RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11082
(319 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 634 bits (1638), Expect = 0.0
Identities = 265/321 (82%), Positives = 277/321 (86%), Gaps = 37/321 (11%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFLIFHSFGGGTGSGF SLL+ERLSVDYGKKSKLEF +YP+PQVSTAVVEPYNS+LT
Sbjct: 130 GLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLT 189
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
TH+ LEHSDC+FMVDNEAIYDICRRNLDIERPTYTNLNRLI Q+
Sbjct: 190 THSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLI----------------AQV 233
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLV+YAP+ISAEKAYHEQLSV EITNA
Sbjct: 234 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNA 293
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV---------------------G 223
CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA V G
Sbjct: 294 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVG 353
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAW+RLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 354 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 413
Query: 284 EGEFSEAREDLAALEKDYEEV 304
EGEFSEAREDLAALEKDYEEV
Sbjct: 414 EGEFSEAREDLAALEKDYEEV 434
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 607 bits (1567), Expect = 0.0
Identities = 249/334 (74%), Positives = 273/334 (81%), Gaps = 37/334 (11%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+FH+ GGGTGSG SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+
Sbjct: 131 GLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLS 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
TH+ LEH+D A M+DNEAIYDICRRNLDIERPTYTNLNRLI Q+
Sbjct: 191 THSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLI----------------AQV 234
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
+SS+TASLRFDGALNVDLTEFQTNLVPYPRIHF L +YAP+ISAEKAYHEQLSV EITN+
Sbjct: 235 ISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNS 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP---------------------VG 223
FEPAN M KCDPRHGKYMACC++YRGDVVPKDVNA G
Sbjct: 295 AFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCM+SN+TAIAE ++R+DHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 317
EGEFSEAREDLAALEKDYEEVG +S + EGE
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 595 bits (1535), Expect = 0.0
Identities = 248/336 (73%), Positives = 278/336 (82%), Gaps = 37/336 (11%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+F++ GGGTGSG SLL+ERLSVDYGKKSKL F +YP+PQVSTAVVEPYNS+L+
Sbjct: 131 GLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLS 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI Q+
Sbjct: 191 THSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLI----------------SQV 234
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYHEQLSV EITN+
Sbjct: 235 ISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNS 294
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV---------------------G 223
FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNA V G
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCG 354
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
INYQPPTVVPGGDLAKVQRAVCM+SN+TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 319
EGEFSEAREDLAALEKDYEEVG +S EGEG+ EEY
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEEY 450
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 478 bits (1232), Expect = e-170
Identities = 185/336 (55%), Positives = 228/336 (67%), Gaps = 42/336 (12%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+ HS GGGTGSG SLL+ERL +Y KK KL F+++PAP+VS VVEPYNS+LT
Sbjct: 129 GLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLT 188
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
H LE+SDC F+VDNEA+YDICRRNL I+ P+Y +LN+LI +
Sbjct: 189 LHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLI----------------STV 232
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
+SS+T SLRF G LNVDL QTNLVPYPR+HFPLV+Y P S A HE+ SV E+TN
Sbjct: 233 MSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQ 292
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP---------------------VG 223
F+P NQMV CDPR G+YMA C+L+RGDV P+DV+ V
Sbjct: 293 LFDPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVA 352
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
I +PP+ + A+V + CMLSNTT+IAEA+ R+D +FDLM+ KRAF+HWYVGEGME
Sbjct: 353 ICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGME 407
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 319
EGEFSEARED+A LE++YE DS + E EE
Sbjct: 408 EGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 348 bits (895), Expect = e-119
Identities = 134/318 (42%), Positives = 188/318 (59%), Gaps = 42/318 (13%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
LQGF I HS GGGTGSG SLL+E LS +Y K F+I+P+PQ S+ VVEPYNSIL+
Sbjct: 88 SLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILS 147
