BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11091
(408 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
[Pediculus humanus corporis]
gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
[Pediculus humanus corporis]
Length = 589
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/222 (77%), Positives = 198/222 (89%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPEKNSPRKLRGE +QVDTTNILFVASGAYNGLD LISRRKNEKYLGFG
Sbjct: 355 MLKMLEGTIVNVPEKNSPRKLRGETIQVDTTNILFVASGAYNGLDHLISRRKNEKYLGFG 414
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P+T+S RR ASLAD AN ++ SAE+DN EKDA+L+QVEARDLI+FGMIPEFVGRFP+
Sbjct: 415 VPATDSPNRRVASLADQANYNSPNSAEQDNAEKDAYLRQVEARDLIEFGMIPEFVGRFPV 474
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV FHSLN++ LVRILTEPKNA++ QYQ+LF+MDKVDLTFSPEAL+ IAR A+E+KTGAR
Sbjct: 475 LVAFHSLNEDFLVRILTEPKNAIVPQYQMLFSMDKVDLTFSPEALRGIARQAMERKTGAR 534
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME+LLLDSM+EVPGSDIL VH+ E+TV + P YIR
Sbjct: 535 GLRAIMETLLLDSMFEVPGSDILAVHVNEETVAGRSPPVYIR 576
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 60/112 (53%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ I VP +
Sbjct: 324 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE------------GTIVNVPEKNS 371
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE +Q V T+ + + Y +L R N Y+ + P T
Sbjct: 372 PRKLRGETIQ-----VDTTNILFVASGAYNGLDHLISRRKNEKYLGFGVPAT 418
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 321 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 358
>gi|345488179|ref|XP_001605256.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Nasonia vitripennis]
Length = 596
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/223 (76%), Positives = 199/223 (89%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +QVDTTNILFVASGAYNGLDRL+SRRKNEKYLGFG
Sbjct: 357 MLKMLEGTIVNVPERNSSRKLRGDTLQVDTTNILFVASGAYNGLDRLVSRRKNEKYLGFG 416
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P++ES GRRAASLAD+AN S S E+DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 417 ATPASESPGRRAASLADVANMSP--STEDDNKEKDVLLRQVEARDLIDFGMIPEFVGRFP 474
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+LN+E+LVRILTEPKNAM+ QYQ+LF+MDKV+LTF+PEAL AIA +A+E+KTGA
Sbjct: 475 VLVPFHTLNREMLVRILTEPKNAMVPQYQMLFSMDKVELTFTPEALDAIASMAMERKTGA 534
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M++VPGSD++MVH+TE V P Y+R
Sbjct: 535 RGLRAIMESLLLEPMFDVPGSDVVMVHVTEGCVRGQEKPQYVR 577
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 323 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 360
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 326 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 360
>gi|66511659|ref|XP_394615.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Apis mellifera]
Length = 586
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/223 (75%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +Q+DTTNILFVASGAYNGLDRLISRRK EKYLGFG
Sbjct: 350 MLKMLEGTIVNVPERNSSRKLRGDTLQIDTTNILFVASGAYNGLDRLISRRKTEKYLGFG 409
Query: 80 AP-STESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A S ES GRRAA+LAD+AN S S E+DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 410 ASRSLESPGRRAANLADVANMSP--STEKDNKEKDVLLQQVEARDLIDFGMIPEFVGRFP 467
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++ +LVRILTEP+NAMI QYQ+LF+MDKVDLTF+ EAL AIA LA+EKKTGA
Sbjct: 468 VLVPFHTLDKNMLVRILTEPQNAMIPQYQMLFSMDKVDLTFTSEALNAIASLAMEKKTGA 527
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSD++ VH+TE V P YIR
Sbjct: 528 RGLRAIMESLLLEPMFEVPGSDVMSVHVTEGCVRGQEKPQYIR 570
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
>gi|380017129|ref|XP_003692515.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Apis florea]
Length = 586
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/223 (75%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +Q+DTTNILFVASGAYNGLDRLISRRK EKYLGFG
Sbjct: 350 MLKMLEGTIVNVPERNSSRKLRGDTLQIDTTNILFVASGAYNGLDRLISRRKTEKYLGFG 409
Query: 80 AP-STESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A S ES GRRAA+LAD+AN S S E+DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 410 ASRSCESPGRRAANLADVANMSP--STEKDNKEKDVLLQQVEARDLIDFGMIPEFVGRFP 467
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++ +LVRILTEP+NAMI QYQ+LF+MDKVDLTF+ +AL AIA LA+EKKTGA
Sbjct: 468 VLVPFHTLDKNMLVRILTEPQNAMIPQYQMLFSMDKVDLTFTSDALNAIASLAMEKKTGA 527
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSD++ VH+TE V P YIR
Sbjct: 528 RGLRAIMESLLLEPMFEVPGSDVMSVHVTEGCVRGQEKPQYIR 570
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
>gi|307203708|gb|EFN82674.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Harpegnathos saltator]
Length = 589
Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 167/223 (74%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRGE +QVDTTNILFVASGAYNGLDRLISRRK EKYLGFG
Sbjct: 353 MLKMLEGTIVNVPERNSSRKLRGETLQVDTTNILFVASGAYNGLDRLISRRKTEKYLGFG 412
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P+ ES GRRAA+LAD+AN S S E DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 413 AKPTAESPGRRAATLADVANMSP--STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFP 470
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++LVRILTEPKNA++ Q+Q+LF+MDKV+LTF AL AIA LA+E+KTGA
Sbjct: 471 VLVPFHTLDRDMLVRILTEPKNAIVPQFQMLFSMDKVELTFDINALNAIASLAMERKTGA 530
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLLD M+EVPGSD++ VHITE V + P Y+R
Sbjct: 531 RGLRAIMESLLLDPMFEVPGSDVMSVHITEQCVKGHEKPQYVR 573
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 356
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 322 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 356
>gi|340729247|ref|XP_003402917.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Bombus terrestris]
Length = 586
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 167/223 (74%), Positives = 194/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +Q+DTTNILFVASGAYNGLDRLI RRK EKYLGFG
Sbjct: 350 MLKMLEGTIVNVPERNSSRKLRGDTLQIDTTNILFVASGAYNGLDRLILRRKTEKYLGFG 409
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A PS+ES GRRAA+LAD+AN S S E DNKEKD+ L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 410 ASPSSESPGRRAANLADVANMSP--STERDNKEKDSLLQQVEARDLIDFGMIPEFVGRFP 467
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++ +LVRILTEP+NAM+ QYQ+LF+MDKV+LTF+ EAL AIA LA+EKKTGA
Sbjct: 468 VLVPFHTLDRGMLVRILTEPQNAMVPQYQMLFSMDKVELTFTTEALNAIASLAMEKKTGA 527
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSD++ VH+TE V P YIR
Sbjct: 528 RGLRAIMESLLLEPMFEVPGSDVMSVHVTEGCVRGQEKPQYIR 570
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
>gi|350417778|ref|XP_003491590.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Bombus impatiens]
Length = 586
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +Q+DTTNILFVASGAYNGLDRLI RRK EKYLGFG
Sbjct: 350 MLKMLEGTIVNVPERNSSRKLRGDTLQIDTTNILFVASGAYNGLDRLILRRKTEKYLGFG 409
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A PS+ES GRRAA+LAD+AN S S E DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 410 ASPSSESPGRRAANLADVANMSP--STERDNKEKDLLLQQVEARDLIDFGMIPEFVGRFP 467
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++LVRILTEP+NAM+ QYQ+LF+MDKV+LTF+ EAL AIA LA+EKKTGA
Sbjct: 468 VLVPFHTLDRDMLVRILTEPQNAMVPQYQMLFSMDKVELTFTTEALNAIASLAMEKKTGA 527
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSD++ VH+TE V YIR
Sbjct: 528 RGLRAIMESLLLEPMFEVPGSDVMSVHVTEGCVRGQEKAQYIR 570
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
>gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Acromyrmex echinatior]
Length = 592
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRGEM+QVDTTNILFVASGAY+GLDRLI+RRK+EKYLGFG
Sbjct: 355 MLKMLEGTIVNVPERNSSRKLRGEMLQVDTTNILFVASGAYSGLDRLIARRKSEKYLGFG 414
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P+ ES GRRAA+LAD+AN S S E DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 415 ATPAVESPGRRAATLADVANMSP--STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFP 472
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++L RILTEPKNA+I QYQ+LF+MDKV+LTF AL AIA LA+E+KTGA
Sbjct: 473 VLVPFHTLDRDMLARILTEPKNAIIPQYQMLFSMDKVELTFDTHALNAIASLAMERKTGA 532
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSDI+ VHITE V P Y++
Sbjct: 533 RGLRAIMESLLLEPMFEVPGSDIVSVHITEQCVKGVEKPQYVK 575
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 321 AQMGIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 358
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 324 GIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 358
>gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta]
Length = 588
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRGEM+QVDTTNILFVASGAY+GLDRLI+RRK+EKYLGFG
Sbjct: 351 MLKMLEGTIVNVPERNSSRKLRGEMLQVDTTNILFVASGAYSGLDRLIARRKSEKYLGFG 410
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P+ ES GRRAA+LAD+AN S S E DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 411 ATPAAESPGRRAATLADIANMSP--STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFP 468
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++L RILTEPKNA++ QYQ+LF+MDKV+LTF AL AIA LA+E+KTGA
Sbjct: 469 VLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVHALNAIASLAMERKTGA 528
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGSDI+ VHITE V P Y++
Sbjct: 529 RGLRAIMESLLLEPMFEVPGSDIVSVHITEQCVKGAEKPQYVK 571
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 317 AQMGIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 354
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 320 GIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 354
>gi|383855538|ref|XP_003703267.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Megachile rotundata]
Length = 586
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 194/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRG+ +QVDTTNILFVASGAYNGLDRLISRRK EKYLGFG
Sbjct: 350 MLKMLEGTIVNVPERNSSRKLRGDTLQVDTTNILFVASGAYNGLDRLISRRKTEKYLGFG 409
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P ES GRRAA+LAD+AN S S E+DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 410 ATPFKESPGRRAANLADVANMSP--STEKDNKEKDLLLQQVEARDLIDFGMIPEFVGRFP 467
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++LVRILTEP+NAM+ QYQ+LF+MDKV+LTF+ +AL AIA LA+EKKTGA
Sbjct: 468 VLVPFHTLDRDMLVRILTEPQNAMVPQYQMLFSMDKVELTFTADALNAIASLAMEKKTGA 527
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIME+LLL+ M+EVPGSD++ VH+TE V P Y++
Sbjct: 528 RGLRAIMEALLLEPMFEVPGSDVMSVHVTEGCVRGQEKPQYVK 570
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 353
>gi|307180270|gb|EFN68303.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Camponotus floridanus]
Length = 593
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 193/223 (86%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NS RKLRGEM+QVDTTNILFVASGAY+GLDRLI+RRK+EKYLGFG
Sbjct: 356 MLKMLEGTIVNVPERNSSRKLRGEMLQVDTTNILFVASGAYSGLDRLIARRKSEKYLGFG 415
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P+ ES GRRAA+LAD+AN S S E DNKEKD L+QVEARDLIDFGMIPEFVGRFP
Sbjct: 416 ATPAAESPGRRAATLADVANMSP--STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFP 473
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LVPFH+L++++L RILTEPKNA++ QYQ+LF+MDKV+LTF +AL AIA LA+E+KTGA
Sbjct: 474 VLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVDALNAIASLAMERKTGA 533
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAIMESLLL+ M+EVPGS I+ VHITE V P Y+R
Sbjct: 534 RGLRAIMESLLLEPMFEVPGSGIVSVHITEQCVKGCEKPQYVR 576
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 322 AQMGIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 359
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGA+PGIHQLRDVGGEGVQQGMLK+
Sbjct: 325 GIVFLDEVDKIGAIPGIHQLRDVGGEGVQQGMLKM 359
>gi|321470999|gb|EFX81973.1| hypothetical protein DAPPUDRAFT_302881 [Daphnia pulex]
Length = 563
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%), Gaps = 3/222 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+N+PRKLRGE +QVDTTNILFVASGAY GLDR++SRRKNEKYLGFG
Sbjct: 317 MLKMLEGTIVNVPERNAPRKLRGETIQVDTTNILFVASGAYTGLDRIVSRRKNEKYLGFG 376
Query: 80 APST-ESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A S+ SAGRRAA+ A +A S+ V+ +D E+DAFL+ VEARDLIDFGMIPEFVGRFP
Sbjct: 377 ASSSGNSAGRRAATQAGMAEVSSEVA--DDESERDAFLRAVEARDLIDFGMIPEFVGRFP 434
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++VPFHSL+Q+ LVRILTEP+NA++ Q+Q+LF MDKV+LTFSPEAL+AI++ A+EKKTGA
Sbjct: 435 VIVPFHSLSQDTLVRILTEPRNALVPQFQMLFGMDKVELTFSPEALRAISKQAMEKKTGA 494
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLRAIME+LLLD+M+E+PGSDI+ VH+TED V + P +I
Sbjct: 495 RGLRAIMETLLLDAMFEIPGSDIVSVHVTEDAVNGRSQPLFI 536
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 285 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 320
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 283 AQQGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 320
>gi|427783833|gb|JAA57368.1| Putative atp-dependent clp prote [Rhipicephalus pulchellus]
Length = 611
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+V+VPE++S RKLRG+ + VDTTN+LFVASGA+NGLDR++ RR+NEKYLGF
Sbjct: 368 MLKMLEGTLVSVPERSS-RKLRGDALTVDTTNVLFVASGAFNGLDRIVGRRRNEKYLGFC 426
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
APS +S GRRAAS A LAN S SA +DN E+DA L+ VEARDLI+FGMIPEFVGRFP+
Sbjct: 427 APSLDSPGRRAASQAGLANASPYSSASDDNAERDALLRGVEARDLIEFGMIPEFVGRFPV 486
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL++++LV+ILTEP+NA++ QYQ+LF MDKV+LTF PEAL+AIA LA+E+KTGAR
Sbjct: 487 LVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFEPEALRAIAHLAMERKTGAR 546
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLRAIME++LL+ M+E+PGSD+ VHIT D + AP YIRG
Sbjct: 547 GLRAIMETILLEPMFEIPGSDVTSVHITHDCAMGKCAPLYIRG 589
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 336 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 371
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 334 AQQGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 371
>gi|427783831|gb|JAA57367.1| Putative atp-dependent clp prote [Rhipicephalus pulchellus]
Length = 611
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+V+VPE++S RKLRG+ + VDTTN+LFVASGA+NGLDR++ RR+NEKYLGF
Sbjct: 368 MLKMLEGTLVSVPERSS-RKLRGDALTVDTTNVLFVASGAFNGLDRIVGRRRNEKYLGFC 426
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
APS +S GRRAAS A LAN S SA +DN E+DA L+ VEARDLI+FGMIPEFVGRFP+
Sbjct: 427 APSLDSPGRRAASQAGLANASPYSSASDDNAERDALLRGVEARDLIEFGMIPEFVGRFPV 486
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL++++LV+ILTEP+NA++ QYQ+LF MDKV+LTF PEAL+AIA LA+E+KTGAR
Sbjct: 487 LVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFEPEALRAIAHLAMERKTGAR 546
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLRAIME++LL+ M+E+PGSD+ VHIT D + AP YIRG
Sbjct: 547 GLRAIMETILLEPMFEIPGSDVTSVHITHDCAMGKCAPLYIRG 589
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 336 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 371
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 334 AQQGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 371
>gi|427779803|gb|JAA55353.1| Putative atp-dependent clp prote [Rhipicephalus pulchellus]
Length = 645
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+V+VPE++S RKLRG+ + VDTTN+LFVASGA+NGLDR++ RR+NEKYLGF
Sbjct: 402 MLKMLEGTLVSVPERSS-RKLRGDALTVDTTNVLFVASGAFNGLDRIVGRRRNEKYLGFC 460
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
APS +S GRRAAS A LAN S SA +DN E+DA L+ VEARDLI+FGMIPEFVGRFP+
Sbjct: 461 APSLDSPGRRAASQAGLANASPYSSASDDNAERDALLRGVEARDLIEFGMIPEFVGRFPV 520
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL++++LV+ILTEP+NA++ QYQ+LF MDKV+LTF PEAL+AIA LA+E+KTGAR
Sbjct: 521 LVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFEPEALRAIAHLAMERKTGAR 580
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLRAIME++LL+ M+E+PGSD+ VHIT D + AP YIRG
Sbjct: 581 GLRAIMETILLEPMFEIPGSDVTSVHITHDCAMGKCAPLYIRG 623
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 68/77 (88%), Gaps = 7/77 (9%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIH 300
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ + LDEVDKIGAVPGIH
Sbjct: 336 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM-------LEXLDEVDKIGAVPGIH 388
Query: 301 QLRDVGGEGVQQGMLKV 317
QLRDVGGEGVQQGMLK+
Sbjct: 389 QLRDVGGEGVQQGMLKM 405
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 210 LDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGV 269
+D + VPG +H D + ++ + LDEVDKIGAVPGIHQLRDVGGEGV
Sbjct: 344 VDKIGAVPG-----IHQLRDVGGEGVQQGMLKMLEXLDEVDKIGAVPGIHQLRDVGGEGV 398
Query: 270 QQGMLKV 276
QQGMLK+
Sbjct: 399 QQGMLKM 405
>gi|427779819|gb|JAA55361.1| Putative atp-dependent clp prote [Rhipicephalus pulchellus]
Length = 657
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 191/223 (85%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+V+VPE++S RKLRG+ + VDTTN+LFVASGA+NGLDR++ RR+NEKYLGF
Sbjct: 414 MLKMLEGTLVSVPERSS-RKLRGDALTVDTTNVLFVASGAFNGLDRIVGRRRNEKYLGFC 472
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
APS +S GRRAAS A LAN S SA +DN E+DA L+ VEARDLI+FGMIPEFVGRFP+
