BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11082
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 273/334 (81%), Positives = 278/334 (83%), Gaps = 37/334 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 317
EGEFSEARED+AALEKDYEEVG+DS E E EG E
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE 448
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 542 bits (1397), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/326 (82%), Positives = 274/326 (84%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/326 (82%), Positives = 273/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA---------- 240
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 241 ------SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/326 (82%), Positives = 273/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA---------- 240
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 241 ------SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/326 (81%), Positives = 273/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 536 bits (1382), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/325 (81%), Positives = 271/325 (83%), Gaps = 37/325 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL + QI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL----------------MSQI 234
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDS 308
EGEFSEARED+AALEKDYEEVG DS
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGADS 439
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 536 bits (1381), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/326 (81%), Positives = 272/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 535 bits (1379), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/326 (81%), Positives = 272/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 266/326 (81%), Positives = 272/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 266/326 (81%), Positives = 272/326 (83%), Gaps = 37/326 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI------------ 238
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
TASLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 239 ----TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSV 309
EGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGVDSV 440
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/323 (82%), Positives = 270/323 (83%), Gaps = 37/323 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA---------- 240
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITNA
Sbjct: 241 ------SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------------PVG 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA VG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGM 306
EGEFSEARED+AALEKDYEEVG+
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGV 437
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/331 (66%), Positives = 244/331 (73%), Gaps = 37/331 (11%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL H LL+E LS +YGKKSKLEFA+YPAPQVST+VVEPYN++LT
Sbjct: 132 GLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLT 191
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
THTTLEH+DC FMVDNEAIYD+C+RNLDI RP++ NLN LI Q+VSS+TA
Sbjct: 192 THTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTA---------- 241
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
SLRFDG+LNVDL EFQTNLVPYPRIHFPLV+Y+PV+S KA+HE SV EITNA
Sbjct: 242 ------SLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNA 295
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV---------------------G 223
CFEP NQMVKCDPR GKYMA C+LYRGDVV +DV V G
Sbjct: 296 CFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIG 355
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
I Y+PPT P LA V RAVCMLSNTT+IAEAW R+D KFDLMYAKRAFVHWYVGEGME
Sbjct: 356 ICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGME 415
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGE 314
EGEF+EAREDLAALE+DY EVG DS E E
Sbjct: 416 EGEFTEAREDLAALERDYIEVGADSYAEEEE 446
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 173/326 (53%), Gaps = 37/326 (11%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF I H LL+ ++ ++ + F++ P+P+ S VEPYN+ L+
Sbjct: 130 LQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +EHSD F +DNEA+YDIC+R L + +P+Y +LN L+ ++S +T SLR P
Sbjct: 190 HQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + NLVP+PR+HF +V YAP+ + L+V E+T
Sbjct: 244 ----------GQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV----------NAPVGINYQPP------ 229
F+ N M DPR+G+Y+ +RG V K+V N+ + + P
Sbjct: 294 FDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV 353
Query: 230 -TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 288
+V P G + A ++N+T+I E + R+ +F M+ ++AF+HWY EGM+E EFS
Sbjct: 354 CSVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFS 409
Query: 289 EAREDLAALEKDYEEVGMDSVEGEGE 314
EA ++ L +Y++ +VE + E
Sbjct: 410 EAESNMNDLVSEYQQYQEATVEDDEE 435
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQM-LNIQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + H LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
F+ N M CDPRHG+Y+ ++RG + K+V+ + +N Q +P
Sbjct: 294 FDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 409 TEAESNMNDLVSEYQQ 424
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 157/312 (50%), Gaps = 30/312 (9%)
Query: 5 GLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+ H L++ERL Y KK F++ P+P +S + VEPYN+ILT
Sbjct: 130 GLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILT 189
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+T
Sbjct: 190 LQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVT----------- 237
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
ASLRF G LN DL+EF TNLVP+P HF ++AP+ A + + + ++
Sbjct: 238 -----ASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARE 292
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVG-----INYQPPTVVPGG-DLA 238
F N D + G Y+A L+RGDV KDV+ + +NY GG L
Sbjct: 293 TFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLG 352
Query: 239 KVQRA-------VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR 291
+ A L N T IA + RL +FD+M+ A+ HWY G+ ++AR
