Query psy11084
Match_columns 277
No_of_seqs 178 out of 1137
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:35:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 2.8E-88 6.2E-93 625.9 15.6 229 46-277 34-262 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 1.3E-69 2.7E-74 505.6 12.8 215 48-277 29-243 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 4.5E-63 9.8E-68 450.3 10.3 223 47-277 13-236 (289)
4 cd03505 Delta9-FADS-like The D 100.0 3.2E-55 6.8E-60 382.1 7.8 136 79-277 1-136 (178)
5 PF00487 FA_desaturase: Fatty 99.2 1.4E-10 3E-15 100.7 9.4 70 88-157 10-80 (257)
6 cd01060 Membrane-FADS-like The 98.9 2E-09 4.3E-14 85.9 4.7 65 89-155 7-73 (122)
7 cd03506 Delta6-FADS-like The D 97.9 9.5E-06 2.1E-10 71.6 4.3 100 84-205 6-106 (204)
8 cd03513 CrtW_beta-carotene-ket 97.4 0.0041 9E-08 56.5 13.2 47 107-153 55-103 (225)
9 cd03511 Rhizopine-oxygenase-li 97.3 0.00084 1.8E-08 62.1 7.7 49 106-154 66-115 (285)
10 cd03512 Alkane-hydroxylase Alk 97.1 0.0042 9.2E-08 59.0 10.9 77 79-162 69-147 (314)
11 cd03507 Delta12-FADS-like The 96.5 0.0086 1.9E-07 53.9 7.4 54 100-154 50-104 (222)
12 PLN03198 delta6-acyl-lipid des 96.5 0.0086 1.9E-07 60.8 8.2 63 82-150 240-303 (526)
13 PLN03199 delta6-acyl-lipid des 96.4 0.0081 1.7E-07 60.3 7.4 49 94-148 177-226 (485)
14 COG3239 DesA Fatty acid desatu 96.3 0.015 3.3E-07 55.8 7.9 55 93-153 79-133 (343)
15 cd03514 CrtR_beta-carotene-hyd 96.2 0.011 2.3E-07 52.8 6.1 49 107-155 47-96 (207)
16 cd03510 Rhizobitoxine-FADS-lik 96.2 0.008 1.7E-07 52.3 5.1 49 107-155 44-93 (175)
17 PLN02498 omega-3 fatty acid de 95.9 0.035 7.6E-07 55.4 8.6 56 92-153 164-220 (450)
18 PLN02579 sphingolipid delta-4 95.8 0.029 6.3E-07 53.7 7.3 78 77-155 67-147 (323)
19 PLN02598 omega-6 fatty acid de 95.8 0.035 7.5E-07 55.0 8.0 46 107-152 148-194 (421)
20 cd03508 Delta4-sphingolipid-FA 95.7 0.029 6.4E-07 52.8 7.0 49 106-155 67-118 (289)
21 cd03509 DesA_FADS-like Fatty a 95.4 0.052 1.1E-06 51.0 7.5 49 106-155 49-100 (288)
22 PLN02505 omega-6 fatty acid de 95.2 0.096 2.1E-06 51.2 8.7 46 107-152 109-155 (381)
23 KOG4232|consensus 86.9 7.5 0.00016 38.7 10.9 61 91-156 156-217 (430)
24 KOG2987|consensus 62.0 14 0.0003 34.9 4.7 102 41-149 34-138 (324)
25 PF11947 DUF3464: Protein of u 56.5 20 0.00044 30.9 4.6 47 54-100 62-117 (153)
26 cd00547 QFR_TypeD_subunitD Qui 47.8 13 0.00029 30.6 2.0 41 98-147 44-84 (115)
27 PF10520 Kua-UEV1_localn: Kua- 45.6 40 0.00087 29.8 4.8 46 96-156 96-141 (178)
28 PRK05470 fumarate reductase su 45.6 14 0.0003 30.7 1.8 41 98-147 48-88 (118)
29 PF04116 FA_hydroxylase: Fatty 29.2 16 0.00035 28.1 -0.3 13 131-144 22-34 (114)
30 COG3080 FrdD Fumarate reductas 28.2 14 0.0003 30.4 -0.9 15 134-148 75-89 (118)
31 PLN02434 fatty acid hydroxylas 27.6 1.8E+02 0.004 26.8 6.3 13 97-109 97-109 (237)
32 PLN02601 beta-carotene hydroxy 25.6 1.1E+02 0.0024 29.2 4.4 21 89-109 142-162 (303)
33 PRK15087 hemolysin; Provisiona 24.8 2.4E+02 0.0052 25.3 6.4 26 90-118 60-85 (219)
No 1
>KOG1600|consensus
Probab=100.00 E-value=2.8e-88 Score=625.88 Aligned_cols=229 Identities=53% Similarity=0.983 Sum_probs=225.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHH
Q psy11084 46 KEYRIVPVWRNIVLFAYLHLAALYGAYLIFTSAKLQTTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNT 125 (277)
Q Consensus 46 ~~~~i~~~W~~vi~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~ 125 (277)
.++++ +|+|++.++.+|++++||++..++.++|.|++|++++|.+++||||+||||+||||||||++|||++||+|++
T Consensus 34 ~~~~~--~w~nv~~~~~l~~~a~ygl~~~~~~~~w~t~~~~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~ 111 (321)
T KOG1600|consen 34 WKREL--VWRNVVLFSALHIVALYGLLAPPFSAKWETLLFAFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNT 111 (321)
T ss_pred hhcch--hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhceeeeehhhhcccccccCCccHHHHHHHHHH
Confidence 68899 9999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred HhcccccchhhccccccccCCCCCCCCCCccccchhhhhhhhhccCChhHhhhcCCCCccccccCceeeehhhhhhhHHH
Q psy11084 126 LAFQNHVYEWARDHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKHPDVIAKGQGIDLSDLKADKLVMFQKKHYMKLMP 205 (277)
Q Consensus 126 ~a~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~~rGf~~sH~GWll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~k~y~~l~~ 205 (277)