Sbjct: 473 APSLDSPGRRAASQAGLANASPYSSASDDNAERDALLRGVEARDLIEFGMIPEFVGRFPV 532
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL++++LV+ILTEP+NA++ QYQ+LF MDKV+LTF PEAL+AIA LA+E+KTGAR
Sbjct: 533 LVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFEPEALRAIAHLAMERKTGAR 592
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLRAIME++LL+ M+E+PGSD+ VHIT D + AP YIRG
Sbjct: 593 GLRAIMETILLEPMFEIPGSDVTSVHITHDCAMGKCAPLYIRG 635
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 69/82 (84%), Gaps = 5/82 (6%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK-----VSALAAFGIVFLDEVDKIGA 295
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK + ++ LDEVDKIGA
Sbjct: 336 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTLVSVPERSSRXLDEVDKIGA 395
Query: 296 VPGIHQLRDVGGEGVQQGMLKV 317
VPGIHQLRDVGGEGVQQGMLK+
Sbjct: 396 VPGIHQLRDVGGEGVQQGMLKM 417
>gi|189234285|ref|XP_969886.2| PREDICTED: similar to ATP-dependent clp protease atp-binding
subunit clpx [Tribolium castaneum]
Length = 604
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 183/220 (83%), Gaps = 1/220 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE +QVDTTNILFVASGAYNGL+RLI RR NE YLGFG
Sbjct: 361 MLKMLEGTVVNVPERNSPRKLRGETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFG 420
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP +ES GRRA S QS+ +AEE+N EKDA LKQV+ARDLIDFGMIPEFVGRFP+
Sbjct: 421 APVSESQGRRAVSQQASLYQSSQ-TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPV 479
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSLN+ +LVRILTEPKNA++ QYQ L MD+ +L+F+P AL +IA LA+E+KTGAR
Sbjct: 480 LVPFHSLNKNMLVRILTEPKNALLPQYQRLLAMDQCELSFTPGALDSIATLAMERKTGAR 539
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GLRAIMESLLL+ M+EVPGS I VH+TE+ V + P Y
Sbjct: 540 GLRAIMESLLLEPMFEVPGSGITTVHVTEEYVRGESGPVY 579
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 327 AQIGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 364
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 330 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 364
>gi|270002375|gb|EEZ98822.1| hypothetical protein TcasGA2_TC004428 [Tribolium castaneum]
Length = 590
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 183/220 (83%), Gaps = 1/220 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE +QVDTTNILFVASGAYNGL+RLI RR NE YLGFG
Sbjct: 347 MLKMLEGTVVNVPERNSPRKLRGETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFG 406
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP +ES GRRA S QS+ +AEE+N EKDA LKQV+ARDLIDFGMIPEFVGRFP+
Sbjct: 407 APVSESQGRRAVSQQASLYQSSQ-TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPV 465
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSLN+ +LVRILTEPKNA++ QYQ L MD+ +L+F+P AL +IA LA+E+KTGAR
Sbjct: 466 LVPFHSLNKNMLVRILTEPKNALLPQYQRLLAMDQCELSFTPGALDSIATLAMERKTGAR 525
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GLRAIMESLLL+ M+EVPGS I VH+TE+ V + P Y
Sbjct: 526 GLRAIMESLLLEPMFEVPGSGITTVHVTEEYVRGESGPVY 565
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 313 AQIGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 350
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 316 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 350
>gi|332375668|gb|AEE62975.1| unknown [Dendroctonus ponderosae]
Length = 582
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/241 (63%), Positives = 188/241 (78%), Gaps = 1/241 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NSPRKLRGE +QVDTTNILFVASGAYNGL+RLI RR NE YLGFG
Sbjct: 343 MLKMLEGTIVNVPERNSPRKLRGETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFG 402
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP T GRRA + + S+ SAEE+N EKD L+QV+ARDLIDFGMIPEFVGRFP+
Sbjct: 403 APVTAGQGRRAVA-QEATLHSSTQSAEEENLEKDQALRQVQARDLIDFGMIPEFVGRFPV 461
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL+Q +LVRILTEP NA+I QYQ L MD+ L+F+ +AL AIA A+++KTGAR
Sbjct: 462 LVPFHSLDQSMLVRILTEPNNALIPQYQRLLAMDQCQLSFTSDALNAIASQAMDRKTGAR 521
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIH 259
GLRAIME+LLL+ M+EVPG+ I VH+T++ V + P+Y++ + E D+I A +
Sbjct: 522 GLRAIMETLLLEPMFEVPGAGISEVHVTDECVRGKSQPTYVKSTTEVTEEDEINATIRLK 581
Query: 260 Q 260
Q
Sbjct: 582 Q 582
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 309 AQIGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 346
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 59/113 (52%), Gaps = 21/113 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ I VP +
Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE------------GTIVNVPERNS 359
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNTG 350
R + GE +Q V T+ + + Y L R N Y+ + P T
Sbjct: 360 PRKLRGETIQ-----VDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVTA 407
>gi|157138274|ref|XP_001664208.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti]
gi|108869543|gb|EAT33768.1| AAEL013966-PA [Aedes aegypti]
Length = 633
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/222 (67%), Positives = 184/222 (82%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 384 MLKMLEGTIVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P++ S GRRAA Q++A + D E+DA L++V+A+DL++FGMIPEFVGRFP+
Sbjct: 444 MPASSSEGRRAA-------QASAAPMDNDQVERDANLRKVQAKDLVEFGMIPEFVGRFPV 496
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL+ ++LVRILTEP+NA++ QY+ L MD+V+LTF+ AL+ IA+LA+E++TGAR
Sbjct: 497 LVPFHSLDVDMLVRILTEPRNALVPQYKALLGMDQVELTFAEGALKQIAQLAMERQTGAR 556
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME+LLL+ M+EVPGSD+ VHITED V T P YIR
Sbjct: 557 GLRAIMETLLLEPMFEVPGSDVQTVHITEDCVRNQTEPVYIR 598
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 350 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 387
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 353 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 387
>gi|170044440|ref|XP_001849855.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
quinquefasciatus]
gi|167867595|gb|EDS30978.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
quinquefasciatus]
Length = 614
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/222 (66%), Positives = 184/222 (82%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 365 MLKMLEGTIVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 424
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P++ S GRRAA Q++A + D E+DA L++V+A+DL++FGMIPEFVGRFP+
Sbjct: 425 MPASSSEGRRAA-------QASASPMDNDQVERDANLRKVQAKDLVEFGMIPEFVGRFPV 477
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL+ E+LVRILTEP+NA++ QY+ L MD+V+LTF+ +AL+ IA+LA+E++TGAR
Sbjct: 478 LVPFHSLDVEMLVRILTEPRNALVPQYKALLGMDQVELTFAEDALKQIAQLAMERQTGAR 537
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME+LLL+ M+EVPGSD+ VHIT+D V P YIR
Sbjct: 538 GLRAIMETLLLEPMFEVPGSDVKTVHITDDCVRGQAEPEYIR 579
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 331 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 368
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 60/118 (50%), Gaps = 21/118 (17%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ I VP +
Sbjct: 334 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE------------GTIVNVPERNS 381
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNTGYIWYR 355
R + GE VQ V T+ + + Y L R N Y+ + P + R
Sbjct: 382 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRR 434
>gi|5353573|gb|AAD42187.1|AF134983_1 energy-dependent regulator of proteolysis [Mus musculus]
Length = 632
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 181/223 (81%), Gaps = 3/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 385 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 444 TPSNLGKGRRAA--ADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 501
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 502 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 561
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 562 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 604
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>gi|195498060|ref|XP_002096364.1| GE25106 [Drosophila yakuba]
gi|194182465|gb|EDW96076.1| GE25106 [Drosophila yakuba]
Length = 672
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 180/222 (81%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 424 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 483
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 484 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 536
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 537 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 596
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V ++ P Y R
Sbjct: 597 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSSTPEYSR 638
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 440
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 441 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 487
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 390 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 427
>gi|194899883|ref|XP_001979487.1| GG15775 [Drosophila erecta]
gi|190651190|gb|EDV48445.1| GG15775 [Drosophila erecta]
Length = 672
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 180/222 (81%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 424 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 483
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 484 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 536
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 537 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 596
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V ++ P Y R
Sbjct: 597 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSSTPEYSR 638
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 440
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 441 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 487
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 390 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 427
>gi|27374215|gb|AAO00979.1| CG4538-PA [Drosophila erecta]
Length = 672
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 180/222 (81%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 424 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 483
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 484 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 536
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 537 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 596
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V ++ P Y R
Sbjct: 597 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSSTPEYSR 638
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 440
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 441 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 487
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 390 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 427
>gi|195395804|ref|XP_002056524.1| GJ10182 [Drosophila virilis]
gi|194143233|gb|EDW59636.1| GJ10182 [Drosophila virilis]
Length = 683
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 180/222 (81%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 430 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 489
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QS A + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 490 MPSTSGSGRRAA-------QSTASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 542
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDL+F+ +A+++IA LA+E+ TGAR
Sbjct: 543 IVPFHSLNVNMLVRILTEPRNALVPQYKALLGLDEVDLSFTEDAVESIATLAMERHTGAR 602
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME+LLLD M+ VPGSDI VHIT + V NT P YIR
Sbjct: 603 GLRSIMETLLLDPMFIVPGSDIRGVHITAEYVRGNTKPVYIR 644
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 399 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 446
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 447 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 493
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 396 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 433
>gi|195450106|ref|XP_002072367.1| GK22807 [Drosophila willistoni]
gi|194168452|gb|EDW83353.1| GK22807 [Drosophila willistoni]
Length = 683
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 178/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 435 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 494
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS+ +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 495 MPSSSGSGRRAA-------QSAATPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 547
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA LA+E+ TGAR
Sbjct: 548 IVPFHSLNINMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIATLAMERHTGAR 607
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V N+ P Y R
Sbjct: 608 GLRSIMEQLLLDPMFIVPGSDIRRVHITADYVKGNSTPVYTR 649
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 401 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 438
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 404 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 438
>gi|27374353|gb|AAO01094.1| CG4538-PA [Drosophila willistoni]
Length = 675
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 178/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 427 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 486
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS+ +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 487 MPSSSGSGRRAA-------QSAATPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 539
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA LA+E+ TGAR
Sbjct: 540 IVPFHSLNINMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIATLAMERHTGAR 599
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V N+ P Y R
Sbjct: 600 GLRSIMEQLLLDPMFIVPGSDIRRVHITADYVKGNSTPVYTR 641
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 393 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 430
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 430
>gi|223648098|gb|ACN10807.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Salmo salar]
Length = 627
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 155/223 (69%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR++SRRKNEKYLGFG
Sbjct: 377 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIVSRRKNEKYLGFG 435
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + +EKD LK VEARDLI+FGMIPEFVGR P+
Sbjct: 436 TPSNMGKGRRAAAAADLANSSEQTDMVAEMEEKDRLLKLVEARDLIEFGMIPEFVGRLPV 495
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL++E LVRILTEP+NA+I QYQ LF MDK +L + EAL+AIARLALE+KTGAR
Sbjct: 496 VVPLHSLDEETLVRILTEPRNAVIPQYQALFNMDKCELNVTTEALRAIARLALERKTGAR 555
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V +T+D VL + P Y+R
Sbjct: 556 GLRSIMEKLLLEPMFEVPCSDIMAVELTKDVVLGKSEPQYVRA 598
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 345 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 380
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 343 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 380
>gi|347969014|ref|XP_563112.4| AGAP002996-PA [Anopheles gambiae str. PEST]
gi|347969016|ref|XP_003436341.1| AGAP002996-PB [Anopheles gambiae str. PEST]
gi|347969018|ref|XP_003436342.1| AGAP002996-PC [Anopheles gambiae str. PEST]
gi|347969020|ref|XP_003436343.1| AGAP002996-PD [Anopheles gambiae str. PEST]
gi|333467734|gb|EAL40794.4| AGAP002996-PA [Anopheles gambiae str. PEST]
gi|333467735|gb|EGK96670.1| AGAP002996-PB [Anopheles gambiae str. PEST]
gi|333467736|gb|EGK96671.1| AGAP002996-PC [Anopheles gambiae str. PEST]
gi|333467737|gb|EGK96672.1| AGAP002996-PD [Anopheles gambiae str. PEST]
Length = 691
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 185/222 (83%), Gaps = 8/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 441 MLKMLEGTIVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 500
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P++ S GRRAA Q++A + D E+DA LK+V+A+DL++FGMIPEFVGRFP+
Sbjct: 501 MPASSSEGRRAA-------QASASPMDNDQVERDANLKKVQAKDLVEFGMIPEFVGRFPV 553
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL+ ++LVRILTEP+NA++ QY+ L MD+V+L+F+ EAL+ IA+LA+E++TGAR
Sbjct: 554 LVPFHSLDVDMLVRILTEPRNALVPQYKALLGMDQVELSFTDEALKQIAQLAMERQTGAR 613
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME+LLL+ M+EVPGSD+ V ITE++V + P Y+R
Sbjct: 614 GLRAIMETLLLEPMFEVPGSDVKGVRITEESV-RGAEPVYVR 654
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 407 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 444
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 60/118 (50%), Gaps = 21/118 (17%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ I VP +
Sbjct: 410 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE------------GTIVNVPERNS 457
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNTGYIWYR 355
R + GE VQ V T+ + + Y L R N Y+ + P + R
Sbjct: 458 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRR 510
>gi|15292275|gb|AAK93406.1| LD45279p [Drosophila melanogaster]
Length = 478
