Query psy11082
Match_columns 319
No_of_seqs 133 out of 1157
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 9.4E-86 2E-90 603.9 16.2 296 2-318 126-442 (443)
2 PLN00221 tubulin alpha chain; 100.0 1.4E-76 3E-81 579.1 16.2 302 2-319 128-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.1E-74 2.3E-79 565.5 16.3 296 2-313 128-444 (448)
4 PTZ00010 tubulin beta chain; P 100.0 3.7E-73 8E-78 555.1 15.4 291 2-308 126-429 (445)
5 cd02186 alpha_tubulin The tubu 100.0 1.5E-72 3.2E-77 549.6 16.0 287 2-304 127-434 (434)
6 cd02187 beta_tubulin The tubul 100.0 1.9E-71 4.2E-76 540.8 16.2 288 2-305 125-425 (425)
7 PLN00220 tubulin beta chain; P 100.0 3.6E-71 7.7E-76 542.1 15.3 290 2-307 126-428 (447)
8 PLN00222 tubulin gamma chain; 100.0 1.7E-70 3.7E-75 536.3 16.6 294 2-311 128-448 (454)
9 cd02188 gamma_tubulin Gamma-tu 100.0 1.3E-70 2.8E-75 534.4 14.2 284 2-301 126-431 (431)
10 PTZ00387 epsilon tubulin; Prov 100.0 1.9E-69 4E-74 529.5 15.7 291 2-310 127-455 (465)
11 cd02190 epsilon_tubulin The tu 100.0 1.6E-67 3.4E-72 506.2 13.8 274 2-304 95-379 (379)
12 cd06059 Tubulin The tubulin su 100.0 6.5E-66 1.4E-70 497.1 15.4 286 2-303 85-382 (382)
13 cd02189 delta_tubulin The tubu 100.0 3.7E-65 8E-70 499.1 16.0 284 2-302 122-445 (446)
14 KOG1374|consensus 100.0 2.8E-63 6.1E-68 456.2 13.6 289 2-307 128-442 (448)
15 KOG1375|consensus 100.0 6.8E-59 1.5E-63 427.5 11.4 273 2-311 71-357 (369)
16 KOG1376|consensus 100.0 1.8E-57 3.8E-62 416.7 11.3 274 2-298 127-406 (407)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 5.4E-42 1.2E-46 324.7 10.1 203 2-221 85-287 (328)
18 cd06060 misato Human Misato sh 99.9 7.1E-26 1.5E-30 222.7 13.1 281 2-303 147-493 (493)
19 smart00864 Tubulin Tubulin/Fts 99.9 1.4E-24 3E-29 190.7 3.3 109 7-136 84-192 (192)
20 PF00091 Tubulin: Tubulin/FtsZ 99.9 2.4E-24 5.2E-29 192.6 2.1 96 2-99 120-215 (216)
21 cd02202 FtsZ_type2 FtsZ is a G 99.9 8.3E-23 1.8E-27 194.6 4.1 135 2-162 92-233 (349)
22 cd02191 FtsZ FtsZ is a GTPase 99.8 4.3E-22 9.3E-27 186.3 4.7 120 8-149 87-206 (303)
23 TIGR00065 ftsZ cell division p 99.8 2.9E-20 6.3E-25 176.8 3.6 123 2-149 101-223 (349)
24 cd02201 FtsZ_type1 FtsZ is a G 99.8 6.9E-20 1.5E-24 171.9 3.1 126 2-151 84-209 (304)
25 PRK13018 cell division protein 99.8 2.6E-19 5.5E-24 171.2 3.7 123 2-149 112-234 (378)
26 PF03953 Tubulin_C: Tubulin C- 99.7 4.5E-18 9.7E-23 139.6 2.9 105 153-262 1-126 (126)
27 PRK09330 cell division protein 99.7 1.1E-17 2.4E-22 160.2 2.0 123 7-150 99-221 (384)
28 PF14881 Tubulin_3: Tubulin do 99.3 7.1E-13 1.5E-17 115.0 3.7 77 2-79 70-152 (180)
29 COG0206 FtsZ Cell division GTP 98.9 3.5E-10 7.6E-15 106.6 2.4 125 5-151 95-219 (338)
30 KOG2530|consensus 98.9 1.5E-09 3.3E-14 103.4 4.6 77 2-79 200-283 (483)
31 smart00865 Tubulin_C Tubulin/F 96.9 9.2E-05 2E-09 59.1 -2.2 110 138-261 1-119 (120)
32 PF13809 Tubulin_2: Tubulin li 95.8 0.0084 1.8E-07 57.4 3.7 41 9-49 150-195 (345)
33 PF12953 DUF3842: Domain of un 69.4 4.5 9.8E-05 33.1 2.7 28 17-44 6-34 (131)
34 COG0572 Udk Uridine kinase [Nu 47.3 24 0.00053 31.6 3.7 27 11-38 9-35 (218)
35 COG1528 Ftn Ferritin-like prot 41.7 17 0.00038 31.1 1.8 53 248-306 92-146 (167)
36 PF04695 Pex14_N: Peroxisomal 36.0 11 0.00023 31.1 -0.3 28 268-298 24-51 (136)
37 smart00467 GS GS motif. Aa app 30.5 36 0.00078 20.6 1.4 13 16-29 11-23 (30)
38 COG0836 {ManC} Mannose-1-phosp 29.0 32 0.0007 32.6 1.6 64 15-92 7-70 (333)
39 TIGR01732 tiny_TM_bacill conse 26.9 47 0.001 19.3 1.4 13 16-28 1-13 (26)
40 PTZ00301 uridine kinase; Provi 26.5 37 0.0008 30.1 1.5 23 11-34 4-26 (210)
41 PF13508 Acetyltransf_7: Acety 26.1 84 0.0018 22.3 3.1 21 20-40 40-60 (79)
42 COG2518 Pcm Protein-L-isoaspar 26.0 41 0.00088 30.0 1.6 17 17-33 79-95 (209)
43 PRK07831 short chain dehydroge 25.8 41 0.00088 30.0 1.7 19 16-34 23-41 (262)
44 PF12210 Hrs_helical: Hepatocy 24.9 43 0.00092 26.0 1.3 53 247-304 28-89 (96)
45 KOG3178|consensus 24.3 73 0.0016 30.6 3.1 35 4-43 173-207 (342)
46 COG4962 CpaF Flp pilus assembl 22.7 41 0.00089 32.3 1.1 17 15-31 178-194 (355)
47 PF06908 DUF1273: Protein of u 22.1 34 0.00074 29.6 0.4 87 12-112 47-133 (177)
48 COG3958 Transketolase, C-termi 22.0 85 0.0018 29.5 2.9 32 8-44 245-279 (312)
49 cd05568 PTS_IIB_bgl_like PTS_I 21.1 95 0.0021 22.4 2.6 51 17-69 7-57 (85)
50 PF04542 Sigma70_r2: Sigma-70 21.0 67 0.0015 22.0 1.7 39 262-302 3-42 (71)
51 PF08259 Periviscerokin: Periv 20.9 44 0.00095 15.4 0.4 7 148-154 4-10 (11)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=9.4e-86 Score=603.94 Aligned_cols=296 Identities=63% Similarity=1.062 Sum_probs=278.1
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.||+||||+++||+|||||||+|+.|+|+|++||||+.+.+++|+|.++.+++||||||++|++++|++++|+++++||+
T Consensus 126 ~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNe 205 (443)
T COG5023 126 GCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNE 205 (443)
T ss_pred cCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|+++|.+.+++++|+|.++|++||+.+++ +|.++||||++|.||+++.+||||+|++||+.++
T Consensus 206 al~di~~~~L~i~~P~y~~lN~LIs~VmSs----------------vTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~s 269 (443)
T COG5023 206 ALYDICRRNLRIQNPSYDDLNQLISTVMSS----------------VTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVS 269 (443)
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHh----------------hhheeecCccccchHHHHHhcCCCCCcccccccc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP-------------------- 221 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~-------------------- 221 (319)
|+|+++..+..+++.++.+++++||+++|||++|+|+.|+|++++.++||++.+++++++
T Consensus 270 ytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~ 349 (443)
T COG5023 270 YTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGF 349 (443)
T ss_pred cCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcce
Confidence 999999998999999999999999999999999999999999999999999999988776
Q ss_pred -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082 222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 300 (319)
Q Consensus 222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~ 300 (319)
+++|..|| ....+++.++++|+|+|+|.+.|+++.++|++||+||||||||.++||||+||.||++.|.+|+++
T Consensus 350 ~vai~~~~P-----~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~e 424 (443)
T COG5023 350 KVAICKRPP-----SEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEE 424 (443)
T ss_pred eeeeeccCC-----cccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence 22222222 223457889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCC
Q psy11082 301 YEEVGMDSVEGEGEGAEE 318 (319)
Q Consensus 301 Y~~~~~~~~~~~~~~~~~ 318 (319)
|++++++..+++++..||
T Consensus 425 Y~~~~~~s~~~~~~~~~~ 442 (443)
T COG5023 425 YEAAEQDSYLDDEEDEEE 442 (443)
T ss_pred HHHhccccccchhhhhcc
Confidence 999999988777653333
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.4e-76 Score=579.08 Aligned_cols=302 Identities=82% Similarity=1.328 Sum_probs=277.3
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+.+++|+|+++.+++++++||++|+|++|.+++|++++|||+
T Consensus 128 ~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~ 207 (450)
T PLN00221 128 NCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (450)
T ss_pred hccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchH
Confidence 69999999999999999999999999999999999999999999999777899999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|+++|.+.++++.|+|+++|++||+.|++ +|+++||||+++.|++++++||||||++||++++
T Consensus 208 al~~~~~~~~~~~~p~~~dlN~lIa~~is~----------------~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s 271 (450)
T PLN00221 208 AIYDICRRSLDIERPTYTNLNRLISQVISS----------------LTASLRFDGALNVDITEFQTNLVPYPRIHFMLSS 271 (450)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHhhhccc----------------ccccccccccccCCHHHHHHhcCCCCCceeeccc
Confidence 999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP-------------------- 221 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~-------------------- 221 (319)
++|+.+..+..++.++|.+|++++|++.+++++++|+.|+||++++++||+...+++.+.
