Query psy11084
Match_columns 277
No_of_seqs 178 out of 1137
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:35:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 26.6 8.4 0.00029 31.4 -1.2 23 146-168 25-47 (141)
2 1kf6_D Fumarate reductase 13 k 15.1 87 0.003 24.9 2.4 40 99-147 50-89 (119)
3 1v54_G Cytochrome C oxidase po 9.3 2E+02 0.007 21.3 2.7 21 53-73 15-35 (85)
4 3j21_L 50S ribosomal protein L 8.9 1.6E+02 0.0053 24.0 2.1 21 140-160 42-64 (147)
5 2byg_A Channel associated prot 7.6 87 0.003 23.6 0.0 14 142-155 4-18 (117)
6 2y69_G Cytochrome C oxidase po 6.7 3.1E+02 0.011 20.8 2.7 20 53-72 27-46 (97)
7 3b76_A E3 ubiquitin-protein li 6.3 1.1E+02 0.0039 23.1 0.0 17 139-155 2-18 (118)
8 3l4f_D SH3 and multiple ankyri 5.5 1.6E+02 0.0056 22.5 0.6 18 138-155 4-23 (132)
9 1whr_A Hypothetical KIAA1002 p 5.1 1.2E+02 0.004 24.0 -0.5 11 98-108 57-67 (124)
10 3b1s_A Flagellar biosynthetic 7.0 1.5E+02 0.0052 20.1 0.0 11 145-155 14-24 (52)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=26.62 E-value=8.4 Score=31.41 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=18.7
Q ss_pred CCCCCCCCCccccchhhhhhhhh
Q psy11084 146 SETNADPHNAKRGFFFSHVGWLM 168 (277)
Q Consensus 146 sDt~~DPHs~~rGf~~sH~GWll 168 (277)
+|...+|.++++|+||+|+-=..
T Consensus 25 ~~~~k~~~~~k~G~WYAHFdGqw 47 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFDGPW 47 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEETTE
T ss_pred cccccCCCCcccceEEEeeCChh
Confidence 57778888899999999976443
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=15.14 E-value=87 Score=24.91 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=27.9
Q ss_pred hhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy11084 99 AGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE 147 (277)
Q Consensus 99 ~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD 147 (277)
..|.|.. +|-.++.-+.++...-. ---|...||.||---|
T Consensus 50 lsY~~~~---aFa~s~ig~l~ll~~i~------lplWh~~HRihh~lHD 89 (119)
T 1kf6_D 50 LSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp TSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred ccHHHHH---HHHhcHHHHHHHHHHHH------HHHHHHHHHHHHhhhh
Confidence 4677764 57777777777665543 3469999999997655
No 3
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=9.32 E-value=2e+02 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy11084 53 VWRNIVLFAYLHLAALYGAYL 73 (277)
Q Consensus 53 ~W~~vi~~~~lhl~al~g~~~ 73 (277)
.|+++-+++.++++++.++..
T Consensus 15 ~Wkkis~~va~P~v~l~~~n~ 35 (85)
T 1v54_G 15 TWRFLTFGLALPSVALCTLNS 35 (85)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999988876543
No 4
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=8.86 E-value=1.6e+02 Score=23.97 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=14.6
Q ss_pred cccccCCCCCC-CC-CCccccch
Q psy11084 140 RVHHKYSETNA-DP-HNAKRGFF 160 (277)
Q Consensus 140 R~HHk~sDt~~-DP-Hs~~rGf~ 160 (277)
|.||+++.-+. +| |-|++||-
T Consensus 42 ~~~H~~~~~~ky~p~~~pK~GF~ 64 (147)
T 3j21_L 42 RNKSKWTWTIKYAPDHLGKRGFS 64 (147)
T ss_dssp SSSSSSSCSSSSCSCCSCCCSCC
T ss_pred cCcccEEEEeecCCCcCCcCCCC
Confidence 47787776543 34 88899984
No 5
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=7.62 E-value=87 Score=23.56 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=0.0
Q ss_pred cccCC-CCCCCCCCc
Q psy11084 142 HHKYS-ETNADPHNA 155 (277)
Q Consensus 142 HHk~s-Dt~~DPHs~ 155 (277)
||.++ +.+.||||-
T Consensus 4 ~~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 4 HHHHSSGVDLGTENL 18 (117)
T ss_dssp ---------------
T ss_pred cccccCccCCCCccc
Confidence 34444 468999987
No 6
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.70 E-value=3.1e+02 Score=20.85 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy11084 53 VWRNIVLFAYLHLAALYGAY 72 (277)
Q Consensus 53 ~W~~vi~~~~lhl~al~g~~ 72 (277)
.|+++-+++.++.+++.++.
T Consensus 27 ~WkkiS~~va~P~v~l~~~n 46 (97)
T 2y69_G 27 TWRFLTFGLALPSVALCTLN 46 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 69999999999988887653
No 7
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=6.25 E-value=1.1e+02 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=0.7
Q ss_pred ccccccCCCCCCCCCCc
Q psy11084 139 HRVHHKYSETNADPHNA 155 (277)
Q Consensus 139 HR~HHk~sDt~~DPHs~ 155 (277)
|..||--++.+.||||.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 55566666789999976
No 8
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=5.53 E-value=1.6e+02 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=4.3
Q ss_pred cccccccCCC--CCCCCCCc
Q psy11084 138 DHRVHHKYSE--TNADPHNA 155 (277)
Q Consensus 138 ~HR~HHk~sD--t~~DPHs~ 155 (277)
.|..||.+.+ ...||||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~s~ 23 (132)
T 3l4f_D 4 SHHHHHHSQDPLVPRGSGSD 23 (132)
T ss_dssp ---------------CCSCC
T ss_pred chhhhhhhcCCCccCCCCCC
Confidence 4666777777 47888887
No 9
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=5.11 E-value=1.2e+02 Score=24.00 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=9.3
Q ss_pred chhehhhhccc
Q psy11084 98 TAGAHRLWAHR 108 (277)
Q Consensus 98 T~G~HRl~sHR 108 (277)
.--|||+.+||
T Consensus 57 mnSy~RllvHr 67 (124)
T 1whr_A 57 MTSYHRMLLHR 67 (124)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 35699999998
No 10
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=6.96 E-value=1.5e+02 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=7.7
Q ss_pred CCCCCCCCCCc
Q psy11084 145 YSETNADPHNA 155 (277)
Q Consensus 145 ~sDt~~DPHs~ 155 (277)
|-|+|+||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 3b1s_A 14 YKQLEGHPEVK 24 (52)
Confidence 45778888843
Done!