQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRN 211 (446)
T ss_pred hhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998753
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=4.9e-51 Score=385.73 Aligned_cols=147 Identities=37% Similarity=0.741 Sum_probs=138.5
Q ss_pred cccccccCCCccceeeeccccccccCCccceecccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecC
Q psy11081 122 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFG 201 (280)
Q Consensus 122 pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~ 201 (280)
||++++|+||++|+.++.++++++|+|++++.+++|+||||++|||..|+++.|+++|+||+++|+||++|||+++||++
T Consensus 30 pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~ 109 (379)
T cd02190 30 ARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLG 109 (379)
T ss_pred CcceeccCChhHHHHHhcCccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecC
Confidence 45555556668888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHH
Q psy11081 202 GGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIK 269 (280)
Q Consensus 202 GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~ 269 (280)
||||||+|+.++|+|+|+||++.+++++|+|++. ++++++|||++|+|++|.+++|++++|||++|.
T Consensus 110 GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~ 176 (379)
T cd02190 110 GGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV 176 (379)
T ss_pred CCcchhHHHHHHHHHHHhcCccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH
Confidence 9999999999999999999999999999999986 788999999999999999999999999999997
No 14
>KOG1376|consensus
Probab=100.00 E-value=8.3e-51 Score=369.01 Aligned_cols=214 Identities=90% Similarity=1.400 Sum_probs=185.6
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
||||+||+||+|.|||+.| |+++|.||+|+|+|+++.+...+..+..|+.||
T Consensus 2 ~e~i~ih~gqag~qi~naC----------------------------wel~clEhgi~~~g~~p~~~~~~~~~~~~~tff 53 (407)
T KOG1376|consen 2 REIISIHVGQAGVQIGNAC----------------------------WELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFF 53 (407)
T ss_pred Ccceeeeeccccccccchh----------------------------HHHHHHHhcCccCCcCCCCccccccCcccceee
Confidence 7999999999999999999 555555555555555443222222344666644
Q ss_pred ccCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCccc
Q psy11081 81 SETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160 (280)
Q Consensus 81 ~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agn 160 (280)
++...++++||+++|||||. ||+++.+.|+.+|||+++++||+.++|
T Consensus 54 --------------------------------~~t~~~k~~pr~~fVDlEPt-idevrtG~y~~lfHPeqlitGkedAan 100 (407)
T KOG1376|consen 54 --------------------------------SETGAGKHVPRAVFVDLEPT-IDEVRTGTYRQLFHPEQLITGKEDAAN 100 (407)
T ss_pred --------------------------------cccccccccceeEEEeccCc-cchhcccchhhccCchhccCcchHhhh
Confidence 44455555555555566667 889999999999999999999999999
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcch
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~ 240 (280)
|+|+|+|++|+++++..+++||+.++.|..+|||.++|+++||||||+++.++|+|..+|+||..+.++++|+++.+..+
T Consensus 101 nyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt~v 180 (407)
T KOG1376|consen 101 NYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 180 (407)
T ss_pred hHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhccccccccccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHH
Q psy11081 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQ 275 (280)
Q Consensus 241 v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~ 275 (280)
++|||++|+.+...+++|+++++||+|+++||.+.
T Consensus 181 vePynsiltth~tle~sD~sf~vdnea~Ydicr~~ 215 (407)
T KOG1376|consen 181 VEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRN 215 (407)
T ss_pred cCCccccccceeecccCcceeecCchhhcchhhhc
Confidence 99999999999999999999999999999999953
No 15
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.4e-49 Score=349.76 Aligned_cols=208 Identities=46% Similarity=0.797 Sum_probs=178.1
Q ss_pred eEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccccc
Q psy11081 2 ECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFS 81 (280)
Q Consensus 2 Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
|||+||+||||||||.+||+++|+||+++++ .... ..+...+.||+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----------------------------~~~~------~~~~~~~~~f~ 46 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----------------------------SKSQ------YNRENINSFFS 46 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----------------------------SSSS------TTSSTGCCTEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----------------------------cccc------cccccccceee
Confidence 8999999999999999996666555555555 1100 12345666666
Q ss_pred cCCCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCcccc
Q psy11081 82 ETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANN 161 (280)
Q Consensus 82 e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn 161 (280)
+..+++|+||+|+||+ ||++++.++..+.+.+|.+++++.+++++++|
T Consensus 47 ~~~~~~~~~r~i~iDt--------------------------------d~~~l~~i~~~~~~~l~~~~~~~~~~~g~g~n 94 (216)
T PF00091_consen 47 ESSSGKYVPRAIAIDT--------------------------------DPKVLDEIRASPKRSLFDPNNLISGQEGSGNN 94 (216)
T ss_dssp ESTTTBESEEEEEEES--------------------------------SHHHHHHHHTSEETTESCGGGEEETSSTSTTS
T ss_pred eccccccccccccccc--------------------------------cccccccccccccccccccccccccccccccc
Confidence 6666666666666555 45677777777777899999999999999999
Q ss_pred cCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchh
Q psy11081 162 YARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 241 (280)
Q Consensus 162 ~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v 241 (280)
|++||+..|.++.++++|+||+++|+||.+++|+++||++||||||+++.+++.|+++||++.+++++|+|+. .+.++
T Consensus 95 ~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~--~e~~~ 172 (216)
T PF00091_consen 95 WAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFS--SEGVV 172 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CG--GGSHH
T ss_pred ccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccccccc--ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999994 38899
Q ss_pred hhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 242 EPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 242 ~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
++||++++|+.|.+++|++++|||++|.++|.++++
T Consensus 173 ~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~ 208 (216)
T PF00091_consen 173 EPYNALLSLSELQEYADSVILFDNDALYKICKNQLG 208 (216)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSS
T ss_pred ccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCC
Confidence 999999999999999999999999999999998765
No 16
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=9.2e-45 Score=343.93 Aligned_cols=152 Identities=53% Similarity=0.872 Sum_probs=145.0
Q ss_pred ccccCCCccceeeeccccccccCCccceecccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCC
Q psy11081 125 VFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGT 204 (280)
Q Consensus 125 ~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGt 204 (280)
+++|+||++++.+...+.+.+|+|++++.+++++||||++||+..|+++.|+++|+||+++|+||.+|||+++||++|||
T Consensus 23 i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGT 102 (382)
T cd06059 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGT 102 (382)
T ss_pred HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCc
Confidence 45788889999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHH
Q psy11081 205 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQI 276 (280)
Q Consensus 205 GSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~ 276 (280)
|||+|+.++|+|+|+|||+.+++++|+|+...+++++++||++|++++|.+++|+++++||++|.++|++++
T Consensus 103 GSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~ 174 (382)
T cd06059 103 GSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQL 174 (382)
T ss_pred chhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhc
Confidence 999999999999999999999999999998766689999999999999999999999999999999998863
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.9e-41 Score=315.30 Aligned_cols=151 Identities=50% Similarity=0.797 Sum_probs=141.0
Q ss_pred ccccCCCccceeeeccccccccCCccceecccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCC
Q psy11081 125 VFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGT 204 (280)
Q Consensus 125 ~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGt 204 (280)
+++|+|+++++.+...+...+|++.+.+.+++++||||++||+..++++.|+++|+||+++|+||++|||+++||++|||
T Consensus 23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGT 102 (328)
T cd00286 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGT 102 (328)
T ss_pred heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCc
Confidence 34677778888887777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHH
Q psy11081 205 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQI 276 (280)
Q Consensus 205 GSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~ 276 (280)
|||+++.++|+|+|+||++.+++++|+|+...+ .++++||++|++++|.+++|+++++||++|.++|++.+
T Consensus 103 GsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~ 173 (328)
T cd00286 103 GSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPL 173 (328)
T ss_pred cccHHHHHHHHHHHHcCccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhc
Confidence 999999999999999999999999999998643 69999999999999999999999999999999998854
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=3.3e-38 Score=305.11 Aligned_cols=212 Identities=23% Similarity=0.340 Sum_probs=164.3
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+||++|+||+|| ||.+...+.+.+++... ....+++|
T Consensus 1 rEIiTlq~G~~aN~vgtHf----------------------------wN~Qe~~~~y~~~~~~~--------~~~~dvl~ 44 (493)
T cd06060 1 REVLTLQLGHYANFVGTHW----------------------------WNLQEANFGYDPDSPAS--------ELDHDVLY 44 (493)
T ss_pred CceEEEeccCccccHhhhh----------------------------hhhhhhhcCCCCCCccc--------cCCCceee
Confidence 8999999999999999999 99999999888776322 23455566
Q ss_pred ccC----CCCccccceeeecCCccccCCCCccccccccCCCCccccccccccCCCccceeeeccccccccCCccceeccc
Q psy11081 81 SET----GSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE 156 (280)
Q Consensus 81 ~e~----~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~ 156 (280)
|++ +..+|+||+|++|||.+ +++.+.++.+ + ..+++..+ +.|.+..+-.|||++++.-.+
T Consensus 45 r~g~~~~g~~tytPR~l~~Dlkg~-~gsl~~~~~l----------~---~~~l~~~v--~~WSDy~r~~yhPrS~~~L~~ 108 (493)
T cd06060 45 REGRTRQGQVTYTPRLLLLDLKGT-LGHLPEEGSL----------K---VYNLEASV--NVWSDYLYARLHPRSINVINQ 108 (493)
T ss_pred eccccCCCceeEcCcEEEEecCCc-ccccccccCc----------C---Ccccccch--hhhhhcceeeeCCCceeeccc
Confidence 764 35799999999999953 3333322211 0 01222221 346666777899999977643
Q ss_pred -----CcccccCccccc---chhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeE
Q psy11081 157 -----DAANNYARGHYT---IGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF 228 (280)
Q Consensus 157 -----~agnn~a~G~y~---~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~ 228 (280)
+.+++|+.|+-. .+.+..|+++|+||+++|+||.+||||+++|++||| ||+|+.++|+|+|||||+.++++
T Consensus 109 ~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~ 187 (493)
T cd06060 109 YNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFP 187 (493)
T ss_pred hhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEE
Confidence 344455554322 234567899999999999999999999999999999 89999999999999999999999
Q ss_pred EEecCCCC----CcchhhhhhhHHhHHHHhhcCCEEEEech
Q psy11081 229 AIYPAPQV----STAVVEPYNSILTTHTTLEHSDCAFMVDN 265 (280)
Q Consensus 229 ~v~P~~~~----~~~~v~~yN~~lsl~~l~e~~d~~~~~dN 265 (280)
++.|.+.. .+.++++||++|++++|.+++|+++++.-
T Consensus 188 ~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~ 228 (493)
T cd06060 188 GLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSL 228 (493)
T ss_pred EeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99997632 25689999999999999999999999873
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.97 E-value=2.7e-31 Score=229.59 Aligned_cols=150 Identities=37% Similarity=0.557 Sum_probs=139.1
Q ss_pred ccccccccccCCCccceeeeccccccccCCccceecccCcccccCccccc-----chhHHHHHHHHHHhhhhccccCCcc
Q psy11081 119 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT-----IGKEIVDVVLDRIRKLSDQCTGLQG 193 (280)
Q Consensus 119 ~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~-----~g~~~~e~~~d~iR~~~E~cd~lqg 193 (280)
...||++++|++|++++.+..++.+..|++.+.+..+.++||||++|||+ .|+++.++++|+||+++|+| ++
T Consensus 9 ~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~le~~---d~ 85 (192)
T smart00864 9 GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREELEGA---DG 85 (192)
T ss_pred CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHHhcCC---CE
Confidence 66788888888888888888788888999999999999999999999998 89999999999999999999 99
Q ss_pred eeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHH
Q psy11081 194 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEIL 273 (280)
Q Consensus 194 f~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~ 273 (280)
|+++||++||||||+++.+++.++ +||++. ++++++|+. .+.++++||+++++++|.+++|++++|||++|.++|.