T Consensus 272 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~ 351 (450)
T PLN00221 272 YAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 351 (450)
T ss_pred cCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCE
Confidence 999988766677889999999999999999999999999999999999999766555443
Q ss_pred -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082 222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 300 (319)
Q Consensus 222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~ 300 (319)
++++..+|..+|++.+.+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||.||+++|++|+++
T Consensus 352 ~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~ 431 (450)
T PLN00221 352 KCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431 (450)
T ss_pred eeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 1222223333333444456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCCC
Q psy11082 301 YEEVGMDSVEGEGEGAEEY 319 (319)
Q Consensus 301 Y~~~~~~~~~~~~~~~~~~ 319 (319)
|++++....+++.|+-|||
T Consensus 432 Y~~~~~~~~~~~~~~~~~~ 450 (450)
T PLN00221 432 YEEVGAESAEGEGDEGEEY 450 (450)
T ss_pred HHHHhcccccccccccccC
Confidence 9999999999988888886
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-74 Score=565.47 Aligned_cols=296 Identities=84% Similarity=1.342 Sum_probs=269.5
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+.+++|+|+++.+++++++||++|+|++|++++|+++++||+
T Consensus 128 ~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~ 207 (448)
T PTZ00335 128 NCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNE 207 (448)
T ss_pred hccCccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechH
Confidence 59999999999999999999999999999999999999999999999777899999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|+++|.+.+++..++|+++|++||+.|++ +|+++||||+++.|+++|++||||||++||++++
T Consensus 208 al~~i~~~~~~~~~~~~~~~N~~Ia~~is~----------------~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s 271 (448)
T PTZ00335 208 AIYDICRRNLDIERPTYTNLNRLIAQVISS----------------LTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSS 271 (448)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhhcc----------------cccccccccccCCCHHHHhccccCCCCceecccc
Confidence 999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP-------------------- 221 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~-------------------- 221 (319)
++|+.+.....++.++|.+|++++|++++++++++|+.|+||++++++||+...+++.+.
T Consensus 272 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~ 351 (448)
T PTZ00335 272 YAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 351 (448)
T ss_pred cCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCE
Confidence 999988776778889999999999999999999999999999999999998766554432
Q ss_pred -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082 222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 300 (319)
Q Consensus 222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~ 300 (319)
++++..+|..+|.+.+.+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||.||+++|++|+++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~ 431 (448)
T PTZ00335 352 KCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431 (448)
T ss_pred eeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 1222233333344444456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCC
Q psy11082 301 YEEVGMDSVEGEG 313 (319)
Q Consensus 301 Y~~~~~~~~~~~~ 313 (319)
|+++..+..+||.
T Consensus 432 Y~~~~~~~~~~~~ 444 (448)
T PTZ00335 432 YEEVGAESADEEG 444 (448)
T ss_pred HHHHhccchhhhh
Confidence 9999876666544
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=3.7e-73 Score=555.08 Aligned_cols=291 Identities=40% Similarity=0.742 Sum_probs=266.0
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|.|+|+||++.+.+++|+|++..+++++++||++|++++|.+++|++++|||+
T Consensus 126 ~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~ 205 (445)
T PTZ00010 126 SCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNE 205 (445)
T ss_pred hccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccH
Confidence 59999999999999999999999999999999999999999999999777899999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|+++|.+.+++++|+|+++|++||+.|++ +|+++||||++|.|++++++||||||++||++++
T Consensus 206 al~~i~~~~l~~~~p~~~~lN~lIaq~is~----------------~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s 269 (445)
T PTZ00010 206 ALYDICFRTLKLTTPTYGDLNHLVSAVMSG----------------VTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMG 269 (445)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHhhccc----------------cccceecCCcccccHHHHHHHHhcCCCceeeecc
Confidence 999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcccccc-----CCCCeecCCC-
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGIN-----YQPPTVVPGG- 235 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~~~-----~~~p~~~~~~- 235 (319)
++|+.+..+..++.+++.+|++++|++++++++++|+.|+|+|+++++||++.++++.+.+... -..+.|+|..
T Consensus 270 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~ 349 (445)
T PTZ00010 270 FAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNI 349 (445)
T ss_pred cCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCE
Confidence 9999887766788899999999999999999999999999999999999998777665542110 0012244421
Q ss_pred -------CccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHhccCC
Q psy11082 236 -------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 308 (319)
Q Consensus 236 -------~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~ 308 (319)
.+.+.++++++++|+|+|.++|+++.++|++||+||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 350 ~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 350 KSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred EEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1234578999999999999999999999999999999999999999999999999999999999999998775
No 5
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.5e-72 Score=549.61 Aligned_cols=287 Identities=92% Similarity=1.463 Sum_probs=263.5
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+.+++|+|+...+++++++||++|+|++|.+++|++++|||+
T Consensus 127 ~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~ 206 (434)
T cd02186 127 NCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNE 206 (434)
T ss_pred cCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccH
Confidence 69999999999999999999999999999999999999999999999767789999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|.++|++.++++.++|+++|++||+.|++ +|++.||+|+++.|+++|+++|||||++||++++
T Consensus 207 al~~~~~~~~~~~~~~~~~lN~iIa~~l~~----------------~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s 270 (434)
T cd02186 207 AIYDICRRNLDIERPTYTNLNRLIAQVVSS----------------ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVS 270 (434)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhc----------------cccceecCCccCCCHHHHHhhccccccceeeccc
Confidence 999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc--------------------
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP-------------------- 221 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~-------------------- 221 (319)
++|+.+.....++.++|.+|++++|++.++|+.++++.++|+++++++||+...+++.+.
T Consensus 271 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~ 350 (434)
T cd02186 271 YAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF 350 (434)
T ss_pred cCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcE
Confidence 999988776778889999999999999999999999999999999999999766655443
Q ss_pred -ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHH
Q psy11082 222 -VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 300 (319)
Q Consensus 222 -~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~ 300 (319)
++++..||..+|++.+.+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||.||+++|++|+++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~ 430 (434)
T cd02186 351 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 430 (434)
T ss_pred eeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHH
Confidence 2223333333344444556789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy11082 301 YEEV 304 (319)
Q Consensus 301 Y~~~ 304 (319)
|+++
T Consensus 431 Y~~~ 434 (434)
T cd02186 431 YEEV 434 (434)
T ss_pred HhhC
Confidence 9863
No 6
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.9e-71 Score=540.84 Aligned_cols=288 Identities=40% Similarity=0.751 Sum_probs=261.1
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+++++|+|++..+++++++||++|+|++|.+++|++++|||+
T Consensus 125 ~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~ 204 (425)
T cd02187 125 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNE 204 (425)
T ss_pred cCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecH
Confidence 69999999999999999999999999999999999999999999999766799999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|.++|.+.+++..++|+++|++||+.|++ +|+++||||++|.|++++++||||||++||++++
T Consensus 205 al~~i~~~~~~~~~~~~~~~N~~ia~~is~----------------~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s 268 (425)
T cd02187 205 ALYDICFRTLKLTNPTYGDLNHLVSAVMSG----------------ITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPG 268 (425)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHhccccc----------------cceeeecCCccccCHHHHHHhcCCCCCceecccc
Confidence 999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcccccc-----CCCCeecCC--
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGIN-----YQPPTVVPG-- 234 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~~~-----~~~p~~~~~-- 234 (319)
++|+.+..+..++.+++.+|++++|+++++++.++|+.++|+++++++||+..++++.+.+... -..+.|+|.
T Consensus 269 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~ 348 (425)
T cd02187 269 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNV 348 (425)
T ss_pred cCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCE
Confidence 9999887666678899999999999999999889999999999999999997777665431100 001123332
Q ss_pred ------CCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHhc
Q psy11082 235 ------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 305 (319)
Q Consensus 235 ------~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~ 305 (319)
..+.+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||.||+++|++++++|++++
T Consensus 349 ~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~~ 425 (425)
T cd02187 349 KTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 425 (425)
T ss_pred eeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhhC
Confidence 11234578999999999999999999999999999999999999999999999999999999999999863
No 7
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=3.6e-71 Score=542.06 Aligned_cols=290 Identities=38% Similarity=0.732 Sum_probs=262.4
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+++|+|+||++.+++++|+|++..+++++++||++|+|++|.+++|++++|||+
T Consensus 126 ~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~ 205 (447)
T PLN00220 126 NCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (447)
T ss_pred hCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehH
Confidence 69999999999999999999999999999999999999999999999778999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|.++|.+.+++.+++|+++|++||+.+++ +|+++||||.++.++++++++|||+|++||++++
T Consensus 206 aL~~i~~~~~~i~~~sf~~~N~lIa~~is~----------------it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s 269 (447)
T PLN00220 206 ALYDICFRTLKLTTPSFGDLNHLISATMSG----------------VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG 269 (447)
T ss_pred HHHHHHHHhhcCCCCChHHHHhHhhccccc----------------cchhhccCCcCCccHHHHHHHhCCccceeEeecc
Confidence 999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCccccc---c--CCCCeecCCC-
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGI---N--YQPPTVVPGG- 235 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~~---~--~~~p~~~~~~- 235 (319)
++|+.+.....++.+++.+++++++++++++++++++.|+|+++++++||+...+++.+.+.. . -..+.|+|..
T Consensus 270 ~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~ 349 (447)
T PLN00220 270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNV 349 (447)
T ss_pred cCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCE
Confidence 999987665667889999999999999999998999999999999999999776655443110 0 0012244421
Q ss_pred -------CccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHhccC
Q psy11082 236 -------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 307 (319)
Q Consensus 236 -------~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~ 307 (319)
.+.+.++++++++|+|+|.++|+++.++|++||+||||||||+++||||+||.||+++|++|+++|+++.+.
