RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11081
(280 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 278 bits (712), Expect = 3e-95
Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 34/236 (14%)
Query: 35 NVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVF 94
GQ G QIG WE+ EHGI P G D +
Sbjct: 8 QAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ------------------------ 43
Query: 95 VDLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 154
+ N +++E K+VPRA+ VDLEP +D VR+G + Q+F P+ + G
Sbjct: 44 ----------LERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 93
Query: 155 KEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLME 214
+ A NN+A+GHYT G E+VD VLD +RK S+ C LQGF + HS GGGTGSG +LL+
Sbjct: 94 QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLIS 153
Query: 215 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
++ +Y + F++ P+P+VS VVEPYN+ L+ H +E++D + +DNEA+ +
Sbjct: 154 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 209
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 277 bits (709), Expect = 1e-94
Identities = 199/270 (73%), Positives = 208/270 (77%), Gaps = 60/270 (22%)
Query: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPD 60
RECISIHVGQAGVQIGNACWELYCLEHGIQPD
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPD---------------------------- 33
Query: 61 GQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKH 120
GQMPSDKT+GGGDDSFNTFFSETG+GKHVPRAVFVDLEPTV+
Sbjct: 34 GQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVI------------------ 75
Query: 121 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 180
DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+D+VLDR
Sbjct: 76 --------------DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
IRKL+DQCTGLQGF +FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
VEPYNSILTTHTTLEHSDCAFMVDNEAI +
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 257 bits (657), Expect = 9e-87
Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 32/235 (13%)
Query: 36 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGKHVPRAVFV 95
+GQAG QI + W+ CLEHGI P + G+
Sbjct: 9 IGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNW--------------------- 47
Query: 96 DLEPTVVGGDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK 155
SF + E+ SG +VPRA+ VDLEP+V+D V+ LF+P LI+
Sbjct: 48 ----------SSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRT 96
Query: 156 EDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMER 215
E A N+A G+ G+E++ V+ R+ D+C + G ++ H+ GGGTGSGF +LL+E
Sbjct: 97 EGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIES 156
Query: 216 LSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIKN 270
L YG+ L A+ P+PQVS+ V EPYN++ +T +D + DNEA+ +
Sbjct: 157 LKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFD 211
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 31.1 bits (70), Expect = 0.099
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 148 PEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSG 207
++++ GK+ A G+ IG+E + I+ I GGGTG+G
Sbjct: 60 DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIK---AAIQDSDMVFITCGLGGGTGTG 116
Query: 208 FTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEA 267
+ ++ +S G L A+ P V V N++ +H+D ++ NE
Sbjct: 117 S-APVVAEISKKIG---ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEK 172
Query: 268 IKN 270
+
Sbjct: 173 LFE 175
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 29.9 bits (67), Expect = 0.26
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 146 FHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTG 205
+ IT A G + + + I FGGGTG
Sbjct: 48 IQIGENITRGLGAGGRPEIGEQAALESEEKI--------REVLQDTHMVFITAGFGGGTG 99
Query: 206 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 265
+G S ++ +++ + G + AI P +I +H D + N
Sbjct: 100 TGA-SPVIAKIAKEMGILT---VAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISN 155
Query: 266 EAIKNEI 272
+ E+
Sbjct: 156 NKLMEEL 162
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 29.2 bits (65), Expect = 0.54
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 164 RGHYTIGKEIVDVVLDRIRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMER 215
G +T + D V+ +++ + ++ HS G + + L +
Sbjct: 110 LGFWTSWTNVRDSVMKHLKETMAANPDYELVVVGHSLGAAVATLAAADLRTK 161
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 27.2 bits (60), Expect = 1.8
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 181 IRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 240
++S+ G I GGGTG+G ++ E + L A+ P
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK----EMGILTVAVVTRPFPFEGR 131
Query: 241 VEPYNSILTTHTTLEHSDCAFMVDNEAIKNEI 272
+ E D + NE + +
Sbjct: 132 KRMQIADEGIRALAESVDSLITIPNEKLLTIL 163
>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp.
AR9 [TaxId: 301298]}
Length = 127
Score = 25.7 bits (56), Expect = 3.8
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 6/99 (6%)
Query: 28 GIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGSGK 87
+ + A A + I + + F E
Sbjct: 33 QLSVNGAEEIDATGCYVIPIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPF-EGMEVY 91
Query: 88 HVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVF 126
+V V F + GSG+++ R F
Sbjct: 92 GEVVSVLSRGSFVVRDK-----QFVGQAGSGQYIKRTTF 125
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 440
Score = 25.9 bits (56), Expect = 6.5
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 15 IGNACWELYCLEHGIQPDDANVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDD 74
IG C L G+ +A QA + + G + SD V G
Sbjct: 256 IGLFCGCLLLNHVGLNKGEAMFLQAK--------DPHAYISGDIIECMAASDNVVRAGFT 307
>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 128
Score = 24.7 bits (53), Expect = 8.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 87 KHVPRAVFVDLEPTVVGGDDSFNTFFSETGSGKHVPRAVF 126
P +V E V F + G G+++ RA +
Sbjct: 92 TGEPVSVLCRGEFVVRDK-----QFVGKPGYGQYLKRAKY 126
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 25.3 bits (55), Expect = 10.0
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 194 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 253
++I G +++M + + A+ A + Y+ I T H
Sbjct: 10 YIIVAIVMLLRGFAD-AIMM-----------RSQQALASAGEAGFLPPHHYDQIFTAHGV 57
Query: 254 L 254
+
Sbjct: 58 I 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,065,727
Number of extensions: 50622
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 19
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)