T Consensus 86 ~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~ 161 (192)
T smart00864 86 VFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPFV--FEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICG 161 (192)
T ss_pred EEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeEe--ecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHh
Confidence 999999999999999999999999 999877 999999943 6789999999999999999999999999999999997
Q ss_pred HH
Q psy11081 274 LQ 275 (280)
Q Consensus 274 ~~ 275 (280)
++
T Consensus 162 ~~ 163 (192)
T smart00864 162 RN 163 (192)
T ss_pred cc
Confidence 53
No 20
>KOG2530|consensus
Probab=99.96 E-value=6.6e-29 Score=231.25 Aligned_cols=229 Identities=22% Similarity=0.359 Sum_probs=155.5
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||+|||||+.+|++|+|| ||++....+..+|...++.... .+ ++++
T Consensus 2 rEilTiq~g~~AnfvgtHf----------------------------wN~Qea~l~~~~d~~~~~~~~~--~n---dvly 48 (483)
T KOG2530|consen 2 REILTIQVGHFANFVGTHF----------------------------WNQQEAYLGLATDSEEPPGELC--PN---DVLY 48 (483)
T ss_pred ceEEEEEeeccccchhhhh----------------------------cchhhHhhccCCcccCChhhcC--cc---hhhh
Confidence 8999999999999999999 9999999999887654433221 11 4555
Q ss_pred ccCC----CCccccceeeecCCccccCCCCcccccccc--CCCCcccc----------c--c-ccccCCC--ccc-----
Q psy11081 81 SETG----SGKHVPRAVFVDLEPTVVGGDDSFNTFFSE--TGSGKHVP----------R--A-VFVDLEP--TVV----- 134 (280)
Q Consensus 81 ~e~~----~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e--~~~g~~~p----------R--a-~~vDlep--~vi----- 134 (280)
+... ..+|+||++++||+-...-..... ..|++ .+++..|+ | . .+-++.+ .++
T Consensus 49 r~g~~~~~~~tytPRl~l~Dl~g~~g~~~~~~-~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~ 127 (483)
T KOG2530|consen 49 RTGRTDHGQITYTPRLLLVDLKGELGTLKYQG-ELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNA 127 (483)
T ss_pred hccccccCceeeccceeEEecCccccccccch-hhccchhcccccccccccceeccccccCChHHhhhccccCcccccch
Confidence 5543 359999999999994332111000 01111 01111222 1 0 0001000 000
Q ss_pred ------------e--eeeccccccccCCccceecccCcccccCcccccchhHHH------HHHHHHHhhhhccccCCcce
Q psy11081 135 ------------D--EVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV------DVVLDRIRKLSDQCTGLQGF 194 (280)
Q Consensus 135 ------------~--~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~~g~~~~------e~~~d~iR~~~E~cd~lqgf 194 (280)
. +.+.+-.+..|||+++...+..-.|--|.+.|..|.+++ +++.|+||.++|+||.+|||
T Consensus 128 ~~i~~e~~~~~~~sv~~WsDFlr~~yHp~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGF 207 (483)
T KOG2530|consen 128 EEIEYESDYSLLASVPSWSDFLRNHYHPRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGF 207 (483)
T ss_pred hhhccccccccccccchHHHHHHhhcCccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccce
Confidence 0 112223466799998876554333333355566666544 77899999999999999999
Q ss_pred eeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-Cc---chhh---hhhhHHhHHHHhhcCCEEEEec
Q psy11081 195 LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-ST---AVVE---PYNSILTTHTTLEHSDCAFMVD 264 (280)
Q Consensus 195 ~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~---~~v~---~yN~~lsl~~l~e~~d~~~~~d 264 (280)
+++.++.+|+| |+++.++|.|+|||+++.+.++...|.+.. +. .+-. ..|.+|++++|.++|++.+++-
T Consensus 208 q~l~Did~Gfg-G~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~ 283 (483)
T KOG2530|consen 208 QLLSDIDDGFG-GFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLS 283 (483)
T ss_pred EEEEecCCCch-hHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccc
Confidence 99999999977 999999999999999999999999885532 11 1222 5689999999999999999864
No 21
>KOG1375|consensus
Probab=99.95 E-value=2.6e-28 Score=222.93 Aligned_cols=148 Identities=44% Similarity=0.845 Sum_probs=128.5
Q ss_pred ccccCCCCccccccccccCCCccceeeeccccccccCCccceecccCcccccCcccccchhHHHHHHHHHHhhhhccccC
Q psy11081 111 FFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTG 190 (280)
Q Consensus 111 ~f~e~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~~~~~i~~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~ 190 (280)
+|.+...++++||++++||+|.+++.|+.+++..+|+|++ ++++ +|+|+.|.++.|. .||+
T Consensus 14 ~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----------~~dc 74 (369)
T KOG1375|consen 14 YYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----------SCDC 74 (369)
T ss_pred eecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc----------ccch
Confidence 3334444444455555555556777888899999999999 4443 8999999988776 8999
Q ss_pred CcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHH
Q psy11081 191 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270 (280)
Q Consensus 191 lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~ 270 (280)
+||||++||++||||||++++++..++++||.+++.+++++|++. ++.+++|||+.|++++|++++|.++++||+||++
T Consensus 75 lqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~d 153 (369)
T KOG1375|consen 75 LQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYD 153 (369)
T ss_pred hhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy11081 271 EILLQILQ 278 (280)
Q Consensus 271 i~~~~~~~ 278 (280)
||.+-.|-
T Consensus 154 ic~~~lkl 161 (369)
T KOG1375|consen 154 ICFRTLKL 161 (369)
T ss_pred HHhhhhcc
Confidence 99998763
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=1.2e-23 Score=197.25 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=106.2
Q ss_pred CCccceeccc-----CcccccCcccccchhHHHHHHHHHHhhhhccccC--CcceeeEeecCCCCCCChhHHHHHHhhhh
Q psy11081 147 HPEQLITGKE-----DAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTG--LQGFLIFHSFGGGTGSGFTSLLMERLSVD 219 (280)
Q Consensus 147 ~~~~~i~~~~-----~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~--lqgf~i~~s~~GGtGSG~~s~lle~L~de 219 (280)
.|+.++.+++ ++|+||. .|++..++..|.||+.+|.|+. +++|+++++++||||||+++.+++.++++
T Consensus 52 ~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 52 AEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred CCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 4566666664 5666654 5699999999999999999997 99999999999999999999999999999
Q ss_pred hCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHH
Q psy11081 220 YGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEIL 273 (280)
Q Consensus 220 Y~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~ 273 (280)
|+ +.+++++++|+.. +..+++||+++++++|.+++|++++|||++|.++|.
T Consensus 127 ~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~ 177 (349)
T cd02202 127 YE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGE 177 (349)
T ss_pred CC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhcc
Confidence 98 8899999999984 458999999999999999999999999999998764
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.81 E-value=2.2e-19 Score=165.39 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=97.9
Q ss_pred cccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecC
Q psy11081 154 GKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA 233 (280)
Q Consensus 154 ~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~ 233 (280)
...|+|+||..| ++..+++.++||+.+|.||. |+++++++||||||+++.+++.+++.|+ ++++|+|.
T Consensus 56 ~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~ 123 (303)
T cd02191 56 KGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTL 123 (303)
T ss_pred cCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeC
Confidence 345789999765 78889999999999999994 9999999999999999999999999995 56777777
Q ss_pred CCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHH
Q psy11081 234 PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILL 274 (280)
Q Consensus 234 ~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~ 274 (280)
|...+..+++||+.+++++|.+++|++++|||++|.++|.+
T Consensus 124 Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~ 164 (303)
T cd02191 124 PFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK 164 (303)
T ss_pred CcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc
Confidence 76677899999999999999999999999999999999874
No 24
>PF14881 Tubulin_3: Tubulin domain
Probab=99.80 E-value=1.5e-19 Score=154.55 Aligned_cols=127 Identities=24% Similarity=0.381 Sum_probs=97.9
Q ss_pred eeccccccccCCccceecccCccccc--CcccccchhHHHH------HHHHH-HhhhhccccCCcceeeEeecCCCCCCC
Q psy11081 137 VRTGTYRQLFHPEQLITGKEDAANNY--ARGHYTIGKEIVD------VVLDR-IRKLSDQCTGLQGFLIFHSFGGGTGSG 207 (280)
Q Consensus 137 I~~~~~~~lf~~~~~i~~~~~agnn~--a~G~y~~g~~~~e------~~~d~-iR~~~E~cd~lqgf~i~~s~~GGtGSG 207 (280)
.+.+..+-+|||++++..++..-++. ...-|..|.+.++ +++|+ ||.++|+||.+||||++.++.+|+| |
T Consensus 11 yWSDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-G 89 (180)
T PF14881_consen 11 YWSDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-G 89 (180)
T ss_pred ECCCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-h
Confidence 45566667799999888776433333 2334677776654 45665 9999999999999999999999988 9
Q ss_pred hhHHHHHHhhhhhCCCcc-eeEEEecCCCCCc-----chhhhhhhHHhHHHHhhcCCEEEEec
Q psy11081 208 FTSLLMERLSVDYGKKSK-LEFAIYPAPQVST-----AVVEPYNSILTTHTTLEHSDCAFMVD 264 (280)
Q Consensus 208 ~~s~lle~L~deY~k~~i-~~~~v~P~~~~~~-----~~v~~yN~~lsl~~l~e~~d~~~~~d 264 (280)
+++.++|+|+|||||+.+ +.+.+.+...... ......|.++++..|.++++++||+.