T Consensus 350 ~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 350 KSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred EEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123457899999999999999999999999999999999999999999999999999999999999988764
No 8
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.7e-70 Score=536.29 Aligned_cols=294 Identities=29% Similarity=0.484 Sum_probs=260.8
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCC-CCcccccccccccccccccCCCCceeeecc
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDN 80 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN 80 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+.+++|+|++. .+++++++||++|+|++|.+++|+++++||
T Consensus 128 ~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN 207 (454)
T PLN00222 128 GSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDN 207 (454)
T ss_pred hCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecH
Confidence 6999999999999999999999999999999999999999999999863 578999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCcc
Q psy11082 81 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLV 160 (319)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~ 160 (319)
++|+++|.+.+++++|+|+++|++||+.|++ +|+++||||.+|.|++++++||||||++||+++
T Consensus 208 ~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~----------------~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~ 271 (454)
T PLN00222 208 TALNRIAVDRLHLENPTFAQTNSLVSTVMSA----------------STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMT 271 (454)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHhccccCC----------------cccccCCCCccCCCHHHHhhhcCCCCCceeecc
Confidence 9999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred ccccccchh-hhhcccCCHHHHHHHhcCCCCCceeccCCC-----CccceeeeeccccCCccCCCccccc---c--CCCC
Q psy11082 161 TYAPVISAE-KAYHEQLSVMEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAPVGI---N--YQPP 229 (319)
Q Consensus 161 ~~~Pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~-----~~~la~~~~~RG~~~~~~i~~~~~~---~--~~~p 229 (319)
+++|+.+.. ...++..++.++++++|+++++++.++|+. |+|+|+++++||++.++++.+.+.. . -..+
T Consensus 272 s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv 351 (454)
T PLN00222 272 GYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFI 351 (454)
T ss_pred ccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCcccc
Confidence 999997642 345677889999999999999999998887 9999999999999887776543100 0 0011
Q ss_pred eecCC---------CCc--cceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCC----cchHHHHHHHH
Q psy11082 230 TVVPG---------GDL--AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME----EGEFSEAREDL 294 (319)
Q Consensus 230 ~~~~~---------~~~--~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gme----e~eF~ea~~~l 294 (319)
.|+|. +.+ .+.+.++++++|+|+|.+.|+++.++|++||+||||||||+++||+ ++||.||+++|
T Consensus 352 ~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l 431 (454)
T PLN00222 352 EWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIV 431 (454)
T ss_pred ccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHH
Confidence 23332 111 2356789999999999999999999999999999999999999993 89999999999
Q ss_pred HHHHHHHHHhccCCCCC
Q psy11082 295 AALEKDYEEVGMDSVEG 311 (319)
Q Consensus 295 ~~li~~Y~~~~~~~~~~ 311 (319)
++|+++|++++..+.+|
T Consensus 432 ~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 432 ESLVDEYKACESPDYIK 448 (454)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999999988665544
No 9
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.3e-70 Score=534.43 Aligned_cols=284 Identities=33% Similarity=0.576 Sum_probs=256.9
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCC-CcccccccccccccccccCCCCceeeecc
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVEPYNSILTTHTTLEHSDCAFMVDN 80 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~~~~d~~i~~dN 80 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+++++|+|++.. +++++++||++|+|++|.+++|+++++||
T Consensus 126 ~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN 205 (431)
T cd02188 126 GSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDN 205 (431)
T ss_pred cCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecch
Confidence 59999999999999999999999999999999999999999999998653 58899999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCcc
Q psy11082 81 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLV 160 (319)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~ 160 (319)
++|.++|.+.++++.|+|+++|++||+.|++ +|+++||+|.+|.|++++++||||||++||+++
T Consensus 206 ~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~----------------~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~ 269 (431)
T cd02188 206 TALNRIATDRLHIQNPTFDQINSLVSTVMSA----------------STTTLRYPGYMNNDLISLIASLIPTPRLHFLMT 269 (431)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHhccCCC----------------cccceecCCccCCCHHHHHHhcCCCCCceeecc
Confidence 9999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred ccccccchh-hhhcccCCHHHHHHHhcCCCCCceeccC-CCCccceeeeeccccCCccCCCccccc---cC--CCCeecC
Q psy11082 161 TYAPVISAE-KAYHEQLSVMEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAPVGI---NY--QPPTVVP 233 (319)
Q Consensus 161 ~~~Pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~-~~~~~la~~~~~RG~~~~~~i~~~~~~---~~--~~p~~~~ 233 (319)
+++|+.+.. +..++..++.+|++++|++.|+|+.+++ +.++|+|+++++||+..++++.+.+.. .. ..+.|+|
T Consensus 270 s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p 349 (431)
T cd02188 270 SYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGP 349 (431)
T ss_pred ccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCC
Confidence 999998876 4677889999999999999999999998 889999999999999877765543110 00 0122333
Q ss_pred C---------CCc--cceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCC---cchHHHHHHHHHHHHH
Q psy11082 234 G---------GDL--AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEK 299 (319)
Q Consensus 234 ~---------~~~--~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gme---e~eF~ea~~~l~~li~ 299 (319)
. +.+ .+.+.++++++|+|+|.++|+++.++|++||+||||||||+++||| |+||.||+++|++|++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~ 429 (431)
T cd02188 350 ASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIE 429 (431)
T ss_pred CCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHH
Confidence 2 111 2346889999999999999999999999999999999999999999 9999999999999999
Q ss_pred HH
Q psy11082 300 DY 301 (319)
Q Consensus 300 ~Y 301 (319)
+|
T Consensus 430 ~Y 431 (431)
T cd02188 430 EY 431 (431)
T ss_pred hC
Confidence 98
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.9e-69 Score=529.46 Aligned_cols=291 Identities=29% Similarity=0.539 Sum_probs=260.3
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|+|+|+||++.+++++|+|+ ..++++++|||++|+|++|.+++|+++++||+
T Consensus 127 ~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~ 205 (465)
T PTZ00387 127 QCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDND 205 (465)
T ss_pred hccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehH
Confidence 69999999999999999999999999999999999999999999998 46889999999999999999999999999999
Q ss_pred HHHHHhhhccccCC---------------------------CCccchhhHHHHhhccccccccCCCccccccceeeeeec
Q psy11082 82 AIYDICRRNLDIER---------------------------PTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRF 134 (319)
Q Consensus 82 ~l~~~~~~~~~~~~---------------------------~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf 134 (319)
+|.++|.+.++++. ++|+++|++||+.|++ +|++.||
T Consensus 206 aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~----------------~t~~~Rf 269 (465)
T PTZ00387 206 ALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSN----------------LTSSMRF 269 (465)
T ss_pred HHHHHHHhhcCccccccccccccccccccccccccccccccccHHHHHHHHHhhhcc----------------ccceeec
Confidence 99999998887764 8899999999999999 8999999
Q ss_pred CCccchhhhhhhhcCcCCCccccCccccccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCC
Q psy11082 135 DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVV 214 (319)
Q Consensus 135 ~g~~n~dl~~l~~nLvP~P~l~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~ 214 (319)
+|.+|.|++++.+||||||++||++++++|+.+..+..++..+|.+|++++|++.++|+.++|+.++|+|+++++||+..
T Consensus 270 ~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~ 349 (465)
T PTZ00387 270 EGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQN 349 (465)
T ss_pred CCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCC
Confidence 99999999999999999999999999999998876667788999999999999999999999999999999999999987
Q ss_pred ccCCCcccccc---CCCCeecCC--------CCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCC
Q psy11082 215 PKDVNAPVGIN---YQPPTVVPG--------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283 (319)
Q Consensus 215 ~~~i~~~~~~~---~~~p~~~~~--------~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gme 283 (319)
.+++.+.+... -..+.|+|. ....+.+.++++++|+|+|.++|++++++|++||+||||||||+ +|||
T Consensus 350 ~~~v~~~~~~lk~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egme 428 (465)
T PTZ00387 350 VSDVTRNILRLKEQLNMIYWNEDGFKTGLCNVSPLGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLE 428 (465)
T ss_pred hHHHHHHHHHHhccccccccCCCceEEEeeccCCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccc
Confidence 66655431100 001124332 11234568999999999999999999999999999999999999 7999
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCC
Q psy11082 284 EGEFSEAREDLAALEKDYEEVGMDSVE 310 (319)
Q Consensus 284 e~eF~ea~~~l~~li~~Y~~~~~~~~~ 310 (319)
++||.||+++|++|+++|++++.....
T Consensus 429 e~eF~ea~~~l~~li~~Y~~~~~~~~~ 455 (465)
T PTZ00387 429 QAYFDETLETIQNLIDDYAYLQTAEPP 455 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999855433
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.6e-67 Score=506.20 Aligned_cols=274 Identities=31% Similarity=0.630 Sum_probs=247.0
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|.|+|+||++.+.+++|+|++ .++++++|||++|+|++|.+++|+++++||+
T Consensus 95 ~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~ 173 (379)
T cd02190 95 KCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQ 173 (379)
T ss_pred hCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccH
Confidence 699999999999999999999999999999999999999999999996 4888999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|. +|+++|++||+.|++ +|++.||||.+|.|++++.++|||||++||++++
T Consensus 174 ~l~------------~~~~~N~~ia~~i~~----------------~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s 225 (379)
T cd02190 174 ALV------------PFDAMNSIVANLLLN----------------LTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSS 225 (379)
T ss_pred HHH------------HHHHHHHHHHhhhcC----------------ccceeecccccccchhhhccccccCCCceecccc
Confidence 999 799999999999999 8899999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCccccc---cCCCCeecCCC---
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGI---NYQPPTVVPGG--- 235 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~~---~~~~p~~~~~~--- 235 (319)
++|+.+.....++..++.+|++++|++.++|+.++++.++|+++++++||+..+.++.+.+.. ....+.|.|..