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 179/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 230 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 289
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 290 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 343 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 403 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 444
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 199 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 246
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 247 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 293
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 196 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 233
>gi|24648289|ref|NP_650843.1| CG4538, isoform A [Drosophila melanogaster]
gi|23171758|gb|AAF55713.2| CG4538, isoform A [Drosophila melanogaster]
gi|189182138|gb|ACD81845.1| LD11650p [Drosophila melanogaster]
Length = 673
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 179/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 425 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 484
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 485 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 537
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 538 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 597
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 598 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 639
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 441
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 442 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 488
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 391 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 428
>gi|24648291|ref|NP_732463.1| CG4538, isoform B [Drosophila melanogaster]
gi|23171759|gb|AAN13814.1| CG4538, isoform B [Drosophila melanogaster]
Length = 673
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 179/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 425 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 484
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 485 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 537
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 538 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 597
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 598 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 639
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 441
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 442 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 488
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 391 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 428
>gi|195353554|ref|XP_002043269.1| GM26887 [Drosophila sechellia]
gi|194127383|gb|EDW49426.1| GM26887 [Drosophila sechellia]
Length = 673
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 179/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 425 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 484
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 485 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 537
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 538 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 597
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 598 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 639
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 441
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 442 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 488
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 391 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 428
>gi|195569578|ref|XP_002102786.1| GD20094 [Drosophila simulans]
gi|194198713|gb|EDX12289.1| GD20094 [Drosophila simulans]
Length = 673
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 179/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 425 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 484
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 485 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 537
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 538 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGAR 597
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 598 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 639
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 441
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 442 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 488
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 391 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 428
>gi|391339592|ref|XP_003744132.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Metaseiulus occidentalis]
Length = 623
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/222 (64%), Positives = 185/222 (83%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NS RKLRGE + VDTTNILF+ASGA+NGLDRL+SRRK KYLGFG
Sbjct: 383 MLKMLEGTLVNVPERNS-RKLRGESLTVDTTNILFIASGAFNGLDRLVSRRKTNKYLGFG 441
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ES GRRAA+ D AN +A SA ++N EKD LK VEARDLI+FGMIPEFVGRFP+
Sbjct: 442 APVFESRGRRAAASEDQANSAAHESAIDENIEKDIMLKSVEARDLIEFGMIPEFVGRFPV 501
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSL++++L++ILTEP+NA++ Q+Q+LF+MDK +LTF AL++IA +A+E+KTGAR
Sbjct: 502 LVPFHSLSEDMLIQILTEPQNALLPQFQMLFSMDKCELTFDDAALRSIAHMAMERKTGAR 561
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME +LL+ M+E+PGSD+ VHI+++ A +Y+R
Sbjct: 562 GLRAIMEKILLEPMFEIPGSDVTGVHISKEAAEGTAAATYVR 603
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 351 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 386
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 349 AQQGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 386
>gi|194741360|ref|XP_001953157.1| GF17351 [Drosophila ananassae]
gi|190626216|gb|EDV41740.1| GF17351 [Drosophila ananassae]
Length = 675
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 178/222 (80%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 427 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 486
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 487 MPSTSGSGRRAA-------QSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 539
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D VDLTF+ +A+++IA+LA+E+ TGAR
Sbjct: 540 IVPFHSLNISMLVRILTEPRNALVPQYKALLGLDDVDLTFTDDAVKSIAQLAMERHTGAR 599
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V + P Y R
Sbjct: 600 GLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGGSTPVYNR 641
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 443
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 444 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 490
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 393 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 430
>gi|326926841|ref|XP_003209605.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Meleagris gallopavo]
Length = 609
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 360 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 418
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + ED +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 419 TPSNMGKGRRAAAAADLANISGESNTHEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 478
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 479 VVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 538
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 539 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 581
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 363
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 328 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 363
>gi|71895647|ref|NP_001025723.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Gallus gallus]
gi|53128038|emb|CAG31266.1| hypothetical protein RCJMB04_4h24 [Gallus gallus]
Length = 630
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 381 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 439
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + ED +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 440 TPSNMGKGRRAAAAADLANISGEPNTHEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 499
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 500 VVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 559
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 560 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 602
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 347 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
>gi|195112088|ref|XP_002000608.1| GI10327 [Drosophila mojavensis]
gi|193917202|gb|EDW16069.1| GI10327 [Drosophila mojavensis]
Length = 672
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 177/220 (80%), Gaps = 7/220 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 418 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 477
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QS A + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 478 MPSTSGSGRRAA-------QSTASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 530
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDL+F+ +A+++IA LA+E+ TGAR
Sbjct: 531 IVPFHSLNVNMLVRILTEPRNALVPQYKALLGLDEVDLSFTEDAVESIASLAMERHTGAR 590
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GLR+IME LLLD M+ VPGSDI VHIT D V N+ P Y
Sbjct: 591 GLRSIMEQLLLDPMFIVPGSDIRSVHITADYVRGNSKPIY 630
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 387 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 434
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 435 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 481
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 384 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 421
>gi|72028078|ref|XP_797563.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Strongylocentrotus
purpuratus]
Length = 615
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 145/222 (65%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPE++S RKLRGE V VDTTNILFVASGA+NGLDR+ISRRK +KYLGFG
Sbjct: 376 LLKLLEGTVVNVPERSS-RKLRGESVPVDTTNILFVASGAFNGLDRIISRRKQQKYLGFG 434
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP+ ES GRRAAS+AD NQS SA+EDN+EKDA L+ VE+RD+I+FGMIPEFVGRFPI
Sbjct: 435 APANESQGRRAASIADQTNQSEGSSAKEDNEEKDAMLRLVESRDMIEFGMIPEFVGRFPI 494
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SL++E+L RILTEP+NA+I Q++ LF MD LT + +AL+A+A+LALE+KTGAR
Sbjct: 495 FVSLGSLDEEMLQRILTEPRNAIIPQFEALFKMDSCQLTITDDALKAVAQLALERKTGAR 554
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME +LL+SM+E+PGSDI V + + V P +I+
Sbjct: 555 GLRSIMEIILLESMFEIPGSDIEEVIVDAEVVQGRKQPEFIQ 596
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 7/59 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GE ++ + K+ A A F GI+FLDEVDKIGAVPGIHQLRDVGGEGVQQG+LK+
Sbjct: 321 GEDIESVIAKLLADANFNVEKAQQGIIFLDEVDKIGAVPGIHQLRDVGGEGVQQGLLKL 379
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+FLDEVDKIGAVPGIHQLRDVGGEGVQQG+LK+
Sbjct: 344 QGIIFLDEVDKIGAVPGIHQLRDVGGEGVQQGLLKL 379
>gi|224062774|ref|XP_002200002.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Taeniopygia guttata]
Length = 630
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 381 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 439
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S +ED +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 440 TPSNMGKGRRAAAAADLANISGESDPQEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 499
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 500 VVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 559
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 560 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 602
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 347 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
>gi|417403509|gb|JAA48555.1| Putative atp-dependent clp protease atp-binding subunit clpx-like
mitochondrial [Desmodus rotundus]
Length = 633
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANLSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVRILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|195054491|ref|XP_001994158.1| GH23301 [Drosophila grimshawi]
gi|193896028|gb|EDV94894.1| GH23301 [Drosophila grimshawi]
Length = 675
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 176/222 (79%), Gaps = 7/222 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 423 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 482
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QSAA E D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 483 MPSTSGSGRRAA-------QSAAAPMENDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 535
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+V+L+F+ +A+++IA LA+E+ TGAR
Sbjct: 536 IVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVELSFTEDAVESIAALAMERHTGAR 595
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLLD M+ VPGSDI VHIT D V P Y R
Sbjct: 596 GLRSIMEQLLLDPMFIVPGSDIRSVHITGDYVRGTDQPVYSR 637
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 392 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 439
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 440 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPST 486
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 389 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 426
>gi|344293406|ref|XP_003418414.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Loxodonta africana]
Length = 633
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 183/223 (82%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P+YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPAYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|296213478|ref|XP_002753288.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Callithrix jacchus]
Length = 633
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|158258064|dbj|BAF85005.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|27374282|gb|AAO01037.1| CG4538-PA [Drosophila virilis]
Length = 689
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/224 (65%), Positives = 180/224 (80%), Gaps = 9/224 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 434 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 493
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PST +GRRAA QS A + D +E+D L +V+ARDL++FGMIPEFVGRFP+
Sbjct: 494 MPSTSGSGRRAA-------QSTASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPV 546
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSLN +LVRILTEP+NA++ QY+ L +D+VDL+F+ +A+++IA LA+E+ TGAR
Sbjct: 547 IVPFHSLNVNMLVRILTEPRNALVPQYKALLGLDEVDLSFTEDAVESIATLAMERHTGAR 606
Query: 200 GLRAIM--ESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IM E+LLLD M+ VPGSDI VHIT + V NT P YIR
Sbjct: 607 GLRSIMLQETLLLDPMFIVPGSDIRGVHITAEYVRGNTKPVYIR 650
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 61/112 (54%), Gaps = 21/112 (18%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQ 301
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+ G V VP +
Sbjct: 403 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLE----GTVV--------NVPERNS 450
Query: 302 LRDVGGEGVQQGMLKVSTSYLFY----RYPNTGYLWYRYPNTGYIWYRYPNT 349
R + GE VQ V T+ + + Y L R N Y+ + P+T
Sbjct: 451 PRKLRGETVQ-----VDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPST 497
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 400 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 437
>gi|351695560|gb|EHA98478.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Heterocephalus glaber]
Length = 633
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|7242140|ref|NP_006651.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Homo sapiens]
gi|14916956|sp|O76031.2|CLPX_HUMAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial; Flags: Precursor
gi|7161189|emb|CAA06933.2| ClpX-like protein [Homo sapiens]
gi|9665218|emb|CAC01291.1| ClpX protein [Homo sapiens]
gi|119598121|gb|EAW77715.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
[Homo sapiens]
gi|119598122|gb|EAW77716.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
[Homo sapiens]
gi|120660350|gb|AAI30374.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
gi|223460850|gb|AAI36488.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
Length = 633
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|426379433|ref|XP_004056402.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial, partial [Gorilla gorilla
gorilla]
Length = 563
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/222 (68%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 343 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 401
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 402 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 461
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 462 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 521
