RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11082
(319 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 523 bits (1349), Expect = 0.0
Identities = 289/338 (85%), Positives = 294/338 (86%), Gaps = 38/338 (11%)
Query: 4 MGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 63
GLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSIL
Sbjct: 130 TGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSIL 189
Query: 64 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQ 123
TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI Q
Sbjct: 190 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI----------------SQ 233
Query: 124 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITN 183
IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSV EITN
Sbjct: 234 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITN 293
Query: 184 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA-----------------P----V 222
ACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA P V
Sbjct: 294 ACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKV 353
Query: 223 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 282
GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM
Sbjct: 354 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 413
Query: 283 EEGEFSEAREDLAALEKDYEEVGMDSVEGEGEG-AEEY 319
EEGEFSEARED+AALEKDYEEVG+DSVEGEGE EEY
Sbjct: 414 EEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 502 bits (1294), Expect = e-179
Identities = 114/321 (35%), Positives = 162/321 (50%), Gaps = 46/321 (14%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGFL+ HS GGG+GSG SL++ERL Y KK F++ P+P +S + VEPYN+ILT
Sbjct: 130 GLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILT 189
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
L+++D A ++DNEA++ I + L+ P Y +LN +I IVSS+TASLR
Sbjct: 190 LQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTASLR------- 241
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
F G LN DL+EF TNLVP+P HF ++AP+ A + + + ++
Sbjct: 242 ---------FPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARE 292
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA---------------P------VG 223
F N D + G Y+A L+RGDV KDV+ P +G
Sbjct: 293 TFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLG 352
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
P L L N T IA + RL +FD+M+ A+ HWY G+
Sbjct: 353 YAETAPEGFASSGL--------ALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVS 404
Query: 284 EGEFSEAREDLAALEKDYEEV 304
++AR +A L + Y +
Sbjct: 405 RDMMAKARNQIATLAQSYRDA 425
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 500 bits (1290), Expect = e-179
Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 45/335 (13%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS VVEPYN+ L+
Sbjct: 129 CLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLS 188
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
H +E++D + +DNEA+YDIC R L + PTY +LN L+
Sbjct: 189 VHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLV----------------SAT 232
Query: 125 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNA 184
+S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T
Sbjct: 233 MSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAP---------------------VG 223
F+ N M CDPRHG+Y+ ++RG + K+V+
Sbjct: 293 MFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTA 352
Query: 224 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 283
+ PP ++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+
Sbjct: 353 VCDIPPR--------GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 284 EGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEE 318
E EF+EA ++ L +Y++ + + +GE EE
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEE 439
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 500 bits (1288), Expect = e-178
Identities = 100/336 (29%), Positives = 167/336 (49%), Gaps = 46/336 (13%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
+ G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS+ V EPYN++
Sbjct: 133 NVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFA 192
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
+T +D + DNEA++D+ R +IE PT +LN LI +
Sbjct: 193 LNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLI----------------TEA 236
Query: 125 VSSITASLRFDGALNVD--LTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEIT 182
++ ITAS+RF G L V+ L E TNLVP P +HF + +AP+ +++ E+L + E+
Sbjct: 237 LAGITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMI 296
Query: 183 NACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV--------------------NAPV 222
+ F+ + C P G++++ +LYRG + K + +
Sbjct: 297 KSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKI 356
Query: 223 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 282