T Consensus 90 fas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~ 152 (180)
T PF14881_consen 90 FASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLS 152 (180)
T ss_pred HHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecC
Confidence 999999999999999996 6665544332111 23456899999999999999999987
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.71 E-value=4.5e-17 Score=150.33 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=90.6
Q ss_pred cccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecC
Q psy11081 154 GKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA 233 (280)
Q Consensus 154 ~~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~ 233 (280)
...|+|+||+.| ++..++..|+||+.+|.||.+ +++++++||||||+++.+.+ +..+|+. ++++++|.
T Consensus 56 ~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~-~a~e~g~---~~~~vvt~ 123 (304)
T cd02201 56 RGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAK-IAKEMGA---LTVAVVTK 123 (304)
T ss_pred CCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHH-HHHHcCC---CEEEEEeC
Confidence 445788998866 677899999999999999985 99999999999999888665 5556753 44555444
Q ss_pred CCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHH
Q psy11081 234 PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILL 274 (280)
Q Consensus 234 ~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~ 274 (280)
|...+..+++||+.++++.|.+++|++++|||++|.++|.+
T Consensus 124 Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~ 164 (304)
T cd02201 124 PFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDK 164 (304)
T ss_pred CccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhcc
Confidence 44467789999999999999999999999999999999865
No 26
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.70 E-value=4e-17 Score=152.97 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=90.2
Q ss_pred ccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCC
Q psy11081 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 234 (280)
Q Consensus 155 ~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~ 234 (280)
..|+|++|+. |++..++.+|+||+.+|.||.+ +++++++||||||+++.+. ++..+|+ +++++++|.|
T Consensus 74 G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia-~~ake~~---~l~vaivt~P 141 (349)
T TIGR00065 74 GLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVA-KIAKELG---ALTVAVVTKP 141 (349)
T ss_pred CCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHH-HHHHHcC---CCEEEEEeCC
Confidence 3478888885 5899999999999999999985 8999999999999988554 5555664 4455555544
Q ss_pred CCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHH
Q psy11081 235 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILL 274 (280)
Q Consensus 235 ~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~ 274 (280)
...+..+++||+.++++.|.+++|++++|||++|.++|.+
T Consensus 142 f~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~ 181 (349)
T TIGR00065 142 FKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN 181 (349)
T ss_pred ccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC
Confidence 4467799999999999999999999999999999999864
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.55 E-value=2.2e-14 Score=135.38 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=92.3
Q ss_pred ccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCC
Q psy11081 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 234 (280)
Q Consensus 155 ~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~ 234 (280)
..|+|++|..| ++..++..|.||+.+|.||. |+++++++||||||+++.+++.+++ |+ ....++.+.|+.
T Consensus 85 G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~ 154 (378)
T PRK13018 85 GLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK 154 (378)
T ss_pred CCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc
Confidence 35678887765 67778899999999999997 9999999999999999999999986 54 455677788876
Q ss_pred CCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHH
Q psy11081 235 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEIL 273 (280)
Q Consensus 235 ~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~ 273 (280)
.+....+.|+.++++.|.+++|++++|||++|.++|+
T Consensus 155 --~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~~ 191 (378)
T PRK13018 155 --FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIVP 191 (378)
T ss_pred --cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHHh
Confidence 4557789999999999999999999999999999983
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.55 E-value=1.2e-14 Score=137.21 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=94.1
Q ss_pred ccCcccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCC
Q psy11081 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 234 (280)
Q Consensus 155 ~~~agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~ 234 (280)
..|+|++|. .|++..++..+.||+.++.||.+ +++++++||||||.++ ++.++..+|+ +++++|+|.|
T Consensus 70 GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g---~ltvaVvt~P 137 (384)
T PRK09330 70 GLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG---ILTVAVVTKP 137 (384)
T ss_pred cCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC---CcEEEEEecC
Confidence 357888887 45889999999999999999877 8899999999999999 6777778886 6677777766
Q ss_pred CCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHH
Q psy11081 235 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILL 274 (280)
Q Consensus 235 ~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~ 274 (280)
...+...++||+.++++.|.+++|+++++||++|.++|.+
T Consensus 138 F~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~ 177 (384)
T PRK09330 138 FSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDK 177 (384)
T ss_pred ccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccC
Confidence 6678889999999999999999999999999999998854
No 29
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.48 E-value=5.6e-14 Score=111.90 Aligned_cols=75 Identities=21% Similarity=0.425 Sum_probs=53.7
Q ss_pred CeEEEEecCchhhHHHHHhHHHHhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCccccc
Q psy11081 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF 80 (280)
Q Consensus 1 ~Eiitlq~Gq~gn~ig~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
|||||||+|+.+|+||+|| ||++.......++... ..+..+++|
T Consensus 1 ~EIiTlq~G~~aN~vgtHf----------------------------wN~Qe~~~~y~~~~~~--------~~i~~dvlf 44 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHF----------------------------WNIQESYLPYDPDEKP--------SEIDHDVLF 44 (115)
T ss_pred CcEEEEEcccccCcHHHhh----------------------------hhhhhcccccCccccC--------cccCCceEE
Confidence 8999999999999999999 9987766644443321 134566777
Q ss_pred ccC----CCCccccceeeecCCccccCCCCcccccc
Q psy11081 81 SET----GSGKHVPRAVFVDLEPTVVGGDDSFNTFF 112 (280)
Q Consensus 81 ~e~----~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f 112 (280)
|++ +..+|+||+|++|++- .+++.+.++..+
T Consensus 45 R~g~~~~g~~TYtPRlL~~Dlkg-~lGsL~~~g~ly 79 (115)
T PF10644_consen 45 REGITLSGTVTYTPRLLLFDLKG-GLGSLRKYGYLY 79 (115)
T ss_pred ecccCcCCCeeECCcEEEEecCC-CcCccccccccc
Confidence 764 4469999999999993 344444443333
No 30
>KOG1374|consensus
Probab=98.74 E-value=6.1e-09 Score=96.55 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=46.8
Q ss_pred CCCcccccccCCCCccccceeeecCCccccCCCCc--ccccccc---------CCCCccccccccc--cCCCccceeeec
Q psy11081 73 DDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDS--FNTFFSE---------TGSGKHVPRAVFV--DLEPTVVDEVRT 139 (280)
Q Consensus 73 ~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~~--~~~~f~e---------~~~g~~~pRa~~v--Dlep~vi~~I~~ 139 (280)
+++|. +..++.|+|||||+||||.|+...-. |..+|+. .++|++|+-+.-+ ..++.++|-|.+
T Consensus 49 dvFFy----qadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~~s~~ggGAGNNWA~GY~~G~~~~e~ImdiIdr 124 (448)
T KOG1374|consen 49 DVFFY----QADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIFLSDHGGGAGNNWASGYSQGERVQEDIMDIIDR 124 (448)
T ss_pred cccee----eccCCccccceeeeccchHHHhccccchhhcccCccceEEecCCCCcccccccccccchhhHHHHHHHHHH
Confidence 57788 58889999999999999999886432 4333333 4899999998765 445556666655
Q ss_pred c
Q psy11081 140 G 140 (280)
Q Consensus 140 ~ 140 (280)
.
T Consensus 125 E 125 (448)
T KOG1374|consen 125 E 125 (448)
T ss_pred h
Confidence 4
No 31
>PLN00221 tubulin alpha chain; Provisional
Probab=98.57 E-value=2.9e-08 Score=96.42 Aligned_cols=52 Identities=33% Similarity=0.570 Sum_probs=39.6
Q ss_pred ccceeeecCCccccCCCC--c----c---ccccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 89 VPRAVFVDLEPTVVGGDD--S----F---NTFFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 89 ~PR~ll~Dl~~~~~~~~~--~----~---~~~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
+||+|+||+||.+++... + | +.++++.++|++|+++... .+.+.+++.|++.
T Consensus 62 ~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~ 125 (450)
T PLN00221 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKL 125 (450)
T ss_pred ccchhcCCCChhhhhhhccCccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHH
Confidence 599999999999987543 1 2 3467788999999998764 5555677777655
No 32
>PTZ00335 tubulin alpha chain; Provisional
Probab=98.56 E-value=4.6e-08 Score=94.97 Aligned_cols=64 Identities=34% Similarity=0.637 Sum_probs=49.6
Q ss_pred CCCcccccccCCCCccccceeeecCCccccCCCC--c----c---ccccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 73 DDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDD--S----F---NTFFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 73 ~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~--~----~---~~~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
+++|+ |+.+++|+||+|+||+||.+++... + | +.++++.++|++|+++... ++.+.+++.|++.
T Consensus 50 ~~fF~----e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~ 125 (448)
T PTZ00335 50 NTFFS----ETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKL 125 (448)
T ss_pred cceeE----EcCCCccccccccccCCcchhhhcccCccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHh
Confidence 67787 5788999999999999999988653 1 2 3466778999999998864 4555677777665
No 33
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=98.44 E-value=7.8e-08 Score=92.94 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=19.6
Q ss_pred ccccC--CCCccccccccc--cCCCccceeeec
Q psy11081 111 FFSET--GSGKHVPRAVFV--DLEPTVVDEVRT 139 (280)
Q Consensus 111 ~f~e~--~~g~~~pRa~~v--Dlep~vi~~I~~ 139 (280)
++++. ++|++|+++... +..+.+++.|++
T Consensus 90 ~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~ 122 (431)
T cd02188 90 FLSKHGGGAGNNWASGYSQGEEVQEEILDIIDR 122 (431)
T ss_pred EeeccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 899999998553 444566777766
No 34
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=98.43 E-value=1.5e-06 Score=81.03 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=84.7
Q ss_pred cccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhh
Q psy11081 166 HYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 245 (280)
Q Consensus 166 ~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN 245 (280)
....|++..++..+.|++.++..| -+.++..++||||+|.++.+.+.+++ | ....+++.++|+.. +-....-|
T Consensus 74 ~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake-~-g~ltvavvt~Pf~~--EG~~r~~~ 146 (338)
T COG0206 74 NPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE-L-GALTVAVVTLPFSF--EGSPRMEN 146 (338)
T ss_pred CcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh-c-CCcEEEEEEecchh--cCchHHHH
Confidence 355678888888888888887665 56778899999999999999998887 4 67788888999984 44455679
Q ss_pred hHHhHHHHhhcCCEEEEechHHHHHHHH
Q psy11081 246 SILTTHTTLEHSDCAFMVDNEAIKNEIL 273 (280)
Q Consensus 246 ~~lsl~~l~e~~d~~~~~dN~al~~i~~ 273 (280)
+.-.+..|.+++|.+++++|+.|.++..