T Consensus 226 ~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~~~fv~W~p~~~~~ 305 (379)
T cd02190 226 LSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKI 305 (379)
T ss_pred cccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhccCcCcCcCCCcEEE
Confidence 999988766667889999999999999999999999999999999999998776664433110 00112244421
Q ss_pred -----CccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHh
Q psy11082 236 -----DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 304 (319)
Q Consensus 236 -----~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 304 (319)
.+.+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||+||+++|++++++|+++
T Consensus 306 ~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 306 GLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred eecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 123457899999999999999999999999999999999999999999999999999999999999874
No 12
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=6.5e-66 Score=497.06 Aligned_cols=286 Identities=46% Similarity=0.807 Sum_probs=257.3
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++|+|.|+|+||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||+
T Consensus 85 ~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~ 164 (382)
T cd06059 85 KCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNE 164 (382)
T ss_pred hCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehH
Confidence 69999999999999999999999999999999999999999999999766668999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|.++|.+.+.+..++|.++|++||+.|++ +|++.||+|.++.|+++++++|||||++||++++
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~N~iia~~l~~----------------it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s 228 (382)
T cd06059 165 ALYNILTRQLDIDEPSFDDLNNIIAQIISS----------------ITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPS 228 (382)
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHhhcc----------------cccccccCCCcCCCHHHHhhhcCCCCCceecccc
Confidence 999999998888899999999999999999 8899999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcccc-------c-cCCCCe---
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVG-------I-NYQPPT--- 230 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~-------~-~~~~p~--- 230 (319)
++|+.+.....++..++.+++++++++.+++..++++.++|+++++++||+...+++.+.+. + .|.|+.
T Consensus 229 ~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~~w~p~~~~~ 308 (382)
T cd06059 229 FAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQSWIPDGFKV 308 (382)
T ss_pred ccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 99998876666778899999999999999999999999999999999999987666544310 0 122211
Q ss_pred ecCCCCcc-ceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHH
Q psy11082 231 VVPGGDLA-KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 303 (319)
Q Consensus 231 ~~~~~~~~-~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 303 (319)
+.....+. +.++++++++|+|+|.+.|++++++|++||+||||||||+++||||+||.||+++|++++++|++
T Consensus 309 ~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 309 SNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred EecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 11111122 45789999999999999999999999999999999999999999999999999999999999974
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=3.7e-65 Score=499.15 Aligned_cols=284 Identities=23% Similarity=0.368 Sum_probs=247.1
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||+++||+++||+|||||||+|++|+|+|+|+||++.+.+++|+|+. .+++++|+||++|+|++|.+++|+++++||+
T Consensus 122 ~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~ 200 (446)
T cd02189 122 KCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLEND 200 (446)
T ss_pred hCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHH
Confidence 699999999999999999999999999999999999999999999984 7899999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeec-C-------CccchhhhhhhhcCcCCC
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRF-D-------GALNVDLTEFQTNLVPYP 153 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf-~-------g~~n~dl~~l~~nLvP~P 153 (319)
+|.++|.+.+++++++|+++|++||+.|++ +|++.|| + |.++.|++++.++|||+|
T Consensus 201 al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~----------------~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P 264 (446)
T cd02189 201 DIHRICSKLRNLKNVSLSDINKVIAHQLAS----------------LLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHP 264 (446)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHH----------------HhhHhhccCcccccccccccCCHHHHHhhCcCCC
Confidence 999999999999999999999999999999 6777775 5 336899999999999999
Q ss_pred ccccCccccccccchhhhhcccCCHHHHHHHhc---CCCCCcee-------------------ccCCCCccceeeeeccc
Q psy11082 154 RIHFPLVTYAPVISAEKAYHEQLSVMEITNACF---EPANQMVK-------------------CDPRHGKYMACCMLYRG 211 (319)
Q Consensus 154 ~l~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~~~---~~~n~~~~-------------------~~~~~~~~la~~~~~RG 211 (319)
++||++++++|+++..+..++.++|.+|+++++ .+.+.+.. ++++.++||++++++||
T Consensus 265 ~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG 344 (446)
T cd02189 265 AYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRG 344 (446)
T ss_pred CceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccccccccccccccccccCCcccceeeeeeeeeC
Confidence 999999999999887666788899999999876 45555544 45678999999999999
Q ss_pred cCCccCCCccccccCCCCeecCC----------CCccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCC
Q psy11082 212 DVVPKDVNAPVGINYQPPTVVPG----------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 281 (319)
Q Consensus 212 ~~~~~~i~~~~~~~~~~p~~~~~----------~~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~G 281 (319)
+...+++...+.-.-..+.|+|. ..+.+.++++++++|+|+|.+.|++++++|++||+||||||||+++|
T Consensus 345 ~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~G 424 (446)
T cd02189 345 KDVTSADERKFRDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYG 424 (446)
T ss_pred CCchHHHHHHHhccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccC
Confidence 87665543321100011113321 11224578999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHH
Q psy11082 282 MEEGEFSEAREDLAALEKDYE 302 (319)
Q Consensus 282 mee~eF~ea~~~l~~li~~Y~ 302 (319)
|||+||.||+++|++++++|+
T Consensus 425 mee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 425 LEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999996
No 14
>KOG1374|consensus
Probab=100.00 E-value=2.8e-63 Score=456.24 Aligned_cols=289 Identities=32% Similarity=0.545 Sum_probs=256.2
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCC-CCcccccccccccccccccCCCCceeeecc
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDN 80 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN 80 (319)
.||+|+||+++||++||||||+||.|+|+|+|+|||+.+.+.+|||... .+|+||||||++|+|++|++.+|+++++||
T Consensus 128 ~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN 207 (448)
T KOG1374|consen 128 GSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDN 207 (448)
T ss_pred CCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEecc
Confidence 6999999999999999999999999999999999999999999999853 799999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCcc
Q psy11082 81 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLV 160 (319)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~ 160 (319)
.||.++|.+++.+++|+|+++|+++|..|++ .|.++||||++++++..|...|+|+|++||+++
T Consensus 208 ~AL~ria~~~l~i~~ptF~~iNqLvstims~----------------st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~ 271 (448)
T KOG1374|consen 208 TALHRIAADRLHIQNPTFSQINQLVSTIMSA----------------STTTLRYPGYMNNDLIGLYASLIPTPELHFLMT 271 (448)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh----------------ccccccchhhccCcHHHHHhhcCCCCCeeeeec
Confidence 9999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ccccccchhhhh--cccCCHHHHHHHhcCCCCCceeccC-C--CCccceeeeeccccCCccCCCcc------ccccCCCC
Q psy11082 161 TYAPVISAEKAY--HEQLSVMEITNACFEPANQMVKCDP-R--HGKYMACCMLYRGDVVPKDVNAP------VGINYQPP 229 (319)
Q Consensus 161 ~~~Pl~~~~~~~--~~~~~~~~l~~~~~~~~n~~~~~~~-~--~~~~la~~~~~RG~~~~~~i~~~------~~~~~~~p 229 (319)
+++|+++..... .+..++.|.++.++.++|+|++..+ . ...|++...++.|.+.+.++.+. ...-+++|
T Consensus 272 ~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~ 351 (448)
T KOG1374|consen 272 GYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIP 351 (448)
T ss_pred cCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCC
Confidence 999999876553 3677888999999999999988765 2 34789999999999887665544 11111211
Q ss_pred eecCC---------CC--ccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcc---hHHHHHHHHH
Q psy11082 230 TVVPG---------GD--LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLA 295 (319)
Q Consensus 230 ~~~~~---------~~--~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~---eF~ea~~~l~ 295 (319)
|-|. +. -..++.|+.+++|+|+|...|++++.+||+|++||||||+|+++||+++ ||.|+++.|+
T Consensus 352 -w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq 430 (448)
T KOG1374|consen 352 -WGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQ 430 (448)
T ss_pred -CCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH
Confidence 2111 11 0235789999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHhccC
Q psy11082 296 ALEKDYEEVGMD 307 (319)
Q Consensus 296 ~li~~Y~~~~~~ 307 (319)
+++++|..+++.
T Consensus 431 ~lv~eY~a~~~~ 442 (448)
T KOG1374|consen 431 QLVDEYHAAEQP 442 (448)
T ss_pred HHHHHHHhhcCc
Confidence 999999988754
No 15
>KOG1375|consensus
Probab=100.00 E-value=6.8e-59 Score=427.52 Aligned_cols=273 Identities=37% Similarity=0.722 Sum_probs=243.6
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.||++|||+++||+|||||||+|.++++.++++||..++.+++|.|+++ ++++++|||+.|++.+|++++|.++++||+
T Consensus 71 ~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNe 149 (369)
T KOG1375|consen 71 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNE 149 (369)
T ss_pred ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccH
Confidence 4999999999999999999999999999999999999999999999977 999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|+++|.+.++++.++ + .|.++||+|++|.|++++..|++|+|++||++++
T Consensus 150 al~dic~~~lkl~~~~-------------g----------------~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g 200 (369)
T KOG1375|consen 150 ALYDICFRTLKLKTPS-------------G----------------VTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPG 200 (369)
T ss_pred HHHHHHhhhhcccCCC-------------C----------------ceeecccccccchhhhhhhhccCCCcchhhcccc
Confidence 9999999998888777 5 7889999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCccc-cccCCC----CeecCCC-
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV-GINYQP----PTVVPGG- 235 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~-~~~~~~----p~~~~~~- 235 (319)
++|+++....+++.+++.+++++.|+.+|++..++ |++++.++|| +.++++++. .+-+.. -.|+|+.
T Consensus 201 ~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~v 273 (369)
T KOG1375|consen 201 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNV 273 (369)
T ss_pred ccccccccccccccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhccccc
Confidence 99999999889999999999999999999998776 9999999999 666766651 111000 0122221
Q ss_pred -------CccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHh-ccC
Q psy11082 236 -------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-GMD 307 (319)
Q Consensus 236 -------~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~-~~~ 307 (319)
+..+.+.+.+.++|+|+|.+.|+++.++|.+||+||||||||+++||||+||+||..++++++.+|+++ +..
