Query psy1109
Match_columns 79
No_of_seqs 102 out of 217
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:41:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00925 Cyt_c_Oxidase_VIa Cyto 99.9 9.2E-27 2E-31 150.1 4.7 56 23-79 7-62 (86)
2 PF02046 COX6A: Cytochrome c o 99.9 2.5E-26 5.3E-31 154.5 4.0 75 5-79 9-96 (116)
3 KOG3469|consensus 99.9 2.7E-23 5.8E-28 139.5 1.7 78 1-79 3-86 (112)
4 PLN02595 cytochrome c oxidase 99.8 2.9E-19 6.3E-24 118.3 6.3 46 27-79 39-85 (102)
5 PF13124 DUF3963: Protein of u 60.9 12 0.00027 20.9 2.6 22 29-50 16-38 (40)
6 PF02939 UcrQ: UcrQ family; I 38.4 86 0.0019 19.7 4.2 33 26-58 32-67 (80)
7 PF11119 DUF2633: Protein of u 31.5 89 0.0019 18.9 3.3 24 35-58 16-39 (59)
8 PF01456 Mucin: Mucin-like gly 28.7 54 0.0012 21.5 2.2 15 39-53 126-140 (143)
9 TIGR02230 ATPase_gene1 F0F1-AT 27.9 69 0.0015 21.0 2.6 27 27-53 34-66 (100)
10 PF08139 LPAM_1: Prokaryotic m 27.1 71 0.0015 16.2 2.0 12 28-39 3-14 (25)
11 KOG0527|consensus 26.2 94 0.002 24.4 3.5 64 4-79 72-139 (331)
12 PF09163 Form-deh_trans: Forma 24.5 1.5E+02 0.0032 16.8 3.4 26 28-53 4-29 (44)
13 PRK14125 cell division suppres 23.5 1.3E+02 0.0028 19.5 3.2 18 30-49 3-20 (103)
14 TIGR00997 ispZ intracellular s 23.2 1.4E+02 0.003 21.3 3.6 28 28-55 112-139 (178)
15 COG0811 TolQ Biopolymer transp 22.5 1E+02 0.0022 22.1 2.9 23 33-57 170-192 (216)
16 KOG0721|consensus 22.3 1.4E+02 0.003 22.6 3.6 42 28-75 66-107 (230)
17 KOG1419|consensus 21.4 93 0.002 26.7 2.7 40 32-71 231-271 (654)
18 PF04279 IspA: Intracellular s 21.2 1.6E+02 0.0036 20.6 3.6 27 29-55 113-139 (176)
19 PF08114 PMP1_2: ATPase proteo 21.1 1.7E+02 0.0037 16.7 3.0 21 38-58 16-36 (43)
20 PRK00259 intracellular septati 20.1 1.6E+02 0.0034 20.9 3.4 25 31-55 115-139 (179)
No 1
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=99.93 E-value=9.2e-27 Score=150.11 Aligned_cols=56 Identities=39% Similarity=0.733 Sum_probs=52.1
Q ss_pred CCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccccCC
Q psy1109 23 AGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRN 79 (79)
Q Consensus 23 ~~~~~~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IRtKp 79 (79)
.|+++++++||+|||+||+|+|+||++|+|++++||++ +++|||++|+||||||||
T Consensus 7 ~h~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~IR~K~ 62 (86)
T cd00925 7 EHAAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEE-HERPEFVEYEHLNIRTKP 62 (86)
T ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCccceeecCC
Confidence 56678999999999999999999999999999999865 679999999999999996
No 2
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=99.92 E-value=2.5e-26 Score=154.50 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcccccccc---------CCChhhhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhc--c--CCCCCCCCC
Q psy1109 5 LGQMMMRKFSTSPAMKSS---------AGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEH--H--VRPEFVKRE 71 (79)
Q Consensus 5 ~~~~~~~~~~~s~~r~~~---------~~~~~~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~h--h--~~Pefv~Y~ 71 (79)
.++.++|++++++++... .|+++++++||+||+|||+|+|++|++|+|.++.+|++| | ++|||++||
T Consensus 9 ~~~~~~R~~s~~~~~~~~f~~~~~a~~~ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~ 88 (116)
T PF02046_consen 9 ARRAARRFFSTSAARASAFLAERSASEEHAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYP 88 (116)