Sbjct: 353 YAETAPEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKAR 412
Query: 292 EDLAALEKDYEE 303
+A L + Y +
Sbjct: 413 NQIATLAQSYRD 424
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 30/309 (9%)
Query: 8 GFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 67
G ++ H LL+E L YG+ L A+ P+PQVS+ V EPYN++ +T
Sbjct: 136 GIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNT 195
Query: 68 TLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSS 127
+D + DNEA++D+ R +IE PT +LN LI + ++
Sbjct: 196 LRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLI----------------TEALAG 239
Query: 128 ITASLRFDGALNVDLT--EFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
ITAS+RF G L V+++ E TNLVP P +HF + +AP+ +++ E+L + E+ +
Sbjct: 240 ITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSL 299
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRG--------DVVPKDVNAPVGINYQPPTVVPGGDL 237
F+ + C P G++++ +LYRG D + + + Y PT G +
Sbjct: 300 FDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYV 359
Query: 238 AKV----QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 293
+ ++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E + + R
Sbjct: 360 EQPGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRAS 419
Query: 294 LAALEKDYE 302
L + Y+
Sbjct: 420 AQELVQSYQ 428
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 42/321 (13%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILT 64
L+GF++ H L+ERL+ Y KK ++++P ++S VV+PYNS+LT
Sbjct: 132 LEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
+++DC ++DN A+ I L I+ P+++ +N+L+ I+S+ T +LR P
Sbjct: 192 LKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYP----- 246
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVMEITN 183
G +N DL +L+P PR+HF + Y P+ + + A + +V+++
Sbjct: 247 -----------GYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMR 295
Query: 184 ACFEPANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAPVG--INYQPPTVVPGGDLA 238
+P N MV Y+A + +G+V P V+ + + +P G A
Sbjct: 296 RLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP-A 354
Query: 239 KVQRAVC---------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
+Q A+ M++N T+I+ + R ++D + + AF+ + E M
Sbjct: 355 SIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 284 EGEFSE---AREDLAALEKDY 301
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 42/321 (13%)
Query: 6 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILT 64
L+GF++ H L+ERL+ Y KK ++++P ++S VV+PYNS+LT
Sbjct: 132 LEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
+++DC ++DN A+ I L I+ P+++ +N+L+ I+S+ T +LR P
Sbjct: 192 LKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYP----- 246
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK-AYHEQLSVMEITN 183
G +N DL +L+P PR+HF + Y P+ + + A + +V+++
Sbjct: 247 -----------GYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMR 295
Query: 184 ACFEPANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAPVG--INYQPPTVVPGGDLA 238
+P N MV Y+A + +G+V P V+ + + +P G A
Sbjct: 296 RLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP-A 354
Query: 239 KVQRAVC---------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
+Q A+ M++N T+I+ + R ++D + + AF+ + E M
Sbjct: 355 SIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 284 EGEFSE---AREDLAALEKDY 301
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 36
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 285 GEFSEAREDLAALEKDYEEVGMDSV 309
GEFSEARED+AALEKDYEEVG+DSV
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSV 25
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 224 INYQPPTVVPGGDLAKVQRAVCM--LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 281
+ +Q P VPG +A R L +AE W ++ +L+ +++ Y+ EG
Sbjct: 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG 143
Query: 282 MEEGE 286
GE
Sbjct: 144 FSGGE 148
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 30/137 (21%)
Query: 77 MVDNEAIYDICRRNLDIERPTYTNLNRL---IGQIVSSITASLRVPDLGQIVSSITASLR 133
+ D E I ICR+N+ P + +N + QI S +T L V + + S++ SL+
Sbjct: 48 ITDTEIIIGICRKNI----PGWKEINESYIEVKQIFSGLTNQLFVVSI--VNESMSLSLK 101
Query: 134 ----------------FDGALNVDLTEFQTNLVPYPRI--HFPLVTYAPVISAEKAYHEQ 175
+D + +D+ + +N+ P I FP I E +Q
Sbjct: 102 HPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQ 161
Query: 176 LSVMEITNACFEPANQM 192
L ++T+ C E A M
Sbjct: 162 L---QLTHICVEVAKNM 175
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 132 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
L+F G LN L F+ P+P+ FP+ + P E + S +I +
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNPKDGNEAGILTRTSSSDILGS 321
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 38 KSKLEFAIYPAPQVSTAVVEPYNS--ILTTHTTLEHSDCA--FMVDNEAIYDICRRNLDI 93
K K I+ + +S VV+ Y + I + +++ A F++ + +YD N +
Sbjct: 228 KDKKHLGIH-SEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKV 286
Query: 94 E-RPT-YTNLNRLIGQI--VSSITASLRVPDLGQIVSSITASLRFDG 136
E +P Y N ++ Q + I A L+V +GQIVS + +F G
Sbjct: 287 ELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSG 333
>pdb|3U4E|G Chain G, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|J Chain J, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 124
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 23/111 (20%)
Query: 180 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVG-------INYQPPTVV 232
E+ N F ++ R K A + YR DVVP + N+P G IN Q T
Sbjct: 26 EVKNCSFNITTEL-----RDKKQKAYALFYRPDVVPLNKNSPSGNSSEYILINCQ-TTTT 79
Query: 233 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
D A + +N I W D A + F V EG+E
Sbjct: 80 EAVDAATAAKVFKQYANDNGIDGEWTYDD-------ATKTFT---VTEGLE 120
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 76 FMVDNEAIYDICRRNLDIE-RPT-YTNLNRLIGQIVS--SITASLRVPDLGQIVSSITAS 131
F+ +E +Y +N D+E P Y N R+I Q + SI + + + GQ+VS S
Sbjct: 273 FLXGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGS 332
Query: 132 LRFDG 136
+F G
Sbjct: 333 KQFSG 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,887,002
Number of Sequences: 62578
Number of extensions: 353818
Number of successful extensions: 773
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 39
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)