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
+ LE+SD + DNEA+Y+I R LDI+ P++ +LN +I QI
Sbjct: 148 LNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNII----------------AQI 191
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
+SSITASLRF G LN DL + TNLVP+PR+HF ++AP+IS + E+L++++I N
Sbjct: 192 ISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINE 251
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP-------------------VGIN 225
F N CDP G+Y+A +++RGDV ++ V
Sbjct: 252 LFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQSWIPDGFKVSNC 311
Query: 226 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG 285
+PP A++ ++ LSN+T+I E+ RL KFD +Y ++AF+HWY+GEGM+E
Sbjct: 312 KKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEM 364
Query: 286 EFSEAREDLAALEKDYEE 303
EF+EA L L + Y+E
Sbjct: 365 EFTEAESSLEDLIQSYQE 382
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 287 bits (736), Expect = 7e-95
Identities = 121/316 (38%), Positives = 180/316 (56%), Gaps = 39/316 (12%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + HS GGGTGSG +LL+ ++ +Y + F+++P+P+VS VVEPYN+ L+
Sbjct: 129 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSV 188
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E+SD F +DNEA+YDIC R L + PTY +LN L+ ++S IT LR P
Sbjct: 189 HQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFP------ 242
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 243 ----------GQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 292
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQ---PPTVV---PGGDLAK 239
F+ N M CDPRHG+Y+ ++RG V K+V+ + +N Q V P
Sbjct: 293 FDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQM-LNVQNKNSSYFVEWIPN----N 347
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ AVC + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 348 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 407
Query: 288 SEAREDLAALEKDYEE 303
+EA ++ L +Y++
Sbjct: 408 TEAESNMNDLVSEYQQ 423
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 276 bits (709), Expect = 3e-92
Identities = 107/258 (41%), Positives = 141/258 (54%), Gaps = 29/258 (11%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
LQGF I HS GGGTGSG +L ERL +Y K+ K+ F+I P P +V PYNSILT
Sbjct: 88 SLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGV-IVRPYNSILT 146
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
HT EHSDC ++DNEA++DIC R L I++PT+ ++N L+ +SS+T LR
Sbjct: 147 LHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLR------- 199
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
FDG+LNVDL E NLVP+PR+HF +V YAP+ S A L V E+
Sbjct: 200 ---------FDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQ 250
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA-------PVGINYQPPTVVPGGD- 236
NQMV CDP HG Y+A +L RG V P +V P + G
Sbjct: 251 ALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSHLSWSPPGIKVGVS 310
Query: 237 ----LAKVQRAVCMLSNT 250
++ + + +LSN+
Sbjct: 311 PTPPASEHKVSALLLSNS 328
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 260 bits (666), Expect = 3e-84
Identities = 125/330 (37%), Positives = 190/330 (57%), Gaps = 37/330 (11%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF I HS GGGTGSG +LL+ +L +Y + + F+++P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D + +DNEA+YDIC R L + PTY +LN L+ ++S +T LR P
Sbjct: 190 HQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + NLVP+PR+HF ++ +AP+ S + LSV E+T
Sbjct: 244 ----------GQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQ-----------PPTV--- 231
F+ N M DPRHG+Y+ L+RG + K+V+ + +N Q P +
Sbjct: 294 FDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQM-LNVQNKNSSYFVEWIPNNIKSS 352
Query: 232 ---VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 288
+P ++ +V + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 353 VCDIP---PKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 289 EAREDLAALEKDYEEVGMDSVEGEGEGAEE 318
EA ++ L +Y++ +VE EGE EE
Sbjct: 410 EAESNMNDLVSEYQQYQDATVEEEGEFDEE 439
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 254 bits (651), Expect = 6e-82
Identities = 118/331 (35%), Positives = 187/331 (56%), Gaps = 39/331 (11%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQGF + HS GGGTGSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+
Sbjct: 130 LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSV 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQIV 125
H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LR P
Sbjct: 190 HQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP------ 243
Query: 126 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNAC 185
G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 244 ----------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 186 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPPTV------VPGGDLAK 239
++ N M DPRHG+Y+ ++RG + K+V+ + IN Q +P
Sbjct: 294 WDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM-INVQNKNSSYFVEWIPN----N 348