T Consensus 147 A~~gi~~L~~~~DtlIvi~Ndkll~~~~ 174 (338)
T COG0206 147 AEEGIEELREVVDTLIVIPNDKLLKGKD 174 (338)
T ss_pred HHHHHHHHHHhCCcEEEEecHHHHhccC
Confidence 9999999999999999999999987754
No 35
>PLN00222 tubulin gamma chain; Provisional
Probab=98.35 E-value=2e-07 Score=90.63 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=19.0
Q ss_pred ccccC--CCCccccccccc--cCCCccceeeecc
Q psy11081 111 FFSET--GSGKHVPRAVFV--DLEPTVVDEVRTG 140 (280)
Q Consensus 111 ~f~e~--~~g~~~pRa~~v--Dlep~vi~~I~~~ 140 (280)
++++. ++|++|+++... +..+.+++.|++.
T Consensus 92 ~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~~ 125 (454)
T PLN00222 92 FVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDRE 125 (454)
T ss_pred eecccCCCcccchHHhHHHHHHHHHHHHHHHHHH
Confidence 44443 699999998542 4444666667653
No 36
>PLN00220 tubulin beta chain; Provisional
Probab=98.31 E-value=3e-07 Score=89.36 Aligned_cols=30 Identities=27% Similarity=0.570 Sum_probs=22.3
Q ss_pred ccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 111 FFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 111 ~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
++++.++|++|+++... .+.+.+++.|++.
T Consensus 91 ~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~ 123 (447)
T PLN00220 91 VFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKE 123 (447)
T ss_pred EecccCCCCccCceeecccHHHHHHHHHHHHHH
Confidence 66778999999999875 4445666676654
No 37
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=98.27 E-value=4e-07 Score=88.13 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=34.4
Q ss_pred eeeecCCccccCCCCc------c---ccccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 92 AVFVDLEPTVVGGDDS------F---NTFFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 92 ~ll~Dl~~~~~~~~~~------~---~~~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
+|+||++|.++++... | +.+.++.++|++|+++... ...+.+++.|++.
T Consensus 64 av~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~ 124 (434)
T cd02186 64 AVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKL 124 (434)
T ss_pred ccccCCcHHHHHhhccCccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHH
Confidence 4899999998775421 2 3466777899999998874 4555666666654
No 38
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=98.15 E-value=9.2e-07 Score=85.93 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=21.3
Q ss_pred ccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 111 FFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 111 ~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
++++.++|++|+++... ++.+.+++.|++.
T Consensus 87 ~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~ 119 (446)
T cd02189 87 ICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKE 119 (446)
T ss_pred eecCCCCccchhccccccchhhHHHHHHHHHHH
Confidence 56677999999998764 4445666666544
No 39
>KOG1376|consensus
Probab=97.90 E-value=4e-06 Score=77.83 Aligned_cols=89 Identities=37% Similarity=0.632 Sum_probs=58.4
Q ss_pred HhhhcCCCCCCCccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeecCCcccc
Q psy11081 23 YCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVV 102 (280)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~ 102 (280)
+|+||||+++|.......... . ++ ..+.+|+.. ..+|++||+++|||+|. +
T Consensus 24 ~clEhgi~~~g~~p~~~~~~~--------------------~-~~---~~~tff~~t----~~~k~~pr~~fVDlEPt-i 74 (407)
T KOG1376|consen 24 YCLEHGIQPDGQMPDDKSVGK--------------------G-DD---SFNTFFSET----GAGKHVPRAVFVDLEPT-I 74 (407)
T ss_pred HHHHhcCccCCcCCCCccccc--------------------c-Cc---ccceeeccc----ccccccceeEEEeccCc-c
Confidence 799999999999765433210 0 11 134555433 35899999999999999 8
Q ss_pred CCCC--cc-------ccccccCCCCccccccccc---cCCCccceeeecc
Q psy11081 103 GGDD--SF-------NTFFSETGSGKHVPRAVFV---DLEPTVVDEVRTG 140 (280)
Q Consensus 103 ~~~~--~~-------~~~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~~ 140 (280)
++.+ +| +.+-+++.+.++.+|+.+. ++-|.+++.|++.
T Consensus 75 devrtG~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~ 124 (407)
T KOG1376|consen 75 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL 124 (407)
T ss_pred chhcccchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHH
Confidence 7664 23 3355666788888997763 2444555555443
No 40
>PTZ00387 epsilon tubulin; Provisional
Probab=97.82 E-value=6.3e-06 Score=80.45 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=38.2
Q ss_pred CccccceeeecCCccccCCCC--c----c---ccccccCCCCccccccccc---cCCCccceeeec
Q psy11081 86 GKHVPRAVFVDLEPTVVGGDD--S----F---NTFFSETGSGKHVPRAVFV---DLEPTVVDEVRT 139 (280)
Q Consensus 86 ~~~~PR~ll~Dl~~~~~~~~~--~----~---~~~f~e~~~g~~~pRa~~v---Dlep~vi~~I~~ 139 (280)
++|+||+|+||+||.++++.. . | +.++++.++|++|+++... ...+.+++.|++
T Consensus 58 ~~~~pRav~vD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~ 123 (465)
T PTZ00387 58 ENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRR 123 (465)
T ss_pred ccccCcccccCCCccHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHH
Confidence 469999999999999987542 1 2 4467778999999998753 223344444443
No 41
>COG5023 Tubulin [Cytoskeleton]
Probab=96.86 E-value=0.0007 Score=63.38 Aligned_cols=61 Identities=56% Similarity=0.943 Sum_probs=47.0
Q ss_pred CccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeecCCccccCCCCccccccc
Q psy11081 34 ANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFS 113 (280)
Q Consensus 34 ~~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~ 113 (280)
..+||+|+|+|++||+++|+||||.|+|.++ +. +. +... ... .||+
T Consensus 7 lq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~--------~~--~~---~~~e------------------r~~---vfF~ 52 (443)
T COG5023 7 LQVGQCGNQIGNAFWETLCLEHGIGPDGTLL--------DS--SD---EGDE------------------RFD---VFFY 52 (443)
T ss_pred EecccchhHHHHHHHHHHHHhhCcCCCCCCC--------CC--cc---cccc------------------ccc---ceee
Confidence 3579999999999999999999999999744 11 11 0100 111 1999
Q ss_pred cCCCCcccccccccc
Q psy11081 114 ETGSGKHVPRAVFVD 128 (280)
Q Consensus 114 e~~~g~~~pRa~~vD 128 (280)
|.+.|+++||++++|
T Consensus 53 e~~~~k~vPRaI~vD 67 (443)
T COG5023 53 EASDGKFVPRAILVD 67 (443)
T ss_pred ecCCCccccceEEEe
Confidence 999999999999987
No 42
>PF13809 Tubulin_2: Tubulin like
Probab=96.33 E-value=0.018 Score=54.29 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=63.7
Q ss_pred eecccCcccccCcccccc---hhHHHHHHHHHHhh-----hhccc-cCCcceeeEeecCCCCCCChhHHHHHHhhhhh--
Q psy11081 152 ITGKEDAANNYARGHYTI---GKEIVDVVLDRIRK-----LSDQC-TGLQGFLIFHSFGGGTGSGFTSLLMERLSVDY-- 220 (280)
Q Consensus 152 i~~~~~agnn~a~G~y~~---g~~~~e~~~d~iR~-----~~E~c-d~lqgf~i~~s~~GGtGSG~~s~lle~L~deY-- 220 (280)
.....|||...+-|.... -.++.+.+.+.++. ..... +.---+.|+.|++||||||+---++..||+.+
T Consensus 99 ~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~ 178 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQ 178 (345)
T ss_pred CchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhc
Confidence 445567777777775322 23444455555552 11122 22224678889999999999999999999976
Q ss_pred ---CCCcceeEEEecCCCCCc---chhhhhhhHHhHHHH
Q psy11081 221 ---GKKSKLEFAIYPAPQVST---AVVEPYNSILTTHTT 253 (280)
Q Consensus 221 ---~k~~i~~~~v~P~~~~~~---~~v~~yN~~lsl~~l 253 (280)
....+..+.++|....+. .....-|+.-+|.+|
T Consensus 179 ~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL 217 (345)
T PF13809_consen 179 PGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKEL 217 (345)
T ss_pred ccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHH
Confidence 344577888899743221 133455777777666
No 43
>KOG1375|consensus
Probab=94.15 E-value=0.028 Score=52.68 Aligned_cols=55 Identities=42% Similarity=0.715 Sum_probs=40.3
Q ss_pred CcccccccCCCCccccceeeecCCccccCCCCc--ccccc----ccCCCCccccccccccC
Q psy11081 75 SFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDS--FNTFF----SETGSGKHVPRAVFVDL 129 (280)
Q Consensus 75 ~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~~--~~~~f----~e~~~g~~~pRa~~vDl 129 (280)
..+++|.+..+++|+||+|++||+|+++++.+. +...| ++.+.|++...+.++|.
T Consensus 10 ~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~~~sg~ghy~~ga~~~ds 70 (369)
T KOG1375|consen 10 RINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDNGQSGKGHYTEGAELVDS 70 (369)
T ss_pred eeeeeecccccccccchhheeeccCccccccccCccceeccCcCCccCccceeeeeeehhc
Confidence 345555578888999999999999999998753 22222 44567777777777775
No 44
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=72.85 E-value=9.3 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC
Q psy11081 173 IVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 236 (280)
Q Consensus 173 ~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~ 236 (280)
+...+.+.|++.+|+ .+.-|. .+.+-|.- =+++.++-.|+.+||...+ ..++|+...