+|+||+|++||||||.||||||||+|||||+||||||||||+++++||+++++|+++|++||++||++|||+|+|.++++
T Consensus 112 ~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~l~~ 191 (321)
T KOG1600|consen 112 LAFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVKECGGRLDVSDLEADPVVRFQRKTYLLLML 191 (321)
T ss_pred HhccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHHhhcCcCChhHhhhCceeeehhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccceechhhhHHHHHHHHHHHHhhhhhheeecccccccCCCCCCCCCCCccchhhhhhccCC
Q psy11084 206 VICFVLPTVIPMVAWSESFLNAWFVATMFRYTLTLNVTWLVNSAAHMWGQRPYDKFISPAENLGVAIFAMGE 277 (277)
Q Consensus 206 ~~~~llP~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~rpy~~~~~s~nn~~vallt~GE 277 (277)
++||+||+++|+++||+++.++|+++ ++|+++++|+||||||+||+||.||||++++|+||++++++|+||
T Consensus 192 ~~~f~lp~~~p~~~~~~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GE 262 (321)
T KOG1600|consen 192 FFCFLLPTLGPMYFWGEGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGE 262 (321)
T ss_pred HHHHHHHHhCcceeeeecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEecc
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999999
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=1.3e-69 Score=505.57 Aligned_cols=215 Identities=25% Similarity=0.426 Sum_probs=192.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHHh
Q psy11084 48 YRIVPVWRNIVLFAYLHLAALYGAYLIFTSAKLQTTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLA 127 (277)
Q Consensus 48 ~~i~~~W~~vi~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a 127 (277)
.++ .|.+++.++++|++++++.+ .++|.++++++++|+++++|||+|||||||||||||++|+|++|+++|++|
T Consensus 29 ~~~--~~~~~~~~~~~h~~~l~~~~----~~~w~~~~~~~~~~~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a 102 (299)
T PLN02220 29 TRL--DVVRASAVGTVHFLCLLAPF----NYKWEALRFGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFA 102 (299)
T ss_pred cee--hhHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHH
Confidence 457 88899999999999998754 368999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhccccccccCCCCCCCCCCccccchhhhhhhhhccCChhHhhhcCCCCccccccCceeeehhhhhhhHHHHH
Q psy11084 128 FQNHVYEWARDHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKHPDVIAKGQGIDLSDLKADKLVMFQKKHYMKLMPVI 207 (277)
Q Consensus 128 ~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~~rGf~~sH~GWll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~k~y~~l~~~~ 207 (277)
+||||++|+++||+||+|||||+|||||+||||||||||++.+++++ .++++++|++||++||+++||+|+|...++.+
T Consensus 103 ~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~~~~~-~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~~ 181 (299)
T PLN02220 103 LQGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTSYIR-EKCGGRDNVMDLKQQWFYRFLRKTIGLHILMF 181 (299)
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCcchhh-hhcccccchHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876543 34566789999999999999999987655433
Q ss_pred HHHhccccccceechhhhHHHHHHHHHHHHhhhhhheeecccccccCCCCCCCCCCCccchhhhhhccCC
Q psy11084 208 CFVLPTVIPMVAWSESFLNAWFVATMFRYTLTLNVTWLVNSAAHMWGQRPYDKFISPAENLGVAIFAMGE 277 (277)
Q Consensus 208 ~~llP~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~rpy~~~~~s~nn~~vallt~GE 277 (277)
++ ..++||+. ..++|++++|+++++|+||+|||+||+||+||||++|+||||+++|++|+||
T Consensus 182 ~~------~~~~~gg~--~~~~wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GE 243 (299)
T PLN02220 182 WT------LLYLWGGL--PYLTWGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGE 243 (299)
T ss_pred HH------HHHHHhHH--HHHHHHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccc
Confidence 33 23456652 3467788999999999999999999999999999999999999999999999
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=4.5e-63 Score=450.31 Aligned_cols=223 Identities=29% Similarity=0.479 Sum_probs=195.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHH
Q psy11084 47 EYRIVPVWRNIVLFAYLHLAALYGAYLIFTSAKLQTTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTL 126 (277)
Q Consensus 47 ~~~i~~~W~~vi~~~~lhl~al~g~~~~~~~~~w~t~~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~ 126 (277)
+.++-+.|.++++|+..++.++..++. -+...++.+++++++|.++++|||+|+||||||||||+++++|++|+++|++
T Consensus 13 ~~~~~~~~~~v~~f~~~~i~~~l~~~~-~~~~~~~~~i~~l~~y~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l 91 (289)