T ss_dssp -----------------------TSSSSTSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------T
T ss_pred ccccccccccccccccccccchhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCc
Confidence 345666777776555211 455789999999999999999999999999999888765 2 688999999
Q ss_pred ccccccCC
Q psy1109 72 YLYIRNRN 79 (79)
Q Consensus 72 yl~IRtKp 79 (79)
|||||+||
T Consensus 89 yl~iR~K~ 96 (116)
T PF02046_consen 89 YLRIRTKP 96 (116)
T ss_dssp TSS--SS-
T ss_pred cceecCCC
Confidence 99999996
No 3
>KOG3469|consensus
Probab=99.87 E-value=2.7e-23 Score=139.49 Aligned_cols=78 Identities=33% Similarity=0.557 Sum_probs=67.9
Q ss_pred ChhHHHHHHHHHhhcccccccc----CC--ChhhhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccc
Q psy1109 1 MASRLGQMMMRKFSTSPAMKSS----AG--NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLY 74 (79)
Q Consensus 1 ma~~~~~~~~~~~~~s~~r~~~----~~--~~~~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~ 74 (79)
|++.+.+++.|+++.++.|.++ +. .++.+++|++||||+|+|+++||++|+|..+++|.+ |++||+++|+|||
T Consensus 3 l~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~~s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e-~~~~e~~~Y~fl~ 81 (112)
T KOG3469|consen 3 LAVPLTRSVTRRLGLKSARHMYRRAAVAGFKEGGSRTWKKITFFVALPAVALAMYNAYLGHGHHPE-HERPEFRAYEFLN 81 (112)
T ss_pred cchhhcccccccccccccccccchhhhhhhcchhhhhhhheeeeeeccHHHHHHHHHHHhhccCcc-cCCccccccchhh
Confidence 5667778888899988888766 22 255579999999999999999999999999998876 8899999999999
Q ss_pred cccCC
Q psy1109 75 IRNRN 79 (79)
Q Consensus 75 IRtKp 79 (79)
||+||
T Consensus 82 iR~K~ 86 (112)
T KOG3469|consen 82 IRNKP 86 (112)
T ss_pred hhcCC
Confidence 99997
No 4
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=99.78 E-value=2.9e-19 Score=118.33 Aligned_cols=46 Identities=26% Similarity=0.487 Sum_probs=36.8
Q ss_pred hhhhhHHHHHHHhHHHHHHHHH-HHHHHHhhhhhhccCCCCCCCCCccccccCC
Q psy1109 27 DAVKLWRNLTYFGALPCCALVG-VYVYLEHQAEEEHHVRPEFVKREYLYIRNRN 79 (79)
Q Consensus 27 ~~~~~WkkiS~~valP~i~l~~-~n~y~~~~eH~~hh~~Pefv~Y~yl~IRtKp 79 (79)
+++++||+||||++ ++|+ +|+|++++||++ +++| ++||||||||||
T Consensus 39 ~~a~~WkklS~~~v----~~c~~lnaY~l~~eH~~-~e~p--~~Y~yLrIRtK~ 85 (102)
T PLN02595 39 YEAAKWEKITYLGI----ASCTALAVYVLSKGHHH-GEDP--PAYPYMHIRNKE 85 (102)
T ss_pred hhhhhhhhhhHHHh----HHHHHHHHHHhhhcccc-CCCC--CCCCcceeecCC
Confidence 68999999999974 4444 599999988754 3333 499999999997
No 5
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=60.89 E-value=12 Score=20.93 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=16.9
Q ss_pred hhhH-HHHHHHhHHHHHHHHHHH
Q psy1109 29 VKLW-RNLTYFGALPCCALVGVY 50 (79)
Q Consensus 29 ~~~W-kkiS~~valP~i~l~~~n 50 (79)
..+| |+||++.|+-.+++.+++
T Consensus 16 iqkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 16 IQKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 899999998888877665
No 6
>PF02939 UcrQ: UcrQ family; InterPro: IPR004205 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multi-enzyme complex [], which recognises a mitochondrial targeting presequence. The bc1 complex contains 11 subunits: 3 respiratory subunits (cytochrome b, cytochrome c1 and Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 9.5 kDa subunit of the complex. This subunit together with cytochrome B binds to ubiquinone.; GO: 0008121 ubiquinol-cytochrome-c reductase activity; PDB: 1L0N_G 1SQQ_G 1PP9_G 1PPJ_T 2FYU_G 2BCC_G 1BCC_G 2A06_G 1NTZ_G 2YBB_g ....