T Consensus 27 ik~~L~~~i~~lie~--G~~~fi--~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q 83 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVRWFI--TGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQ 83 (177)
T ss_dssp HHHHHHHHHHHHHTT--T--EEE--E---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-T
T ss_pred HHHHHHHHHHHHHHC--CCCEEE--ECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccch
Confidence 334556666667764 233222 12222222 2345666678999986443 557887643
No 45
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=58.45 E-value=9.5 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCCCCChhHHHHHHhhhhhCC-CcceeEE
Q psy11081 202 GGTGSGFTSLLMERLSVDYGK-KSKLEFA 229 (280)
Q Consensus 202 GGtGSG~~s~lle~L~deY~k-~~i~~~~ 229 (280)
+|-|.|+|..++++||.++|+ ..+++..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 355779999999999999998 5555554
No 46
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=55.60 E-value=19 Score=29.01 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred cccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCc
Q psy11081 164 RGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 224 (280)
Q Consensus 164 ~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~ 224 (280)
+|+|.....+...+...+++...++..-+-+.+=||+||+ ++..+...++...+.+.
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~ 57 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRL 57 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCc
Confidence 3666666777777777777766665666555566888864 56666666666543333
No 47
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=52.13 E-value=14 Score=32.20 Aligned_cols=143 Identities=29% Similarity=0.413 Sum_probs=86.3
Q ss_pred ccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeecCCccccCCCCcccccccc
Q psy11081 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSE 114 (280)
Q Consensus 35 ~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e 114 (280)
-+|++|.|+++++|++++.||++ . . + .... ......+.||.+
T Consensus 6 ~iGq~G~qIg~~~~~~l~~e~~~------~----~---~-~~~~------------------------~~~~~~~~~f~~ 47 (216)
T PF00091_consen 6 GIGQCGNQIGDAFWELLCREHGI------N----P---D-SKSQ------------------------YNRENINSFFSE 47 (216)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCTB------T----T---T-SSSS------------------------TTSSTGCCTEEE
T ss_pred EeCCcHHHHHHHHHHHHHHhhcc------c----c---c-cccc------------------------cccccccceeee
Confidence 36899999999999999999974 1 0 1 0000 000112348999
Q ss_pred CCCCccccccccccCCCccceeeeccccccc-cCCc-cceecccC-cccccCcccccchhHHH-HHHHHHHhhhh-cccc
Q psy11081 115 TGSGKHVPRAVFVDLEPTVVDEVRTGTYRQL-FHPE-QLITGKED-AANNYARGHYTIGKEIV-DVVLDRIRKLS-DQCT 189 (280)
Q Consensus 115 ~~~g~~~pRa~~vDlep~vi~~I~~~~~~~l-f~~~-~~i~~~~~-agnn~a~G~y~~g~~~~-e~~~d~iR~~~-E~cd 189 (280)
...+.+.||+++ +|.=.+ ....+ ..+. .++..+.- .+..=+.+.|..|.... +++.+.+...+ +.-+
T Consensus 48 ~~~~~~~~r~i~-------iDtd~~-~l~~i~~~~~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e 119 (216)
T PF00091_consen 48 SSSGKYVPRAIA-------IDTDPK-VLDEIRASPKRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIE 119 (216)
T ss_dssp STTTBESEEEEE-------EESSHH-HHHHHHTSEETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccc-------cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence 888888888772 221111 11111 1111 23322221 12212444566666543 55666666655 4457
Q ss_pred CCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCc
Q psy11081 190 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 224 (280)
Q Consensus 190 ~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~ 224 (280)
..+.++.+.-+.|= |.|.||.+...|.+...+..
T Consensus 120 ~~d~~~~~~i~~sl-gGGTGSG~~~~l~~~l~~~y 153 (216)
T PF00091_consen 120 KCDSLDGFFIVHSL-GGGTGSGLGPVLAEMLREEY 153 (216)
T ss_dssp TSTTESEEEEEEES-SSSHHHHHHHHHHHHHHHTS
T ss_pred cccccccceecccc-cceeccccccccchhhhccc
Confidence 89999999888865 66999999999998875544
No 48
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=51.77 E-value=5.6 Score=34.05 Aligned_cols=42 Identities=33% Similarity=0.415 Sum_probs=30.6
Q ss_pred CccccceeeecCCccccCCC--Cc-------cccccccCCCCccccccccc
Q psy11081 86 GKHVPRAVFVDLEPTVVGGD--DS-------FNTFFSETGSGKHVPRAVFV 127 (280)
Q Consensus 86 ~~~~PR~ll~Dl~~~~~~~~--~~-------~~~~f~e~~~g~~~pRa~~v 127 (280)
+++.||+|++|+++.++... .+ .+..+.+...|++|+++...
T Consensus 8 g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~ 58 (192)
T smart00864 8 GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGA 58 (192)
T ss_pred CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCC
Confidence 38999999999999865432 11 13355666888999998775
No 49
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=51.31 E-value=34 Score=32.16 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.|.++.+.|+... +..+||.|+|..+- = -.++.++..+-..-+|..+++=+..|.... +|...-.++++.
T Consensus 65 ~~~w~~la~~I~~~~---~~~dG~VVtHGTDT--m-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~- 137 (335)
T PRK09461 65 PEDWQHIADDIKANY---DDYDGFVILHGTDT--M-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALY- 137 (335)
T ss_pred HHHHHHHHHHHHHHh---ccCCeEEEeeccch--H-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHHH-
Confidence 455666777776655 56899999997662 1 345666666555557778888888887654 455555555553
Q ss_pred HHHHhhcCCEEEEechH
Q psy11081 250 THTTLEHSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e~~d~~~~~dN~ 266 (280)
+..-...+...++|+++
T Consensus 138 ~A~~~~~~GV~V~f~~~ 154 (335)
T PRK09461 138 VAANYPINEVTLFFNNK 154 (335)
T ss_pred HHcCCCCCeEEEEECCE
Confidence 22211233455666653
No 50
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=47.50 E-value=15 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCC
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTG 205 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtG 205 (280)
+...++|+..+++++. +|..++.++ |||-
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp 70 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAE 70 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChH
Confidence 4567888888899999 999999999 6644
No 51
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=46.51 E-value=31 Score=32.05 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=58.2
Q ss_pred cccccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCC--
Q psy11081 158 AANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-- 235 (280)
Q Consensus 158 agnn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~-- 235 (280)
...||..=|++.|.+++++.... ++.| +.++ ||| |--+.+.+.||+.+|+ +-.+.|-|...
T Consensus 147 NpaN~~aH~~tT~~EI~~~~~g~----------~d~f--Vagv--GTG-GTitGvar~Lk~~~p~--i~iv~vdP~~S~~ 209 (300)
T COG0031 147 NPANPEAHYETTGPEIWQQTDGK----------VDAF--VAGV--GTG-GTITGVARYLKERNPN--VRIVAVDPEGSVL 209 (300)
T ss_pred CCccHHHHHhhhHHHHHHHhCCC----------CCEE--EEeC--Ccc-hhHHHHHHHHHhhCCC--cEEEEECCCCCcc
Confidence 34577766778888777665444 2222 2233 233 5567788899999998 44455666531
Q ss_pred CC----cchhh-hhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHH
Q psy11081 236 VS----TAVVE-PYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQI 276 (280)
Q Consensus 236 ~~----~~~v~-~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~ 276 (280)
.+ ...++ .=+......-..+..|-++-++++.-...+.+-.
T Consensus 210 ~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La 255 (300)
T COG0031 210 LSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLA 255 (300)
T ss_pred cCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHH
Confidence 00 11111 1112222222245688999999888888776644
No 52
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=46.41 E-value=21 Score=27.73 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCC
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTG 205 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtG 205 (280)
+++.+++++.+++.+.-+++.++.++.|||-
T Consensus 41 ~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 41 EDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 5667777778888888899999999998754
No 53
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=45.42 E-value=63 Score=29.95 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.+.++.+.|++..++ .+||.|+|..+- = -.++.++..+-+..+|..+++=+..|.... +|...-.++++..
T Consensus 56 ~~~~~~la~~i~~~~~~---~~GvVVtHGTDT--m-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~~ 129 (313)
T PF00710_consen 56 PEDWLELARAIQAALDD---YDGVVVTHGTDT--M-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVRV 129 (313)
T ss_dssp HHHHHHHHHHHHHHHTT---CSEEEEE--STT--H-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---cCeEEEecCchH--H-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHHH
Confidence 45566667777776643 999999997662 1 234555555555556777888888887653 4555555555544
Q ss_pred HHHHhhcCCEEEEechH
Q psy11081 250 THTTLEHSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e~~d~~~~~dN~ 266 (280)
..+-. .....++|+++
T Consensus 130 A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 130 AASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHSGG-TSSEEEEETTE
T ss_pred Hhccc-CCceEEEeCCC
Confidence 33332 56666777653
No 54
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=42.87 E-value=63 Score=30.12 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.|..+.+.|++..+ ..+||.|+|..+- = -.++..+..+-+. +|..+++=+..|.... +|...-.++++.
T Consensus 62 ~~~w~~l~~~I~~~~~---~~dGiVVtHGTDT--m-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~- 133 (323)
T cd00411 62 DEDWLKIAKDINELYD---SYDGFVITHGTDT--M-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY- 133 (323)
T ss_pred HHHHHHHHHHHHHHHH---hcCcEEEEcCccc--H-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH-
Confidence 4555666777766655 2899999996652 1 2345555554445 7888888888887654 344444444443
Q ss_pred HHHHhh--cCCEEEEechH
Q psy11081 250 THTTLE--HSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e--~~d~~~~~dN~ 266 (280)
.....+ .....++|+++
T Consensus 134 ~A~~~~~~~~gV~V~f~~~ 152 (323)
T cd00411 134 VAANYDSRGRGVLVVFNDR 152 (323)
T ss_pred HHcCcccCCCeEEEEECCE
Confidence 222212 44566777654
No 55
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=41.89 E-value=73 Score=30.85 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.|..+.+.|++.++ +..+||.|+|..+- = -.++..+..+-+..+|..+++=+..|.... +|...-.++++..