T COG1398 13 LPKYPYHWNNVLFFIGPLIVAYLAFYP-DFFSWLAELIFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGAL 91 (289)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHhccceeeeehhhhhhhhhcccchHHHHHHHHHHHh
Confidence 334422699999999999988865432 1224567788899999999999999999999999999999999999999999
Q ss_pred hcccccchhhccccccccCCCCCCCC-CCccccchhhhhhhhhccCChhHhhhcCCCCccccccCceeeehhhhhhhHHH
Q psy11084 127 AFQNHVYEWARDHRVHHKYSETNADP-HNAKRGFFFSHVGWLMCRKHPDVIAKGQGIDLSDLKADKLVMFQKKHYMKLMP 205 (277)
Q Consensus 127 a~Qgs~~~Wv~~HR~HHk~sDt~~DP-Hs~~rGf~~sH~GWll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~k~y~~l~~ 205 (277)
++||++++|+++||+||+|||||.|| |+.+|||||||+||++..+. + +....+..|+.+|+..+||+|++...++
T Consensus 92 ~~~G~~~~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~~~-~---~~~r~~~~~~~kd~~~~~~~r~~~~~~~ 167 (289)
T COG1398 92 TTQGPAIEWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSA-E---AKDRETIQKLGKDIPLDWQHRNLYLIAL 167 (289)
T ss_pred hcCCCceeHHHHHHHhhcccCCCCCCCccccccchhhhcceeeecch-h---hcChhHHHHhCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999 55579999999999997543 2 2223567899999999999999999999
Q ss_pred HHHHHhccccccceechhhhHHHHHHHHHHHHhhhhhheeecccccccCCCCCCCCCCCccchhhhhhccCC
Q psy11084 206 VICFVLPTVIPMVAWSESFLNAWFVATMFRYTLTLNVTWLVNSAAHMWGQRPYDKFISPAENLGVAIFAMGE 277 (277)
Q Consensus 206 ~~~~llP~~i~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~rpy~~~~~s~nn~~vallt~GE 277 (277)
++.+++|. +..+++|+. .+++|+++.|+++++|+||+|||+||.+||||||.+|+|||+|++||+|+||
T Consensus 168 l~~i~~~l-~~~~~~gg~--~gl~~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GE 236 (289)
T COG1398 168 LMQIVLPL-FIGYALGGW--LGLIWGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGE 236 (289)
T ss_pred HHHHHHHH-HHHHHhcch--hHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeeccc
Confidence 99999994 445577763 4589999999999999999999999999999999999999999999999999
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=3.2e-55 Score=382.12 Aligned_cols=136 Identities=51% Similarity=0.955 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCcccc
Q psy11084 79 KLQTTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNADPHNAKRG 158 (277)
Q Consensus 79 ~w~t~~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~~rG 158 (277)
+|.++++++++|+++++|||+|||||||||||||++|+|++|+++|++|+||||++|+++||+||+|||||+|||||+||
T Consensus 1 ~~~~~~~~~~~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~g 80 (178)
T cd03505 1 SWATLVFLVLYYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRG 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhccCChhHhhhcCCCCccccccCceeeehhhhhhhHHHHHHHHhccccccceechhhhHHHHHHHHHHHHh
Q psy11084 159 FFFSHVGWLMCRKHPDVIAKGQGIDLSDLKADKLVMFQKKHYMKLMPVICFVLPTVIPMVAWSESFLNAWFVATMFRYTL 238 (277)
Q Consensus 159 f~~sH~GWll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~k~y~~l~~~~~~llP~~i~~~~wg~~~~~~~~~~~~~R~~l 238 (277)
|||||+||+ ++++|+++
T Consensus 81 f~~~h~gW~---------------------------------------------------------------~~~~r~~~ 97 (178)
T cd03505 81 FWFSHVGWL---------------------------------------------------------------GGLLRIVL 97 (178)
T ss_pred cHHHHHhhH---------------------------------------------------------------HHHHHHHH
Confidence 999999999 57899999
Q ss_pred hhhhheeecccccccCCCCCCCCCCCccchhhhhhccCC
Q psy11084 239 TLNVTWLVNSAAHMWGQRPYDKFISPAENLGVAIFAMGE 277 (277)
Q Consensus 239 ~~h~tw~VNS~aH~~G~rpy~~~~~s~nn~~vallt~GE 277 (277)
++|+||+|||+||++|+||||++|+|+||++++++|+||
T Consensus 98 ~~h~t~~VNs~~H~~G~r~~~~~~~s~n~~~~~llt~GE 136 (178)
T cd03505 98 VLHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGE 136 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHccc
Confidence 999999999999999999999999999999999999999
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.17 E-value=1.4e-10 Score=100.74 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=61.1
Q ss_pred HHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCC-CCCCccc
Q psy11084 88 LMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNA-DPHNAKR 157 (277)
Q Consensus 88 ~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~-DPHs~~r 157 (277)
++.....++.+.+.++-.+|++|..++++..++..+.++..+++...|...|+.||+++++++ ||.+...
