RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11081
(280 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 430 bits (1108), Expect = e-151
Identities = 180/234 (76%), Positives = 198/234 (84%), Gaps = 32/234 (13%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
++GQAG+QIGNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGSGKHVPRAVF
Sbjct: 7 HIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVF 66
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
+DLEPTV+ DEVRTGTYRQLFHPEQLI+G
Sbjct: 67 IDLEPTVI--------------------------------DEVRTGTYRQLFHPEQLISG 94
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
KEDAANN+ARGHYTIGKEI+D+VLDRIRKL+D CTGLQGFLIFHSFGGGTGSGF SLL+E
Sbjct: 95 KEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLE 154
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
RLSVDYGKKSKLEF +YP+PQVSTAVVEPYNS+LTTH+ LEHSDC+FMVDNEAI
Sbjct: 155 RLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAI 208
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 414 bits (1067), Expect = e-145
Identities = 171/268 (63%), Positives = 193/268 (72%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RE ISIH+GQAG+Q+GNACWEL+CLEHGIQPD
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPD---------------------------- 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDK +G DD+FNTFFSETG+GKHVPR VF+DLEPTV+
Sbjct: 34 GQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVI------------------ 75
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDR
Sbjct: 76 --------------DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+D CTGLQGFL+FH+ GGGTGSG SLL+ERLSVDYGKKSKL F IYP+PQVSTAV
Sbjct: 122 IRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNS+L+TH+ LEH+D A M+DNEAI
Sbjct: 182 VEPYNSVLSTHSLLEHTDVAVMLDNEAI 209
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 413 bits (1063), Expect = e-145
Identities = 176/268 (65%), Positives = 198/268 (73%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIH+GQAG+Q+GNACWELYCLEHGIQPD
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPD---------------------------- 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKTVGGGDD+FNTFFSETG+GKHVPRAVFVDLEPTV+
Sbjct: 34 GQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVI------------------ 75
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDR
Sbjct: 76 --------------DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+D CTGLQGFL+F++ GGGTGSG SLL+ERLSVDYGKKSKL F +YP+PQVSTAV
Sbjct: 122 IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNS+L+TH+ LEH+D A ++DNEAI
Sbjct: 182 VEPYNSVLSTHSLLEHTDVAVLLDNEAI 209
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 343 bits (883), Expect = e-117
Identities = 125/236 (52%), Positives = 150/236 (63%), Gaps = 34/236 (14%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
VGQ G QIGNA WE CLEHGI PDG +
Sbjct: 8 QVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD-------------------------- 41
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
GD+ F+ FF E GK VPRA+ VDLEP V+D+VR G Y LFHPE +I G
Sbjct: 42 --------EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFG 93
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
KE A NN+ARGHYT+GKEI+D V+D IR+ +D C GLQGFL+ HS GGGTGSG SLL+E
Sbjct: 94 KEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLE 153
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
RL +Y KK KL F+++PAP+VS VVEPYNS+LT H LE+SDC F+VDNEA+ +
Sbjct: 154 RLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYD 209
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 230 bits (589), Expect = 2e-73
Identities = 93/235 (39%), Positives = 132/235 (56%), Gaps = 34/235 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG WE+ EHG+ P G D S + R
Sbjct: 8 AGQCGNQIGAKFWEVISDEHGLDPTGTYKGD------------------SDLQLERI--- 46
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
N +F+E GK+VPRA+ VDLEP +D VR+G + QLF P+ + G+
Sbjct: 47 -------------NVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQ 93
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMER 215
A NN+A+GHYT G E++D VLD +RK ++ C LQGF + HS GGGTGSG +LL+ +
Sbjct: 94 SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK 153
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
+ +Y + F+++P+P+VS VVEPYN+ L+ H +E+SD F +DNEA+ +
Sbjct: 154 IREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYD 208
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 217 bits (554), Expect = 1e-68
Identities = 80/156 (51%), Positives = 108/156 (69%)
Query: 124 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRK 183
+ VDL+P V++E+ G +LF P QL+ GKE + NN+ARG+YTIG E++D +LDRIRK
Sbjct: 22 LILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRK 81
Query: 184 LSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 243
++C LQGF I HS GGGTGSG SLL+E LS +Y K F+I+P+PQ S+ VVEP
Sbjct: 82 QVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEP 141
Query: 244 YNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQK 279
YNSIL+ + LE+SD + DNEA+ N + Q+
Sbjct: 142 YNSILSLNHLLENSDSVILFDNEALYNILTRQLDID 177
Score = 45.3 bits (108), Expect = 2e-05
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 2 ECISIHVGQAGVQIGNACWELY 23
E ISI +GQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL 22
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 203 bits (519), Expect = 1e-65
Identities = 86/236 (36%), Positives = 111/236 (47%), Gaps = 45/236 (19%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
VG AG IGNA WEL C EHGI PDG +
Sbjct: 5 GVGGAGNNIGNALWELLCKEHGIDPDGMLFHA---------------------------- 36
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
D N FF E+G G + PR + +D +P V++E++ G +LF L G
Sbjct: 37 -----------DKINVFFEESGDGVYGPRFIAIDTDPQVLNEIKAGN--KLFIGNNLTKG 83