T Consensus 274 ktavCdipp~glkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~ 353 (369)
T KOG1375|consen 274 KTAVCDIPPGGLKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDA 353 (369)
T ss_pred ceeeccCCCccccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhc
Confidence 113457889999999999999999999999999999999999999999999999999999999999999 444
Q ss_pred CCCC
Q psy11082 308 SVEG 311 (319)
Q Consensus 308 ~~~~ 311 (319)
..++
T Consensus 354 ~~~~ 357 (369)
T KOG1375|consen 354 TAEE 357 (369)
T ss_pred cccc
Confidence 4443
No 16
>KOG1376|consensus
Probab=100.00 E-value=1.8e-57 Score=416.68 Aligned_cols=274 Identities=92% Similarity=1.399 Sum_probs=258.2
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.|..||||++|||+|||||||+++.++|.|..+|+|+..+.++++|.+..++.+++|||++|+-+...+++|+++++||+
T Consensus 127 ~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdne 206 (407)
T KOG1376|consen 127 LCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNE 206 (407)
T ss_pred hhccccceEEEEeccCCCcCCccchhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCch
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+.+++|.+.+.+.+|+|.++|++|+|.+++ +|+++||.|.+|.||.++++||||+| +
T Consensus 207 a~Ydicr~~l~i~rPtyt~lnr~i~qVvSs----------------itaSlrf~g~lnvdl~efqTnlVpyp----l--- 263 (407)
T KOG1376|consen 207 AIYDICRRNLDIERPTYTNLNRLIAQVVSS----------------ITASLRFDGALNVDLTEFQTNLVPYP----L--- 263 (407)
T ss_pred hhcchhhhccccCCccccchhhhHHhhhcc----------------cccccccCCcccccHHHHHhhCCCCc----c---
Confidence 999999999999999999999999999999 99999999999999999999999999 2
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCccccccCCC--C----eecCCC
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQP--P----TVVPGG 235 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~~~~~~~~--p----~~~~~~ 235 (319)
++|+.+..+..++++++.+++.++|+..|||++|||+.|||+++++++||++.+++++.++...+.. + ..+|+.
T Consensus 264 yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg 343 (407)
T KOG1376|consen 264 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDTVVPGG 343 (407)
T ss_pred cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhccCCcCcccchHHHHhhhhccccccceeeccCc
Confidence 8898888888899999999999999999999999999999999999999999999988773322211 1 467888
Q ss_pred CccceeeeccccccchHHHHHHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHH
Q psy11082 236 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 298 (319)
Q Consensus 236 ~~~~~~~s~~~l~N~t~i~~~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li 298 (319)
.+.++.+..++++|+|+|.+.+.++-.+|+.||.||||+|||.++||||.||.||++.|..|.
T Consensus 344 ~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 344 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCccccchhhhhhhHHhhc
Confidence 888899999999999999999999999999999999999999999999999999999987763
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=5.4e-42 Score=324.70 Aligned_cols=203 Identities=50% Similarity=0.885 Sum_probs=187.7
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++|||+++||+|||||||+|++++|+|||+||++.+++++|+|+...+ +++++||++|++++|.+++|+++++||+
T Consensus 85 ~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~ 163 (328)
T cd00286 85 ECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNE 163 (328)
T ss_pred hCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecch
Confidence 699999999999999999999999999999999999999999999996444 6999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccccCccc
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT 161 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~~ 161 (319)
+|.++|.+.+....+.|.++|++||+.|++ +|.++||+|.+|.|++++.++|+|+|++||++++
T Consensus 164 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~----------------~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~ 227 (328)
T cd00286 164 ALFDICPRPLHIDKPTFDHINELLATALSS----------------LTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVG 227 (328)
T ss_pred hHHHHhHHhcCCCCCCHHHHHHHHHhhccc----------------cccccccCccccchHHHHhhhcCCCCCceeeccc
Confidence 999999988888889999999999999999 8999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc
Q psy11082 162 YAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP 221 (319)
Q Consensus 162 ~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~ 221 (319)
++|+.......+...+..+++++++++.++++.++++.++++++++++||....+++.+.
T Consensus 228 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~v~~~ 287 (328)
T cd00286 228 YAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREG 287 (328)
T ss_pred cCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCChHHHHHH
Confidence 999987555556678899999999999999988888889999999999998866655443
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.93 E-value=7.1e-26 Score=222.72 Aligned_cols=281 Identities=18% Similarity=0.207 Sum_probs=190.7
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCC----CcccccccccccccccccCCCCceee
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV----STAVVEPYNSILTTHTTLEHSDCAFM 77 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~~~~d~~i~ 77 (319)
+||++|||++++|++||| ||+|+.++|+|+||||++.++++++.|.+.. .+.++++||++|++.+|.+++|.++|
T Consensus 147 eCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vP 225 (493)
T cd06060 147 ECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVP 225 (493)
T ss_pred hCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEE
Confidence 699999999999999999 9999999999999999999999999997532 25789999999999999999999999
Q ss_pred eccHH-HHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcCCCccc
Q psy11082 78 VDNEA-IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 156 (319)
Q Consensus 78 ~dN~~-l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~ 156 (319)
+.-.. .+.............|+.-+.+.+.. ++|+++. ++|.+.|..+.. .++.+++..|.+..+ |
T Consensus 226 l~~~~~~w~~~~~p~~~~~l~~d~~~~~htSA---llA~ald--------T~TLp~Rl~~~~-~~m~~l~~~l~~~gR-k 292 (493)
T cd06060 226 LSLSGTLWRKPGPPRTFPYLNYDAELPYHTSA---LLATALD--------TLTLPYRLKSSP-SSLSGLCDDLSFSGR-K 292 (493)
T ss_pred EecccccccCCCCCCCCcccccCCCCchHHHH---HHHHHHh--------hccccceeccCC-ccHHHHHHHhhhccc-h
Confidence 99432 22221111122334455555544332 3333333 288888987643 578899999987655 5
Q ss_pred cCcccc-ccccchhhhhcccCCHHHHHHHhcCCCCCc-eecc-CCCCccceeeeeccccCCcc---------CCCcc---
Q psy11082 157 FPLVTY-APVISAEKAYHEQLSVMEITNACFEPANQM-VKCD-PRHGKYMACCMLYRGDVVPK---------DVNAP--- 221 (319)
Q Consensus 157 fl~~~~-~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~-~~~~-~~~~~~la~~~~~RG~~~~~---------~i~~~--- 221 (319)
+...+. .|+.... .-+..++...+-+...+. +.++ .....++++.+++||....+ +..++
T Consensus 293 i~~~~~a~P~p~~~-----~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~ 367 (493)
T cd06060 293 VVAAGLALPFPMVG-----GQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYA 367 (493)
T ss_pred hhhhccCCCCCCCC-----CCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchh
Confidence 555443 5654321 123444444332222111 1222 23468899999999976221 11110
Q ss_pred ----------------------ccccCCC-CeecCCCC-c------------------c--cee--eeccccccchHHHH
Q psy11082 222 ----------------------VGINYQP-PTVVPGGD-L------------------A--KVQ--RAVCMLSNTTAIAE 255 (319)
Q Consensus 222 ----------------------~~~~~~~-p~~~~~~~-~------------------~--~~~--~s~~~l~N~t~i~~ 255 (319)
+.++..| |...|.+. | . .++ +.++-+.+++.+.+
T Consensus 368 c~s~~~~l~~y~~~~~~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~ 447 (493)
T cd06060 368 CSSVEEMLQLYLQCQYPGSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGE 447 (493)
T ss_pred cCCHHHHHHHHHHhccCCcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHH
Confidence 1111111 11111111 0 0 022 46777899999999
Q ss_pred HHHHHHHHHHHHhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHH
Q psy11082 256 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 303 (319)
Q Consensus 256 ~l~~~~~~f~~~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 303 (319)
.|+.++.++.++--+| .|.|.+.|+|+|||+|+.++|.++.+.|++
T Consensus 448 ~l~~l~~~~~kl~~~r--~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 448 MLESLHRQLSKLDLRR--KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred HHHHHHHHHHhhhhHh--hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999998777 889999999999999999999999999963
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.89 E-value=1.4e-24 Score=190.74 Aligned_cols=109 Identities=40% Similarity=0.695 Sum_probs=102.2
Q ss_pred ccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHHHH
Q psy11082 7 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 86 (319)
Q Consensus 7 ~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~~~ 86 (319)
++|+++||+|||||||+++++++.++ +||+.. .+++|+|+ ..|.++++||++++|++|.+++|.++++||++|.++
T Consensus 84 d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~ 159 (192)
T smart00864 84 DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDI 159 (192)
T ss_pred CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHH
Confidence 99999999999999999999999999 999876 99999995 478899999999999999999999999999999999
Q ss_pred hhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCC
Q psy11082 87 CRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDG 136 (319)
Q Consensus 87 ~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g 136 (319)
|.+++.+ .+.|+++|++|++.|++ +|+++||||
T Consensus 160 ~~~~~~~-~~~~~~~N~~i~~~i~~----------------i~~~~rf~g 192 (192)
T smart00864 160 CGRNLPI-RPAFKDANDLLAQAVSG----------------ITDLIRFPG 192 (192)
T ss_pred HhccCCc-hHHHHHHHHHHHHHHHH----------------HHHHHcCCC
Confidence 9887766 68999999999999999 888899886
No 20
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.89 E-value=2.4e-24 Score=192.60 Aligned_cols=96 Identities=43% Similarity=0.796 Sum_probs=91.2
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
+||++++|+++||||||||||++++|++.||++||++.+.+++|+|+ .. ++++++||++++|++|.+++|++|+|||+
T Consensus 120 ~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~ 197 (216)
T PF00091_consen 120 KCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDND 197 (216)
T ss_dssp TSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHH
T ss_pred cccccccceecccccceeccccccccchhhhccccccceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHH
Confidence 69999999999999999999999999999999999999999999999 44 88999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCcc
Q psy11082 82 AIYDICRRNLDIERPTYT 99 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~ 99 (319)
+|.++|.+++++++|+|+
T Consensus 198 ~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 198 ALYKICKNQLGIENPAFN 215 (216)
T ss_dssp HHHHHHHHTSSHSSHHHH
T ss_pred HHHHHHhccCCCCCCCcC
Confidence 999999999999888775
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.86 E-value=8.3e-23 Score=194.57 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=119.8
Q ss_pred CCCC--cccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeec
Q psy11082 2 SVMG--LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 79 (319)
Q Consensus 2 ~CD~--l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~d 79 (319)
.||. +|+|+|+||||||||||+++.+++.++++|+ +++++++++|+. .+.++++||+++++++|.+++|++++||
T Consensus 92 ~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~d 168 (349)
T cd02202 92 DRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFD 168 (349)
T ss_pred ccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEe
Confidence 4776 9999999999999999999999999999999 789999999996 4459999999999999999999999999
Q ss_pred cHHHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeec-----CCccchhhhhhhhcCcCCCc
Q psy11082 80 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRF-----DGALNVDLTEFQTNLVPYPR 154 (319)
Q Consensus 80 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf-----~g~~n~dl~~l~~nLvP~P~ 154 (319)
|++|.++|.. + .+.|+++|++|++.|++ ++...|| +|.+|.|++++.++|-..