T Consensus 122 p~~w~~La~~I~~~~~--~~~dGvVVtHGTDT--M-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~ 196 (404)
T TIGR02153 122 PEYWIKIAEAVAKALK--EGADGVVVAHGTDT--M-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRA 196 (404)
T ss_pred HHHHHHHHHHHHHHhh--cCCCcEEEecCChh--H-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHHH
Confidence 5666777888877775 45799999997661 1 344555555444457778888888887654 4555555666543
Q ss_pred HHHHhhcCCEEEEechH
Q psy11081 250 THTTLEHSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e~~d~~~~~dN~ 266 (280)
-.. ..+...++|+++
T Consensus 197 A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 197 ATS--PIAEVTVVMHGE 211 (404)
T ss_pred HhC--CCCcEEEEECCc
Confidence 322 455677888775
No 56
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=41.12 E-value=40 Score=29.18 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=38.9
Q ss_pred cCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhC
Q psy11081 162 YARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYG 221 (280)
Q Consensus 162 ~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~ 221 (280)
.-+|++..-..+.+.+...+++..+++...+-+..=||+||+ +++.+.-.|+..++
T Consensus 99 vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~ 154 (229)
T cd00519 99 VHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGP 154 (229)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCC
Confidence 446777766777788888888887776665555555888864 66666666776653
No 57
>PLN02847 triacylglycerol lipase
Probab=41.06 E-value=32 Score=35.03 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=40.9
Q ss_pred cccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhh--hhCCCcceeEE
Q psy11081 164 RGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSV--DYGKKSKLEFA 229 (280)
Q Consensus 164 ~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~d--eY~k~~i~~~~ 229 (280)
+|+|.....+.+.+...|++..+++....-+.+=||+||| +++.+.-.|+. .|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGG----VAALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGG----TAALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHH----HHHHHHHHHhcCCCCCCceEEEec
Confidence 4555555567777778888888888766655555899975 56666666665 45555544554
No 58
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.31 E-value=31 Score=32.34 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred cCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhhhhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHhh
Q psy11081 200 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQ 278 (280)
Q Consensus 200 ~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~~ 278 (280)
++||+|+=|.+ .=|++|||..+--. . +.+..| +|++-+..+.. .+-++.+-|+....+...|++.
T Consensus 7 laGG~GsRLWP----LSR~~~PKQFl~L~----~---~~Sllq--~T~~R~~~l~~-~~~~~vVtne~~~f~v~eql~e 71 (333)
T COG0836 7 LAGGSGSRLWP----LSRKDYPKQFLKLF----G---DLSLLQ--QTVKRLAFLGD-IEEPLVVTNEKYRFIVKEQLPE 71 (333)
T ss_pred EeCCCccccCC----cCcccCCccceeeC----C---CCcHHH--HHHHHHhhcCC-ccCeEEEeCHHHHHHHHHHHhh
Confidence 67877765544 24788988764321 1 234444 67776666666 5678889999999999999874
No 59
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=39.25 E-value=45 Score=26.12 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCCCh
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGF 208 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~ 208 (280)
+++.+++++.+++.+.=+++.++.++-|||-.-.
T Consensus 42 ~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 42 ETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 5667777777777766789999999999876433
No 60
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=38.43 E-value=41 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCC
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTG 205 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtG 205 (280)
+++.+++++.+++.+.-+++.++.++-|||-
T Consensus 41 ~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 41 DDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 4566667777777777789999999998754
No 61
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=36.79 E-value=98 Score=28.82 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.|..+.+.|++.+. .+..+||.|+|..+- = -.++..+..+-+..+|..+++=+..|.... +|...-.++++..
T Consensus 59 ~~~w~~la~~i~~~~~-~~~~dG~VVtHGTDT--m-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~ 134 (323)
T smart00870 59 PADWLKLAKRINEALA-DDGYDGVVVTHGTDT--L-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRV 134 (323)
T ss_pred HHHHHHHHHHHHHHhc-cCCCCEEEEecCCcc--H-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHHH
Confidence 3444555555655432 257899999997662 1 234555655555557778888888887654 3444545555533
Q ss_pred HHHHhh--cCCEEEEechH
Q psy11081 250 THTTLE--HSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e--~~d~~~~~dN~ 266 (280)
- ...+ .....++|+++
T Consensus 135 A-~~~~a~~~GV~V~f~~~ 152 (323)
T smart00870 135 A-ASPEARGRGVLVVFNDE 152 (323)
T ss_pred H-cCcccCCCEEEEEECCE
Confidence 2 2112 34455666653
No 62
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=36.45 E-value=68 Score=30.11 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHH
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSIL 248 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~l 248 (280)
.+.|..+.+.|++..+ ..+||.|+|..+- = -.++..+..+-+. +|..+++=+..|.... +|...-.++++.
T Consensus 61 p~~w~~la~~I~~~~~---~~dG~VVtHGTDT--m-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~ 132 (336)
T TIGR00519 61 PEYWVEIAEAVKKEYD---DYDGFVITHGTDT--M-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVR 132 (336)
T ss_pred HHHHHHHHHHHHHHHh---cCCeEEEccCCch--H-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 5556677777776665 3899999997662 1 2345556554444 7888888888887653 455555555554
No 63
>PRK13660 hypothetical protein; Provisional
Probab=36.13 E-value=1.4e+02 Score=25.62 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCC-ChhHHHHHHhhhhhCCCcceeEEEecCCC
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGS-GFTSLLMERLSVDYGKKSKLEFAIYPAPQ 235 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGS-G~~s~lle~L~deY~k~~i~~~~v~P~~~ 235 (280)
..+...|+..+|+ .+.-|.+ +|.-|- =+++.++-.|+.+||...+ ..++|+..
T Consensus 29 ~aL~~~l~~~~e~--G~~wfi~----ggalG~d~wAaEvvl~LK~~yp~lkL--~~~~PF~~ 82 (182)
T PRK13660 29 KAIKRKLIALLEE--GLEWVII----SGQLGVELWAAEVVLELKEEYPDLKL--AVITPFEE 82 (182)
T ss_pred HHHHHHHHHHHHC--CCCEEEE----CCcchHHHHHHHHHHHHHhhCCCeEE--EEEeCccc
Confidence 4455556666663 3432322 222111 1346677789999985544 34678764
No 64
>PLN02408 phospholipase A1
Probab=34.62 E-value=77 Score=30.28 Aligned_cols=71 Identities=14% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhhccccCCc-ceeeE-eecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcc-hhhhhhh
Q psy11081 172 EIVDVVLDRIRKLSDQCTGLQ-GFLIF-HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA-VVEPYNS 246 (280)
Q Consensus 172 ~~~e~~~d~iR~~~E~cd~lq-gf~i~-~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~-~v~~yN~ 246 (280)
.+.+++.+.|++.+++...-+ .+.++ ||+|| .++.+..-.|+..++....+.+-.|-+|..++. ..+.+|.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGG----ALAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~Fa~~~~~ 252 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGA----ALATLTAYDIKTTFKRAPMVTVISFGGPRVGNRSFRRQLEK 252 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHH----HHHHHHHHHHHHhcCCCCceEEEEcCCCCcccHHHHHHHHh
Confidence 456778888888887764322 24444 67775 367777777888776555455555656655443 3334443
No 65
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=34.09 E-value=45 Score=28.59 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcc-eeEEEec
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSK-LEFAIYP 232 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i-~~~~v~P 232 (280)
+...+.+.+.++++..-. +.++ ||.+|...+..|++.|+-+.+ +..++.|
T Consensus 43 ~~a~~~l~~~i~~~~~~~-~~li-------GSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 43 EEAIAQLEQLIEELKPEN-VVLI-------GSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEE-------EEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 455666667777664333 5555 677777788889998875443 3333444
No 66
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=33.33 E-value=61 Score=31.43 Aligned_cols=141 Identities=25% Similarity=0.386 Sum_probs=84.7
Q ss_pred ccccccccccchhHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeecCCccccCCCCcccccccc
Q psy11081 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSE 114 (280)
Q Consensus 35 ~~~~~~~~~~~~~W~~~~~eh~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~PR~ll~Dl~~~~~~~~~~~~~~f~e 114 (280)
.+||+|+|+|+++|+++|+||+++++|. . +.. .. ++ .+..+.||.|
T Consensus 7 ~vGqcGnqiG~~~w~~l~~eh~~~~~g~------~---~~~-~~-----------~~-------------~~~~~~fF~e 52 (425)
T cd02187 7 QAGQCGNQIGAKFWEVISDEHGLDPTGT------Y---KGD-SD-----------LQ-------------LERINVYFNE 52 (425)
T ss_pred eCCccHhHHHHHHHHHHHHHcCCCCCCC------c---cCC-cc-----------cc-------------ccccceeEEe
Confidence 5799999999999999999999988763 1 000 00 00 0112238999
Q ss_pred CCCCccccccccccCCCccceeeeccccccccC-C-ccceecccCcccccCcccc------cchh-HHHHHHHHHHhhhh
Q psy11081 115 TGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH-P-EQLITGKEDAANNYARGHY------TIGK-EIVDVVLDRIRKLS 185 (280)
Q Consensus 115 ~~~g~~~pRa~~vDlep~vi~~I~~~~~~~lf~-~-~~~i~~~~~agnn~a~G~y------~~g~-~~~e~~~d~iR~~~ 185 (280)
..+++++||++++ +. -..+ ...+-. | ++++. .++...|.- ..|. ..-.++.|.+...+
T Consensus 53 ~~~~~~~pRav~i---D~-e~~~----i~~i~~~~~~~l~~-----~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~i 119 (425)
T cd02187 53 ASGGKYVPRAILV---DL-EPGT----MDSVRSGPFGQLFR-----PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 119 (425)
T ss_pred cCCCceeeeeeec---cC-Chhh----hhhhhcCcccceec-----CcceeeccCCCCCccCccchhhcHHHHHHHHHHH
Confidence 9999999999843 11 1111 111111 1 11111 123322322 2232 22346666665555
Q ss_pred cc-ccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCC
Q psy11081 186 DQ-CTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKK 223 (280)
Q Consensus 186 E~-cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~ 223 (280)
.+ .+..+.++-+.-+.+= |.|.||.+..+|-+...+.
T Consensus 120 r~~~E~cD~l~gf~~~~sl-~GGTGSG~gs~l~e~l~d~ 157 (425)
T cd02187 120 RKEAESCDCLQGFQLTHSL-GGGTGSGMGTLLISKIREE 157 (425)
T ss_pred HHhhccCCCcceEEEEeec-CCCccccHHHHHHHHHHHh
Confidence 44 5889999988888765 5589999999988887544
No 67
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=33.30 E-value=1.1e+02 Score=29.80 Aligned_cols=88 Identities=10% Similarity=0.085 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-CcchhhhhhhHHh
Q psy11081 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILT 249 (280)
Q Consensus 171 ~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-~~~~v~~yN~~ls 249 (280)
.+.|..+.+.|++..+. ..+||.|+|..+- = -.++..+..+- ..+|..+++=+..|.... +|...-.++++..