Probab=38.36 E-value=86 Score=19.70 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.0
Q ss_pred hhhhhhHHHHH---HHhHHHHHHHHHHHHHHHhhhh
Q psy1109 26 PDAVKLWRNLT---YFGALPCCALVGVYVYLEHQAE 58 (79)
Q Consensus 26 ~~~~~~WkkiS---~~valP~i~l~~~n~y~~~~eH 58 (79)
.+--+.||++. ++|++|.|+.-.+..+..+..|
T Consensus 32 ~~i~N~~RR~~~q~~~v~ppfi~~y~i~~Wa~~~~~ 67 (80)
T PF02939_consen 32 KGIFNTFRRFRSQVLYVAPPFIVGYLIYDWANEENE 67 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 55667777764 6788998887666666665544
No 7
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=31.53 E-value=89 Score=18.93 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhh
Q psy1109 35 LTYFGALPCCALVGVYVYLEHQAE 58 (79)
Q Consensus 35 iS~~valP~i~l~~~n~y~~~~eH 58 (79)
|||.+-+--++..++|++..|++-
T Consensus 16 ISfiIlfgRl~Y~~I~a~~hHq~k 39 (59)
T PF11119_consen 16 ISFIILFGRLIYSAIGAWVHHQDK 39 (59)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555554444677778888887765
No 8
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=28.71 E-value=54 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy1109 39 GALPCCALVGVYVYL 53 (79)
Q Consensus 39 valP~i~l~~~n~y~ 53 (79)
||-|.++.....+|-
T Consensus 126 v~apl~la~salayt 140 (143)
T PF01456_consen 126 VCAPLLLAVSALAYT 140 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888885
No 9
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.90 E-value=69 Score=21.03 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHH------hHHHHHHHHHHHHHH
Q psy1109 27 DAVKLWRNLTYF------GALPCCALVGVYVYL 53 (79)
Q Consensus 27 ~~~~~WkkiS~~------valP~i~l~~~n~y~ 53 (79)
+....|+.+.++ +++|.++-..+..|+
T Consensus 34 ~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WL 66 (100)
T TIGR02230 34 ATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWL 66 (100)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666544 455555544445554
No 10
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=27.06 E-value=71 Score=16.16 Aligned_cols=12 Identities=0% Similarity=0.188 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHh
Q psy1109 28 AVKLWRNLTYFG 39 (79)
Q Consensus 28 ~~~~WkkiS~~v 39 (79)
+...||||.+..
T Consensus 3 ~~~mmKkil~~l 14 (25)
T PF08139_consen 3 SLSMMKKILFPL 14 (25)
T ss_pred hHHHHHHHHHHH
Confidence 457899998765
No 11
>KOG0527|consensus
Probab=26.25 E-value=94 Score=24.36 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhccccccccCCChhh----hhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCccccccCC
Q psy1109 4 RLGQMMMRKFSTSPAMKSSAGNPDA----VKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRN 79 (79)
Q Consensus 4 ~~~~~~~~~~~~s~~r~~~~~~~~~----~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~IRtKp 79 (79)
|-.+.-||++....+.. |..+- -+.||+++----.|-|-- +-.+-..|- -|+++|-|.=.|+|+
T Consensus 72 VWSq~~RRkma~qnP~m---HNSEISK~LG~~WK~Lse~EKrPFi~E----AeRLR~~Hm-----kehPdYKYRPRRKkk 139 (331)
T KOG0527|consen 72 VWSQGQRRKLAKQNPKM---HNSEISKRLGAEWKLLSEEEKRPFVDE----AERLRAQHM-----KEYPDYKYRPRRKKK 139 (331)
T ss_pred hhhHHHHHHHHHhCcch---hhHHHHHHHHHHHhhcCHhhhccHHHH----HHHHHHHHH-----HhCCCcccccccccc
Confidence 34455555555444433 44333 357999999999998875 333333332 266688898777763
No 12
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=24.53 E-value=1.5e+02 Score=16.85 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy1109 28 AVKLWRNLTYFGALPCCALVGVYVYL 53 (79)
Q Consensus 28 ~~~~WkkiS~~valP~i~l~~~n~y~ 53 (79)
+..+||.+.--++.-+++.+.+-.+.