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
E A NN A G+YT KE + L+ IRK ++C GL GF I GGGTGSG ++ E
Sbjct: 84 LEGAGNNPAVGYYTH-KEAAEESLEEIRKELEKCDGLDGFFITAGLGGGTGSGAAPVIAE 142
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
L YG L A+ P S VV PYN+IL +EHSD ++DN+A+
Sbjct: 143 ILKELYG---ALTVAVVTFPFTSEGVVRPYNAILGLKELIEHSDSVIVIDNDALLE 195
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 201 bits (515), Expect = 3e-65
Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 108 FNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 167
F G P AV VDLEP V+D VR T Q +PE L +GK A NN+ RG
Sbjct: 1 KIKVFGV---GGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57
Query: 168 T-----IGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 222
+G+E + LD IR+ + G I GGGTG+G ++ E +YG
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGI 113
Query: 223 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
+ + P VV PYN+ L EH D ++DN+A+ +
Sbjct: 114 LT-VAVVTK--PFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLD 158
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 205 bits (523), Expect = 9e-65
Identities = 76/145 (52%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 124 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRK 183
V VD EP V+DE +G YR LF QLIT A NN+A GH T G+E + +LD IRK
Sbjct: 22 LVLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRK 81
Query: 184 LSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 243
+++C LQGF I HS GGGTGSG +L ERL +Y K+ K+ F+I P P +V P
Sbjct: 82 EAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGV-IVRP 140
Query: 244 YNSILTTHTTLEHSDCAFMVDNEAI 268
YNSILT HT EHSDC ++DNEA+
Sbjct: 141 YNSILTLHTLTEHSDCLVVIDNEAL 165
Score = 40.1 bits (94), Expect = 6e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 2 ECISIHVGQAGVQIGNACWELYCL 25
E ++I +GQAG QIG WE L
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQLVL 24
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 207 bits (529), Expect = 2e-64
Identities = 94/235 (40%), Positives = 134/235 (57%), Gaps = 34/235 (14%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
GQ G QIG+ WE+ EHGI P G D
Sbjct: 9 AGQCGNQIGSKFWEVISDEHGIDPTGTYQGDS---------------------------- 40
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
DL+ + N +++E G++VPRAV +DLEP +D VR G Y QLF P+ I G+
Sbjct: 41 DLQL------ERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQ 94
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMER 215
A NN+A+GHYT G E++D VLD +RK ++ C LQGF I HS GGGTGSG +LL+ +
Sbjct: 95 SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISK 154
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
L +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D + +DNEA+ +
Sbjct: 155 LREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYD 209
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 198 bits (506), Expect = 7e-61
Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 34/232 (14%)
Query: 37 GQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVD 96
GQ G QIG WE+ C EHGI P G D +
Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--------------------------Q 43
Query: 97 LEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE 156
LE N +++E G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+
Sbjct: 44 LE--------RINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS 95
Query: 157 DAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 216
A NN+A+GHYT G E++D VLD +RK ++ C LQGF + HS GGGTGSG +LL+ ++
Sbjct: 96 GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 155
Query: 217 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+
Sbjct: 156 REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 182 bits (464), Expect = 9e-55
Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 38/239 (15%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
VGQ G QIG+ W+ C EHGI PDG
Sbjct: 7 QVGQCGNQIGSEFWKQLCAEHGISPDGI-------------------------------- 34
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
LE G D + FF + +VPRA+ +DLEP V++ ++ YR L++PE +
Sbjct: 35 --LEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLS 92
Query: 155 KED--AANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLL 212
K A NN+A G Y+ G+E+ + +LD I + +D L+GF++ HS GGTGSG S L
Sbjct: 93 KHGGGAGNNWASG-YSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYL 151
Query: 213 MERLSVDYGKKSKLEFAIYPA-PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
+ERL+ Y KK ++++P + S VV+PYNSILT + ++DC ++DN A+
Sbjct: 152 LERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNR 210
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 163 bits (413), Expect = 4e-47
Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 39/240 (16%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
VGQ G QIG W+ CLEHGI DG
Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGI--------------------------------- 36
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
LE G D + FF + ++PRA+ +DLEP V++ ++ YR L++ E +
Sbjct: 37 -LEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSD 95
Query: 156 ED--AANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLM 213
A NN+A G Y G+++ + ++D I + +D L+GF++ HS GGTGSG S L+
Sbjct: 96 HGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLL 154
Query: 214 ERLSVDYGKKSKLEFAIYPA-PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEI 272
E L+ Y KK ++++P + S VV+PYNS+LT ++DC ++DN A+ N I
Sbjct: 155 EALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL-NRI 213
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 142 bits (360), Expect = 6e-40
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 112 FSETGSGKHV-PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 170
F + +H+ RAV +D+E VV+E+ G R LF QL+T A NN+A G++ G