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 522 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIR 563
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 311 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 346
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 309 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 346
>gi|403300421|ref|XP_003940938.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Saimiri boliviensis
boliviensis]
Length = 633
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|432092235|gb|ELK24859.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Myotis davidii]
Length = 612
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/222 (68%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 392 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 450
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 451 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 510
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 511 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 570
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 571 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIR 612
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 358 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 395
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 360 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 395
>gi|355679771|gb|AER96411.1| ClpX caseinolytic peptidase X-like protein [Mustela putorius furo]
Length = 632
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|75070594|sp|Q5R7N3.1|CLPX_PONAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial; Flags: Precursor
gi|55731022|emb|CAH92227.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|350578964|ref|XP_003121766.3| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Sus scrofa]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|297696878|ref|XP_002825604.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Pongo abelii]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|397515552|ref|XP_003828013.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Pan paniscus]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|386781029|ref|NP_001247816.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Macaca mulatta]
gi|380808998|gb|AFE76374.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Macaca mulatta]
gi|383415345|gb|AFH30886.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Macaca mulatta]
gi|384943418|gb|AFI35314.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Macaca mulatta]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|74000522|ref|XP_852508.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial isoform 1 [Canis lupus
familiaris]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|114657641|ref|XP_001174382.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial isoform 4 [Pan troglodytes]
gi|410209398|gb|JAA01918.1| ClpX caseinolytic peptidase X homolog [Pan troglodytes]
gi|410338213|gb|JAA38053.1| ClpX caseinolytic peptidase X homolog [Pan troglodytes]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|402874593|ref|XP_003901117.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Papio anubis]
Length = 633
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|426233845|ref|XP_004010921.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Ovis aries]
Length = 658
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 409 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 467
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 468 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 527
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 528 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 587
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 588 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 630
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 375 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 412
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 377 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 412
>gi|328707305|ref|XP_003243358.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 2 [Acyrthosiphon
pisum]
gi|328707307|ref|XP_001949996.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 1 [Acyrthosiphon
pisum]
Length = 556
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/225 (65%), Positives = 182/225 (80%), Gaps = 3/225 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPEKN+ RKLR E VQVDTTNILFVASGA+ GLDRLISRR N+ LGFG
Sbjct: 316 MLKMLEGTVVNVPEKNT-RKLRNETVQVDTTNILFVASGAFTGLDRLISRRTNQNSLGFG 374
Query: 80 AP-STESAGRRAASLAD-LANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
A + E RAA+ AD +A+ ++ E++N E+D LK+VE RDLI FGMIPEFVGRF
Sbjct: 375 AEINNEMGSSRAAAEADRVASTTSYTDIEKENAERDGLLKKVEPRDLIQFGMIPEFVGRF 434
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P+LVPFHSLN+ LLVRILTEPKN+ ++Q+++LF +DKV+LTF+ EAL+AIA ALEKKTG
Sbjct: 435 PVLVPFHSLNRNLLVRILTEPKNSTVKQFKLLFGLDKVELTFTDEALRAIASQALEKKTG 494
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
ARGLRAI+ES+LLD M+E+PGSD++ VH+TED V P IRG
Sbjct: 495 ARGLRAIVESILLDPMFEIPGSDVVSVHVTEDAVNGKMNPHCIRG 539
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GI+FLDE+DKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 282 AQTGIIFLDEIDKIGAVPGIHQLRDVGGEGVQQGMLKM 319
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GI+FLDE+DKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 285 GIIFLDEIDKIGAVPGIHQLRDVGGEGVQQGMLKM 319
>gi|149691862|ref|XP_001498252.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial isoform 1 [Equus caballus]
Length = 633
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|449266264|gb|EMC77339.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial, partial [Columba livia]
Length = 607
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 358 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 416
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P+ GRRAA+ ADLAN S + ED +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 417 TPANMGKGRRAAAAADLANISGESNPHEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 476
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 477 VVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 536
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 537 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 579
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 324 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
>gi|56119122|ref|NP_001007804.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial precursor [Rattus norvegicus]
gi|81910247|sp|Q5U2U0.1|CLPX_RAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial; Flags: Precursor
gi|55250758|gb|AAH85867.1| ClpX caseinolytic peptidase X homolog (E. coli) [Rattus norvegicus]
gi|149041979|gb|EDL95820.1| caseinolytic peptidase X (E.coli) [Rattus norvegicus]
Length = 633
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|301756913|ref|XP_002914296.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Ailuropoda melanoleuca]
Length = 633
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|410961018|ref|XP_003987083.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Felis catus]
Length = 633
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|410258956|gb|JAA17444.1| ClpX caseinolytic peptidase X homolog [Pan troglodytes]
Length = 633
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|332235701|ref|XP_003267043.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Nomascus leucogenys]
Length = 580
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 331 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 389
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 390 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 449
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 450 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 509
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 510 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 552
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 297 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 334
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 299 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 334
>gi|113205069|ref|NP_001037854.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial isoform 2 [Mus musculus]
gi|38174645|gb|AAH61153.1| Caseinolytic peptidase X (E.coli) [Mus musculus]
Length = 620
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 371 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 429
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 430 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 489
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 490 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 549
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 550 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 592
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 339 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 374
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 337 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 374
>gi|440902563|gb|ELR53343.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial, partial [Bos grunniens mutus]
Length = 607
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 358 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 416
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 417 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 476
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 477 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 536
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 537 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 579
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 324 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
>gi|148694140|gb|EDL26087.1| caseinolytic peptidase X (E.coli) [Mus musculus]
Length = 634
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 385 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 444 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 503
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 504 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 563
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 564 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 606
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>gi|113205071|ref|NP_035932.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial isoform 1 [Mus musculus]
gi|341940361|sp|Q9JHS4.2|CLPX_MOUSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial; Flags: Precursor
Length = 634
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 385 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 444 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 503
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 504 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 563
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 564 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 606
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>gi|9663733|emb|CAC01232.1| ClpX protein [Mus musculus]
Length = 634
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 385 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ DLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 444 TPSNLGKGRRAAAARDLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 503
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 504 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 563
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 564 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 606
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>gi|431895906|gb|ELK05324.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Pteropus alecto]
Length = 614
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 365 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 423
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 424 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 483
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 484 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 543
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 544 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 586
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 331 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 368
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 333 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 368
>gi|348512743|ref|XP_003443902.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Oreochromis niloticus]
Length = 624
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/222 (67%), Positives = 180/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 375 LLKLLEGTVVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 433
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + +EKD LK VEARDLI+FGMIPEFVGR P+
Sbjct: 434 TPSNLGKGRRAAAAADLANTSGETDTVAEIEEKDRLLKHVEARDLIEFGMIPEFVGRLPV 493
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK DL + +AL+AIAR+ALE+KTGAR
Sbjct: 494 IVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCDLNVTQDALRAIARMALERKTGAR 553
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + +D V + P Y+R
Sbjct: 554 GLRSIMEKLLLEPMFEVPHSDIMAVELDKDVVQGKSQPRYVR 595
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 341 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 343 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
>gi|297478977|ref|XP_002690567.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Bos taurus]
gi|358413939|ref|XP_001788707.3| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Bos taurus]
gi|296483742|tpg|DAA25857.1| TPA: ClpX caseinolytic protease X homolog [Bos taurus]
Length = 613
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 364 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 422
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 423 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 482
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 483 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 542
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 543 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 585
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 332 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 367
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 330 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 367
>gi|354490091|ref|XP_003507193.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 1 [Cricetulus
griseus]
Length = 633
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTVVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIA+LALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAIIPQYQALFSMDKCELNVTEDALKAIAKLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 605
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|354490093|ref|XP_003507194.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 2 [Cricetulus
griseus]
Length = 619
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 370 LLKLLEGTVVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 428
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 429 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 488
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIA+LALE+KTGAR
Sbjct: 489 VVPLHSLDEKTLVQILTEPRNAIIPQYQALFSMDKCELNVTEDALKAIAKLALERKTGAR 548
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 549 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 591
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 336 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 338 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
>gi|344254876|gb|EGW10980.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Cricetulus griseus]
Length = 607
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 358 LLKLLEGTVVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 416
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 417 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 476
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIA+LALE+KTGAR
Sbjct: 477 VVPLHSLDEKTLVQILTEPRNAIIPQYQALFSMDKCELNVTEDALKAIAKLALERKTGAR 536
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 537 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIRA 579
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 324 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
>gi|281347326|gb|EFB22910.1| hypothetical protein PANDA_002175 [Ailuropoda melanoleuca]
Length = 607
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 358 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 416
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 417 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 476
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 477 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 536