T Consensus 10 ~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 10 LLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 344455567888999999999999999999999888888888899999999999999999988 9998865
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=98.88 E-value=2e-09 Score=85.93 Aligned_cols=65 Identities=34% Similarity=0.535 Sum_probs=54.3
Q ss_pred HHHHhhcccchhehhhhcccccc-cChHHHHHHHHHHHHhcccccchhhccccccccCCCCC-CCCCCc
Q psy11084 89 MYQAGATGITAGAHRLWAHRAYK-AKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETN-ADPHNA 155 (277)
Q Consensus 89 ~~~~~~lGiT~G~HRl~sHRSfk-a~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~-~DPHs~ 155 (277)
+.++.+++.....|++ +|++|. .++.-+++..+++. .+..++..|...|..||++++++ +||.++
T Consensus 7 ~~~~~~~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 7 LGLLGGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 3344444889999999 999998 55666777777776 78889999999999999999998 999999
No 7
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=97.93 E-value=9.5e-06 Score=71.62 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCC-CCCCCCccccchhh
Q psy11084 84 IFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSET-NADPHNAKRGFFFS 162 (277)
Q Consensus 84 ~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt-~~DPHs~~rGf~~s 162 (277)
+++++......++..++ |+++..++++..++..+.......|...|-..|..||+++++ +.||--.....+..
T Consensus 6 ~~g~~~~~~~~~~Hd~~------H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~ 79 (204)
T cd03506 6 LLGLFWAQGGFLAHDAG------HGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLAR 79 (204)
T ss_pred HHHHHHHHHHHHHHhcc------CccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEe
Confidence 34444444455778887 999999999999888887777778999999999999999985 59998765443311
Q ss_pred hhhhhhccCChhHhhhcCCCCccccccCceeeehhhhhhhHHH
Q psy11084 163 HVGWLMCRKHPDVIAKGQGIDLSDLKADKLVMFQKKHYMKLMP 205 (277)
Q Consensus 163 H~GWll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~k~y~~l~~ 205 (277)
..+.. ..|....+..++|..++.+++.
T Consensus 80 --------~~~~~--------~~~~~~~~~~~~q~~~~~~~~~ 106 (204)
T cd03506 80 --------SEPAF--------GKDQKKRFLHRYQHFYFFPLLA 106 (204)
T ss_pred --------ccccc--------ccchHHHHHHHHHHHHHHHHHH
Confidence 11110 1333445667778777765543
No 8
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=97.38 E-value=0.0041 Score=56.51 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=31.7
Q ss_pred ccccc-cChHHHHHHHHHH-HHhcccccchhhccccccccCCCCCCCCC
Q psy11084 107 HRAYK-AKTPLKLILLLFN-TLAFQNHVYEWARDHRVHHKYSETNADPH 153 (277)
Q Consensus 107 HRSfk-a~~~lr~~L~~~g-~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPH 153 (277)
|+++- .++.+...+..+. .+..-.+-..|-+.|..||+++.++.||=
T Consensus 55 Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~~DpD 103 (225)
T cd03513 55 HGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPD 103 (225)
T ss_pred hhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 76663 3555555544332 33333477788999999999999888874
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=97.29 E-value=0.00084 Score=62.12 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=40.4
Q ss_pred cccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCCCC
Q psy11084 106 AHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE-TNADPHN 154 (277)
Q Consensus 106 sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD-t~~DPHs 154 (277)
+|+++..++++..++..+.++....+...|...|..||+++. +++||-.