G QP ++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM
Sbjct: 357 GYVEQPGI--------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGM 408
Query: 283 EEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEE 318
E + + R L + Y+ + + + +
Sbjct: 409 SEEQINVLRASAQELVQSYQVAEESGAKAKVQDSAG 444
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 499 bits (1287), Expect = e-178
Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 50/344 (14%)
Query: 4 MGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSI 62
L+GF++ HS GGTGSG S L+ERL+ Y KK ++++P ++S VV+PYNS+
Sbjct: 130 DSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSL 189
Query: 63 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLG 122
LT +++DC ++DN A+ I L I+ P+++ +N+L+
Sbjct: 190 LTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLV----------------S 233
Query: 123 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAE-KAYHEQLSVMEI 181
I+S+ T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V+++
Sbjct: 234 TIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDV 293
Query: 182 TNACFEPANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNAP----------------- 221
+P N MV Y+A + +G+V P V+
Sbjct: 294 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353
Query: 222 ----VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 277
V ++ + P + + + M++N T+I+ + R ++D + + AF+ +
Sbjct: 354 ASIQVALSRKSPYLPSAHRV-----SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQF 408
Query: 278 VGEGMEEGEFSE---AREDLAALEKDYEEVGMDSVEGEGEGAEE 318
E M + F E +RE + L +Y G +
Sbjct: 409 RKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQV 452
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex
structure, solution structure, CLIP, structural protein;
NMR {Homo sapiens}
Length = 36
Score = 61.5 bits (149), Expect = 4e-13
Identities = 31/36 (86%), Positives = 33/36 (91%), Gaps = 1/36 (2%)
Query: 285 GEFSEAREDLAALEKDYEEVGMDSVEGEG-EGAEEY 319
GEFSEARED+AALEKDYEEVG+DSVEGEG E EEY
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 47/253 (18%), Positives = 77/253 (30%), Gaps = 91/253 (35%)
Query: 70 EHSDCAFMVDNEA-----------IYDICRRN---LDIE------RPTYTNLNRLIGQIV 109
+ S A V N A I DI N L I + N + +I +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-- 1694
Query: 110 SSITASLRVPDLGQIVSSITASLRF---DGALNVDLTEF-QTNLVPYPRIHFPLVTYAP- 164
+ + L+ + + ++ + S F G L+ T+F Q P + L+ A
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQFTQ------PAL-T-LMEKAAF 1744
Query: 165 -------VISAEKAY--HEQLSVMEIT-NAC------FEPANQMVKCDPRHGKYMACCM- 207
+I A+ + H S+ E A E ++V R G M +
Sbjct: 1745 EDLKSKGLIPADATFAGH---SLGEYAALASLADVMSIESLVEVVFY--R-GMTMQVAVP 1798
Query: 208 ---LYRGD-----VVPKDVNAPVG---------------------INYQPP--TVVPGGD 236
L R + + P V A +NY V GD
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 237 LAKVQRAVCMLSN 249
L + +L+
Sbjct: 1859 LRALDTVTNVLNF 1871
Score = 29.2 bits (65), Expect = 2.2
Identities = 47/311 (15%), Positives = 81/311 (26%), Gaps = 125/311 (40%)
Query: 63 LT-THTTLEHSDCAFMVDNEAIYDICRRNLDIERPT--YTNLNRLIGQIVSSI---TASL 116
LT +H +LEH +V PT + ++L Q + T
Sbjct: 9 LTLSHGSLEHV---LLV-----------------PTASFFIASQLQEQFNKILPEPTEGF 48
Query: 117 RVPD------------LGQIVSSI--TASLRFDGALNVDLTEFQTNLVPYPRIH-----F 157
D LG + S + + +FD LN+ LTEF+ + IH
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 158 PLVTYAPVISAE---KAYHEQLSVM------EITNACFEPANQMVKCDPRHGKYMACC-- 206
++ + K Y + + +A F + + + +A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE------GNAQLVAIFGG 162
Query: 207 ------------MLYRGDVVPKDVNAPVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 254
LY+ Y GDL ++ + LS
Sbjct: 163 QGNTDDYFEELRDLYQ--------------TYHVLV----GDL--IKFSAETLSELIRTT 202
Query: 255 EAWARL-DHKFDLM-------------YAKRA-----------FVHWYV---GEGMEEGE 286
++ +++ Y H+ V G GE
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 287 FSEAREDLAAL 297
R L
Sbjct: 263 L---RSYLKGA 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 42/264 (15%), Positives = 79/264 (29%), Gaps = 74/264 (28%)
Query: 7 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIY----PAPQVSTAVVEPYNSI 62
++ G GSG T + ++ Y + K++F I+ V+E +
Sbjct: 150 AKNVLID---GVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 63 LTT----HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN-LNRLIGQIVSSITASLR 117
L T+ + +I RR L + Y N L L+ V + A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCL--LVLLNVQNAKA-WN 260
Query: 118 VPDLG-QIV-----SSITASLRFDGALNVDLTEFQTNLVPY-----------------PR 154
+L +I+ +T L ++ L L P PR
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 155 ----IHFPLVTYAPVISA------------EKAYHEQLS-VMEITNACFEPANQMVKCDP 197
+ P +I+ + ++L+ ++E + EPA +
Sbjct: 321 EVLTTN-PRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA------EY 371
