RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11081
(280 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 369 bits (948), Expect = e-127
Identities = 200/268 (74%), Positives = 208/268 (77%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPD---------------------------- 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGDDSFNTFFSETG+GKHVPRAVFVDLEPTV+
Sbjct: 34 GQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVI------------------ 75
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 76 --------------DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYNSILTTHTTLEHSDCAFMVDNEAI
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAI 209
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 366 bits (942), Expect = e-126
Identities = 92/268 (34%), Positives = 131/268 (48%), Gaps = 62/268 (23%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RE + I GQ G QIG WE+ EHGI P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPT---------------------------- 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
G D + N +++E K+
Sbjct: 34 GSYHGDSD----------------------------------LQLERINVYYNEATGNKY 59
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
+RK S+ C LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS V
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTV 179
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYN+ L+ H +E++D + +DNEA+
Sbjct: 180 VEPYNATLSVHQLVENTDETYSIDNEAL 207
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 362 bits (931), Expect = e-124
Identities = 78/271 (28%), Positives = 124/271 (45%), Gaps = 66/271 (24%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RE I++ +GQ G QIG W+ C EHGI P+
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPE---------------------------- 34
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
+ T G D + FF + +
Sbjct: 35 AIVEEFATEG----------------------------------TDRKDVFFYQADDEHY 60
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDVVL 178
+PRAV +DLEP V+ + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 179 DRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP-QVS 237
D I + +D L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 238 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VV+PYNS+LT +++DC ++DN A+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTAL 210
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 356 bits (915), Expect = e-123
Identities = 87/268 (32%), Positives = 127/268 (47%), Gaps = 61/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RE +SIHVGQ G QI ++ W L EHG+
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTE----------------------------A 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
G + + + FF + GK+
Sbjct: 34 GTLKEGSNAAA---------------------------------NSNMEVFFHKVRDGKY 60
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRAV VDLEP V+ + G QLF ++ AANN+ARG+ G++++D +++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
I ++ GLQGFL+ HS GGG+GSG SL++ERL Y KK F++ P+P +S +
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
VEPYN+ILT L+++D A ++DNEA+
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEAL 208
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 355 bits (913), Expect = e-122
Identities = 85/268 (31%), Positives = 122/268 (45%), Gaps = 60/268 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
I + +GQAG QI + W+ CLEHGI P
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPL---------------------------T 36
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQ G SF + E+ SG +
Sbjct: 37 GQTAPGVAP--------------------------------RGNWSSFFSKLGESSSGSY 64
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
VPRA+ VDLEP+V+D V+ LF+P LI+ E A N+A G+ G+E++ V+ R
Sbjct: 65 VPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 123
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
+ D+C + G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS+ V
Sbjct: 124 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 183
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAI 268
EPYN++ +T +D + DNEA+
Sbjct: 184 TEPYNTVFALNTLRRSADACLIFDNEAL 211
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 43.9 bits (103), Expect = 3e-05
Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 14/141 (9%)
Query: 149 EQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGF 208
I E + + ++ +I + C + + GG GSG
Sbjct: 51 TYHIPYAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSC---DIVIFVATMAGGAGSGI 106
Query: 209 TSLLMERLSVDYGKKSKLEFAIYPA----PQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 264