Query: 240 VQRAVC------------MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 287
V+ +VC + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF
Sbjct: 349 VKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 288 SEAREDLAALEKDYEEVGMDSVEGEGEGAEE 318
+EA ++ L +Y++ + + EGE +E
Sbjct: 409 TEAESNMNDLVSEYQQYQDATADEEGEYEDE 439
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 199 bits (509), Expect = 2e-61
Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 60/320 (18%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA--PQVSTAVVEPYNSIL 63
LQ F I HS GGGTGSG + ++E L+ ++ + + ++YP+ V T+ PYNS+L
Sbjct: 99 LQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITS---PYNSVL 155
Query: 64 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQ 123
+EH+DC ++N+A+ N SI A+L
Sbjct: 156 ALRELIEHADCVLPIENQALVPFDAMN--------------------SIVANL------- 188
Query: 124 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITN 183
+ ++T+S+RF+G+LNVDL E NLVP+PR+HF + + +P+ + ++ +
Sbjct: 189 -LLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFS 247
Query: 184 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV-------------------GI 224
F +Q+++ DP+HG Y+AC +L RG+V D+ + G+
Sbjct: 248 DAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKIGL 307
Query: 225 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 284
PP ++ L+N T I + L +F +Y ++A +H Y GME+
Sbjct: 308 CSVPP--------VGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQ 359
Query: 285 GEFSEAREDLAALEKDYEEV 304
G+F+EA E ++ L +Y+ +
Sbjct: 360 GDFTEALESISNLIDEYDYL 379
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 194 bits (496), Expect = 1e-58
Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 40/329 (12%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 65
LQ F + HS GGGTGSG + ++ L ++ + ++P+ V + PYNS
Sbjct: 131 LQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFAL 189
Query: 66 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPD----- 120
+EH+DC +DN+A+ +I L ++ N G + +
Sbjct: 190 RELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPY 249
Query: 121 ------LGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE 174
+ Q++S++T+S+RF+G+LNVD+ E TNLVPYPR+HF + AP++S +
Sbjct: 250 DKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVG 309
Query: 175 QLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPV------------ 222
+ ++ C +P +QMV P GKY+A ++ RG DV +
Sbjct: 310 PRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQLNMIYW 369
Query: 223 -------GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 275
G+ P P ++ L+N I + + +F+ +Y +++ VH
Sbjct: 370 NEDGFKTGLCNVSPLGQP--------YSLLCLANNCCIRNKFESMLERFNKLYKRKSHVH 421
Query: 276 WYVGEGMEEGEFSEAREDLAALEKDYEEV 304
Y E +E+ F E E + L DY +
Sbjct: 422 HYT-EYLEQAYFDETLETIQNLIDDYAYL 449
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 168 bits (427), Expect = 2e-52
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 26/131 (19%)
Query: 153 PRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 212
PR+HF + YAP+ S KA H + SV+E+T F+P N MV CDPRHGKY++C +L RGD
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 213 VVPKDVNA-----------------P----VGINYQPPTVVPGGDLAKVQRAVCMLSNTT 251
V PK+V+ P V I PP +PG D+ + ML+NTT
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDV-----SGLMLANTT 115
Query: 252 AIAEAWARLDH 262
AI E + R+
Sbjct: 116 AIQELFKRILE 126
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 173 bits (442), Expect = 5e-51
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 38/318 (11%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQVSTAVVEPYNSILT 64
L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P + S VV+PYNSILT
Sbjct: 130 LEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILT 189
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
+ ++DC ++DN A+ I L I+ PT+ +N +VS+ +
Sbjct: 190 LKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQIN----SLVST------------V 233
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA-YHEQLSVMEITN 183
+S+ T +LR+ G +N DL +L+P PR+HF + +Y P+ S + A + +V+++
Sbjct: 234 MSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMR 293
Query: 184 ACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAPVG----------INYQPPT-- 230
+P N MV ++G Y++ + +G+V P V+ + I + P +
Sbjct: 294 RLLQPKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQ 353
Query: 231 VVPGGDLAKVQRA--VC--MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG- 285
V V A V ML+N T+IA + R+ +FD + +RAF+ Y E M
Sbjct: 354 VALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDN 413
Query: 286 --EFSEAREDLAALEKDY 301
EF E+RE + +L ++Y
Sbjct: 414 LDEFDESREVVQSLIEEY 431
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 143 bits (362), Expect = 8e-42
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 7 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 66
G I GGGTG+G ++ E +YG + + P VV PYN+ L
Sbjct: 84 DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKP--FSFEGVVRPYNAELGLE 139