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 537 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 579
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 324 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 361
>gi|291402838|ref|XP_002718046.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 2
[Oryctolagus cuniculus]
Length = 633
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|291402836|ref|XP_002718045.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1
[Oryctolagus cuniculus]
Length = 619
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 370 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 428
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 429 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 488
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 489 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 548
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 549 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 591
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 338 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 336 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
>gi|410908575|ref|XP_003967766.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Takifugu rubripes]
Length = 624
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 180/223 (80%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI+NVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 375 LLKLLEGTIINVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 433
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S A + +EKD LK VEARDLI+FGMIPEFVGR P+
Sbjct: 434 TPSNLGKGRRAAAAADLANSSGETDAVAEIEEKDRLLKHVEARDLIEFGMIPEFVGRLPV 493
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + AL+AIAR+ALE+KTGAR
Sbjct: 494 VVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCELNVNKAALRAIARMALERKTGAR 553
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + +D V + P Y+R
Sbjct: 554 GLRSIMEKLLLEPMFEVPHSDIVAVEVDKDAVQGKSQPRYVRA 596
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 343 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 341 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
>gi|432861349|ref|XP_004069624.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Oryzias latipes]
Length = 624
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 180/223 (80%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 375 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 433
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN S + +EKD LK VEARDLI+FGMIPEFVGR P+
Sbjct: 434 TPSNMGKGRRAAAAADLANSSGETDTVAEIEEKDRLLKHVEARDLIEFGMIPEFVGRLPV 493
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 494 VVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCELNVTQDALRAIARLALERKTGAR 553
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GL++IME LLL+ M+EVP SD++ V + +D V + P YIR
Sbjct: 554 GLKSIMEKLLLEPMFEVPQSDVIAVELDKDVVQGKSTPRYIRA 596
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 341 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 343 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
>gi|327283765|ref|XP_003226611.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Anolis carolinensis]
Length = 630
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 381 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 439
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN + + ++D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 440 TPSNLGKGRRAAAAADLANLGSETNTQQDMEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 499
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 500 VVPLHSLDEKTLVRILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 559
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P Y+R
Sbjct: 560 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKDPGYVRA 602
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 347 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 384
>gi|395502664|ref|XP_003755697.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Sarcophilus harrisii]
Length = 631
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 183/223 (82%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 382 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 440
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P+ GRRAA+ ADLAN+S +A +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 441 TPANLGKGRRAAAAADLANRSGESNAHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 500
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 501 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 560
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 561 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 603
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 348 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 385
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 385
>gi|126277064|ref|XP_001367093.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial isoform 2 [Monodelphis
domestica]
Length = 617
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 368 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 426
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 427 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 486
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 487 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 546
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 547 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 589
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 336 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 371
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 334 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 371
>gi|126277060|ref|XP_001367043.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial isoform 1 [Monodelphis
domestica]
Length = 631
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 382 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 440
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 441 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 500
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLAL++KTGAR
Sbjct: 501 VVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKTGAR 560
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 561 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 603
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 348 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 385
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 385
>gi|312375337|gb|EFR22728.1| hypothetical protein AND_14288 [Anopheles darlingi]
Length = 699
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/231 (63%), Positives = 185/231 (80%), Gaps = 17/231 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGTIVNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI+RR NEKYLGFG
Sbjct: 438 MLKMLEGTIVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFG 497
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIP-------- 131
P++ S GRRAA Q++A + D E+DA LK+V+A+DL++FGMIP
Sbjct: 498 MPASSSEGRRAA-------QASASPMDNDQAERDANLKKVQAKDLVEFGMIPVSAMEAIA 550
Query: 132 -EFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
EFVGRFP+LVPFHSL+ ++LVRILTEP+NA++ QY+ L MD+V+L+F+ EAL+ IA+L
Sbjct: 551 IEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKALLGMDQVELSFTDEALKQIAQL 610
Query: 191 ALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
A+E++TGARGLRAIME+LLL+ M+EVPGSD+ V ITE++V + P Y+R
Sbjct: 611 AMERQTGARGLRAIMETLLLEPMFEVPGSDVKGVSITEESV-RGGEPVYVR 660
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 404 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 441
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 407 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 441
>gi|348555445|ref|XP_003463534.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 1 [Cavia
porcellus]
Length = 633
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE KTGAR
Sbjct: 503 VVPLHSLSEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALEWKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIICVEVDKEVVEGKKEPGYIRA 605
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|326680427|ref|XP_002667004.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Danio rerio]
Length = 618
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 182/223 (81%), Gaps = 2/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 373 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 431
Query: 80 APSTESAGRRAASLADLANQSAA-VSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
PS GRRAA+ ADLAN S + A + +EKD L+ VEARDLI+FGMIPEFVGR P
Sbjct: 432 TPSNLGKGRRAAAAADLANTSGTEMDAMAEIEEKDRLLRIVEARDLIEFGMIPEFVGRLP 491
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++VP HSL++E+LV+ILTEP+NA++ QYQ LF+MDK +L + +AL+AIARLALE+KTGA
Sbjct: 492 VVVPLHSLDEEMLVQILTEPRNAVVPQYQALFSMDKCELNVTSDALRAIARLALERKTGA 551
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 552 RGLRSIMEKLLLEPMFEVPQSDIIAVELNKDVVQGKCEPRYIR 594
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 339 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 376
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 341 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 376
>gi|348555447|ref|XP_003463535.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like isoform 2 [Cavia
porcellus]
Length = 619
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 370 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 428
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 429 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 488
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE KTGAR
Sbjct: 489 VVPLHSLSEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALEWKTGAR 548
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 549 GLRSIMEKLLLEPMFEVPNSDIICVEVDKEVVEGKKEPGYIRA 591
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 338 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 336 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 373
>gi|260813876|ref|XP_002601642.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
gi|229286941|gb|EEN57654.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
Length = 664
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/226 (63%), Positives = 182/226 (80%), Gaps = 1/226 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPE+N+ RKLRGE V VDTTNILFVASGA+NGLDR+ISRR++EKYLGFG
Sbjct: 394 LLKLLEGTVVNVPERNT-RKLRGESVPVDTTNILFVASGAFNGLDRIISRRRHEKYLGFG 452
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP+ S GRRAA+ +D+ + + +A+ DN+EKDA L V+ARDLI+FGMIPEFVGR P+
Sbjct: 453 APANISPGRRAATASDVQSMTEGTNAQADNEEKDAMLAHVQARDLIEFGMIPEFVGRLPV 512
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL+Q +LVRILT+P+NA+I QYQ LF MDKV L S +AL+AIA+LALE+KTGAR
Sbjct: 513 VVALQSLSQAMLVRILTQPRNALIPQYQALFQMDKVQLEVSDDALEAIAQLALERKTGAR 572
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVF 245
GLRAIME+LLLD M+EVPGSDI+ V + ++ +L Y + F
Sbjct: 573 GLRAIMETLLLDPMFEVPGSDIVGVRLEKEVILGQKPAQYFSLLDF 618
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 362 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 397
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 360 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 397
>gi|387015190|gb|AFJ49714.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial-like [Crotalus adamanteus]
Length = 640
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 185/222 (83%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 391 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 449
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S GRRAA+ ADLANQ + S+E++ +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 450 ASSNLGKGRRAAAAADLANQGSESSSEQEMEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 509
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA+I QYQ LF+MDK +LT + +AL+AIARLAL++KTGAR
Sbjct: 510 VVPLHSLDEKTLVRILTEPRNAVIPQYQALFSMDKCELTVTEDALKAIARLALDRKTGAR 569
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + +D V P YIR
Sbjct: 570 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVVEGKKEPGYIR 611
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 359 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 394
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 357 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 394
>gi|148223569|ref|NP_001090028.1| ClpX caseinolytic peptidase X homolog [Xenopus laevis]
gi|66911151|gb|AAH97522.1| MGC114642 protein [Xenopus laevis]
Length = 624
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 149/222 (67%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFV+SGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 375 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVSSGAFNGLDRIISRRKNEKYLGFG 433
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S GRRAA+ ADLAN S +A +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 434 IASNMGKGRRAAAAADLANNSPESNAVQDIEEKDRLLRLVEARDLIEFGMIPEFVGRLPV 493
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L+ S +AL+AIARLALE+KTGAR
Sbjct: 494 VVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSISEDALRAIARLALERKTGAR 553
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + ++ V P Y++
Sbjct: 554 GLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVVEGKKDPRYVK 595
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 341 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 343 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 378
>gi|52219008|ref|NP_001004581.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Danio rerio]
gi|51859089|gb|AAH81643.1| Zgc:92303 [Danio rerio]
Length = 610
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/224 (69%), Positives = 183/224 (81%), Gaps = 2/224 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKN+ RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 360 LLKLLEGTIVNVPEKNT-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 418
Query: 80 APSTESAGRRAASLADLANQSAA-VSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
PS GRRAA+ ADLAN + V A + +EKD LK VEARDLI+FGMIPEFVGR P
Sbjct: 419 TPSNMGKGRRAAAAADLANTTGGEVDAVAEIEEKDRLLKHVEARDLIEFGMIPEFVGRLP 478
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++VP HSL++E LVRILTEP+NA++ QYQ LF+MDK +L +P+AL+AIARLALE+KTGA
Sbjct: 479 VVVPLHSLDEETLVRILTEPRNAVVPQYQALFSMDKCELNMTPDALRAIARLALERKTGA 538
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
RGLR+IME LLLD M+EVP SDI+ V +++D V P YIR
Sbjct: 539 RGLRSIMEKLLLDPMFEVPHSDIVSVDVSKDVVQGKAPPQYIRA 582
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 328 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 363
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 326 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 363
>gi|395822807|ref|XP_003784700.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial [Otolemur garnettii]
Length = 620
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 147/212 (69%), Positives = 177/212 (83%), Gaps = 1/212 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 371 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 429
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L VEARDLI+FGMIPEFVGR P+
Sbjct: 430 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLCHVEARDLIEFGMIPEFVGRLPV 489
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 490 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 549
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
GLR+IME LLL+ M+EVP SDI+ V + ++ V
Sbjct: 550 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 581
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 337 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 374
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 339 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 374
>gi|47220509|emb|CAG05535.1| unnamed protein product [Tetraodon nigroviridis]
Length = 669
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 149/229 (65%), Positives = 179/229 (78%), Gaps = 8/229 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEK----- 74
LL +LEGT+VNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEK
Sbjct: 385 LLKLLEGTVVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKVSWLH 443
Query: 75 --YLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPE 132
YLGFG PS GRRAA+ ADLAN S + +EKD LK VEARDLI+FGMIPE
Sbjct: 444 CQYLGFGTPSNLGKGRRAAAAADLANSSGETDTVAEIEEKDRLLKHVEARDLIEFGMIPE 503
Query: 133 FVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192
FVGR P++VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L + AL+AIAR+AL
Sbjct: 504 FVGRLPVVVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCELNVNEAALRAIARMAL 563
Query: 193 EKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
E+KTGARGLR+IME LLL+ M+EVP SDI+ V + +D V + P Y+R
Sbjct: 564 ERKTGARGLRSIMEKLLLEPMFEVPHSDIVAVEVDKDAVQGKSQPRYVR 612