T ++ Y K + P + +N + T +++D
Sbjct: 107 TPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWND-IMRSTNEGKDISIYLLD 165
Query: 265 NEAIK-----NEILLQILQKL 280
N + N+ +
Sbjct: 166 NNKREKESDINKEFATLFNDF 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 36/244 (14%), Positives = 70/244 (28%), Gaps = 93/244 (38%)
Query: 82 ETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHV---PRAVFVDLEPTVVDEV- 137
ETG ++ + + E V D K V P+++ E +D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC-----------KDVQDMPKSILSKEE---IDHII 55
Query: 138 -----RTGTYRQLF-----HPEQLI-----------------------TGKEDAANNYAR 164
+GT R LF E+++ Y
Sbjct: 56 MSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 165 GH---YTIGKEIVDVVLDRIRKLSDQCTGLQ-----GFLIFHSFGGGTGSGFTSLLMERL 216
Y + + R++ L ++ G GSG T + ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALDVC 171
Query: 217 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKNEILLQI 276
Y + K++F I+ + ++ ++ E +L++
Sbjct: 172 L-SYKVQCKMDFKIF------------WLNLKNCNSP-----------------ETVLEM 201
Query: 277 LQKL 280
LQKL
Sbjct: 202 LQKL 205
Score = 29.8 bits (66), Expect = 1.2
Identities = 37/260 (14%), Positives = 66/260 (25%), Gaps = 90/260 (34%)
Query: 84 GSGKHV---------------PRAVF---------------------VDLEPTVVGGDDS 107
GSGK +F ++P D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 108 FNTFFSETGSGKHVPRAVFVDLE-PT---VVDEVRTGTYRQLFHPE--QLITGKE----D 157
+ S + R + V+ V+ F+ L+T + D
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 158 AANNYARGHYTI-----------GKEIVDVVLD-RIRKLSDQCTGLQGFLIFHSFGGGTG 205
+ H ++ K ++ LD R + L + +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--------- 330
Query: 206 SGFTSLLMERLSV-DYGKK---SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHS---- 257
S + + L+ D K KL I + S V+EP E+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEPA----------EYRKMFD 376
Query: 258 DCAFMVDNEAIKNEILLQIL 277
+ + I ILL ++
Sbjct: 377 RLSVFPPSAHIP-TILLSLI 395
Score = 28.7 bits (63), Expect = 2.5
Identities = 35/246 (14%), Positives = 65/246 (26%), Gaps = 76/246 (30%)
Query: 93 VFVD-LEPTVVGGDDSFNTF--FSETGSGKHVPRAVFV----DLEPTVVDEVRTGTYRQL 145
++ LEP F+ F H+P + D+ + V V
Sbjct: 361 SSLNVLEPAEY--RKMFDRLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVV-----NK 410
Query: 146 FHPEQLITGKEDAANNYARGH-------------YTIGKEIVDVVLDRIRKLSDQCTGLQ 192
H L+ ++ + Y + + IVD I K D +
Sbjct: 411 LHKYSLV--EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIP 466
Query: 193 --------GFLIFHSFGGGTGSGFTSLLMERLSVDYG-KKSKLEFAIYPAPQVSTAV--- 240
+ H T L + +D+ + K+ + +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 241 --VEPYNSILTTH-------------------TTLEHSDC------AFMVDNEAIKNEIL 273
++ Y + + L S A M ++EAI E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 274 LQILQK 279
Q+ Q+
Sbjct: 585 KQV-QR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.033
Identities = 48/260 (18%), Positives = 68/260 (26%), Gaps = 100/260 (38%)
Query: 43 IGNACWELY------------CLEHGIQPDGQM-----PSDKTVGGGDDSFNTFFSETGS 85
IG C+E Y LE+ M + + V + N+
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--- 362
Query: 86 GKHV-------PRAVFV------DLE-----------PTVVGGDDSFNTFFSETGSGKHV 121
GK V + V L P+ G D FSE K
Sbjct: 363 GKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPS---GLDQSRIPFSER---KLK 415
Query: 122 PRAVFVD---------LEPTVVDEVRTGTYRQ--LFHPEQL-I----TGKEDAANNYARG 165
F+ L P D + + F+ + + I T D ++ R
Sbjct: 416 FSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSD--LRV 470
Query: 166 HYT-IGKEIVDVVLDRIRKLSDQC--TGLQGFLIFH--SFGGGTGSGFTSLLME------ 214
I + IVD ++ F H FG G SG L
Sbjct: 471 LSGSISERIVDCII------RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 215 -RL----------SVDYGKK 223
R+ DYG K
Sbjct: 525 VRVIVAGTLDINPDDDYGFK 544
Score = 33.1 bits (75), Expect = 0.099
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 25/102 (24%)
Query: 157 DAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 216
+ A+N+ + Y G I+D+V++ L H FGG G +R+
Sbjct: 1647 NRADNHFKDTY--GFSILDIVINNPVN-----------LTIH-FGGEKG--------KRI 1684
Query: 217 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 258
+Y S + F ++ T + + +T T
Sbjct: 1685 RENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Score = 30.0 bits (67), Expect = 1.2
Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 51/191 (26%)
Query: 37 GQAGVQIGNACWELY---CLEHGIQPDGQMPSDKTVGGGDDSFN--TFFSETGSGKH--- 88
G+ G +I E Y E DG++ ++K ++ TF SE G
Sbjct: 1678 GEKGKRIR----ENYSAMIFETI--VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 89 -------VPRAVFVDL-EPTVVGGDDSFNTFFSETGSGKH--------VPRAVFVDLEPT 132
