Query psy11084
Match_columns 277
No_of_seqs 178 out of 1137
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 17:35:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11084.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11084hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 30.6 30 0.0022 25.7 4.5 40 99-147 50-89 (119)
2 d1v54g_ f.23.2.1 (G:) Mitochon 12.8 62 0.0045 22.4 2.7 19 53-71 15-33 (84)
3 d1qlsa_ a.39.1.2 (A:) Calcycli 10.5 34 0.0025 24.0 0.6 54 142-197 15-73 (95)
4 d1k8ua_ a.39.1.2 (A:) Calcycli 7.9 32 0.0024 23.5 -0.5 52 142-197 15-71 (89)
5 d1xk4c1 a.39.1.2 (C:4-86) Calc 6.0 49 0.0035 22.5 -0.4 54 142-197 16-75 (83)
6 d3cr5x1 a.39.1.2 (X:0-89) Calc 5.8 49 0.0036 22.8 -0.4 54 142-197 15-73 (90)
7 d1jb0i_ f.23.17.1 (I:) Subunit 5.1 61 0.0044 19.1 -0.2 13 203-215 14-26 (38)
8 d1ksoa_ a.39.1.2 (A:) Calcycli 5.0 53 0.0039 22.5 -0.7 54 142-197 15-73 (93)
9 d1j55a_ a.39.1.2 (A:) Calcycli 4.5 77 0.0056 21.9 -0.1 54 142-197 15-73 (94)
10 d2epra1 g.37.1.1 (A:350-384) P 3.8 1E+02 0.0074 17.6 0.0 16 139-154 20-35 (35)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=30.62 E-value=30 Score=25.70 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=28.6
Q ss_pred hhehhhhcccccccChHHHHHHHHHHHHhcccccchhhccccccccCCC
Q psy11084 99 AGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSE 147 (277)
Q Consensus 99 ~G~HRl~sHRSfka~~~lr~~L~~~g~~a~Qgs~~~Wv~~HR~HHk~sD 147 (277)
..|+|.. +|-.++.-+.++..+-.+ --|...||.||.--|
T Consensus 50 ~~y~~i~---aFa~s~iG~l~ll~~i~l------plWh~~HRihHglHD 89 (119)
T d1kf6d_ 50 LSYERVL---AFAQSFIGRVFLFLMIVL------PLWCGLHRMHHAMHD 89 (119)
T ss_dssp TSHHHHH---HHHTSHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cCHHHHH---HHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHhh
Confidence 7788886 366677777776665433 359999999986554
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.81 E-value=62 Score=22.37 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy11084 53 VWRNIVLFAYLHLAALYGA 71 (277)
Q Consensus 53 ~W~~vi~~~~lhl~al~g~ 71 (277)
.|+++.+++.++.++|.++
T Consensus 15 lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5999999999999888764
No 3
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}
Probab=10.48 E-value=34 Score=24.05 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=30.7
Q ss_pred cccCCCCCCCCCCcccc----chhhhhhhhhc-cCChhHhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAKRG----FFFSHVGWLMC-RKHPDVIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~rG----f~~sH~GWll~-~~~p~~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+.+++|+..-.++ +.-+-.+=.+. .+.|+..++ .+..-|...|.-|-|++
T Consensus 15 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~--im~~LD~n~Dg~vdF~E 73 (95)
T d1qlsa_ 15 FQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDR--MMKKLDLDSDGQLDFQE 73 (95)
T ss_dssp HHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHH--HHHHHCTTCSSSBCHHH
T ss_pred HHHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCcHHH
Confidence 48999999999866432 22222222222 244443322 12235566788899988
No 4
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=7.85 E-value=32 Score=23.53 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=28.7
Q ss_pred cccCCCCCCCCCCcc----ccchhhhhhhhhccCChh-HhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAK----RGFFFSHVGWLMCRKHPD-VIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~----rGf~~sH~GWll~~~~p~-~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+|+|+|...-. +-+.-+-.. ...+..++ +.+. +..-|...|-.+-|.+
T Consensus 15 F~kya~~dg~~~~ls~~Elk~Ll~~e~~-~~~~~~~~~~~~~---~~~lD~d~Dg~IdF~E 71 (89)
T d1k8ua_ 15 FHKYSGREGDKHTLSKKELKELIQKELT-IGSKLQDAEIARL---MEDLDRNKDQEVNFQE 71 (89)
T ss_dssp HHHHHTSSSCTTEEEHHHHHHHHHHHSC-CGGGTTSHHHHHH---HHHHHHTTTCEEEHHH
T ss_pred HHHHcccCCCCCeecHHHHHHHHHHHHH-hhccCCHHHHHHH---HHHhcCCCCCCCcHHH
Confidence 479999999998542 222211111 11122333 3221 2346777899999988
No 5
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=5.96 E-value=49 Score=22.55 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCCcccc----chhhhhhhhhcc--CChhHhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAKRG----FFFSHVGWLMCR--KHPDVIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~rG----f~~sH~GWll~~--~~p~~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+.+++|++.=.++ +.-.-++=.+.+ +.|+..++ ....-|...|.-+-|++