T Consensus 169 Nd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~----------------l~~~~r~~~~~~~g~invD~~dv~~~L~~~-- 226 (349)
T cd02202 169 NDAWKRKGES---V-EEAYDRINEEIARRIGL----------------LLRAGEANAGDSVGESVLDASEVINTLSGG-- 226 (349)
T ss_pred hHHHhhhccc---h-HHHHHHHHHHHHHHHHH----------------HHHhhhcccCCCCCeEeccHHHHHHHhccC--
Confidence 9999998742 2 37999999999999999 7778888 999999999999999764
Q ss_pred cccCcccc
Q psy11082 155 IHFPLVTY 162 (319)
Q Consensus 155 l~fl~~~~ 162 (319)
.+.+.++
T Consensus 227 -G~~~iG~ 233 (349)
T cd02202 227 -GFATIGY 233 (349)
T ss_pred -CeEEEEE
Confidence 3444444
No 22
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.85 E-value=4.3e-22 Score=186.27 Aligned_cols=120 Identities=20% Similarity=0.350 Sum_probs=108.2
Q ss_pred cceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHHHHh
Q psy11082 8 GFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 87 (319)
Q Consensus 8 gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~~~~ 87 (319)
.|+|++|||||||||+++.+++.++++|+ .+++|+|.|...|..+++||+.+++++|.+++|++++|||++|.++|
T Consensus 87 ~v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~ 162 (303)
T cd02191 87 MVFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG 162 (303)
T ss_pred EEEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHh
Confidence 59999999999999999999999999986 45555555555778999999999999999999999999999999999
Q ss_pred hhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcC
Q psy11082 88 RRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNL 149 (319)
Q Consensus 88 ~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nL 149 (319)
.+ +.+. ..|+.+|++|++.+++ ++...|+||.+|.|++++.+.|
T Consensus 163 ~~-~~~~-~af~~~N~~ia~~i~~----------------it~~i~~~g~invD~~dv~~~l 206 (303)
T cd02191 163 EK-ASLE-GAFDHADEVLVRAVGG----------------LFGAIEIEGEINVDFADVKNVM 206 (303)
T ss_pred hc-CChH-HHHHHHHHHHHHHHHH----------------HHHhhccCCcccCCHHHHHHHh
Confidence 76 7775 5999999999999999 8888999999999999998766
No 23
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.79 E-value=2.9e-20 Score=176.75 Aligned_cols=123 Identities=14% Similarity=0.271 Sum_probs=104.9
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.||. ++|++|||||||||+++.+++.++ +|+ +..+++.++|+ ..|..+++||+.+++++|.+++|++++|||+
T Consensus 101 ~~D~---vfI~aglGGGTGSG~apvia~~ak-e~~-~l~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd 173 (349)
T TIGR00065 101 GADM---VFITAGMGGGTGTGAAPVVAKIAK-ELG-ALTVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPND 173 (349)
T ss_pred CCCE---EEEEEeccCccchhHHHHHHHHHH-HcC-CCEEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCH
Confidence 3555 599999999999999986666655 565 34445555555 4777999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcC
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNL 149 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nL 149 (319)
+|.++|.+ +.+. ..|+.+|++|++.+.+ +|..+|++|.+|.|+.++.+-|
T Consensus 174 ~L~~~~~~-~~i~-~af~~~N~iia~~i~~----------------it~~ir~~g~iNvDf~dv~~vl 223 (349)
T TIGR00065 174 KLLEVVPN-LPLN-DAFKVADDVLVRAVKG----------------ISELITKPGLINIDFADVRAVM 223 (349)
T ss_pred HHHHhhcC-CCHH-HHHHHHHHHHHHHHHh----------------HHHhhccCCcCcCCHHHHHHHH
Confidence 99999977 7775 4999999999999999 8899999999999999998866
No 24
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.78 E-value=6.9e-20 Score=171.85 Aligned_cols=126 Identities=17% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.||. ++|++|||||||||+++.+++..+ +|+. ..+++.+.|+ ..|..+++||+.+++++|.+++|+++++||+
T Consensus 84 ~~d~---v~i~aglGGGTGSG~ap~ia~~a~-e~g~-~~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~ 156 (304)
T cd02201 84 GADM---VFITAGMGGGTGTGAAPVIAKIAK-EMGA-LTVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPND 156 (304)
T ss_pred CCCE---EEEeeccCCCcchhHHHHHHHHHH-HcCC-CEEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecH
Confidence 3555 599999999999999999776555 5663 4555555665 3677899999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcC
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVP 151 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP 151 (319)
+|.++|.+.+.+.. .|+.+|++|++.+++ +|..+|++|.+|.|+.++.+.|-.
T Consensus 157 ~L~~~~~~~~~i~~-af~~~n~~ia~~i~~----------------it~~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 157 KLLEVVDKNLPLLE-AFKLADDVLAQAVKG----------------ISDLITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HHHHhhccCCCHHH-HHHHHHHHHHHHHHH----------------HHHHhccCccccCCHHHHHHHhcc
Confidence 99999987777765 899999999999999 889999999999999999887753
No 25
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.76 E-value=2.6e-19 Score=171.16 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=109.8
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccH
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 81 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~ 81 (319)
.||. |+|++|||||||||+++.|++.+++ ++ ....++++.|+. .|...+..|+.+++++|.+++|++++|||+
T Consensus 112 ~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd 184 (378)
T PRK13018 112 GADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNN 184 (378)
T ss_pred CCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecH
Confidence 3555 9999999999999999999999986 54 456788899985 566889999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcC
Q psy11082 82 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNL 149 (319)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nL 149 (319)
+|.++| +.+.+. ..|+.+|++|++.+.+ +|..+|++|.+|.|++++.+-|
T Consensus 185 ~L~~i~-~~~~i~-~af~~~N~iIa~~I~~----------------It~~i~~~G~iN~Df~dv~~vl 234 (378)
T PRK13018 185 RLLDIV-PNLPIA-DAFSVADEVIAETVKG----------------ITETITKPSLINLDFADVKSVM 234 (378)
T ss_pred HHHHHH-hcCCHH-HHHHHHHHHHHHHHHh----------------hhhhcccCCceecCHHHHHHHh
Confidence 999999 767776 4899999999999999 8899999999999999998866
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.70 E-value=4.5e-18 Score=139.60 Aligned_cols=105 Identities=55% Similarity=0.958 Sum_probs=85.3
Q ss_pred CccccCccccccccchhhhhcccCCHHHHHHHhcCCCCCceeccCCCCccceeeeeccccCCccCCCcc-----------
Q psy11082 153 PRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP----------- 221 (319)
Q Consensus 153 P~l~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~~~i~~~----------- 221 (319)
|++||++++++|+....+..++..+..||++++|+++|+|+++++++|+|||+++++||++..+|+++.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 899999999999999887788999999999999999999999999999999999999999988776665
Q ss_pred ----------ccccCCCCeecCCCCccceeeeccccccchHHHHHHHHHHH
Q psy11082 222 ----------VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 262 (319)
Q Consensus 222 ----------~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~~~~ 262 (319)
+++|..||...+.+ +.++++|+|+|+|.+.|+++..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 33344444333322 4679999999999999999863
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=99.67 E-value=1.1e-17 Score=160.15 Aligned_cols=123 Identities=18% Similarity=0.329 Sum_probs=105.0
Q ss_pred ccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHHHH
Q psy11082 7 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 86 (319)
Q Consensus 7 ~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~~~ 86 (319)
+-++|+++||||||||.++. +..+..||+ +++++|+|.|...|..+++||+.++|++|.+++|++|+++|++|.++
T Consensus 99 D~vfI~AGmGGGTGTGaapv-IA~iake~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~ 174 (384)
T PRK09330 99 DMVFITAGMGGGTGTGAAPV-VAEIAKELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEV 174 (384)
T ss_pred CEEEEEecCCCcccHHHHHH-HHHHHHHcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhh
Confidence 34589999999999999995 555666776 45666666555688899999999999999999999999999999999
Q ss_pred hhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCc
Q psy11082 87 CRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLV 150 (319)
Q Consensus 87 ~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLv 150 (319)
+.+.+.+.. .|+.+|.++++.+.+ ++..+++||.+|.|+.++.+-|-
T Consensus 175 ~~~~~~l~~-Af~~ad~vL~~~v~~----------------It~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 175 VDKKTPLLD-AFKAADDVLRQAVQG----------------ITDLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred ccCCCCHHH-HHHHHHHHHHHHHHH----------------HHHHHhcCCcccCCHHHHHHHHh
Confidence 987777764 899999999999999 88889999999999988877653
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.33 E-value=7.1e-13 Score=115.04 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=64.2
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcc-eeEEEecCCCCCc-----ccccccccccccccccCCCCce
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSK-LEFAIYPAPQVST-----AVVEPYNSILTTHTTLEHSDCA 75 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~~~~d~~ 75 (319)
+||++||||++..+.+|.| |+++.++|+|||||||+.+ +.+.+.+...... ...+.+|.++++.+|.+.|+.+
T Consensus 70 ECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~ 148 (180)
T PF14881_consen 70 ECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLF 148 (180)
T ss_pred HcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEE
Confidence 6999999999999999997 9999999999999999985 5555544322111 1245689999999999999999
Q ss_pred eeec
Q psy11082 76 FMVD 79 (319)
Q Consensus 76 i~~d 79 (319)
+|+.