T Consensus 4 ~V~lWKg~~Kpl~~~~~~~~~~~~~~ 29 (44)
T PF09163_consen 4 SVTLWKGVLKPLGAAGMGATAAAGFF 29 (44)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45789999888877777766555554
No 13
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=23.53 E-value=1.3e+02 Score=19.51 Aligned_cols=18 Identities=6% Similarity=-0.193 Sum_probs=9.4
Q ss_pred hhHHHHHHHhHHHHHHHHHH
Q psy1109 30 KLWRNLTYFGALPCCALVGV 49 (79)
Q Consensus 30 ~~WkkiS~~valP~i~l~~~ 49 (79)
.+|+++.+ ++-.++||.+
T Consensus 3 ~~~~~~~~--~ii~~~l~~~ 20 (103)
T PRK14125 3 LKESKIHV--SIFFVLTALV 20 (103)
T ss_pred hHHHHHHH--HHHHHHHHHH
Confidence 47888443 3444444433
No 14
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=23.20 E-value=1.4e+02 Score=21.30 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHh
Q psy1109 28 AVKLWRNLTYFGALPCCALVGVYVYLEH 55 (79)
Q Consensus 28 ~~~~WkkiS~~valP~i~l~~~n~y~~~ 55 (79)
..+.|+++++.-++-.++++.+|.|.--
T Consensus 112 p~~~W~~L~~~W~~fF~~~a~lN~~va~ 139 (178)
T TIGR00997 112 TEKGWLKLNFRWAGFFIFMAVLNEYVAT 139 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999988888888889988753
No 15
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=22.47 E-value=1e+02 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhh
Q psy1109 33 RNLTYFGALPCCALVGVYVYLEHQA 57 (79)
Q Consensus 33 kkiS~~valP~i~l~~~n~y~~~~e 57 (79)
--+=++||||+++. .|.+....+
T Consensus 170 TA~GL~vAIPAvi~--yn~l~r~~~ 192 (216)
T COG0811 170 TAIGLFVAIPAVVA--YNVLRRKVE 192 (216)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45668899999985 677665433
No 16
>KOG0721|consensus
Probab=22.29 E-value=1.4e+02 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccc
Q psy1109 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYI 75 (79)
Q Consensus 28 ~~~~WkkiS~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~yl~I 75 (79)
+...|++|++.|+--.++ +-+|.+.+-. +++-.|-||+=|+|
T Consensus 66 ~~~~~~~i~lv~~W~v~~---fL~y~i~~~~---~~~~~fDPyEILGl 107 (230)
T KOG0721|consen 66 SISTKRKVFLVVGWAVIA---FLIYKIMNSR---RERQKFDPYEILGL 107 (230)
T ss_pred cchhHHHHHHHHHHHHHH---HHHHHHhhhh---HHhhcCCcHHhhCC
Confidence 445789999888655444 4455555433 23557778888776
No 17
>KOG1419|consensus
Probab=21.41 E-value=93 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHH-HHHhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCC
Q psy1109 32 WRNL-TYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKRE 71 (79)
Q Consensus 32 Wkki-S~~valP~i~l~~~n~y~~~~eH~~hh~~Pefv~Y~ 71 (79)
|.-| ++|+++-+++..+.-+|+.|+++-+....-||.-|.
T Consensus 231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyA 271 (654)
T KOG1419|consen 231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYA 271 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHH
Confidence 4444 456788888999999999999875433455776664
No 18
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=21.21 E-value=1.6e+02 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.7
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHh
Q psy1109 29 VKLWRNLTYFGALPCCALVGVYVYLEH 55 (79)
Q Consensus 29 ~~~WkkiS~~valP~i~l~~~n~y~~~ 55 (79)
..-|+++|+.-++=-+.++.+|.|..-
T Consensus 113 ~~~W~~lt~~W~~fF~~~a~lN~~va~ 139 (176)
T PF04279_consen 113 DRGWRRLTLRWALFFLFLAALNEYVAY 139 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999988888898999988754
No 19
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.06 E-value=1.7e+02 Score=16.69 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHHHHhhhh
Q psy1109 38 FGALPCCALVGVYVYLEHQAE 58 (79)
Q Consensus 38 ~valP~i~l~~~n~y~~~~eH 58 (79)
.|.+-+|++...-+|.++++.
T Consensus 16 lVglv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677788788899998875
No 20
>PRK00259 intracellular septation protein A; Reviewed
Probab=20.14 E-value=1.6e+02 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=21.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHh
Q psy1109 31 LWRNLTYFGALPCCALVGVYVYLEH 55 (79)
Q Consensus 31 ~WkkiS~~valP~i~l~~~n~y~~~ 55 (79)
.|+++|+.-|+-.++.+.+|.|..-
T Consensus 115 ~W~~lt~~W~~fF~~~a~~n~~v~~ 139 (179)
T PRK00259 115 VWRKLNLAWALFFIFCGLLNLYVAR 139 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999988888888888988754
Done!