T Consensus 135 p~~W~~La~~I~~~~~~--~~dGvVVtHGTDT--M-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~ 208 (419)
T PRK04183 135 PEYWVEIAEAVYEEIKN--GADGVVVAHGTDT--M-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAVLA 208 (419)
T ss_pred HHHHHHHHHHHHHHhhc--cCCeEEEecCCch--H-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 56677788888887763 5999999997662 2 33455555444 557778888888887653 4555555555543
Q ss_pred HHHHhhcCCEEEEechH
Q psy11081 250 THTTLEHSDCAFMVDNE 266 (280)
Q Consensus 250 l~~l~e~~d~~~~~dN~ 266 (280)
-. ...+...++|+++
T Consensus 209 A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 209 AT--SDIAEVVVVMHGT 223 (419)
T ss_pred Hh--CCCCcEEEEECCc
Confidence 22 3455677778764
No 68
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=32.76 E-value=35 Score=26.64 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=35.6
Q ss_pred cccccchh-HHHHHHHHHHhhhhccccCCcceeeE-eecCCCCCCChhHHHHHHhhhhhCC
Q psy11081 164 RGHYTIGK-EIVDVVLDRIRKLSDQCTGLQGFLIF-HSFGGGTGSGFTSLLMERLSVDYGK 222 (280)
Q Consensus 164 ~G~y~~g~-~~~e~~~d~iR~~~E~cd~lqgf~i~-~s~~GGtGSG~~s~lle~L~deY~k 222 (280)
+|++..-. .+.+.+.+.|++..++... .-+.++ ||+|| +++..+.-.+...++.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPD-YSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTT-SEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC-ccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 45544444 6667788888887776554 444444 78876 4777777777777654
No 69
>PF03283 PAE: Pectinacetylesterase
Probab=32.74 E-value=1.3e+02 Score=28.67 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCC-cceeEE---EecCC---CCCc
Q psy11081 166 HYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKK-SKLEFA---IYPAP---QVST 238 (280)
Q Consensus 166 ~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~-~i~~~~---v~P~~---~~~~ 238 (280)
.|-.|....+.+++.|... .-+..+-+.+.-+.+||.| +..-.+++++.+|.. .+..++ .++.. ....
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~g---~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~~ 206 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGLG---AILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGNP 206 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHHH---HHHHHHHHHHHhccCceEEEeccccccccccCcccch
Confidence 4666788888888877665 2444556677766666544 233488899999953 222221 22211 1123
Q ss_pred chhhhhhhHHhHHHHh
Q psy11081 239 AVVEPYNSILTTHTTL 254 (280)
Q Consensus 239 ~~v~~yN~~lsl~~l~ 254 (280)
.+.+.|+.++.++...
T Consensus 207 ~~~~~~~~~~~~~~~~ 222 (361)
T PF03283_consen 207 CIRSFYSDVVGLQNWS 222 (361)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 3455666666665553
No 70
>PLN03013 cysteine synthase
Probab=31.07 E-value=1e+02 Score=30.06 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=41.8
Q ss_pred eEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC-----Ccchhhhhh-hHHhHHHHhhcCCEEEEechHHHH
Q psy11081 196 IFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-----STAVVEPYN-SILTTHTTLEHSDCAFMVDNEAIK 269 (280)
Q Consensus 196 i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~-----~~~~v~~yN-~~lsl~~l~e~~d~~~~~dN~al~ 269 (280)
++.++|+| |..+.+...|++..|+..++.+-..-+... ....++-.. ......-..+..|.++.++-+...
T Consensus 284 vV~~vGtG---GtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~ 360 (429)
T PLN03013 284 FVAGIGTG---GTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAI 360 (429)
T ss_pred EEEeCCcc---HHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHH
Confidence 34455544 677888899999888765555432211100 000111111 111222223567899999888887
Q ss_pred HHHHHHH
Q psy11081 270 NEILLQI 276 (280)
Q Consensus 270 ~i~~~~~ 276 (280)
..+..-.
T Consensus 361 ~a~r~La 367 (429)
T PLN03013 361 ETAKQLA 367 (429)
T ss_pred HHHHHHH
Confidence 7776654
No 71
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=29.26 E-value=70 Score=28.29 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=21.9
Q ss_pred eEeecCCCCCCChhHHHHHHhhhhhCCC
Q psy11081 196 IFHSFGGGTGSGFTSLLMERLSVDYGKK 223 (280)
Q Consensus 196 i~~s~~GGtGSG~~s~lle~L~deY~k~ 223 (280)
++-+++||+|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 4558999999997 55888999999755
No 72
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=28.45 E-value=70 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.6
Q ss_pred CCChhHHHHHHhhhhhCCCcce
Q psy11081 205 GSGFTSLLMERLSVDYGKKSKL 226 (280)
Q Consensus 205 GSG~~s~lle~L~deY~k~~i~ 226 (280)
|.|+|+.|+..+.+.++++.+.
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEE
Confidence 5699999999999999776654
No 73
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=27.59 E-value=12 Score=35.59 Aligned_cols=18 Identities=61% Similarity=0.872 Sum_probs=17.8
Q ss_pred eEEEEecCchhhHHHHHh
Q psy11081 2 ECISIHVGQAGVQIGNAC 19 (280)
Q Consensus 2 Eiitlq~Gq~gn~ig~~f 19 (280)
|||+||+||||||||.+|
T Consensus 1 eii~i~vGq~G~qig~~~ 18 (382)
T cd06059 1 EIISIQIGQCGNQIGNKF 18 (382)
T ss_pred CeEEEecCCcHHHHHHHH
Confidence 899999999999999999
No 74
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.29 E-value=87 Score=27.28 Aligned_cols=55 Identities=20% Similarity=0.411 Sum_probs=40.8
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEec
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYP 232 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P 232 (280)
..+.|.+|+.+|.-+.+.|+ +.--.|.|-|++-...+--.++|++..++.|-.+-
T Consensus 69 ~aifevlr~y~eg~~Dl~Gi---Se~pdgAGEG~SYAeAa~~~seY~Davi~aFDTYg 123 (244)
T COG4053 69 KAIFEVLRKYAEGFDDLRGI---SEDPDGAGEGLSYAEAASPISEYGDAVIIAFDTYG 123 (244)
T ss_pred HHHHHHHHHHhhcccccccc---cCCCCcCCCCchHhhhcCchhhcCceEEEEEeccc
Confidence 45789999999988877764 22334557888766666667899999999887654
No 75
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.98 E-value=36 Score=25.65 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=19.9
Q ss_pred cceeeEeecCCCCCCChhHHHHHHhhh
Q psy11081 192 QGFLIFHSFGGGTGSGFTSLLMERLSV 218 (280)
Q Consensus 192 qgf~i~~s~~GGtGSG~~s~lle~L~d 218 (280)
.+|.++.+...|+|+.+.+.++++|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 467899999988887777777777654
No 76
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=25.71 E-value=1.9e+02 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.0
Q ss_pred cceeeEeecCCCCCCChhHHHHHHhhh
Q psy11081 192 QGFLIFHSFGGGTGSGFTSLLMERLSV 218 (280)
Q Consensus 192 qgf~i~~s~~GGtGSG~~s~lle~L~d 218 (280)
+++.++.+...|+|+++.+.+++.|..
T Consensus 162 ~~lkVvvd~~~G~~~~~~~~ll~~lG~ 188 (443)
T cd03089 162 RPLKVVVDAGNGAAGPIAPQLLEALGC 188 (443)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCC
Confidence 799999999999998888888887743
No 77
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.61 E-value=1.1e+02 Score=27.89 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=51.6
Q ss_pred ccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCC--CCCc
Q psy11081 161 NYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP--QVST 238 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~--~~~~ 238 (280)
||..+|.+.|.|+.+++ .. .++ .++.++++| |+.+.+...+++..|+..++. |-|.. ...