T Consensus 149 vPl~ 152 (180)
T PF14881_consen 149 VPLS 152 (180)
T ss_pred EecC
Confidence 9998
No 29
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=98.93 E-value=3.5e-10 Score=106.59 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=102.8
Q ss_pred CcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHH
Q psy11082 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY 84 (319)
Q Consensus 5 ~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~ 84 (319)
..+-++++.+||||||+|..+.+++.+++ ......+++++|+. .|...+.-|+..++..|.+++|.+|+++|+.|.
T Consensus 95 g~dmvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll 170 (338)
T COG0206 95 GADMVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMENAEEGIEELREVVDTLIVIPNDKLL 170 (338)
T ss_pred cCCeEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHHHHHHHHHHHHhCCcEEEEecHHHH
Confidence 34446788999999999999999999997 56678889999996 555788889999999999999999999999999
Q ss_pred HHhhhccccCCCCccchhhHHHHhhccccccccCCCccccccceeeeeecCCccchhhhhhhhcCcC
Q psy11082 85 DICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVP 151 (319)
Q Consensus 85 ~~~~~~~~~~~~~~~~~N~~ia~~i~~~~~~~~~p~~~~~~~~~t~~~Rf~g~~n~dl~~l~~nLvP 151 (319)
+... ...+. ..|...|.++++.+.+ ++.-+--||.+|.|+.++.+-+-.
T Consensus 171 ~~~~-~~~~~-~Af~~ad~vl~~~v~~----------------i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 171 KGKD-KTPIA-EAFNEADDVLGNAVKG----------------ITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred hccC-cccHH-HHHHHHHHHHHHHHHH----------------HHHHhccCceEeecHHHHHHHHhc
Confidence 8764 32332 3677889999999888 555555668899999888876655
No 30
>KOG2530|consensus
Probab=98.88 E-value=1.5e-09 Score=103.44 Aligned_cols=77 Identities=26% Similarity=0.422 Sum_probs=66.8
Q ss_pred CCCCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCC-Cccccc------ccccccccccccCCCCc
Q psy11082 2 SVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-STAVVE------PYNSILTTHTTLEHSDC 74 (319)
Q Consensus 2 ~CD~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~-~~~~~~------~yN~~lsl~~l~~~~d~ 74 (319)
+||.+|||++...+.+|+| |+++.++|.|+|||+++.+.+.++.|.+.. ++.... ..|.+|++.+|.+.|+.
T Consensus 200 ECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l 278 (483)
T KOG2530|consen 200 ECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSL 278 (483)
T ss_pred hcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcce
Confidence 7999999999999999986 999999999999999999999998885432 222222 45799999999999999
Q ss_pred eeeec
Q psy11082 75 AFMVD 79 (319)
Q Consensus 75 ~i~~d 79 (319)
.+|+.
T Consensus 279 ~~PL~ 283 (483)
T KOG2530|consen 279 YFPLS 283 (483)
T ss_pred eeccc
Confidence 99987
No 31
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=96.92 E-value=9.2e-05 Score=59.08 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=68.5
Q ss_pred cchhhhhhhhcCcCCCccccCccccccccchhhhhcccCCHHHHHH--HhcCCCCCceeccCCCCccceeeeeccccCCc
Q psy11082 138 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITN--ACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 215 (319)
Q Consensus 138 ~n~dl~~l~~nLvP~P~l~fl~~~~~Pl~~~~~~~~~~~~~~~l~~--~~~~~~n~~~~~~~~~~~~la~~~~~RG~~~~ 215 (319)
+|.|++++.++|+|+| |++.+++|.... .+..+..+++. .+++..+++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4679999999999999 899999998652 33445667666 7788777765554442 666543 3444
Q ss_pred cCCCccccc---c---CCCCeecCCCCccceeeecccccc-chHHHHHHHHHH
Q psy11082 216 KDVNAPVGI---N---YQPPTVVPGGDLAKVQRAVCMLSN-TTAIAEAWARLD 261 (319)
Q Consensus 216 ~~i~~~~~~---~---~~~p~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~~~ 261 (319)
+++.+.+.. . ..-+.|.+.... +...+.+.+.| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~-~~~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDE-ELGGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCC-cCCCCcEEEEEEecccCccccccC
Confidence 444443110 0 111224441111 12245678999 999999888753
No 32
>PF13809 Tubulin_2: Tubulin like
Probab=95.80 E-value=0.0084 Score=57.44 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=34.7
Q ss_pred ceEEeecCCCccCChHHHHHHHhhhhh-----CCCcceeEEEecCC
Q psy11082 9 FLIFHSFGGGTGSGFTSLLMERLSVDY-----GKKSKLEFAIYPAP 49 (319)
Q Consensus 9 f~i~~Sl~GGTGSG~gs~l~e~l~dey-----~~~~~~~~~v~P~~ 49 (319)
++|+.||+||||||+--=++-.||+.+ ....+..+.++|..
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~ 195 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDA 195 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcc
Confidence 678899999999999999999999876 34568889999983
No 33
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=69.38 E-value=4.5 Score=33.09 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCccCChHHHHHHHhhhhhCC-CcceeEE
Q psy11082 17 GGTGSGFTSLLMERLSVDYGK-KSKLEFA 44 (319)
Q Consensus 17 GGTGSG~gs~l~e~l~dey~~-~~~~~~~ 44 (319)
.|-|.|+|..+++.||.++|+ ..+++..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 345668999999999999998 5555554
No 34
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=47.30 E-value=24 Score=31.60 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEeecCCCccCChHHHHHHHhhhhhCCC
Q psy11082 11 IFHSFGGGTGSGFTSLLMERLSVDYGKK 38 (319)
Q Consensus 11 i~~Sl~GGTGSG~gs~l~e~l~dey~~~ 38 (319)
++=+++||+|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 4568999999999 56788899998854
No 35
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=41.72 E-value=17 Score=31.10 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=35.0
Q ss_pred ccchHHHHHHHHHHHHHHH--HhhccceeeecccCCCCcchHHHHHHHHHHHHHHHHHhcc
Q psy11082 248 SNTTAIAEAWARLDHKFDL--MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 306 (319)
Q Consensus 248 ~N~t~i~~~l~~~~~~f~~--~~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~ 306 (319)
..-.-|+..+.++.+-+.+ =|..-.||+||..|+.||+ ..+.++++.++-+++
T Consensus 92 ehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag~ 146 (167)
T COG1528 92 EHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEE------KLFKTILDKLELAGN 146 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Confidence 3444566666666655544 4677789999999998764 445566666655554
No 36
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=36.05 E-value=11 Score=31.12 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=18.9
Q ss_pred hhccceeeecccCCCCcchHHHHHHHHHHHH
Q psy11082 268 YAKRAFVHWYVGEGMEEGEFSEAREDLAALE 298 (319)
Q Consensus 268 ~~~kAflH~Y~~~Gmee~eF~ea~~~l~~li 298 (319)
-+|++|| ++-|+.++|++||+....+-.
T Consensus 24 ~~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 4567777 455999999999999877665
No 37
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=30.46 E-value=36 Score=20.57 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=8.1
Q ss_pred CCCccCChHHHHHH
Q psy11082 16 GGGTGSGFTSLLME 29 (319)
Q Consensus 16 ~GGTGSG~gs~l~e 29 (319)
..|+|||+ +.+.+
T Consensus 11 tSGSGSG~-p~Lvq 23 (30)
T smart00467 11 TSGSGSGL-PLLVQ 23 (30)
T ss_pred cCCCCCCc-hhHHH
Confidence 56778887 34443
No 38
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.05 E-value=32 Score=32.65 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=42.1
Q ss_pred cCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHHHHhhhccc
Q psy11082 15 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 92 (319)
Q Consensus 15 l~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~~~~~~~~~ 92 (319)
|+||+|+-+ =..=|++|||-.+ =+.. +.+..| +|++.+..|.. .+-++++.|+....+..+++.