Query: 67 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVP 119
EH D ++DN+A+ DIC R L + RP + + N L+ Q VS IT +R P
Sbjct: 140 ELREHVDSLIVIDNDALLDICGRKLPL-RPAFKDANDLLAQAVSGITDLIRFP 191
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 142 bits (359), Expect = 7e-39
Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 47/325 (14%)
Query: 6 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA-PQVSTAVVEPYNSILT 64
L+GF++ HS GGTGSG S L+E L+ Y KK ++++P + S VV+PYNS+LT
Sbjct: 132 LEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLT 191
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
++DC ++DN A+ I L +E PT+ N L+ ++S+ T +LR P
Sbjct: 192 LKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTLRYP----- 246
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVMEITN 183
G +N DL +L+P PR HF + Y P+ + + + +V+++
Sbjct: 247 -----------GYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 184 ACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAPVG----------INYQP 228
+ N MV R KY++ + +G+V P V+ + I + P
Sbjct: 296 RLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGP 355
Query: 229 PTVVPGGDLAK----VQRAV----CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 280
++ L++ VQ A ML+N T+I +++ ++D + K+AF+ Y
Sbjct: 356 ASIQVA--LSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKF 413
Query: 281 GM----EEGEFSEAREDLAALEKDY 301
M + EF E+RE + +L +Y
Sbjct: 414 PMFADNDLSEFDESREIVESLVDEY 438
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 118 bits (299), Expect = 3e-32
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GL GF I GGGTGSG ++ E L YG L A+ P S VV PYN+IL
Sbjct: 118 GLDGFFITAGLGGGTGSGAAPVIAEILKELYGA---LTVAVVTFPFTSEGVVRPYNAILG 174
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 100
+EHSD ++DN+A+ +IC LDI+ P + N
Sbjct: 175 LKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 115 bits (290), Expect = 4e-29
Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 57/336 (16%)
Query: 8 GFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV-VEPYNSILTTH 66
GFL+ HS GGTGSG S + E L +Y + L + P + V V+ YN++LT
Sbjct: 128 GFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVV--WPYTTGEVIVQNYNTVLTLA 185
Query: 67 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIG-QIVSSI------------T 113
E SD +++N+ I+ IC + +++ + +++N++I Q+ S +
Sbjct: 186 HLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGSNGAL 245
Query: 114 ASLRVPDLGQIVSSI--TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 171
A L +V + + + LT +P + F +++ ++ K
Sbjct: 246 AGRSTNPLNDLVEDLCPHPAYKL-------LTIRSLPQMPEKSLAFSTFSWSALL---KR 295
Query: 172 YHEQL---SVMEITNACF-----EPANQMVKCDPRHG-KYMACCMLYRGDVVP------- 215
H+ L S ME A+ + H K +A ++ RG V
Sbjct: 296 LHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF 355
Query: 216 KDVNAPVGINYQPPTVVPGGDLAKVQRA-----VCMLSNTTAIAEAWARLDHKFDLMYAK 270
+D V N+ P V K + V ++SN+ I + + K M+A
Sbjct: 356 RDPLLYV--NWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQTIIDPLDNILEKAWNMFAS 413
Query: 271 RAFVHWYVGEGMEEGEFSEAREDLAALE---KDYEE 303
A++H Y G+EE +F + A LE Y+
Sbjct: 414 GAYLHQYEKYGLEEEDF---LDAFATLEQIIASYKN 446
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 76.8 bits (190), Expect = 2e-17
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 31/138 (22%)
Query: 138 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVME--ITNACFEPANQMVKC 195
+NVD + +T +VP F ++ P +A L E I++ E +N M
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAK 53
Query: 196 DPRHGKYMACCMLYRGDVVPKDVNAPVGI-------NYQP---PTVVPGGDLAKVQRAVC 245
+ D+ K+VN + + P + ++
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDE-----ELGGDEI 102
Query: 246 MLSN-TTAIAEAWARLDH 262
++ T I + RL
Sbjct: 103 RVTVIATGIGSLFKRLSE 120
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 35.0 bits (81), Expect = 0.038
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 8 GFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 67
L+ GGGTGSG +L + L Y + +A+ P N+ +
Sbjct: 100 AILVIAGLGGGTGSGGAPVLAKELKERY---EEPVYALGVLPAREEGERYSANAARSLDA 156
Query: 68 TLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI----------GQIVSSITASLR 117
E +D + DN+A R+ +E Y +N I G+ + +
Sbjct: 157 LSEEADAIILFDNDAWK---RKGESVEE-AYDRINEEIARRIGLLLRAGEANAGDSVGES 212
Query: 118 VPDLGQIVSSITA 130
V D +++++++
Sbjct: 213 VLDASEVINTLSG 225
>gnl|CDD|221207 pfam11754, Velvet, Velvet factor. The velvet factor is conserved
in many fungal species and is found to have gained
different roles depending on the organism's need,
expanding the conserved role in developmental
programmes. The velvet factor orthologues can be adapted
to the fungal-specific life cycle and may be involved in
diverse functions such as sclerotia formation and toxin
production, as in A. parasiticus, nutrition-dependent
sporulation, as in A. fumigatus, or the
microconidia-to-macroconidia ratio and cell wall
formation, as in the heterothallic fungus Fusarium
verticilloides.