Query: 198 RHGKYMACCMLYRGDVVPKDVNAP 221
R + + P + P
Sbjct: 372 RK-MFDRLSVF------PPSAHIP 388
Score = 29.4 bits (65), Expect = 1.8
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 29 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICR 88
ERL L+F P++ N I + +T L A M ++EAI++
Sbjct: 542 ERLVNAI-----LDFL----PKIEE------NLICSKYTDLLRI--ALMAEDEAIFEEAH 584
Query: 89 RNLD 92
+ +
Sbjct: 585 KQVQ 588
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 37.4 bits (86), Expect = 0.005
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 33/145 (22%)
Query: 9 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPA----PQVSTAVVEPYNSILT 64
+ + GG GSG T ++ Y K + P + +N +
Sbjct: 92 VIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWND-IM 150
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQI 124
T +++DN +++N+ + + G
Sbjct: 151 RSTNEGKDISIYLLDNNKRE------------KESDINKEFATLFNDFMNMSESHAEG-- 196
Query: 125 VSSITASLRFDGALNVDLTEFQTNL 149
VD E L
Sbjct: 197 --------------VVDEDEISKLL 207
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 32.6 bits (73), Expect = 0.15
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 17/134 (12%)
Query: 9 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV-----------STAVVE 57
FLI GGG G+G+ SL+++ + + P+
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFM 210
Query: 58 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN------LDIERPTYTNLNRLIGQIVSS 111
L ++ ++ + DN + I + N + +
Sbjct: 211 REQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHE 270
Query: 112 ITASLRVPDLGQIV 125
I +
Sbjct: 271 INIIPENYGSDNVT 284
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 251 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 307
+ + L + D A E E +E R + +Y+E+ +D
Sbjct: 17 AKLRDLEDSLARERDTSRRLLAEK---------EREMAEMRARMQQQLDEYQEL-LD 63
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 29.3 bits (65), Expect = 1.6
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 22/139 (15%)
Query: 14 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAI--YPAPQVSTAVVEP-YNSILTTHTTLE 70
GGGTG+G +E L + + P + V+E + I + E
Sbjct: 120 GLGGGTGTGALLKAIEMLY----EHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQE 175
Query: 71 HSDCAFMVDNEAIYDICRRNLDIE--RPTYTNLNRLIGQIVSSITASLRVPDLGQIVSSI 128
++DN +Y + N+ I + I + +
Sbjct: 176 AFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEI-------------NLV 222
Query: 129 TASLRFDGALNVDLTEFQT 147
T+S + D +EF
Sbjct: 223 TSSFTPFSDTHFDASEFAQ 241
>3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical,
magnesium; HET: ADP; 1.92A {Homo sapiens}
Length = 357
Score = 29.3 bits (65), Expect = 2.0
Identities = 6/50 (12%), Positives = 10/50 (20%)
Query: 250 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 299
A AEA L Y + + + +
Sbjct: 60 HLATAEALVEAGKAPKLTQLYYLLAKHYQDCMEDMDGRAPGGASVHNAMQ 109
>2jq8_A Vitronectin; somatomedin B domain, disulfide-rich domain, PAI-1,
UPAR, cell adhesion; NMR {Homo sapiens} SCOP: g.64.1.1
Length = 53
Score = 26.3 bits (58), Expect = 2.6
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 185 CFEPANQMVK--CDPRHGKYMACCMLY---------RGDVVP 215
C E N K CD Y +CC Y RGD
Sbjct: 9 CTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVTRGDHHH 50
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear
membrane LEFT-handed coiled coil, right-handed coiled
coil; HET: MSE; 2.40A {Homo sapiens}
Length = 74
Score = 26.2 bits (58), Expect = 3.8
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 284 EGEFSEAREDLAALEKDYEEVGMD 307
E E +E R + +Y+E+ +D
Sbjct: 18 EREMAEMRARMQQQLDEYQEL-LD 40
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 26.0 bits (58), Expect = 5.4
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 251 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 307
I E L + D E E +E R+ + DYE++ +D
Sbjct: 26 ERIQELEDLLAKEKDNSRRMLTDK---------EREMAEIRDQMQQQLNDYEQL-LD 72
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 27.2 bits (59), Expect = 7.0
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 10 LIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL 69
++ +S GGG+GS L+ +L+ + ++ ++
Sbjct: 85 IVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNK 144
Query: 70 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDLGQ 123
V N + +Y ++N +I I + + +
Sbjct: 145 HLPIVVNYVPNT------------QGRSYESIND---EIAEKIRKVVLLVNQNH 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 7.9
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 191 QMVKCDPRHGKYMACCMLYRGDVVPK-DVNAPV 222
Q +K K A LY D P + A +
Sbjct: 20 QALK------KLQASLKLYADDSAPALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,905,596
Number of extensions: 295820
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 22
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)