RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11082
(319 letters)
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 286 bits (732), Expect = 2e-98
Identities = 166/195 (85%), Positives = 170/195 (87%), Gaps = 21/195 (10%)
Query: 136 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKC 195
GALNVDLTEFQTNLVPYPR HFPL TYAPVISAEKAYHEQLSV EITNACFEPANQMVKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 196 DPRHGKYMACCMLYRGDVVPKDVNAP---------------------VGINYQPPTVVPG 234
DPRHGKYMACC+LYRGDVVPKDVNA VGINY+PPTVVPG
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 235 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 294
GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 295 AALEKDYEEVGMDSV 309
AALEKDYEEVG+DSV
Sbjct: 181 AALEKDYEEVGVDSV 195
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 241 bits (617), Expect = 5e-81
Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 136 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKC 195
G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N M C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 196 DPRHGKYMACCMLYRGDVVPKDVNAPV-------------GINYQPPTVVPGGDLAKVQR 242
DPRHG+Y+ ++RG + K+V+ + I T V ++
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 120
Query: 243 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 302
+ + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 121 SATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 180
Query: 303 EV 304
+
Sbjct: 181 QY 182
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 226 bits (577), Expect = 6e-75
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 139 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVMEITNACFEPANQMVKCDPR 198
+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F+ + C P
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPM 60
Query: 199 HGKYMACCMLYRGDVVPKD--------VNAPVGINYQPPTVVPGG----DLAKVQRAVCM 246
G++++ +LYRG + K + + + Y PT G ++++ +
Sbjct: 61 EGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAFKIGYVEQPGISHRKSMVL 120
Query: 247 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 304
L+N T IA R+ H FD ++ ++AF +WY+ EGM E + + R L + Y+
Sbjct: 121 LANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVA 178
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 191 bits (487), Expect = 1e-60
Identities = 49/113 (43%), Positives = 73/113 (64%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
+ G ++ H+ GGGTGSGF +LL+E L YG+ L A+ P+PQVS+ V EPYN++
Sbjct: 131 NVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFA 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 117
+T +D + DNEA++D+ R +IE PT +LN LI + ++ ITAS+R
Sbjct: 191 LNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 243
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 190 bits (484), Expect = 3e-60
Identities = 52/116 (44%), Positives = 76/116 (65%)
Query: 4 MGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 63
LQGF + HS GGGTGSG +LL+ ++ +Y + F++ P+P+VS VVEPYN+ L
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATL 187
Query: 64 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVP 119
+ H +E++D + +DNEA+YDIC R L + PTY +LN L+ +S +T LR P
Sbjct: 188 SVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 189 bits (482), Expect = 9e-60
Identities = 110/113 (97%), Positives = 112/113 (99%)
Query: 5 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILT 64
GLQGF +FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILT
Sbjct: 131 GLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILT 190
Query: 65 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 117
THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 35.7 bits (82), Expect = 0.003
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 1 MSVMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 60
+ I FGGGTG+G S ++ +++ + G + AI P
Sbjct: 80 EVLQDTHMVFITAGFGGGTGTGA-SPVIAKIAKEMGILT---VAIVTTPFYFEGPERLKK 135
Query: 61 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVP 119
+I +H D + N + + R++ I+ + + + Q V I+ +
Sbjct: 136 AIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISELITKR 193
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 35.2 bits (81), Expect = 0.005
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 9 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 68
I GGGTG+G ++ E + L A+ P +
Sbjct: 89 VFITTGMGGGTGTGAAPIIAEVAK----EMGILTVAVVTRPFPFEGRKRMQIADEGIRAL 144
Query: 69 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDL 121
E D + NE + I ++ + + + ++ V I+ ++ P +
Sbjct: 145 AESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDIIKRPGM 196
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 29.1 bits (65), Expect = 0.55
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 3 VMGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 62
+ I GGGTG+G + ++ +S G L A+ P V V N++
Sbjct: 97 IQDSDMVFITCGLGGGTGTGS-APVVAEISKKIG---ALTVAVVTLPFVMEGKVRMKNAM 152
Query: 63 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRVPDL 121
+H+D ++ NE +++I N+ ++ + + ++ V + + L
Sbjct: 153 EGLERLKQHTDTLVVIPNEKLFEI-VPNMPLKL-AFKVADEVLINAVKGLVELITKDGL 209
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,167,622
Number of extensions: 52567
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 10
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)