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>gi|113931262|ref|NP_001039078.1| ClpX caseinolytic peptidase X homolog [Xenopus (Silurana)
tropicalis]
gi|89273895|emb|CAJ83484.1| ClpX caseinolytic protease X homolog [Xenopus (Silurana)
tropicalis]
Length = 377
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 148/222 (66%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 128 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 186
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S GRRAA+ ADLAN S+ + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 187 IASNLGKGRRAAAAADLANASSESNVVQDIEEKDRLLRLVEARDLIEFGMIPEFVGRLPV 246
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LVRILTEP+NA++ QYQ LF+MDK +L+ + +AL+AIARLALE+KTGAR
Sbjct: 247 VVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSINEDALRAIARLALERKTGAR 306
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME LLL+ M+EVP SDI+ V + ++ V P Y++
Sbjct: 307 GLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVVEGKKDPRYVK 348
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 94 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 131
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 96 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 131
>gi|198477567|ref|XP_002136555.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
gi|198142843|gb|EDY71556.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
Length = 666
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 9/224 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 413 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 472
Query: 80 APSTESA--GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
PS+ S RRA QS A + D +E+D L +V+ARDL++FGMIPEFVGRF
Sbjct: 473 MPSSSSGSGNRRAV-------QSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRF 525
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++VPFHSLN +LVRILTEP+NA++ QY+ L +D VDLTF +A+++IA+LA+E+ TG
Sbjct: 526 PVIVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHTG 585
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
ARGLR+IME LLLD M+ VPGSDI VHIT + V + P Y R
Sbjct: 586 ARGLRSIMEQLLLDPMFIVPGSDIRGVHITGECVRGQSTPVYNR 629
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 379 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
>gi|125777787|ref|XP_001359727.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
gi|54639477|gb|EAL28879.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
Length = 666
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 9/224 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 413 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 472
Query: 80 APSTESA--GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
PS+ S RRA QS A + D +E+D L +V+ARDL++FGMIPEFVGRF
Sbjct: 473 MPSSSSGSGNRRAV-------QSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRF 525
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++VPFHSLN +LVRILTEP+NA++ QY+ L +D VDLTF +A+++IA+LA+E+ TG
Sbjct: 526 PVIVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHTG 585
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
ARGLR+IME LLLD M+ VPGSDI VHIT + V + P Y R
Sbjct: 586 ARGLRSIMEQLLLDPMFIVPGSDIRGVHITGECVRGQSTPVYNR 629
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 379 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
>gi|339254578|ref|XP_003372512.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
[Trichinella spiralis]
gi|316967042|gb|EFV51535.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
[Trichinella spiralis]
Length = 580
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 178/215 (82%), Gaps = 2/215 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEG++VNVP+ S RK+RGE +QVDTTN+LFVASGA+NGLD+++ RRK+ KYLGFG
Sbjct: 343 LLKMLEGSVVNVPQHGS-RKMRGENIQVDTTNVLFVASGAFNGLDKIVGRRKHSKYLGFG 401
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A + +S GRRAA+LAD+A+ + + + + EKDA L++VEA DLI+FGMIPEFVGR P
Sbjct: 402 AITNDDSPGRRAAALADVASLDSTANPDLELAEKDALLREVEAHDLIEFGMIPEFVGRLP 461
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+LV FHSL+Q LLVRILTEP+N++I QY+ LFTMD++DL F+ +AL AIARLAL+KKTGA
Sbjct: 462 VLVQFHSLDQNLLVRILTEPQNSLIAQYKALFTMDQIDLHFTDDALNAIARLALQKKTGA 521
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLK 233
RGLRAI+ES+LLD M+E PG+D+ V +T D V K
Sbjct: 522 RGLRAIVESILLDPMFECPGTDVSSVTVTADAVNK 556
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 35/38 (92%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQ +LK+
Sbjct: 309 AQMGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQALLKM 346
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 34/35 (97%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQ +LK+
Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQALLKM 346
>gi|291221693|ref|XP_002730831.1| PREDICTED: ClpX caseinolytic protease X homolog [Saccoglossus
kowalevskii]
Length = 608
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/222 (64%), Positives = 181/222 (81%), Gaps = 1/222 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPE++S RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRK +KYLGFG
Sbjct: 368 LLKLLEGTIVNVPERSS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKQQKYLGFG 426
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP+ S GRRAA+ D+ + + A+ DN+E+DA L VE+RDLI+FGMIPEFVGRFP+
Sbjct: 427 APANISPGRRAATAGDILSITEGQDAKADNEERDALLALVESRDLIEFGMIPEFVGRFPV 486
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SL++E+LVRILTEP+NA++ Q+ L MDK +LTF+P AL+AIA++ALE+KTGAR
Sbjct: 487 AVSLTSLDEEMLVRILTEPRNALVPQFHALLGMDKAELTFTPGALKAIAQMALERKTGAR 546
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E +LLD+M+EVPGS I+ VH+ +D V N YIR
Sbjct: 547 GLRAIVEGVLLDAMFEVPGSGIVGVHVDDDVVKGNKPAHYIR 588
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 17/76 (22%)
Query: 201 LRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQ 260
+ +++ LL+D+ + H+ + KN+ FL V I +PGIHQ
Sbjct: 313 IESVIAKLLMDANF----------HVDKAQQGKNSN-------TFLSSVKLICKIPGIHQ 355
Query: 261 LRDVGGEGVQQGMLKV 276
LRDVGGEGVQQG+LK+
Sbjct: 356 LRDVGGEGVQQGLLKL 371
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 285 VFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
FL V I +PGIHQLRDVGGEGVQQG+LK+
Sbjct: 339 TFLSSVKLICKIPGIHQLRDVGGEGVQQGLLKL 371
>gi|195157162|ref|XP_002019465.1| GL12413 [Drosophila persimilis]
gi|194116056|gb|EDW38099.1| GL12413 [Drosophila persimilis]
Length = 666
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 9/224 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 413 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 472
Query: 80 APSTESA--GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
PS+ S RRA QS A + D +E+D L +V+ARDL++FGMIPEFVGRF
Sbjct: 473 MPSSSSGSGNRRAV-------QSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRF 525
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++VPFHSLN +LVRILTEP+NA++ QY+ L +D VDLTF +A+++IA+LA+E+ TG
Sbjct: 526 PVIVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHTG 585
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
ARGLR+IME LLLD M+ VPGSDI VHIT + V + P Y R
Sbjct: 586 ARGLRSIMEQLLLDPMFIVPGSDIRGVHITGECVRGQSTPVYNR 629
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 379 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
>gi|27374380|gb|AAO01118.1| CG4538-PA [Drosophila pseudoobscura]
Length = 666
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 9/224 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEGT+VNVPE+NSPRKLRGE VQVDTTNILFVASGAY GLDRLI RR NEKYLGFG
Sbjct: 413 MLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFG 472
Query: 80 APSTESA--GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
PS+ S RRA QS A + D +E+D L +V+ARDL++FGMIPEFVGRF
Sbjct: 473 MPSSSSGSGNRRAV-------QSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRF 525
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++VPFHSLN +LVRILTEP+NA++ QY+ L +D VDLTF +A+++IA+LA+E+ TG
Sbjct: 526 PVIVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHTG 585
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
ARGLR+IME LLLD M+ VPGSDI VHIT + V + P Y R
Sbjct: 586 ARGLRSIMEQLLLDPMFIVPGSDIRGVHITGECVRGQSTPVYNR 629
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 379 AQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 416
>gi|443682684|gb|ELT87190.1| hypothetical protein CAPTEDRAFT_153203 [Capitella teleta]
Length = 610
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 167/200 (83%), Gaps = 2/200 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L +LEGTIVNVPEK S RKLRGE + VDTTNILFVASGA+NGLD+++ RR NEKYLGFG
Sbjct: 368 MLKLLEGTIVNVPEKGS-RKLRGESIAVDTTNILFVASGAFNGLDKIVGRRNNEKYLGFG 426
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P +S GRRA + ADL + S A + K KD+ + + EARD+IDFGMIPEF+GRFP+
Sbjct: 427 LPE-KSEGRRAITNADLKSYSDTDDAVAEIKAKDSLIMKAEARDIIDFGMIPEFIGRFPV 485
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFH+L +E+L+RILTEP+NA++ QYQ LF MDKV+L F+ +AL+AI+RLA+E+KTGAR
Sbjct: 486 IVPFHNLTEEMLMRILTEPRNALLPQYQALFHMDKVNLEFTNDALKAISRLAMERKTGAR 545
Query: 200 GLRAIMESLLLDSMYEVPGS 219
GLRAIME++LL+ M+++PGS
Sbjct: 546 GLRAIMENILLEPMFDIPGS 565
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 35/36 (97%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG VPGIHQLRDVGGEGVQQGMLK+
Sbjct: 336 QGIVFLDEVDKIGCVPGIHQLRDVGGEGVQQGMLKL 371
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 35/38 (92%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG VPGIHQLRDVGGEGVQQGMLK+
Sbjct: 334 AQQGIVFLDEVDKIGCVPGIHQLRDVGGEGVQQGMLKL 371
>gi|196001235|ref|XP_002110485.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
gi|190586436|gb|EDV26489.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
Length = 563
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 175/223 (78%), Gaps = 4/223 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEM--VQVDTTNILFVASGAYNGLDRLISRRKNEKYLG 77
LL MLEG+IVNVPEK S RK+RG+ VDTT+ILFVASGA+NGLDR++SRRK++K+LG
Sbjct: 306 LLKMLEGSIVNVPEK-SLRKMRGDANSFAVDTTHILFVASGAFNGLDRVVSRRKHKKFLG 364
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGAPS + GRRAA+ A LA+ S+ ED KE+D L VEA+D+IDFG+IPEFVGRF
Sbjct: 365 FGAPSLQKLGRRAAAEASLASDPIE-SSIEDLKERDLLLSDVEAQDMIDFGLIPEFVGRF 423
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P+L SL++E L+RILTEP+NA+++QY+ LF MDKV L + A AIA++AL+KKTG
Sbjct: 424 PVLCHIESLDEEALMRILTEPENALLRQYKALFEMDKVQLAITDGACLAIAKMALQKKTG 483
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
ARGLR+IME LLLDSM+EVPGSDI+ + I ED V +P YI
Sbjct: 484 ARGLRSIMERLLLDSMFEVPGSDIVEIIIDEDVVNGRKSPVYI 526
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 259 HQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
+ V G+ +Q VS A GIVFLDEVDKIG VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 252 EDIESVIGKLLQDANYNVSR-AQQGIVFLDEVDKIGCVPGIHQLRDVGGEGVQQGLLKM 309
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 35/36 (97%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 274 QGIVFLDEVDKIGCVPGIHQLRDVGGEGVQQGLLKM 309
>gi|198429767|ref|XP_002119878.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
subunit clpX-like, mitochondrial [Ciona intestinalis]
Length = 393
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 164/224 (73%), Gaps = 3/224 (1%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPE+NS RKLRG+ V VDTTNILFVASGA+NGL++ ISRR NEK LGF
Sbjct: 136 LLKMLEGTVVNVPERNS-RKLRGDSVVVDTTNILFVASGAFNGLEKFISRRMNEKSLGFS 194
Query: 80 APSTESAGRRAASLADLA--NQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
S S ++ Q SA E+NKE+D LK EA DL++FGMIPEFVGR
Sbjct: 195 LHSKTSTTKKDEIFKQTLGFEQQLLKSAIEENKERDELLKHTEASDLVEFGMIPEFVGRL 254
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PI VP HSL+ E L +ILTEP+NA++ Q++ LF MDK DL +P AL+AIA LALE+KTG
Sbjct: 255 PITVPLHSLSNEHLTKILTEPRNAVVPQFEALFNMDKSDLAITPSALRAIADLALERKTG 314
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
ARGLR+IME L+LD MY+VPGSDI+ V I +D V +P YIR
Sbjct: 315 ARGLRSIMEQLMLDPMYDVPGSDIIGVCIDDDVVRGKKSPHYIR 358
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 35/36 (97%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKI +VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 104 QGIVFLDEVDKISSVPGIHQLRDVGGEGVQQGLLKM 139
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKI +VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 102 AEQGIVFLDEVDKISSVPGIHQLRDVGGEGVQQGLLKM 139
>gi|156358407|ref|XP_001624511.1| predicted protein [Nematostella vectensis]
gi|156211296|gb|EDO32411.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 171/223 (76%), Gaps = 5/223 (2%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPE+NS RK+RG+ V VDT+NILFVASGA+NGLD++I RRK +K LGFG
Sbjct: 287 LLKILEGTVVNVPERNS-RKMRGDTVAVDTSNILFVASGAFNGLDKIIRRRKQDKVLGFG 345
Query: 80 APSTESAGRRAASLADLANQSAAVSAE--EDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
AP+ + AS + +AV ++ +DN E+DA L+ VEA+DLIDFGMIPEF+GR
Sbjct: 346 APAIHHLDK--ASHDSPIDIFSAVKSDVRDDNAERDALLRSVEAKDLIDFGMIPEFIGRL 403
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++V HSL+++ LV+ILTEP+N ++ QYQ LF MDKVDL +ALQ IA+ ALEKKTG
Sbjct: 404 PVVVSLHSLDEDTLVKILTEPRNVLVPQYQALFAMDKVDLQLESDALQLIAQQALEKKTG 463
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
ARGLRAI+E+LLLD M++ PGSDI+ V ITED V + Y+
Sbjct: 464 ARGLRAILENLLLDPMFDAPGSDIVTVRITEDVVRREKPAEYV 506
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 35/36 (97%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPG+H LRDVGGEGVQQG+LK+
Sbjct: 255 QGIVFLDEVDKIGAVPGVHNLRDVGGEGVQQGLLKI 290
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPG+H LRDVGGEGVQQG+LK+
Sbjct: 253 AQQGIVFLDEVDKIGAVPGVHNLRDVGGEGVQQGLLKI 290
>gi|358341092|dbj|GAA48853.1| ATP-dependent Clp protease ATP-binding subunit ClpX, partial
[Clonorchis sinensis]
Length = 903
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/221 (59%), Positives = 166/221 (75%), Gaps = 11/221 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L +LEG+IVNVP+ RKLRGE VQVDTTNILF+ASGA+NGLD+++ RRK++K +GF
Sbjct: 473 MLKLLEGSIVNVPDGKGSRKLRGETVQVDTTNILFIASGAFNGLDKIVGRRKHKKTVGFA 532
Query: 80 ---------APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMI 130
P E R L L N S SA E+N E+D L++VEARDLIDFG+I
Sbjct: 533 DLSSLPDPHQPRAEVNPEREG-LDSLFN-SFESSATEENAERDRLLEEVEARDLIDFGII 590
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEFVGRFPI+ HSLN+E+LVRILTEP+NA+++QYQ+LF++DK +L +P AL+AIAR
Sbjct: 591 PEFVGRFPIITVLHSLNEEMLVRILTEPRNALLKQYQLLFSIDKCELKVTPSALRAIARE 650
Query: 191 ALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
AL ++TGARGLR+I+E LLL + YEVPGSDI V ITED V
Sbjct: 651 ALSQRTGARGLRSILERLLLPARYEVPGSDIASVVITEDVV 691
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKI + G +H +RDVGGEGVQQGMLK+
Sbjct: 440 QGIVFLDEVDKISSKAGFLHSIRDVGGEGVQQGMLKL 476
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKV 317
GE ++ + K+ A F GIVFLDEVDKI + G +H +RDVGGEGVQQGMLK+
Sbjct: 417 GEDIESVISKLLQDANFNVERAQQGIVFLDEVDKISSKAGFLHSIRDVGGEGVQQGMLKL 476
>gi|321470305|gb|EFX81282.1| hypothetical protein DAPPUDRAFT_102627 [Daphnia pulex]
Length = 375
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/198 (66%), Positives = 160/198 (80%), Gaps = 20/198 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY--LG 77
+L MLEGTIVNVPE+N+PRKLRGE +QVDTTNILFVASGAY GLDR++SRRKNEK LG
Sbjct: 195 MLKMLEGTIVNVPERNAPRKLRGETIQVDTTNILFVASGAYTGLDRIVSRRKNEKVIILG 254
Query: 78 FGAPST-ESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGR 136
FGA S+ SAGRRAA+ A +A S+ V ++D E+DAFL+ VEAR+LIDFGMIPEFVGR
Sbjct: 255 FGASSSGNSAGRRAATQAGMAEVSSEV--DDDESERDAFLRAVEARNLIDFGMIPEFVGR 312
Query: 137 FPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT 196
FP++VPFHSL+Q+ L +Q+LF MDKV+LTFSPEAL+ I++ A+EKKT
Sbjct: 313 FPVIVPFHSLSQDTL--------------FQMLFGMDKVELTFSPEALRTISK-AIEKKT 357
Query: 197 GARGLRAIMESLLLDSMY 214
GARGLRAIME+LLLD M+
Sbjct: 358 GARGLRAIMETLLLDEMF 375
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 163 QGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 198
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK+
Sbjct: 161 AQQGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKM 198
>gi|449677224|ref|XP_002167314.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Hydra magnipapillata]
Length = 614
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 161/220 (73%), Gaps = 7/220 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPE+ S RK+RGE V VDTTNI+FVASGA+NGL+ ++ RR+ +K LGFG
Sbjct: 376 LLKMLEGTVVNVPERTS-RKMRGENVPVDTTNIMFVASGAFNGLEDIVRRRQQDKSLGFG 434
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ S +++ + DL S +E ++DA L QVEARDLI +GMIPEFVGR PI
Sbjct: 435 S----STKKKSNEIMDLQTISKLEPSERS--DRDALLAQVEARDLIGYGMIPEFVGRLPI 488
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +SL+ LV ILTEPKNA+I QYQ LF MDKVDL F+ +AL+ IA LA E+KTGAR
Sbjct: 489 LVSINSLDVNALVTILTEPKNALIPQYQHLFKMDKVDLHFTKDALRKIALLAQERKTGAR 548
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GL++I+E +LLD M++ PGS+I V+I EDTV P Y
Sbjct: 549 GLKSILEKILLDPMFDAPGSEISAVYIDEDTVTGKKKPGY 588
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 279 LAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