T Consensus 66 ~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 66 VHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 499988899988888777666666788899999999999994 6688854
No 10
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=97.14 E-value=0.0042 Score=58.96 Aligned_cols=77 Identities=27% Similarity=0.331 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHhh-cccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCccc
Q psy11084 79 KLQTTIFAILMYQAGA-TGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNADPHNAKR 157 (277)
Q Consensus 79 ~w~t~~~~~~~~~~~~-lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~~r 157 (277)
-|..+.+++.+.++.+ +|+.+. |-+ .||+-+.++.+-.++. ... +..-.-.+.||.||+|..|++||=++++
T Consensus 69 ~~~~~~~~~~~G~~~g~i~~~~a-Hel-~Hr~~~lnr~lg~~~~---~~~--~~~~~~~~H~~~HH~~v~tp~DP~tar~ 141 (314)
T cd03512 69 ALEKVGLILSLGLLSGVIGINTA-HEL-IHRRSRLERWLGKLLL---ASL--LYGHFAIEHVRGHHRYVATPEDPATARR 141 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-Hhc-cCCCChHHHHHHHHHH---HHh--cccceeeeecccCCCCCCCCCCcccccc
Confidence 3344555555555554 666643 433 3665444444433322 112 2222334445689999999999999976
Q ss_pred cc-hhh
Q psy11084 158 GF-FFS 162 (277)
Q Consensus 158 Gf-~~s 162 (277)
|= +|+
T Consensus 142 ge~~y~ 147 (314)
T cd03512 142 GESFYR 147 (314)
T ss_pred CccHHH
Confidence 54 444
No 11
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=96.54 E-value=0.0086 Score=53.92 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred hehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCC-CCCCCC
Q psy11084 100 GAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSET-NADPHN 154 (277)
Q Consensus 100 G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt-~~DPHs 154 (277)
-.|=. .|+++-.++.+..++..+.......+...|...|..||+++.+ ++||--
T Consensus 50 l~He~-~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 50 LGHDC-GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred Hhhcc-CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 34443 5999988888777766654444446778999999999999876 677543
No 12
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=96.53 E-value=0.0086 Score=60.76 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcccchhehhhhcccccccChHHHHHHHHH-HHHhcccccchhhccccccccCCCCCC
Q psy11084 82 TTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLF-NTLAFQNHVYEWARDHRVHHKYSETNA 150 (277)
Q Consensus 82 t~~~~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~-g~~a~Qgs~~~Wv~~HR~HHk~sDt~~ 150 (277)
.++++++...++.++..+| |.++..++++.-++..+ +.+..-.|..+|-..|..||.++...+
T Consensus 240 a~llgl~~~q~g~l~HD~~------H~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 240 ACMMALCFQQCGWLSHDFL------HNQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHHHHHHHHHHHHhcc------cccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCC
Confidence 3344444455555787777 88888777777776544 555555789999999999999998754
No 13
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=96.45 E-value=0.0081 Score=60.26 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=34.3
Q ss_pred hcccchhehhhhcccccccChHHHHHHH-HHHHHhcccccchhhccccccccCCCC
Q psy11084 94 ATGITAGAHRLWAHRAYKAKTPLKLILL-LFNTLAFQNHVYEWARDHRVHHKYSET 148 (277)
Q Consensus 94 ~lGiT~G~HRl~sHRSfka~~~lr~~L~-~~g~~a~Qgs~~~Wv~~HR~HHk~sDt 148 (277)
.++..++ |+++-.++++--++. +++.+..-.|..+|-..|-.||.|+..
T Consensus 177 ~l~HDa~------H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~ 226 (485)
T PLN03199 177 WLAHDFL------HHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNL 226 (485)
T ss_pred HHHHhhh------hhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCc
Confidence 3555555 777766666655544 455554446889999999999999984
No 14
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=96.27 E-value=0.015 Score=55.77 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=44.4
Q ss_pred hhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCC
Q psy11084 93 GATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNADPH 153 (277)
Q Consensus 93 ~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPH 153 (277)
..+|..+| |+||.-++++--.+.-+.+...-.++..|-..|..||+++.+++||.
T Consensus 79 ~~v~Hd~~------Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~ 133 (343)
T COG3239 79 FSVGHDCG------HGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDP 133 (343)
T ss_pred Hhhhhhcc------ccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCH
Confidence 34788887 99998888887777666655555678888888999999999988884
No 15
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=96.23 E-value=0.011 Score=52.83 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=37.1
Q ss_pred ccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCC-CCCCCc
Q psy11084 107 HRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETN-ADPHNA 155 (277)
Q Consensus 107 HRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~-~DPHs~ 155 (277)
|+++.-++++-.++..+.++..-.|...|...|..||+++.++ +||-..