+ +A F DL ++ D +F +G H A + +E +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATF--------AG-HSLGEYAALASLADVMSIE-S 1781
Query: 133 VVDEVRT-GTYRQLFHP--EQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQ-- 187
+V+ V G Q+ P E + A N R + +E + V++R+ K +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 188 ------CTGLQ 192
Q
Sbjct: 1842 EIVNYNVENQQ 1852
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 30.7 bits (68), Expect = 0.49
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 154 GKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLM 213
+ ++ + + + + FLI GGG G+G+ SL++
Sbjct: 112 VTDLFDPETNPNANGYLDKLAQELGRKFTNEEGE-VIVDQFLICLGAGGGVGTGWGSLVL 170
Query: 214 ERLS 217
+ +
Sbjct: 171 QLIR 174
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 29.7 bits (67), Expect = 1.3
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 60 DGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFS-----E 114
+ G + + T SG + P+ V + P+ E
Sbjct: 126 SQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLV--PSTQSTGTKPTRAQKDDVIYE 183
Query: 115 TGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHP 148
HV R F + + ++ + R GTY
Sbjct: 184 V----HV-RG-FTEQDTSIPAQYR-GTYYGAGLK 210
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 28.9 bits (64), Expect = 1.7
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 169 IGKEIVDVVLDRIRK-LSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 216
+G+E +I + + + I GGGTG+G +E L
Sbjct: 89 VGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEML 137
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 28.7 bits (63), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 171 KEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLS 217
K I+ +V +I L D +++ +S GGG+GS L+ +L+
Sbjct: 61 KVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLA 107
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl
isomerase, catalytic triad, serine protease, leishmania
pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP:
c.46.1.2 c.46.1.2 d.26.1.3
Length = 373
Score = 28.1 bits (63), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 119 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHP 148
+HV A+ D++ + V T T R HP
Sbjct: 50 EHVKSAIRADVDTNLSKLVPTSTAR---HP 76
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 27.3 bits (61), Expect = 5.9
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 109 NTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 152
N+ S+ V +A FVD ++ G E +
Sbjct: 110 NSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAV 153
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 27.0 bits (60), Expect = 7.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 120 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQL 151
H+P A ++D +EV + EQL
Sbjct: 165 HIPGADYIDT-----NEVESEPLWNKVSDEQL 191
>2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus
zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A
Length = 387
Score = 26.9 bits (58), Expect = 7.8
Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 10/133 (7%)
Query: 119 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 178
+ R + + P + R + G AA + GH G+ ++
Sbjct: 42 DNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAAHAAKH---GHARFGRTYPGLLP 98
Query: 179 DRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 238
+ R HS GG T SLL + ++ P +
Sbjct: 99 ELKRGGRIHIIA-------HSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151
Query: 239 AVVEPYNSILTTH 251
V +I T H
Sbjct: 152 HFVLSVTTIATPH 164
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 26.8 bits (60), Expect = 8.5
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 60 DGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFS-----E 114
DG+ + + G + + P+ V V D T + E
Sbjct: 101 DGEFKDNPLLHAGHNEP----DYRDNAAIAPKCVVVVDHYD-WEDDAPPRTPWGSTIIYE 155
Query: 115 TGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQL 151
HV + L P + E+R GTY+ L HP +
Sbjct: 156 A----HV-KG-LTYLHPEIPVEIR-GTYKALGHPVMI 185
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 26.5 bits (59), Expect = 9.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 164 RGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGG 203
R + V VL + + GL FL+ HS GG
Sbjct: 87 RMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGA 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,398,233
Number of extensions: 273477
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 34
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)