LA GI+FLDEVDKI V G HQ+RDVGGEGVQQG+LK+
Sbjct: 341 LAQQGIIFLDEVDKISCVSGFHQVRDVGGEGVQQGLLKM 379
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+FLDEVDKI V G HQ+RDVGGEGVQQG+LK+
Sbjct: 344 QGIIFLDEVDKISCVSGFHQVRDVGGEGVQQGLLKM 379
>gi|241558211|ref|XP_002400180.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
gi|215499741|gb|EEC09235.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
Length = 358
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 142/168 (84%)
Query: 75 YLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFV 134
YLGFGAP +S GRRAAS A LAN S SA +DN E+DA L+ VEARDLI+FGMIPEFV
Sbjct: 169 YLGFGAPVLDSPGRRAASQAGLANASPHSSASDDNAERDALLRGVEARDLIEFGMIPEFV 228
Query: 135 GRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEK 194
GRFP+LVPFHSL++++LV+ILTEP+NA++ QYQ+LF MDKV+LTF +AL+AIARLA+E+
Sbjct: 229 GRFPVLVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFDQDALRAIARLAMER 288
Query: 195 KTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
KTGARGLRAIME++LL+ M+E+PGSD++ VHI+ + + AP YI+G
Sbjct: 289 KTGARGLRAIMETILLEPMFEIPGSDVVSVHISHECAMGKCAPLYIKG 336
>gi|322790222|gb|EFZ15221.1| hypothetical protein SINV_05303 [Solenopsis invicta]
Length = 404
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/223 (57%), Positives = 164/223 (73%), Gaps = 13/223 (5%)
Query: 18 WKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLG 77
+LL MLEGTI+ V KN+ + + E + VDTTNILFVASGAY+ LD+LI+RR+ +KY
Sbjct: 191 QELLKMLEGTIIYV--KNNRLQDKNE-IPVDTTNILFVASGAYSDLDKLIARRELKKYPD 247
Query: 78 FGAPSTESAGRRAASLAD-LANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGR 136
+T+S + A+LAD +AN S + E+DA ++QVE +DLI FGMIPEF+GR
Sbjct: 248 -ETSTTKSLDKETATLADDIANISLS--------ERDALIQQVETKDLIKFGMIPEFIGR 298
Query: 137 FPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT 196
FP+LVPFH+LN+++L RIL EPKNA+I QYQ+LF+ DKV LTF AL AIA LALEK T
Sbjct: 299 FPVLVPFHTLNEDVLARILIEPKNAIIPQYQMLFSKDKVKLTFDKNALTAIASLALEKGT 358
Query: 197 GARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GARGLR I+ESLLL+ M+E+PGSDI+ VHITE V P Y
Sbjct: 359 GARGLRTIIESLLLEPMFEIPGSDIVSVHITEQCVRGVEKPLY 401
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPN 328
A GIVFLDEVDKI + I++ RDV GEGVQQ +LK+ + Y N
Sbjct: 161 AEKGIVFLDEVDKIKTM--INKGRDVAGEGVQQELLKMLEGTIIYVKNN 207
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKI + I++ RDV GEGVQQ +LK+
Sbjct: 163 KGIVFLDEVDKIKTM--INKGRDVAGEGVQQELLKM 196
>gi|195494256|ref|XP_002094759.1| GE20032 [Drosophila yakuba]
gi|194180860|gb|EDW94471.1| GE20032 [Drosophila yakuba]
Length = 812
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 153/223 (68%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L +LEG++V++ + R + VQ+DTTNILFVASGAY LD++I+RR NEK
Sbjct: 573 MLKILEGSVVSLID----RSQQFRKVQMDTTNILFVASGAYTALDKIIARRLNEKD---- 624
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+D+A S A+ + D ++D L +V+A DL +FGMIPEFVGRFPI
Sbjct: 625 --------------SDVAPTSGALPPDADQHKRDKCLSKVQACDLAEFGMIPEFVGRFPI 670
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPFHSLN +LVRILTEP++A++ QY+ L +D VDLTFS +AL+++A+LA+E TGAR
Sbjct: 671 LVPFHSLNANMLVRILTEPRSALVSQYKALLRLDGVDLTFSEDALESVAQLAIEMNTGAR 730
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLLD M+ VPGSDI VHIT D V+ P Y R
Sbjct: 731 GLRSIMEQLLLDPMFSVPGSDIRGVHITADNVMGKAKPEYRRA 773
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIV+LDEVDKI A+ G Q RD+GGEGVQQGMLK+
Sbjct: 539 AQTGIVYLDEVDKICALSGTKQRRDIGGEGVQQGMLKI 576
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIV+LDEVDKI A+ G Q RD+GGEGVQQGMLK+
Sbjct: 542 GIVYLDEVDKICALSGTKQRRDIGGEGVQQGMLKI 576
>gi|360043166|emb|CCD78578.1| putative atp-dependent clp protease ATP-binding subunit clpx
[Schistosoma mansoni]
Length = 320
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 145/196 (73%), Gaps = 10/196 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L +LEG++VNVP+ SPRKLRGE VDTTNILF+A GA+NGLD++ISRRK++K +GF
Sbjct: 118 MLKLLEGSVVNVPDVKSPRKLRGETFVVDTTNILFIACGAFNGLDKIISRRKHKKTIGFD 177
Query: 80 --APSTESAGRRAA------SLADLAN--QSAAVSAEEDNKEKDAFLKQVEARDLIDFGM 129
+ES + S D N QS SA E+N E+D L++VEA DLI +GM
Sbjct: 178 MLTSMSESTAQDKCTSPVNPSATDSLNLFQSFESSAHEENDERDKLLQEVEANDLITYGM 237
Query: 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIAR 189
IPEFVGRFPI+ HSLN+E+LVR+LTEP+NA+I+QYQ+LF +D +L +P AL+AIAR
Sbjct: 238 IPEFVGRFPIITALHSLNEEMLVRVLTEPRNALIKQYQLLFNIDGCELRVTPGALKAIAR 297
Query: 190 LALEKKTGARGLRAIM 205
LAL + TGARGLR+++
Sbjct: 298 LALSQHTGARGLRSVL 313
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 279 LAAFGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 317
LA GIV LDE+DKI + G H RDV GEGVQQ MLK+
Sbjct: 82 LAQQGIVVLDEIDKISSKTGHHLSTRDVSGEGVQQAMLKL 121
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 276
+GIV LDE+DKI + G H RDV GEGVQQ MLK+
Sbjct: 85 QGIVVLDEIDKISSKTGHHLSTRDVSGEGVQQAMLKL 121
>gi|256082754|ref|XP_002577618.1| ATP-dependent clp protease ATP-binding subunit clpx [Schistosoma
mansoni]
Length = 320
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 145/196 (73%), Gaps = 10/196 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L +LEG++VNVP+ SPRKLRGE VDTTNILF+A GA+NGLD++ISRRK++K +GF
Sbjct: 118 MLKLLEGSVVNVPDVKSPRKLRGETFVVDTTNILFIACGAFNGLDKIISRRKHKKTIGFD 177
Query: 80 --APSTESAGRRAA------SLADLAN--QSAAVSAEEDNKEKDAFLKQVEARDLIDFGM 129
+ES + S D N QS SA E+N E+D L++VEA DLI +GM
Sbjct: 178 MLTSMSESTAQDKCTSPVNPSATDSLNLFQSFESSAHEENDERDKLLQEVEANDLITYGM 237
Query: 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIAR 189
IPEFVGRFPI+ HSLN+E+LVR+LTEP+NA+I+QYQ+LF +D +L +P AL+AIAR
Sbjct: 238 IPEFVGRFPIITALHSLNEEMLVRVLTEPRNALIKQYQLLFNIDGCELRVTPGALKAIAR 297
Query: 190 LALEKKTGARGLRAIM 205
LAL + TGARGLR+++
Sbjct: 298 LALSQHTGARGLRSVL 313
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 279 LAAFGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 317
LA GIV LDE+DKI + G H RDV GEGVQQ MLK+
Sbjct: 82 LAQQGIVVLDEIDKISSKTGHHLSTRDVSGEGVQQAMLKL 121
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 276
+GIV LDE+DKI + G H RDV GEGVQQ MLK+
Sbjct: 85 QGIVVLDEIDKISSKTGHHLSTRDVSGEGVQQAMLKL 121
>gi|444730920|gb|ELW71289.1| Cartilage intermediate layer protein 1 [Tupaia chinensis]
Length = 2369
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/155 (72%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 1453 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 1511
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 1512 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 1571
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDK 174
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK
Sbjct: 1572 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDK 1606
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 131/168 (77%)
Query: 73 EKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPE 132
+KYLGFG PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPE
Sbjct: 1605 DKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPE 1664
Query: 133 FVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192
FVGR P++VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLAL
Sbjct: 1665 FVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLAL 1724
Query: 193 EKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
E+KTGARGLR+IME LLL+ M+EVP SDI+ V + ++ V P YI
Sbjct: 1725 ERKTGARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYI 1772
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 1421 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 1456
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 1419 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 1456
>gi|349602929|gb|AEP98916.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial-like protein, partial [Equus caballus]
Length = 315
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/154 (72%), Positives = 131/154 (85%), Gaps = 1/154 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 163 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 221
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 222 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 281
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MD
Sbjct: 282 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMD 315
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 129 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 166
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 131 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 166
>gi|340376496|ref|XP_003386768.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
clpX-like, mitochondrial-like [Amphimedon queenslandica]
Length = 509
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 153/220 (69%), Gaps = 10/220 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT V VPE++S +K+RG+ V VDTTNILFV SGA+ GLD+++ R NEK +GF
Sbjct: 275 LLKILEGTTVMVPERSS-KKMRGDTVPVDTTNILFVGSGAFTGLDKIVGTRLNEKAIGFD 333
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S+ S + S A ED +++D +L+QV++ DL+ +GMIPEF+GR P+
Sbjct: 334 LTSSPSL---------TPSSSPAEEQREDEEKRDFYLRQVQSNDLMAYGMIPEFIGRLPV 384
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SLN+ +LV ILT+P+N+++ QY +LF MD V LTF EALQ+IA+ AL + TGAR
Sbjct: 385 VVSLSSLNESMLVDILTKPQNSLVSQYNVLFNMDGVKLTFCDEALQSIAKQALARGTGAR 444
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239
GLR+IME LLLD M+E+P S I VHIT +V T P Y
Sbjct: 445 GLRSIMEQLLLDIMFEIPDSTISAVHITRSSVEDGTPPIY 484
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 31/36 (86%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
RGIVFLDEVDKI + HQ+RDVGGEGVQQG+LK+
Sbjct: 243 RGIVFLDEVDKIACMRSFHQVRDVGGEGVQQGLLKI 278
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GIVFLDEVDKI + HQ+RDVGGEGVQQG+LK+
Sbjct: 244 GIVFLDEVDKIACMRSFHQVRDVGGEGVQQGLLKI 278
>gi|326432268|gb|EGD77838.1| ATP-dependent protease ATP-binding subunit [Salpingoeca sp. ATCC
50818]
Length = 603
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 148/222 (66%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+VNVPEK + RGE +Q+DT+NILF+ASGA+NGL+ LI +R+ + +GF
Sbjct: 377 LLKLLEGTVVNVPEKGGRKSPRGETIQIDTSNILFIASGAFNGLEDLIKKREEKGSIGFN 436
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA-FLKQVEARDLIDFGMIPEFVGRFP 138
A + + NK D L++V+A DL+ FG+IPEFVGRFP
Sbjct: 437 A-----------------------ALKTPNKPVDGQMLRKVQADDLVKFGLIPEFVGRFP 473
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+V +L + LVR+LTEPKN+++ QY+ LF M+ DL FS +L+A A+ AL++KTGA
Sbjct: 474 CVVHLEALTESDLVRVLTEPKNSLVSQYRALFRMENTDLVFSSSSLRAFAKKALDRKTGA 533
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR +E +LL MY+VPGSDI V IT+ TVL++ AP YI
Sbjct: 534 RGLRTFIEQVLLQPMYDVPGSDIATVMITDKTVLEDEAPLYI 575
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 276
RGIVFLDE+DKI ++ G RDV GEGVQQ +LK+
Sbjct: 344 RGIVFLDEIDKISSISGSGVATRDVSGEGVQQALLKL 380
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKV 317
A GIVFLDE+DKI ++ G RDV GEGVQQ +LK+
Sbjct: 342 AQRGIVFLDEIDKISSISGSGVATRDVSGEGVQQALLKL 380
>gi|195590182|ref|XP_002084825.1| GD12633 [Drosophila simulans]
gi|194196834|gb|EDX10410.1| GD12633 [Drosophila simulans]
Length = 694
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 21/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEG++V++ + +L G+ VQ+DTTNILFVASGA+ GLD++I RR NEK
Sbjct: 467 MLKMLEGSVVSLTNRG---QLFGKAVQMDTTNILFVASGAFTGLDKIIERRINEKN---- 519
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+D+ + A +E+D L +V+A DL +FGMIPEFVG FPI
Sbjct: 520 --------------SDVTSTGEAGPPNAHQQERDKCLIKVQACDLAEFGMIPEFVGHFPI 565
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSL+ +LVRILTEP NA++ QY+ +F +D V+LTFS +AL + A+LA++ GAR
Sbjct: 566 IVPFHSLDAYMLVRILTEPPNALVSQYKAMFHLDGVELTFSHDALISAAQLAMKGNMGAR 625
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR IME LLLD M+ VPGSDI VHIT D V+ P Y R
Sbjct: 626 GLRPIMEQLLLDPMFLVPGSDIRGVHITADNVMGKAKPKYRRA 668
>gi|71982908|ref|NP_001021077.1| Protein D2030.2, isoform b [Caenorhabditis elegans]
gi|33589133|emb|CAE45047.1| Protein D2030.2, isoform b [Caenorhabditis elegans]
Length = 470
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DTT+ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 241 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTTDILFIASGAFSNLDKIVGRRLDKKALGFG 300
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
T S R +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 301 ---TSSGNVR-------------ISGDDSNSEVMRKRDELLSKADQGDLISFGMVPELVG 344
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LAL++K
Sbjct: 345 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALDRK 404
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + +L Y R
Sbjct: 405 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAILGEKEVEYSR 450
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 207 QGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 244
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 205 AQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 244
>gi|71982905|ref|NP_001021076.1| Protein D2030.2, isoform a [Caenorhabditis elegans]
gi|3875395|emb|CAA98115.1| Protein D2030.2, isoform a [Caenorhabditis elegans]
Length = 586
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DTT+ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 357 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTTDILFIASGAFSNLDKIVGRRLDKKALGFG 416
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
T S R +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 417 ---TSSGNVR-------------ISGDDSNSEVMRKRDELLSKADQGDLISFGMVPELVG 460
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LAL++K
Sbjct: 461 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALDRK 520
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + +L Y R
Sbjct: 521 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAILGEKEVEYSR 566
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 323 QGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 360
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 321 AQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 360
>gi|170597016|ref|XP_001902980.1| ATP-dependent Clp protease, ATP-binding subunit [Brugia malayi]
gi|158588999|gb|EDP28174.1| ATP-dependent Clp protease, ATP-binding subunit, putative [Brugia
malayi]
Length = 571
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 144/212 (67%), Gaps = 11/212 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQVDTT+ILFVASGA+ LDR++ +R ++K LG G
Sbjct: 355 LLKLVEGTLVNVKSSRKSMSTQQDFVQVDTTDILFVASGAFTALDRIVGKRLDKKTLGLG 414
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S + D AA+S K++D L+Q + DLI FG++PE VGRFP+
Sbjct: 415 AKSG------MQRITDDDKLEAAIS-----KKRDDLLRQADQGDLISFGIVPELVGRFPV 463
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSL++ +LVR+LTEP N+++ Q ++ F MD DL+FS +AL IA LALE+KTGAR
Sbjct: 464 IVPFHSLDKGMLVRVLTEPTNSLLAQKKLEFAMDGADLSFSSDALDEIAALALERKTGAR 523
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
LR+I+E +LL++ + VPGSDI VHI + V
Sbjct: 524 ALRSIVEKVLLEAKFTVPGSDIESVHINRECV 555
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 317
A GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 319 AQQGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 358
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 276
+GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 321 QGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 358
>gi|312072918|ref|XP_003139285.1| ATP-dependent Clp protease [Loa loa]
gi|307765553|gb|EFO24787.1| ATP-dependent Clp protease [Loa loa]
Length = 570
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 145/212 (68%), Gaps = 11/212 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQVDTT+ILFVASGA+ LDR++ +R ++K LG G
Sbjct: 353 LLKLVEGTLVNVKSSRKSMSTQQDFVQVDTTDILFVASGAFTALDRIVGKRLDKKTLGLG 412
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S + D AA+S K++D L+Q + DLI FG++PE VGRFP+
Sbjct: 413 ARSG------VQRITDDDKLEAAIS-----KKRDDLLRQADQGDLISFGIVPELVGRFPV 461
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSL++ +L+R+LTEP+N+++ Q ++ F MD DL+FS +AL IA LALE+KTGAR
Sbjct: 462 IVPFHSLDKGMLIRVLTEPRNSLLAQKKLEFAMDGADLSFSSDALDEIAALALERKTGAR 521
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
LR+I+E +LL++ + VPGSDI VHI + V
Sbjct: 522 ALRSIVEKVLLEAKFTVPGSDIESVHINRECV 553
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 276
+GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 319 QGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 356
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 317
A GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 317 AQQGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 356
>gi|341901777|gb|EGT57712.1| hypothetical protein CAEBREN_01262 [Caenorhabditis brenneri]
Length = 590
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DT++ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 360 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFG 419
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
