RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11084
         (277 letters)



>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 158

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 117 KLILLLFNTLAFQNHVY-EWARDHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKHPDV 175
           K ++L F  L F      E         ++ + N +         FSH+ W+   +    
Sbjct: 27  KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGG 86

Query: 176 IAKGQGIDLSDLKADKLVMFQKKHYMKLMPV 206
           +       LSDL       +        + +
Sbjct: 87  LGHMNIALLSDLTKQISRDYGVLLEGPGLAL 117


>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
           subunit {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 227

 Score = 26.8 bits (58), Expect = 2.4
 Identities = 6/47 (12%), Positives = 11/47 (23%)

Query: 99  AGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKY 145
            G H++WA + +  + P   I                          
Sbjct: 37  VGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESL 83


>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
           [TaxId: 1377]}
          Length = 229

 Score = 26.8 bits (58), Expect = 2.4
 Identities = 5/75 (6%), Positives = 14/75 (18%), Gaps = 4/75 (5%)

Query: 99  AGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNHVYEWARDHRVHHKYSETNADPHNAKRG 158
            G     + R                +  F              + Y +           
Sbjct: 26  VGNSTQTSIRHLHMTPKNMWR----TSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGA 81

Query: 159 FFFSHVGWLMCRKHP 173
           F  ++   +   ++ 
Sbjct: 82  FSMTYPDVVTNVRYN 96


>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium
           tepidum [TaxId: 1097]}
          Length = 228

 Score = 25.9 bits (55), Expect = 5.7
 Identities = 25/161 (15%), Positives = 46/161 (28%)

Query: 12  VLFEGDSTHTDTMGPIHQQASEDLAEACAKETPEKEYRIVPVWRNIVLFAYLHLAALYGA 71
           VLF+ D T         +  ++ L E    E     +         +++  L    L  A
Sbjct: 5   VLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERA 64

Query: 72  YLIFTSAKLQTTIFAILMYQAGATGITAGAHRLWAHRAYKAKTPLKLILLLFNTLAFQNH 131
            +     K + T  A+   +A    IT          A  +++ + L LL  N  A   H
Sbjct: 65  EIADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRH 124

Query: 132 VYEWARDHRVHHKYSETNADPHNAKRGFFFSHVGWLMCRKH 172
             +           +  +      +           M   +
Sbjct: 125 KLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGAN 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,039,579
Number of extensions: 46259
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 20
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)