Length = 189
Score = 31.1 bits (71), Expect = 0.54
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 59 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRV 118
N H TLE++ I + N L G +VSS L
Sbjct: 53 QNPYFFLHCTLENAR-----------GIAEGRVVTPSADSPNTPVLTGTLVSS-PFRLDD 100
Query: 119 PD 120
PD
Sbjct: 101 PD 102
>gnl|CDD|227077 COG4734, ArdA, Antirestriction protein [General function prediction
only].
Length = 193
Score = 29.2 bits (65), Expect = 2.0
Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 17/146 (11%)
Query: 170 KAYHEQLSVMEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAPVGINYQPP 229
K + E +S M N MVKC G Y AC L+ + +V +
Sbjct: 28 KWFQETVSAML---FDSRFPNVMVKCPNCEGFYEACTALHADE---WEVPSAEEWAIHDQ 81
Query: 230 TVVPGGDLA------KVQRAVCMLS-NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 282
+P L+ K+ + A AWA + + A Y GE
Sbjct: 82 EGIPSQFLSEYAIWDKIAAYKRAEEEHREAAFIAWAEYSGECSVEAFDEA----YRGEAE 137
Query: 283 EEGEFSEAREDLAALEKDYEEVGMDS 308
E +F++ + L + + S
Sbjct: 138 SEEDFAQEMVEDNGLLNEVPDPLRSS 163
>gnl|CDD|220724 pfam10380, CRF1, Transcription factor CRF1. CRF1 is a
transcription factor that co-represses ribosomal genes
with FHL1 via the TOR signalling pathway and protein
kinase A.
Length = 114
Score = 27.8 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 92 DIERPTYTNLNRLIG----QIVSSITASLRVPDLG 122
D P T+ N+LI +++SS TA R P LG
Sbjct: 7 DESLPPPTSKNKLISKKAKEVLSSKTAGYRPPKLG 41
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 28.0 bits (62), Expect = 8.4
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 22/118 (18%)
Query: 46 YPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN-EAIYDICRRNLDIERPTYTNLNRL 104
YP Q + + N I+ E D D+ EA+ D+C +++ +++L
Sbjct: 21 YPRLQDPSREL---NVIIDQLAVSEQID--ASPDSLEALIDLCHDFPHLQKELEILISKL 75
Query: 105 IGQIVSSITASLRVPDLGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 162
VS + D +VS NV+ T Q NL RI L +
Sbjct: 76 KTSTVSDNSE-----DYNYLVSH-----------NVNFTIPQCNLENKGRIFQLLKSK 117
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 27.5 bits (61), Expect = 8.4
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 9 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 68
I GGGTG+G ++ E L + L A+ P + N+ T
Sbjct: 88 VFITAGLGGGTGTGGAPVVAEHLK----RIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTL 143
Query: 69 LEHSDCAFMVDNEAIYDI 86
+ D ++ NE + I
Sbjct: 144 VREVDNLMVIPNEKLRQI 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,130,780
Number of extensions: 1528837
Number of successful extensions: 1376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1332
Number of HSP's successfully gapped: 29
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)