T Consensus 16 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~--~m~~LD~n~Dg~vdF~E 75 (83)
T d1xk4c1 16 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEH--IMEDLDTNADKQLSFEE 75 (83)
T ss_dssp HHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHH--HHHHHCTTCSSSBCHHH
T ss_pred HHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHH--HHHHhcCCCCCcCcHHH
Confidence 48999999999987543 333333333322 34443222 12235666788899988
No 6
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=5.84 E-value=49 Score=22.80 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=31.3
Q ss_pred cccCCCCCCCCCCccccch----hhhhhhhhc-cCChhHhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAKRGFF----FSHVGWLMC-RKHPDVIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~rGf~----~sH~GWll~-~~~p~~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+++++|++.-.++=+ -+-++=.+. .+.|+..++ .+..-|...|.-|-|++
T Consensus 15 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~--~m~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 15 FHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK--VMETLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHH--HHHHHCTTSSSSBCHHH
T ss_pred HHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCCHHH
Confidence 4899999999987654322 222222222 234443322 12236677888999988
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=5.10 E-value=61 Score=19.06 Aligned_cols=13 Identities=46% Similarity=1.405 Sum_probs=7.9
Q ss_pred HHHHHHHHhcccc
Q psy11084 203 LMPVICFVLPTVI 215 (277)
Q Consensus 203 l~~~~~~llP~~i 215 (277)
+.+++|+++|.++
T Consensus 14 ~iPvv~wl~p~vv 26 (38)
T d1jb0i_ 14 FIPVVCWLMPTVV 26 (38)
T ss_dssp HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3466677766644
No 8
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=4.96 E-value=53 Score=22.51 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=30.0
Q ss_pred cccCCCCCCCCCCccccchhhhhh-----hhhccCChhHhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAKRGFFFSHVG-----WLMCRKHPDVIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~rGf~~sH~G-----Wll~~~~p~~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+|+++|.+.-.+.=+-.-+. ++-.+..++..++ .+..-|...|..+-|++
T Consensus 15 F~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~--~~~~lD~n~Dg~IdF~E 73 (93)
T d1ksoa_ 15 FQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNK--FMSVLDTNKDCEVDFVE 73 (93)
T ss_dssp HHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHH--HHHHHHHTTTCEECHHH
T ss_pred HHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHH--HHHHHcCCCCCCCcHHH
Confidence 479999999998654322211111 1111223332221 23457788899999988
No 9
>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}
Probab=4.46 E-value=77 Score=21.93 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=30.0
Q ss_pred cccCCCCCCCCCCcccc----chhhhhhhhhc-cCChhHhhhcCCCCccccccCceeeehh
Q psy11084 142 HHKYSETNADPHNAKRG----FFFSHVGWLMC-RKHPDVIAKGQGIDLSDLKADKLVMFQK 197 (277)
Q Consensus 142 HHk~sDt~~DPHs~~rG----f~~sH~GWll~-~~~p~~~~~~~~~d~~Dl~~dp~v~fq~ 197 (277)
=|+|+.+++|++.-.++ +.-+-++=.+. .+.|+..++ ....-|...|..+-|++
T Consensus 15 FhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~--~m~~LD~n~Dg~vdF~E 73 (94)
T d1j55a_ 15 FSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDK--LLKDLDANGDAQVDFSE 73 (94)
T ss_dssp HHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHH--HHHHHCSSSSSSEEHHH
T ss_pred HHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCCHHH
Confidence 48999999999876433 33222222222 233433222 12236777899999999
No 10
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=1e+02 Score=17.60 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=11.3
Q ss_pred ccccccCCCCCCCCCC
Q psy11084 139 HRVHHKYSETNADPHN 154 (277)
Q Consensus 139 HR~HHk~sDt~~DPHs 154 (277)
|-..||-|.++.-|+|
T Consensus 20 hlnrhklshs~ekpys 35 (35)
T d2epra1 20 HLNRHKLSHSGEKPYS 35 (35)
T ss_dssp HHHHHGGGSCSCCCCC
T ss_pred HHHhhhcccCCCCCCC
Confidence 4456777778888875
Done!