BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1109
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus
cuniculus GN=COX6A1 PE=3 SV=1
Length = 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 3 SRLGQMMMR-KFSTSPAMKSSA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE 60
SR+ Q++ R + M S A G + ++W+ LTYF ALP + + VYL+ EE
Sbjct: 7 SRVSQLLGRSRLQVGRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEE- 65
Query: 61 HHVRPEFVKREYLYIRNR 78
H RPEF+ +L IR++
Sbjct: 66 -HERPEFIAYPHLRIRSK 82
>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus
norvegicus GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 2 ASRLGQMMMRKFS--TSPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
ASR+ ++ R P + G + ++W+ LTYF ALP + + V+L+ + EE
Sbjct: 8 ASRVSGLLGRALPRVGRPMSSGAHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSRHEE 67
Query: 60 EHHVRPEFVKREYLYIRNR 78
H RPEFV +L IR +
Sbjct: 68 --HERPEFVAYPHLRIRTK 84
>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus
GN=COX6A1 PE=1 SV=3
Length = 109
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 5 LGQMMMRKFSTSPAMKSSA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHH 62
G + + S M S A G + ++W+ LTYF ALP + + V+L+ H EEE
Sbjct: 10 FGLLGRSRLQLSRCMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEE-- 67
Query: 63 VRPEFVKREYLYIRNR 78
RPEFV +L IR++
Sbjct: 68 -RPEFVAYPHLRIRSK 82
>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens
GN=COX6A1 PE=1 SV=4
Length = 109
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 17 PAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHHVRPEFVKREYLYI 75
P + G + ++W+ LT+F ALP A+ + VYL+ H E E RPEF+ +L I
Sbjct: 23 PMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGEHE---RPEFIAYPHLRI 79
Query: 76 RNR 78
R +
Sbjct: 80 RTK 82
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus
GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 2 ASRLGQMMMRKFST--SPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
ASR+ + + R P + G + ++W+ LTYF ALP + + V+L+ + EE
Sbjct: 8 ASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEE 67
Query: 60 EHHVRPEFVKREYLYIRNR 78
H RP FV +L IR +
Sbjct: 68 --HERPPFVAYPHLRIRTK 84
>sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial
OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1
Length = 128
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 27 DAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNR 78
+A + W+ + + ++PC AL + +H+ H RPE V+ +L +RN+
Sbjct: 46 NASETWKKIFFIASIPCLALTMYAAFKDHKKHMSHE-RPEHVEYAFLNVRNK 96
>sp|P10817|CX6A2_RAT Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment)
OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3
Length = 94
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 STSPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
S + A K G A WR LT+ ALP AL + ++ HH RPEF+ +L
Sbjct: 8 SMASASKGDHGGAGA-NTWRLLTFVLALPSVALCSLNCWMH----AGHHERPEFIPYHHL 62
Query: 74 YIRNR 78
IR +
Sbjct: 63 RIRTK 67
>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus
GN=Cox6a2 PE=1 SV=2
Length = 97
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 STSPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
S + A K G A WR LT+ ALP AL + ++ HH RPEF+ +L
Sbjct: 11 SMASAAKGDHGGAGA-NTWRLLTFVLALPGVALCSLNCWMH----AGHHERPEFIPYHHL 65
Query: 74 YIRNR 78
IR +
Sbjct: 66 RIRTK 70
>sp|O13082|COX6A_CYPCA Cytochrome c oxidase subunit 6A, mitochondrial OS=Cyprinus carpio
PE=3 SV=1
Length = 102
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 18 AMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
A S + + W+ L++ ALP + Y++ QA H PEFV +L IR
Sbjct: 15 AAASQGSHEGGARTWKILSFVLALPGVGVCMANAYMKMQAHS--HDPPEFVPYPHLRIRT 72
Query: 78 R 78
+
Sbjct: 73 K 73
>sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens
GN=COX6A2 PE=2 SV=2
Length = 97
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNR 78
+ WR LT+ ALP AL YL H RPEF ++L IR +
Sbjct: 26 RTWRLLTFVLALPSVALCTFNSYL----HSGHRPRPEFRPYQHLRIRTK 70
>sp|Q5RC38|CX6A2_PONAB Cytochrome c oxidase subunit 6A2, mitochondrial OS=Pongo abelii
GN=COX6A2 PE=3 SV=1
Length = 97
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNR 78
+ WR LT+ ALP AL YL H RPEF ++L IR +
Sbjct: 26 RTWRLLTFVLALPSVALCTFNSYL----HSGHRPRPEFRPYQHLRIRTK 70
>sp|P07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Bos taurus
GN=COX6A2 PE=1 SV=2
Length = 97
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 18 AMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
A K G A + WR LT+ ALP AL + +L H E RP F+ +L IR
Sbjct: 15 AAKGDHGGTGA-RTWRFLTFGLALPSVALCTLNSWL-HSGHRE---RPAFIPYHHLRIRT 69
Query: 78 R 78
+
Sbjct: 70 K 70
>sp|Q9T070|COX6A_ARATH Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis
thaliana GN=COX6A PE=2 SV=1
Length = 102
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 3 SRLGQMMMRKFSTSPA--MKSSAGNPDAVKL--WRNLTYFGALPCCALVGVYVYLEHQAE 58
SR K S +P SSAG+ DA + W +TY G C AL VYV
Sbjct: 11 SRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALA-VYVL-----S 64
Query: 59 EEHHVRPEFVKREYLYIRNR 78
+ HH + +++IRN+
Sbjct: 65 KGHHHGEDPPAYPHMHIRNK 84
>sp|B9DW73|MUTS_STRU0 DNA mismatch repair protein MutS OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=mutS PE=3 SV=1
Length = 847
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 45 ALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
A V V L + AE+ H+VRPEF ++ + I+N
Sbjct: 537 ATVDVLQGLAYVAEKNHYVRPEFASQKVITIQN 569
>sp|P32799|COX13_YEAST Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX13 PE=1
SV=1
Length = 129
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 6 GQMMMRKFSTSPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYL---EHQAEEEH- 61
++ +KF S M + D +W ++ + ALP AL V Y EH EH
Sbjct: 26 DKVAAQKFKES-LMATEKHAKDTSNMWVKISVWVALPAIALTAVNTYFVEKEHAEHREHL 84
Query: 62 -HVRPEFVKREYLYIRNRN 79
HV R+Y ++ R+
Sbjct: 85 KHVPDSEWPRDYEFMNIRS 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,219,372
Number of Sequences: 539616
Number of extensions: 945523
Number of successful extensions: 2746
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2734
Number of HSP's gapped (non-prelim): 15
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)