RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11084
         (277 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 2.1
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 47/133 (35%)

Query: 138 DHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKHPDVIAKGQGIDLSDLK-ADKLVMFQ 196
           DH    K  +++         +F+SH+G      H           L +++  +++ +F+
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----H-----------LKNIEHPERMTLFR 494

Query: 197 KKHYMKLMPVICFVLPTVIPMVAWSESFLNAWFVATMFRYTLTLNVTW-LVNSAAHMWGQ 255
                                      FL+  F+    R+  T    W    S  +   Q
Sbjct: 495 MV-------------------------FLDFRFLEQKIRHDSTA---WNASGSILNTLQQ 526

Query: 256 -RPYDKFISPAEN 267
            + Y  +I   + 
Sbjct: 527 LKFYKPYICDNDP 539


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 3.9
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 11/48 (22%)

Query: 7   SAPTGVLFEGDSTHTDTMGPIHQQASEDLAEACAKETPEKEYRIVPVW 54
           ++P    F     H+  + P     ++DL +        K+ +I PV+
Sbjct: 424 ASP----F-----HSHLLVPASDLINKDLVKN-NVSFNAKDIQI-PVY 460



 Score = 27.7 bits (61), Expect = 6.0
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 12/52 (23%)

Query: 225 LNAWFVATMFR-YTLT---LNVTWLVNSAAHMWGQRPYDKFIS----PAENL 268
           ++A+  +T  R  TL+   L    LV +A+     +  ++F      P E  
Sbjct: 1   MDAY--ST--RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF 48


>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein
           structure INIT PSI, midwest center for structural
           genomics center, MCSG; 1.85A {Archaeoglobus fulgidus}
           SCOP: a.60.4.3 c.52.1.30
          Length = 199

 Score = 27.7 bits (61), Expect = 3.9
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 136 ARDHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKHPDVIAKG----QGIDLSDLKADK 191
           +  H  HH     N               G+       +VI +G    Q ID+   +  +
Sbjct: 3   SSHHHHHHSSGRENLYFQGHMVARLLEEHGF---ETKTNVIVQGNCVEQEIDVVAERDGE 59

Query: 192 LVMFQKKHYMK 202
             M + K +  
Sbjct: 60  RYMIECKFHNI 70


>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
          2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2
          PDB: 1pjb_A* 1say_A
          Length = 361

 Score = 27.8 bits (63), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 41 KETPEKEYRIVPVWRNIVLFAYLHLAA 67
          KE    EY ++   ++ +LF YLHLAA
Sbjct: 74 KEPLPAEYDLMQ--KDQLLFTYLHLAA 98


>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
          national project on protein structural and function
          analyses; 2.71A {Thermus thermophilus}
          Length = 369

 Score = 27.8 bits (63), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 41 KETPEKEYRIVPVWRNIVLFAYLHLAA 67
          KE   +EY  +     ++LF YLHLAA
Sbjct: 73 KEPLPEEYGFLR--EGLILFTYLHLAA 97


>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
          2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
          2vhz_A* 2vhv_A* 2voe_A 2voj_A*
          Length = 377

 Score = 27.4 bits (62), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 41 KETPEKEYRIVPVWRNIVLFAYLHLAA 67
          KE    EY  +      +LF +LHLAA
Sbjct: 75 KEPIAAEYGRLR--HGQILFTFLHLAA 99


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,298,099
Number of extensions: 249051
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 9
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)