Sbjct: 19 FWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYG 78
Query: 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI 230
+ +D +L++IRK +++C LQ F I HS GGGTGSG + ++E L+ ++ + + ++
Sbjct: 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSV 138
Query: 231 YPA--PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
YP+ V T+ PYNS+L +EH+DC ++N+A+
Sbjct: 139 YPSADDDVITS---PYNSVLALRELIEHADCVLPIENQAL 175
Score = 33.8 bits (78), Expect = 0.087
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEH 27
RE I + VGQ G QIG W+L EH
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH 27
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 134 bits (339), Expect = 2e-36
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 44/247 (17%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
+GQ G Q+G+ ++ E D+ D+ FFSE G+ + R+V
Sbjct: 6 QLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIARSVL 59
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
VD+EP V+ + + GT++ + + +I
Sbjct: 60 VDMEPKVIES----------------------------TLSKSSGGTWK--YDKKNVICQ 89
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
+ + NN+A G+Y G +I + +LD IRK ++C +GFL+ HS GGTGSG S + E
Sbjct: 90 QSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTE 149
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAV-VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEIL 273
L +Y + L + P + V V+ YN++LT E SD +++N+ I
Sbjct: 150 LLRDEYPESLLLNIVV--WPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDI----- 202
Query: 274 LQILQKL 280
+I KL
Sbjct: 203 HRICSKL 209
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 130 bits (330), Expect = 4e-35
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 37/243 (15%)
Query: 36 VGQAGVQIGNACWELYCLEH-GIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
VGQ G Q+G+ W++ EH I + Q DD+ ++FF + P
Sbjct: 9 VGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRP---- 55
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
G RAV VD+E V++++ LF ++
Sbjct: 56 ---------------------GKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSD 94
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
A NN+A GH G + +D + + +R+ +QC LQ F + HS GGGTGSG + ++
Sbjct: 95 VSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILG 154
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILL 274
L ++ + ++P+ V + PYNS +EH+DC +DN+A+ N I
Sbjct: 155 MLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALAN-IAD 212
Query: 275 QIL 277
L
Sbjct: 213 SAL 215
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 38.5 bits (90), Expect = 0.002
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 9/168 (5%)
Query: 106 DSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 165
D+ N +G G V A+ ++ + ++ Q + G
Sbjct: 17 DALNRHDKRSGFGYCV-GALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELG 75
Query: 166 HYTIGKEIVDVVLDRIRKLSDQCTGL-QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 224
+ + + + +R + D+ T L+ GGGTGSG +L + L Y
Sbjct: 76 ----AEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERY---E 128
Query: 225 KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEI 272
+ +A+ P N+ + E +D + DN+A K +
Sbjct: 129 EPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKG 176
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 35.8 bits (83), Expect = 0.023
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 179 DRIRKLSDQCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP--- 234
DR+R ++C LQGF ++ G +G G + +E L +YGK S L + P
Sbjct: 139 DRLRFYVEECDYLQGFQVLCDLHDGFSGVG--AKCLEHLQDEYGKASLLFPGLPPVIPPD 196
Query: 235 -QVSTAVVEPYNSILTTHTTLEHSD 258
+ N+ L EHS
Sbjct: 197 ASSDKNSIRVLNTALGLAQLSEHSS 221
>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX. This
family consists of the GlgX protein from the E. coli
glycogen operon and probable equivalogs from other
prokaryotic species. GlgX is not required for glycogen
biosynthesis, but instead acts as a debranching enzyme
for glycogen catabolism. This model distinguishes GlgX
from pullanases and other related proteins that also
operate on alpha-1,6-glycosidic linkages. In the wide
band between the trusted and noise cutoffs are
functionally similar enzymes, mostly from plants, that
act similarly but usually are termed isoamylase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 688
Score = 31.2 bits (71), Expect = 0.65
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 80 FSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGK-HVPRAVFVDLEPTVVDEVR 138
F E S +P+AV VD + G + T + +T + HV F L P + +E+R
Sbjct: 121 FDERDSAPGMPKAVVVDPDFDWGGDEQRPRTPWEDTIIYEAHVKG--FTQLHPDIPEELR 178
Query: 139 TGTYRQLFHPEQL 151
GTY L HP +
Sbjct: 179 -GTYAGLAHPAMI 190
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 29.4 bits (66), Expect = 2.1
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 169 IGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF 228
+G E + V + I + + I GGGTG+G ++ E L + L
Sbjct: 66 LGAEAAEEVQEAI---DNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLK----RIGTLTV 118
Query: 229 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQILQKL 280
A+ P + N+ T + D ++ NE L QI +K
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEK-----LRQIGEKA 165
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 28.4 bits (64), Expect = 3.7
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 168 TIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
+G+ + ++ I + G + GGGTG+G ++ E
Sbjct: 76 EVGRAAAEESIEEIEEALK---GADMVFVTAGMGGGTGTGAAPVVAE 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,411,400
Number of extensions: 1398162
Number of successful extensions: 1176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 50
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)