T Consensus 47 H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 47 HKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred cccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 8888777777777666554444457789999999999999874 888544
No 16
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=96.21 E-value=0.008 Score=52.30 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=36.4
Q ss_pred ccccccChHHHHHHH-HHHHHhcccccchhhccccccccCCCCCCCCCCc
Q psy11084 107 HRAYKAKTPLKLILL-LFNTLAFQNHVYEWARDHRVHHKYSETNADPHNA 155 (277)
Q Consensus 107 HRSfka~~~lr~~L~-~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~ 155 (277)
|+++-.++.+..++. ++.+...-.+...|-..|..||+++.+++||--.
T Consensus 44 H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 44 HGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred HhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 777766777766665 3333333346679999999999999999998765
No 17
>PLN02498 omega-3 fatty acid desaturase
Probab=95.90 E-value=0.035 Score=55.36 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=42.5
Q ss_pred HhhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCCC
Q psy11084 92 AGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE-TNADPH 153 (277)
Q Consensus 92 ~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD-t~~DPH 153 (277)
+..+|..+| |++|--++++.-++..+......-+...|-..|+.||+++. -|+||-
T Consensus 164 L~vl~HDcg------Hgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 164 LFVLGHDCG------HGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred HHHHHHhcc------ccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 334666666 99998888887777665555556788899999999999997 366664
No 18
>PLN02579 sphingolipid delta-4 desaturase
Probab=95.79 E-value=0.029 Score=53.67 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred cchhHHHHH-HHHHHHHhhcccchhehhhhcccccccChHHHHHHHHHHHH-hcccccchhhccccccccCCCC-CCCCC
Q psy11084 77 SAKLQTTIF-AILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTL-AFQNHVYEWARDHRVHHKYSET-NADPH 153 (277)
Q Consensus 77 ~~~w~t~~~-~~~~~~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~-a~Qgs~~~Wv~~HR~HHk~sDt-~~DPH 153 (277)
..+|...++ +.++..+.+.++-+..|=. +|+++-.++++-.++..+..+ .+.....+|-+.|..||+++.. +.||-
T Consensus 67 ~~~w~~~l~~a~~~~g~~~~~lf~~~HD~-~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~D 145 (323)
T PLN02579 67 DAGWPKILLVAYFFGGFLNHNLFLAIHEL-SHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMD 145 (323)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCC
Confidence 345544433 2333322223333444432 477777788888777766543 4443445798899999999963 45776
Q ss_pred Cc
Q psy11084 154 NA 155 (277)
Q Consensus 154 s~ 155 (277)
-+
T Consensus 146 i~ 147 (323)
T PLN02579 146 IP 147 (323)
T ss_pred CC
Confidence 55
No 19
>PLN02598 omega-6 fatty acid desaturase
Probab=95.79 E-value=0.035 Score=54.99 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=36.2
Q ss_pred ccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC-CCCCC
Q psy11084 107 HRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE-TNADP 152 (277)
Q Consensus 107 HRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD-t~~DP 152 (277)
|++|--++++.-++..+..+..--+...|-..|+.||+++. .+.||
T Consensus 148 H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 148 HNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 99998888888776655444344688899999999999997 57785
No 20
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=95.73 E-value=0.029 Score=52.75 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=30.9
Q ss_pred cccccccChHHHHHHHHHHHHhcccccc--hhhccccccccCCCCC-CCCCCc
Q psy11084 106 AHRAYKAKTPLKLILLLFNTLAFQNHVY--EWARDHRVHHKYSETN-ADPHNA 155 (277)
Q Consensus 106 sHRSfka~~~lr~~L~~~g~~a~Qgs~~--~Wv~~HR~HHk~sDt~-~DPHs~ 155 (277)
+|+++-.++.+-.++..+.. ...|.+. .|-..|..||+++.++ .||=-+
T Consensus 67 ~H~~~f~~~~~N~~~g~~~~-~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~ 118 (289)
T cd03508 67 SHNLAFGKPLWNRLFGIFAN-LPIGVPYSISFKKYHLEHHRYLGEDGLDTDIP 118 (289)
T ss_pred HHHhhcCChHHHHHHHHHHH-HHhcCChhhHHHHHHHHhccCCCCCCCCCCcc
Confidence 37766666666666555433 2233333 4788999999999864 476533
No 21
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=95.42 E-value=0.052 Score=50.96 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=35.2
Q ss_pred cccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC---CCCCCCCc
Q psy11084 106 AHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE---TNADPHNA 155 (277)
Q Consensus 106 sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD---t~~DPHs~ 155 (277)
+|.++--++++--++..+....+ -+...|-..|-.||++++ .|.||-+.