T Consensus 7 laGG~GsRL----WPLSR~~~PKQFl----~L~~---~~Sllq--~T~~R~~~l~~-~~~~~vVtne~~~f~v~eql~ 70 (333)
T COG0836 7 LAGGSGSRL----WPLSRKDYPKQFL----KLFG---DLSLLQ--QTVKRLAFLGD-IEEPLVVTNEKYRFIVKEQLP 70 (333)
T ss_pred EeCCCcccc----CCcCcccCCccce----eeCC---CCcHHH--HHHHHHhhcCC-ccCeEEEeCHHHHHHHHHHHh
Confidence 678776544 3335888998521 1111 334555 67778888777 677889999998887766544
No 39
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.85 E-value=47 Score=19.30 Aligned_cols=13 Identities=46% Similarity=1.107 Sum_probs=9.2
Q ss_pred CCCccCChHHHHH
Q psy11082 16 GGGTGSGFTSLLM 28 (319)
Q Consensus 16 ~GGTGSG~gs~l~ 28 (319)
|||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5778888876553
No 40
>PTZ00301 uridine kinase; Provisional
Probab=26.55 E-value=37 Score=30.08 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=15.5
Q ss_pred EEeecCCCccCChHHHHHHHhhhh
Q psy11082 11 IFHSFGGGTGSGFTSLLMERLSVD 34 (319)
Q Consensus 11 i~~Sl~GGTGSG~gs~l~e~l~de 34 (319)
++=+++||+|||=++. ++.|.++
T Consensus 4 ~iIgIaG~SgSGKTTl-a~~l~~~ 26 (210)
T PTZ00301 4 TVIGISGASGSGKSSL-STNIVSE 26 (210)
T ss_pred EEEEEECCCcCCHHHH-HHHHHHH
Confidence 5668999999997654 4444433
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=26.05 E-value=84 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.5
Q ss_pred cCChHHHHHHHhhhhhCCCcc
Q psy11082 20 GSGFTSLLMERLSVDYGKKSK 40 (319)
Q Consensus 20 GSG~gs~l~e~l~dey~~~~~ 40 (319)
|.|+|..|+..+.+.++...+
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i 60 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKI 60 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEE
T ss_pred CCCHHHHHHHHHHHHcCCCcE
Confidence 468999999999999976544
No 42
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=41 Score=29.98 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=14.8
Q ss_pred CCccCChHHHHHHHhhh
Q psy11082 17 GGTGSGFTSLLMERLSV 33 (319)
Q Consensus 17 GGTGSG~gs~l~e~l~d 33 (319)
=|||||+-+.++.+|-.
T Consensus 79 IGtGsGY~aAvla~l~~ 95 (209)
T COG2518 79 IGTGSGYQAAVLARLVG 95 (209)
T ss_pred ECCCchHHHHHHHHHhC
Confidence 48999999999998865
No 43
>PRK07831 short chain dehydrogenase; Provisional
Probab=25.84 E-value=41 Score=29.99 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCccCChHHHHHHHhhhh
Q psy11082 16 GGGTGSGFTSLLMERLSVD 34 (319)
Q Consensus 16 ~GGTGSG~gs~l~e~l~de 34 (319)
.||+|+|+|..+++.|.++
T Consensus 23 tG~sg~gIG~~ia~~l~~~ 41 (262)
T PRK07831 23 TAAAGTGIGSATARRALEE 41 (262)
T ss_pred ECCCcccHHHHHHHHHHHc
Confidence 4788889999999999865
No 44
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=24.87 E-value=43 Score=25.95 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=36.4
Q ss_pred cccchHHHHHHHH-------HHHHHHHHhhccceeeecccCCCC--cchHHHHHHHHHHHHHHHHHh
Q psy11082 247 LSNTTAIAEAWAR-------LDHKFDLMYAKRAFVHWYVGEGME--EGEFSEAREDLAALEKDYEEV 304 (319)
Q Consensus 247 l~N~t~i~~~l~~-------~~~~f~~~~~~kAflH~Y~~~Gme--e~eF~ea~~~l~~li~~Y~~~ 304 (319)
++|.++|...|.. ++++-.++-.+|+|. ||+. -..+.||+..|..+.+++..-
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666654 455566666677655 4553 356999999999999999853
No 45
>KOG3178|consensus
Probab=24.30 E-value=73 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=24.8
Q ss_pred CCcccceEEeecCCCccCChHHHHHHHhhhhhCCCcceeE
Q psy11082 4 MGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF 43 (319)
Q Consensus 4 D~l~gf~i~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~ 43 (319)
..++|+-..-.+|||+| +++..|--.||++..+.+
T Consensus 173 ~Gf~~v~~avDvGgGiG-----~v~k~ll~~fp~ik~inf 207 (342)
T KOG3178|consen 173 TGFKGVNVAVDVGGGIG-----RVLKNLLSKYPHIKGINF 207 (342)
T ss_pred cccccCceEEEcCCcHh-----HHHHHHHHhCCCCceeec
Confidence 34666888889999876 555555449999765555
No 46
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=22.67 E-value=41 Score=32.33 Aligned_cols=17 Identities=53% Similarity=0.681 Sum_probs=13.0
Q ss_pred cCCCccCChHHHHHHHh
Q psy11082 15 FGGGTGSGFTSLLMERL 31 (319)
Q Consensus 15 l~GGTGSG~gs~l~e~l 31 (319)
++||||||=.+.|=..+
T Consensus 178 isGGTGSGKTTlLNal~ 194 (355)
T COG4962 178 ISGGTGSGKTTLLNALS 194 (355)
T ss_pred EeCCCCCCHHHHHHHHH
Confidence 57999999988764443
No 47
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=22.14 E-value=34 Score=29.56 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=42.8
Q ss_pred EeecCCCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCcccccccccccccccccCCCCceeeeccHHHHHHhhhcc
Q psy11082 12 FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 91 (319)
Q Consensus 12 ~~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~dN~~l~~~~~~~~ 91 (319)
+.|.+-|+-.. ++-++-.|+.+||... -.+|+|+...+... +-..-.-+..|.+.||.++.+.......-
T Consensus 47 i~GgalG~D~w-aae~vl~LK~~yp~ik--L~~v~Pf~~q~~~W--~~~~q~~y~~il~~aD~v~~vs~~~Y~~~----- 116 (177)
T PF06908_consen 47 ITGGALGVDLW-AAEVVLELKKEYPEIK--LALVLPFENQGNNW--NEANQERYQSILEQADFVVVVSERPYYSP----- 116 (177)
T ss_dssp EE---TTHHHH-HHHHHHTTTTT-TT-E--EEEEESSB-TTTTS---HHHHHHHHHHHHH-SEEEESSSSB---H-----
T ss_pred EECCcccHHHH-HHHHHHHHHhhhhheE--EEEEEcccchhhcC--CHHHHHHHHHHHHhCCEEEEccCCCCCCH-----
Confidence 44555554433 3444555899999753 46788986444321 11233456666778888887765422211
Q ss_pred ccCCCCccchhhHHHHhhccc
Q psy11082 92 DIERPTYTNLNRLIGQIVSSI 112 (319)
Q Consensus 92 ~~~~~~~~~~N~~ia~~i~~~ 112 (319)
..|..-|+.+..+-..+
T Consensus 117 ----~~~~~rn~fMvdhsd~~ 133 (177)
T PF06908_consen 117 ----GQLQKRNRFMVDHSDGL 133 (177)
T ss_dssp ----HHHHHHHHHHHHHSSEE
T ss_pred ----HHHHHHhHHHHhCCCeE
Confidence 12334566666655553
No 48
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.01 E-value=85 Score=29.51 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=23.8
Q ss_pred cceEE---eecCCCccCChHHHHHHHhhhhhCCCcceeEE
Q psy11082 8 GFLIF---HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFA 44 (319)
Q Consensus 8 gf~i~---~Sl~GGTGSG~gs~l~e~l~dey~~~~~~~~~ 44 (319)
|++++ ||+-|| +|+.++|.|.+++| .++--..
T Consensus 245 ~~IvT~EeHsi~GG----lGsaVAEvlse~~p-~~~~riG 279 (312)
T COG3958 245 GRIVTAEEHSIIGG----LGSAVAEVLSENGP-TPMRRIG 279 (312)
T ss_pred CcEEEEecceeecc----hhHHHHHHHHhcCC-cceEEec
Confidence 56666 799985 88999999999999 4433333
No 49
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=21.14 E-value=95 Score=22.36 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=29.1
Q ss_pred CCccCChHHHHHHHhhhhhCCCcceeEEEecCCCCCccccccccccccccccc
Q psy11082 17 GGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL 69 (319)
Q Consensus 17 GGTGSG~gs~l~e~l~dey~~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~ 69 (319)
-|+|-|.+..+...|++.|++.... .+++.....+.....|--++|-..+.
T Consensus 7 C~~G~~~s~~l~~~l~~~~~~~~~v--~~~~~~~~~~~~~~~~DlIitT~~l~ 57 (85)
T cd05568 7 CPSGIGTSRLLKSKLKKLFPEIEII--DVISLRELEEVDLDDYDLIISTVPLE 57 (85)
T ss_pred CCCCHHHHHHHHHHHHHHCCCceEE--EEEeHHHHhhCcccCCCEEEEccccC
Confidence 3557778888999999999875442 33332111221233455555555544
No 50
>PF04542 Sigma70_r2: Sigma-70 region 2 ; InterPro: IPR007627 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [, ]. The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1OR7_B 1H3L_B 2Z2S_C 2Q1Z_C 2O7G_B 1SMY_F 1IW7_P 2BE5_F 2A6E_F 2CW0_F ....
Probab=21.02 E-value=67 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=25.5
Q ss_pred HHHHHHhhccceeeecccCCCC-cchHHHHHHHHHHHHHHHH
Q psy11082 262 HKFDLMYAKRAFVHWYVGEGME-EGEFSEAREDLAALEKDYE 302 (319)
Q Consensus 262 ~~f~~~~~~kAflH~Y~~~Gme-e~eF~ea~~~l~~li~~Y~ 302 (319)
+++..+. ..+++.|.+.+.+ ||-++|++..+++-++.|.
T Consensus 3 ~~~~~~l--~~~~~~~~~~~~~~eD~~qe~~~~l~~~~~~~~ 42 (71)
T PF04542_consen 3 ERYYPLL--YRYARRYTGDPEDAEDLVQEAFIKLWRAIDSYD 42 (71)
T ss_dssp HHTHHHH--HHHHHTCTTCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH--HHHHHHHhCCHhhHHHHhhHHHHHHHhhhhccc
Confidence 3444444 3345556666544 4558999999998888885
No 51
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=20.94 E-value=44 Score=15.36 Aligned_cols=7 Identities=57% Similarity=1.545 Sum_probs=4.9
Q ss_pred cCcCCCc
Q psy11082 148 NLVPYPR 154 (319)
Q Consensus 148 nLvP~P~ 154 (319)
-|+|||+
T Consensus 4 GlI~fpR 10 (11)
T PF08259_consen 4 GLIPFPR 10 (11)
T ss_pred cccccCC
Confidence 4677776
Done!