T Consensus 148 ~~~~~~~t~~~Ei~eq~----~~------~~d--~iv~~vG~G---g~~~Gi~~~lk~~~~~~kvig--Vep~~~~~i~- 209 (296)
T PRK11761 148 NPLAHYETTGPEIWRQT----EG------RIT--HFVSSMGTT---GTIMGVSRYLKEQNPAVQIVG--LQPEEGSSIP- 209 (296)
T ss_pred hHHHHhhchHHHHHHhc----CC------CCC--EEEecCCcH---HHHHHHHHHHHHhCCCCEEEE--EecCCCCcCc-
Confidence 44456667777665543 11 122 345555544 677788888988877655544 44432 111
Q ss_pred chhh-hhhhHHhHHHHhhcCCEEEEechHHHHHHHHHHHh
Q psy11081 239 AVVE-PYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQIL 277 (280)
Q Consensus 239 ~~v~-~yN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~~~ 277 (280)
.+.. +...+..+ -..+..|.++.++-+.+...+..-.+
T Consensus 210 g~~~~~~~~~~~~-~~~~~vd~~v~V~d~e~~~a~~~l~~ 248 (296)
T PRK11761 210 GIRRWPEEYLPKI-FDASRVDRVLDVSQQEAENTMRRLAR 248 (296)
T ss_pred CCCCCCCCcCCcc-cChhhCCEEEEECHHHHHHHHHHHHH
Confidence 0100 00000011 01345678888888887777665443
No 78
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.60 E-value=2.7e+02 Score=25.68 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCC-----cceeEEEecCCCCCcchhhhhhhHHh
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKK-----SKLEFAIYPAPQVSTAVVEPYNSILT 249 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~-----~i~~~~v~P~~~~~~~~v~~yN~~ls 249 (280)
+-+...+|.+++.||++ ||-|...++|....+.+-. .|+.+-=-|. .+.|.--.|-+
T Consensus 5 ~~~r~~l~~Qak~C~s~-------------GSpf~a~lle~Va~~l~~s~~v~~~Il~wrG~p~---g~aV~lRl~Ga-- 66 (350)
T COG4427 5 EHVRNALRSQAKVCDSL-------------GSPFTARLLELVAARLDLSGGVGESILGWRGAPE---GDAVPLRLAGA-- 66 (350)
T ss_pred HHHHHHHHHHhhhhccc-------------CCHHHHHHHHHHHhhcccccchhhhhcccCCCCc---ccchhhhhhhh--
Confidence 44678899999999987 8999999999998887633 3444322222 23333233333
Q ss_pred HHHHhhcCCEEEE--------echHHHHHHHHHHHhh
Q psy11081 250 THTTLEHSDCAFM--------VDNEAIKNEILLQILQ 278 (280)
Q Consensus 250 l~~l~e~~d~~~~--------~dN~al~~i~~~~~~~ 278 (280)
||.|.----.-++ .|-+++..-|.+.+.|
T Consensus 67 LHalvl~gr~~~L~a~~p~~~~d~ea~w~aia~al~q 103 (350)
T COG4427 67 LHALVLDGRAPVLRADYPPTGWDAEALWPAIARALRQ 103 (350)
T ss_pred HHHHHHcCCCccccccCCCCCchhhHHHHHHHHHHHh
Confidence 3444311111111 3678888888777655
No 79
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=24.04 E-value=1.2e+02 Score=27.59 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=29.3
Q ss_pred ccCcccccchhHHHHHH-HHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEE
Q psy11081 161 NYARGHYTIGKEIVDVV-LDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 230 (280)
Q Consensus 161 n~a~G~y~~g~~~~e~~-~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v 230 (280)
.|+.|||..+.+-.++. ..++...+|+++-=.|-.|+ .+|.|+| | ++..+..+| +..+.++.+
T Consensus 30 ~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vL-DiGcGwG-~----~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 30 KYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVL-DIGCGWG-G----LAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp --S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEE-EES-TTS-H----HHHHHHHHH---EEEEEES
T ss_pred CCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEE-EeCCCcc-H----HHHHHHHHc-CcEEEEEEC
Confidence 45667777766644444 44466778888666666555 7777766 3 344566667 344444443
No 80
>PLN02371 phosphoglucosamine mutase family protein
Probab=24.03 E-value=1.6e+02 Score=29.74 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC---CcchhhhhhhHHhHHHHh-hcCCEEEEech
Q psy11081 190 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV---STAVVEPYNSILTTHTTL-EHSDCAFMVDN 265 (280)
Q Consensus 190 ~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~---~~~~v~~yN~~lsl~~l~-e~~d~~~~~dN 265 (280)
.++++.|+.+...|+|+.+...+++.|--+ .+...-.-|.+.. ......+.|--.....+. ..+|..+.+|-
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~Dg 335 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDT 335 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 357999999999999988888888877422 1111112222211 122333444444444443 35888888884
Q ss_pred H
Q psy11081 266 E 266 (280)
Q Consensus 266 ~ 266 (280)
+
T Consensus 336 D 336 (583)
T PLN02371 336 D 336 (583)
T ss_pred C
Confidence 4
No 81
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=23.74 E-value=1e+02 Score=29.02 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=7.6
Q ss_pred HHHHHHHhCC
Q psy11081 48 WELYCLEHGI 57 (280)
Q Consensus 48 W~~~~~eh~i 57 (280)
|++++.|-.+
T Consensus 138 W~~Ql~EgNY 147 (369)
T PF02456_consen 138 WETQLCEGNY 147 (369)
T ss_pred HHHHHHhcCC
Confidence 8888888554
No 82
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=23.29 E-value=64 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhccccC-CcceeeEeecCCC
Q psy11081 175 DVVLDRIRKLSDQCTG-LQGFLIFHSFGGG 203 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~-lqgf~i~~s~~GG 203 (280)
+...++|++.+|++++ =+|+.++.++ ||
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Gg 70 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GS 70 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CC
Confidence 3456778888888866 8899999999 65
No 83
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=22.20 E-value=2.2e+02 Score=20.40 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhccc--cCCcceeeEeecC----CCCCCChhHHHHHHhhhhhCCCcceeEE
Q psy11081 175 DVVLDRIRKLSDQC--TGLQGFLIFHSFG----GGTGSGFTSLLMERLSVDYGKKSKLEFA 229 (280)
Q Consensus 175 e~~~d~iR~~~E~c--d~lqgf~i~~s~~----GGtGSG~~s~lle~L~deY~k~~i~~~~ 229 (280)
++....++..++.| ...+.+.|+|..+ +|. +-..+.+.|++.|....+..+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 34555666666665 3568888888877 443 6777777787666666666654
No 84
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.47 E-value=1.3e+02 Score=24.62 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHH
Q psy11081 175 DVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLM 213 (280)
Q Consensus 175 e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~ll 213 (280)
+.+.+.+...++.-|+=+|+.++.++-|||-+-.++.++
T Consensus 43 ~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~ 81 (143)
T COG2893 43 DLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLA 81 (143)
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHH
Confidence 334444444555556668999999999998766666554
No 85
>KOG1481|consensus
Probab=21.15 E-value=73 Score=29.60 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=31.6
Q ss_pred cccCcccccchhHHHHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecC
Q psy11081 160 NNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA 233 (280)
Q Consensus 160 nn~a~G~y~~g~~~~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~ 233 (280)
.||-.=|-+.|.++|++....| ++|.- +-||| |--+.+...|++.- +..+-++..-|-
T Consensus 193 AN~~aHyetTGPEIw~QtkGni----------DaFia----~~GTG-GTiaGVskyLkek~-~~~v~~~laDPp 250 (391)
T KOG1481|consen 193 ANWLAHYETTGPEIWHQTKGNI----------DAFIA----GTGTG-GTIAGVSKYLKEKS-DGRVAVFLADPP 250 (391)
T ss_pred HHHHHHhcCcCcHHHHhhcCCc----------ceEEe----ccCCC-cchHHHHHHHhhcC-CCceEEEEeCCC
Confidence 3666666677888887765544 33322 22344 33445566677654 334555555553
No 86
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=20.92 E-value=3.3e+02 Score=26.60 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhhhhhCCCcceeEEEecCCCC---CcchhhhhhhHHhH
Q psy11081 174 VDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV---STAVVEPYNSILTT 250 (280)
Q Consensus 174 ~e~~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~---~~~~v~~yN~~lsl 250 (280)
.+...+.|++.+..-..+.++.++.+.+.|+|+.+...+++.|- ..+......|.+.. ...+.++.+..|.-
T Consensus 159 ~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~ 233 (464)
T COG1109 159 LDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLAK 233 (464)
T ss_pred HHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHHH
Confidence 34445555555443346777899999988877666666665543 33444444454322 12233333332222
Q ss_pred HHHhhcCCEEEEechHH
Q psy11081 251 HTTLEHSDCAFMVDNEA 267 (280)
Q Consensus 251 ~~l~e~~d~~~~~dN~a 267 (280)
.-....+|..+-+|-++
T Consensus 234 ~v~~~~aDlgia~DgDa 250 (464)
T COG1109 234 AVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHhcCCCEEEEecCCC
Confidence 22223688888777553
No 87
>PRK04940 hypothetical protein; Provisional
Probab=20.61 E-value=1.3e+02 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=23.0
Q ss_pred CCChhHHHHHHhhhhhCCC-cceeEEEecCC
Q psy11081 205 GSGFTSLLMERLSVDYGKK-SKLEFAIYPAP 234 (280)
Q Consensus 205 GSG~~s~lle~L~deY~k~-~i~~~~v~P~~ 234 (280)
||++|...++.|.+.|.-+ .++..+|.|..
T Consensus 66 GSSLGGyyA~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 66 GVGLGGYWAERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred EeChHHHHHHHHHHHHCCCEEEECCCCChHH
Confidence 7889999999999999744 45565677754
No 88
>KOG3010|consensus
Probab=20.58 E-value=65 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=18.9
Q ss_pred HhhcCCEEEEechHHHHHHHHHHHhh
Q psy11081 253 TLEHSDCAFMVDNEAIKNEILLQILQ 278 (280)
Q Consensus 253 l~e~~d~~~~~dN~al~~i~~~~~~~ 278 (280)
|+-.+.|+--|||+.+++...+.+|.
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk 128 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRK 128 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCC
Confidence 33344455568999999999988864
No 89
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=20.11 E-value=73 Score=27.18 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=27.7
Q ss_pred CcceeeEeecCC--CCCCChhHHHHHHhhhhhCCCcceeEEEecCCCCCcchhh-hhhhHHhH
Q psy11081 191 LQGFLIFHSFGG--GTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVE-PYNSILTT 250 (280)
Q Consensus 191 lqgf~i~~s~~G--GtGSG~~s~lle~L~deY~k~~i~~~~v~P~~~~~~~~v~-~yN~~lsl 250 (280)
..-+.+.+.+.| |||-||.-++++.|+.++|.....-----|-....+.++| ..|.+|+|
T Consensus 114 ~~~vv~stTi~GYEGtGRgF~lkf~~~L~~~~~~~~~~~~L~~PIR~~~~DPlE~wl~~~llL 176 (177)
T PF05127_consen 114 FPRVVFSTTIHGYEGTGRGFSLKFLKQLKKHRPRNWRELELSEPIRYAPGDPLEAWLNDLLLL 176 (177)
T ss_dssp SSEEEEEEEBSSTTBB-HHHHHHHHCT----ST-TEEEEE--S-SSS-TT-HHHHHHHHHCT-
T ss_pred CCEEEEEeeccccccCCceeeeehhhhccccCCCccEEEEcCCCccCCCcCcHHHHHHHhhCc
Confidence 344555556665 7888999999999988876222222122344332333333 45666654
No 90
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=20.07 E-value=3e+02 Score=26.61 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHhhhhccccCCcceeeEeecCCCCCCChhHHHHHHhh
Q psy11081 177 VLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLS 217 (280)
Q Consensus 177 ~~d~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~L~ 217 (280)
-.+.+++.+. ...+++.++-+...|+++.+...++++|.
T Consensus 161 Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~lG 199 (448)
T PRK14318 161 YLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAAG 199 (448)
T ss_pred HHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 3444444443 24579999999999988888888888774
No 91
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=20.05 E-value=1.2e+02 Score=24.53 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=24.3
Q ss_pred HHHHhhhhhCCCcceeEEEecCCCC------CcchhhhhhhHHh
Q psy11081 212 LMERLSVDYGKKSKLEFAIYPAPQV------STAVVEPYNSILT 249 (280)
Q Consensus 212 lle~L~deY~k~~i~~~~v~P~~~~------~~~~v~~yN~~ls 249 (280)
+++.++..+|+..++..++.|.... ....+..||.++.
T Consensus 80 l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~ 123 (174)
T cd01841 80 IIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIK 123 (174)
T ss_pred HHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHH
Confidence 4666777788887777777775421 2235667777754
No 92
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=20.04 E-value=76 Score=19.05 Aligned_cols=14 Identities=50% Similarity=0.980 Sum_probs=8.2
Q ss_pred CCCCCCChhHHHHHH
Q psy11081 201 GGGTGSGFTSLLMER 215 (280)
Q Consensus 201 ~GGtGSG~~s~lle~ 215 (280)
..|+|||+ +.++++
T Consensus 11 tSGSGSG~-p~LvqR 24 (30)
T smart00467 11 TSGSGSGL-PLLVQR 24 (30)
T ss_pred cCCCCCCc-hhHHHH
Confidence 55778887 444443
Done!