T Consensus 49 ~Hg~~~~~~~~N~~~g~~~~~l~-~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~ 100 (288)
T cd03509 49 LHGHPTRSRWVNEALGYPPLALW-YPYTRYRDTHLAHHRDEDLTDPGDDPESN 100 (288)
T ss_pred hccCcccChHHHHHHHHHHHHHh-cCHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 48998888888877765421112 355699999999999985 35788654
No 22
>PLN02505 omega-6 fatty acid desaturase
Probab=95.20 E-value=0.096 Score=51.24 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=34.4
Q ss_pred ccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCC-CCCC
Q psy11084 107 HRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSET-NADP 152 (277)
Q Consensus 107 HRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt-~~DP 152 (277)
|+||-.++++.-++..+.......+...|-..|+.||+++.. +.||
T Consensus 109 H~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~ 155 (381)
T PLN02505 109 HHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDE 155 (381)
T ss_pred chhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCc
Confidence 888888877776664333223347888999999999999974 6776
No 23
>KOG4232|consensus
Probab=86.91 E-value=7.5 Score=38.75 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHhhcccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCC-CCCCCCcc
Q psy11084 91 QAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSET-NADPHNAK 156 (277)
Q Consensus 91 ~~~~lGiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt-~~DPHs~~ 156 (277)
..+-++...|- ++-||.++|=.++=.+.+...-..|+-||...|-.||.++.- +.||=.-.
T Consensus 156 Qs~~l~Hd~gH-----~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~ 217 (430)
T KOG4232|consen 156 QSGWLQHDYGH-----LSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDF 217 (430)
T ss_pred HHHHHhccccc-----ccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccc
Confidence 34447777662 334666666555544444444445999999999999999984 67776543
No 24
>KOG2987|consensus
Probab=62.00 E-value=14 Score=34.93 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=60.2
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHhhcccchhehhhhcccccccChHH--H
Q psy11084 41 KETPEKEYRIVPVWRNIVLFAYLHLAALYGAYLIFTSAKLQTTIFA-ILMYQAGATGITAGAHRLWAHRAYKAKTPL--K 117 (277)
Q Consensus 41 ~~~~~~~~~i~~~W~~vi~~~~lhl~al~g~~~~~~~~~w~t~~~~-~~~~~~~~lGiT~G~HRl~sHRSfka~~~l--r 117 (277)
|+...+.... .|. ++.++++.+++.+ + .-...|.-+++. .+..-+..=..|+..|-+----+|..++|+ |
T Consensus 34 k~Lfg~dp~~--kwv-v~~~Vi~Q~~~~~---l-l~dl~W~~il~~AYf~gg~iNhsl~LAIHeiSHN~aFg~~rpl~NR 106 (324)
T KOG2987|consen 34 KSLFGPDPNL--KWV-VLGMVILQILAAY---L-LRDLDWKWILFIAYFFGGFINHSLTLAIHEISHNLAFGTNRPLYNR 106 (324)
T ss_pred HHHhCCCcch--HHH-HHHHHHHHHHHHH---H-HhcccHHHHHHHHHHhhhhhchhHHHHHHHhhhhhhcccCchHHHH
Confidence 5556666667 673 4556666665553 3 334677665552 222223334667788887666799997775 4
Q ss_pred HHHHHHHHHhcccccchhhccccccccCCCCC
Q psy11084 118 LILLLFNTLAFQNHVYEWARDHRVHHKYSETN 149 (277)
Q Consensus 118 ~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~ 149 (277)
.+-++++--.|--=.+..-+-|-.||+|...|
T Consensus 107 ~~g~fANLPigvP~siSFkkYHleHHry~G~D 138 (324)
T KOG2987|consen 107 IFGFFANLPIGVPMSISFKKYHLEHHRYLGVD 138 (324)
T ss_pred HHHHhhcCcccCceeeeehhhhhHHhHhcCCc
Confidence 44444333222222345667899999998654
No 25
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=56.49 E-value=20 Score=30.95 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHH----Hhhhc-----chhHHHHHHHHHHHHhhcccchh
Q psy11084 54 WRNIVLFAYLHLAALYGAY----LIFTS-----AKLQTTIFAILMYQAGATGITAG 100 (277)
Q Consensus 54 W~~vi~~~~lhl~al~g~~----~~~~~-----~~w~t~~~~~~~~~~~~lGiT~G 100 (277)
=+.+++++.++.+.-++.+ ++... ..|.+++..++++.++.+|||-|
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYG 117 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYG 117 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhh
Confidence 4566677777665444432 22221 56778888888888999999988
No 26
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=47.84 E-value=13 Score=30.64 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=32.3
Q ss_pred chhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy11084 98 TAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE 147 (277)
Q Consensus 98 T~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD 147 (277)
...|+|..+ |-.++.-+.++..+-.+ --|...||.||---|
T Consensus 44 a~~y~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihh~lHD 84 (115)
T cd00547 44 ALSYDRIIA---FAQSWIGKLFLLVLIIL------PMWHAMHRIHHGLHD 84 (115)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHhhhc
Confidence 678999876 88888888877665533 369999999998777
No 27
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=45.65 E-value=40 Score=29.80 Aligned_cols=46 Identities=26% Similarity=0.492 Sum_probs=25.9
Q ss_pred ccchhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCCCCCCCCCcc
Q psy11084 96 GITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNADPHNAK 156 (277)
Q Consensus 96 GiT~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sDt~~DPHs~~ 156 (277)
..|--.|+ |||.-++-++++++ |-=+|-+. | =+.||.||+ .||+..
T Consensus 96 ~~tnq~Hk-WsH~~~~~P~~V~~-LQ~~gill---s----r~~H~~HH~------aPh~~~ 141 (178)
T PF10520_consen 96 AFTNQFHK-WSHTYKSLPPWVRF-LQDAGILL---S----RKHHRIHHV------APHDTN 141 (178)
T ss_pred HHHHHHHH-HHcCCCCCCHHHHH-HHHCCccc---C----chhhhcccc------CcccCC
Confidence 33444676 89997774444443 32222222 2 357888886 567664
No 28
>PRK05470 fumarate reductase subunit D; Provisional
Probab=45.55 E-value=14 Score=30.66 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=31.7
Q ss_pred chhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy11084 98 TAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE 147 (277)
Q Consensus 98 T~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD 147 (277)
...|.|..+ |-.++.-+.++..+-.+ --|...||.||---|
T Consensus 48 a~sy~~i~a---Fa~s~iG~l~ll~~i~l------plWh~~HRihHglHD 88 (118)
T PRK05470 48 ALSYERVLA---FAQSFIGKLFLLLMIVL------PLWCGLHRIHHGMHD 88 (118)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 577899876 88888888877665533 359999999998766
No 29
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=29.20 E-value=16 Score=28.11 Aligned_cols=13 Identities=46% Similarity=0.963 Sum_probs=9.1
Q ss_pred ccchhhcccccccc
Q psy11084 131 HVYEWARDHRVHHK 144 (277)
Q Consensus 131 s~~~Wv~~HR~HHk 144 (277)
.+.-| +.|+.||+
T Consensus 22 ~~~l~-~~H~~HH~ 34 (114)
T PF04116_consen 22 IPFLW-RIHKVHHS 34 (114)
T ss_pred CchHH-HHHHHHhC
Confidence 33456 78999993
No 30
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=28.25 E-value=14 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=12.4
Q ss_pred hhhccccccccCCCC
Q psy11084 134 EWARDHRVHHKYSET 148 (277)
Q Consensus 134 ~Wv~~HR~HHk~sDt 148 (277)
-|.+.||.||.-.|-
T Consensus 75 lw~a~HRihHgmhdl 89 (118)
T COG3080 75 LWCALHRIHHGMHDL 89 (118)
T ss_pred HHHHHHHHHhhhhhe
Confidence 488999999987764
No 31
>PLN02434 fatty acid hydroxylase
Probab=27.63 E-value=1.8e+02 Score=26.81 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=10.6
Q ss_pred cchhehhhhcccc
Q psy11084 97 ITAGAHRLWAHRA 109 (277)
Q Consensus 97 iT~G~HRl~sHRS 109 (277)
+.-..||..-|.-
T Consensus 97 ~EY~lHRflfH~~ 109 (237)
T PLN02434 97 LEYILHRFLFHIK 109 (237)
T ss_pred HHHHHHHHHHcCC
Confidence 4567899999974
No 32
>PLN02601 beta-carotene hydroxylase
Probab=25.59 E-value=1.1e+02 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.056 Sum_probs=16.0
Q ss_pred HHHHhhcccchhehhhhcccc
Q psy11084 89 MYQAGATGITAGAHRLWAHRA 109 (277)
Q Consensus 89 ~~~~~~lGiT~G~HRl~sHRS 109 (277)
..++.+=++.-..||+.-|-+
T Consensus 142 gtfvgMEf~Aw~aHKYvMHG~ 162 (303)
T PLN02601 142 GAAVGMEFWARWAHRALWHDS 162 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666778888999999965
No 33
>PRK15087 hemolysin; Provisional
Probab=24.82 E-value=2.4e+02 Score=25.33 Aligned_cols=26 Identities=19% Similarity=-0.155 Sum_probs=18.0
Q ss_pred HHHhhcccchhehhhhcccccccChHHHH
Q psy11084 90 YQAGATGITAGAHRLWAHRAYKAKTPLKL 118 (277)
Q Consensus 90 ~~~~~lGiT~G~HRl~sHRSfka~~~lr~ 118 (277)
..+.+++.|.-||.+-. -+.++.+|.
T Consensus 60 s~~~l~~~StlYH~~~~---~~~~~~~~r 85 (219)
T PRK15087 60 SMILLFLASTLYHAIPH---QRAKRWLKK 85 (219)
T ss_pred HHHHHHHHHHHHHCCCc---hHHHHHHHH
Confidence 34566899999999863 345566663
Done!