T S R +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 420 ---TSSGNVR-------------ISGDDSNSEIMRKRDELLGKADQGDLISFGMVPELVG 463
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LALE+K
Sbjct: 464 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALERK 523
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + +L Y R
Sbjct: 524 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAILGEKEVEYSR 569
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 326 QGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 363
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 324 AQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 363
>gi|268562864|ref|XP_002638688.1| Hypothetical protein CBG11883 [Caenorhabditis briggsae]
Length = 572
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DT++ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 342 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFG 401
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
A+ + +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 402 T----------------ASGNVRISTDDSNSEIMRKRDELLGKADQGDLISFGMVPELVG 445
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LALE+K
Sbjct: 446 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALERK 505
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + ++ Y R
Sbjct: 506 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAIIGEKEVEYSR 551
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 308 QGIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKL 345
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 306 AQQGIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKL 345
>gi|308459430|ref|XP_003092035.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
gi|308254453|gb|EFO98405.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
Length = 638
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DT++ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 404 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFG 463
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
T S R +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 464 ---TSSGNVR-------------ISGDDSNSEVMRKRDELLGKADQGDLISFGMVPELVG 507
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LALE+K
Sbjct: 508 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALERK 567
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + +L Y R
Sbjct: 568 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAILGEREVEYSR 613
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 370 QGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 407
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 368 AQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 407
>gi|341886230|gb|EGT42165.1| hypothetical protein CAEBREN_03694 [Caenorhabditis brenneri]
Length = 590
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQ+DT++ILF+ASGA++ LD+++ RR ++K LGFG
Sbjct: 360 LLKLVEGTVVNVKSGKKGMGSQQDQVQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFG 419
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
T S R +S ++ N E +D L + + DLI FGM+PE VG
Sbjct: 420 ---TSSGNVR-------------ISGDDSNSEIMRKRDELLGKADQGDLISFGMVPELVG 463
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+LVPFHS ++++LVR++TEP+N+++ Q ++ F +D VDL+FS EAL+ +A+LALE+K
Sbjct: 464 RFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALERK 523
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
TGAR LR+I+E+ LL++ + VPGSDI VH++ + +L Y R
Sbjct: 524 TGARALRSILEAALLEAKFTVPGSDIESVHVSREAILGEKEVEYSR 569
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 276
+GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 326 QGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 363
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL--RDVGGEGVQQGMLKV 317
A GIVFLDEVDKI A H RDV GEGVQ +LK+
Sbjct: 324 AQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKL 363
>gi|324511044|gb|ADY44609.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
[Ascaris suum]
Length = 545
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 146/212 (68%), Gaps = 11/212 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQVDT+++LFVASGA+ LDR++ +R ++K LGFG
Sbjct: 326 LLKLVEGTVVNVKSGRKTVATQQDTVQVDTSDVLFVASGAFTALDRIVGKRLDQKMLGFG 385
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S G + + D A +++D L+Q + DLI FG++PE VGRFP+
Sbjct: 386 AKS----GNQRITADDKMESIVA-------RKRDELLQQADQGDLISFGIVPELVGRFPV 434
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHS ++ +LVR+LTEP N+++ Q ++ F +D VDL+FS +AL+ IA +ALE+KTGAR
Sbjct: 435 IVPFHSFDKNMLVRVLTEPANSLLAQMKLQFAIDGVDLSFSQDALEEIAEMALERKTGAR 494
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
LR+I+E +LL++ + VPGSDI VH+T D V
Sbjct: 495 ALRSIVEKVLLEAKFLVPGSDIESVHVTRDCV 526
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 317
A GIVFLDE+DKI A H RDV GEGVQ +LK+
Sbjct: 290 AQQGIVFLDEIDKIAAAHNTQSHAYRDVSGEGVQHALLKL 329
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 276
+GIVFLDE+DKI A H RDV GEGVQ +LK+
Sbjct: 292 QGIVFLDEIDKIAAAHNTQSHAYRDVSGEGVQHALLKL 329
>gi|402590135|gb|EJW84066.1| ATP-dependent Clp protease [Wuchereria bancrofti]
Length = 572
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 143/212 (67%), Gaps = 11/212 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+VNV + + VQVDTT+ILFVASGA+ LDR++ +R + K LG G
Sbjct: 355 LLKLVEGTLVNVKSSRKSMSTQQDFVQVDTTDILFVASGAFTALDRIVGKRLDRKTLGLG 414
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S + D AA+S K++D L+Q + DLI FG++PE VGRFP+
Sbjct: 415 AKSG------MQRITDDDKLEAAIS-----KKRDDLLRQADQGDLISFGIVPELVGRFPV 463
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSL++ +LVR+LTEP N+++ Q ++ F MD DL+FS +AL IA LALE++TGAR
Sbjct: 464 IVPFHSLDKGMLVRVLTEPTNSLLAQKKLEFAMDGADLSFSSDALDEIAALALERRTGAR 523
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
LR+I+E +LL++ + VPGSDI VHI + V
Sbjct: 524 ALRSIVEKVLLEAKFTVPGSDIESVHINRECV 555
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 276
+GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 321 QGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 358
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKV 317
A GIVFLDE+DKI A + H RDV GEGVQ +LK+
Sbjct: 319 AQQGIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKL 358
>gi|195327500|ref|XP_002030456.1| GM24560 [Drosophila sechellia]
gi|194119399|gb|EDW41442.1| GM24560 [Drosophila sechellia]
Length = 667
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 145/223 (65%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
+L MLEG++V++ + +L G+ VQ+DTTNILFVASGA+ GLD++I RR NEK
Sbjct: 441 MLKMLEGSVVSLTNRG---QLFGKAVQLDTTNILFVASGAFTGLDKIIERRINEK--NSD 495
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
ST AG A ++E+D L +V+A DL FGMIPE VG FPI
Sbjct: 496 VTSTGEAGPPNA-----------------HQERDKCLIKVQACDLAKFGMIPELVGHFPI 538
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFHSL+ +L RILTEP NA++ QY+ + +D V+LTFS +AL ++A+LA++ GAR
Sbjct: 539 IVPFHSLDAYMLFRILTEPPNALVSQYKAMLRLDGVELTFSHDALISVAQLAMKGNMGAR 598
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR IME LLLD M+ VPGSDI VHIT D V+ P Y R
Sbjct: 599 GLRPIMEQLLLDPMFLVPGSDIRGVHITADNVMGKAKPKYRRA 641
>gi|373455366|ref|ZP_09547202.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dialister
succinatiphilus YIT 11850]
gi|371935006|gb|EHO62779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dialister
succinatiphilus YIT 11850]
Length = 411
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 139/223 (62%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + EM+Q+DTTNILF+ GA+ G+D++I RR + +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPNQEMIQIDTTNILFICGGAFAGIDKVIDRRLTKSVMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R A L L+QV+ DL+ FG+IPEF+GR P+
Sbjct: 268 ADIEKKDDRDMAEL----------------------LQQVQPEDLLKFGLIPEFIGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP H LN+E LV+ILTEPKNA+++QYQ L MD VDL F A+ AIAR A+E+ TGAR
Sbjct: 306 IVPLHPLNEEALVKILTEPKNALVRQYQKLLAMDHVDLEFDDGAIHAIARQAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++ MYE+P D++ +TED V ++ P R
Sbjct: 366 GLRAIIEKIMQHVMYEIPSMKDVVKCTVTEDVVKNHSEPILTR 408
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLRLIQAADYDIDKAERGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPNQEMIQIDTTNILFIC 244
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|12053339|emb|CAB66856.1| hypothetical protein [Homo sapiens]
Length = 533
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/139 (73%), Positives = 118/139 (84%), Gaps = 1/139 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEP 158
+VP HSL+++ LV+ILTEP
Sbjct: 503 VVPLHSLDEKTLVQILTEP 521
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit ClpX [Chelativorans sp.
BNC1]
gi|123162493|sp|Q11J59.1|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans
sp. BNC1]
Length = 424
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT++ILF+ GA+ GL+++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTSSILFICGGAFAGLEKIISDRGKKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RRA L L+QVE DL+ FG+IPEFVGR PI
Sbjct: 272 ASVSSPEDRRAGEL----------------------LRQVEPEDLLKFGLIPEFVGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E LV+ILTEPKNA+++QYQ LF M+ V+LTF AL+AIAR A+E+KTGAR
Sbjct: 310 LATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAIARKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+ED V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVQEVVISEDVVAGSARPLYI 411
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ + +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTSSILFIC 248
>gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo
subsp. melo]
Length = 571
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 152/230 (66%), Gaps = 19/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RGE +Q+DT +ILF+ GA+ L++ IS R+ + LGFG
Sbjct: 318 LLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFG 377
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + D A V++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 378 APV--RANMRAGGVTD-----AMVTS--------SLLETVESSDLIAYGLIPEFVGRFPI 422
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV++LTEPKNA+ +QY+ +F M+ V L F+ AL+ IAR A+ K TGAR
Sbjct: 423 LVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGAR 482
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLKNTAPSYIRGIVF 245
GLR+I+E+LL+DSMYE+P G DI+ + ++ + + +P + I++
Sbjct: 483 GLRSILENLLMDSMYEIPDIRTGKDIIDAVVVDEESVGSDSPGFGAKILY 532
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 281 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 285 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
>gi|452991803|emb|CCQ96762.1| protein unfolding ATPase required for presentation of proteins to
proteases [Clostridium ultunense Esp]
Length = 426
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +QVDTTNILF+ GA++G+D++I R + K +GFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQVDTTNILFIVGGAFDGIDKIIQSRVDTKSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E G+ + +L LKQ++ DL+ +G+IPEFVGR P+
Sbjct: 267 A---EIKGKEDIRIGEL-------------------LKQIQPEDLLKYGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E LVRILTEPKNA+++QY+ LF MD VDL F EAL+A+A+ A+++KTGAR
Sbjct: 305 IVTLEELDEEALVRILTEPKNALVKQYKELFNMDGVDLEFDDEALKAVAKKAIDRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLD MY++P DI IT++T+ N P+ +
Sbjct: 365 GLRSIIEETLLDIMYDIPSREDIEKCLITKETIESNGEPTLV 406
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENIILKLIQAADYDIERAEKGIVYIDEIDKIARKTENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQVDTTNILFI 242
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIVYIDEIDKIARKTENPSIT--RDVSGEGVQQALLKI 210
>gi|449456973|ref|XP_004146223.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Cucumis sativus]
Length = 571
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 152/230 (66%), Gaps = 19/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RGE +Q+DT +ILF+ GA+ L++ IS R+ + LGFG
Sbjct: 318 LLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFG 377
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + D A V++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 378 APV--RANMRAGGVTD-----AMVTS--------SLLETVESSDLIAYGLIPEFVGRFPI 422
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV++LTEPKNA+ +QY+ +F M+ V L F+ +L+ IAR A+ K TGAR
Sbjct: 423 LVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENSLRLIARKAMSKNTGAR 482
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLKNTAPSYIRGIVF 245
GLR+I+E+LL+DSMYE+P G DI+ I ++ + + +P + I++
Sbjct: 483 GLRSILENLLMDSMYEIPDVRTGKDIIDAVIVDEESVGSDSPGFGAKILY 532
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 281 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 285 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
>gi|312128164|ref|YP_003993038.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Caldicellulosiruptor hydrothermalis 108]
gi|311778183|gb|ADQ07669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor hydrothermalis 108]
Length = 433
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 153/242 (63%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGF- 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++ K D L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 268 --------------------NAKVESKKEKKIGD-ILRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKAQKRPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 174 AERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKILEGTIASVPPQGG---RKH 228
Query: 337 PNTGYIWYRYPNTGYIW 353
P+ +I N +I
Sbjct: 229 PHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|146295916|ref|YP_001179687.1| ATP-dependent protease ATP-binding subunit ClpX
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|166214768|sp|A4XHW1.1|CLPX_CALS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|145409492|gb|ABP66496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 433
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 149/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I RR EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIERRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F EAL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K+ P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKVQRKPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIVYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|365873787|ref|ZP_09413320.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermanaerovibrio velox DSM 12556]
gi|363983874|gb|EHM10081.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermanaerovibrio velox DSM 12556]
Length = 429
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP K + + +QVDT NILF+ GA++GL+ +I+RR N+K +GFG
Sbjct: 220 LLRILEGTVANVPPKGGRKHPNQDFIQVDTKNILFICGGAFDGLEPIIARRTNKKVIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V++ +D ++++ K + A DLI +G IPEFVGR P+
Sbjct: 280 GD---------------------VASAKDLDKRNSLYKDLIADDLITYGFIPEFVGRLPV 318
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP SL++E L+RIL EP+NA+I+QYQ +F MDKV L F+ +A++AIAR ALE+KTGAR
Sbjct: 319 IVPLESLDEEALIRILQEPRNALIKQYQRIFEMDKVSLEFTQDAIRAIARKALERKTGAR 378
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSY 239
LR+IMES++LD MYE+P S + V I + VL +P +
Sbjct: 379 ALRSIMESIMLDLMYEMPSRASRVGKVLINDKVVLGEGSPEF 420
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +L++ + P G ++
Sbjct: 185 AERGIIYIDEIDKISRKSESPSIT--RDVSGEGVQQALLRILEGTVANVPPKGG---RKH 239
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 240 PNQDFIQVDTKNILFIC 256
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +L++
Sbjct: 187 RGIIYIDEIDKISRKSESPSIT--RDVSGEGVQQALLRI 223
>gi|402819274|ref|ZP_10868843.1| clpX protein [alpha proteobacterium IMCC14465]
gi|402511978|gb|EJW22238.1| clpX protein [alpha proteobacterium IMCC14465]
Length = 423
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 146/237 (61%), Gaps = 31/237 (13%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++ISRR E +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISRRGGETSIGFG 270
Query: 80 A----PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVG 135
A P T+S G LK +E DL+ FG+IPEFVG
Sbjct: 271 ANVAQPETKSTGD--------------------------LLKTLEPEDLLKFGLIPEFVG 304
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
R P++ L+++ LVRILTEPKNA+++QYQ LF M+ L F EALQAIAR A+E+K
Sbjct: 305 RLPVIATLEDLDEKALVRILTEPKNALVKQYQRLFDMEDTKLNFKDEALQAIARRAIERK 364
Query: 196 TGARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDK 251
TGARGLR++MES+LLDSM+E+P ++ + V I+ + V P YI +E D+
Sbjct: 365 TGARGLRSVMESMLLDSMFELPTTEGVEEVVISPEVVEGKAQPLYIYSEKTTEEADR 421
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALLKL 214
>gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 429
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 146/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP K + + +QVDT NILF+ GA++GL+ +I+RR +K +GFG
Sbjct: 220 LLRILEGTVSNVPPKGGRKHPNQDFIQVDTKNILFICGGAFDGLEPIIARRTRKKVIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+++ +D +++++ +++ A D I +G IPEFVGR P+
Sbjct: 280 GD---------------------IASAKDLEKRNSLYRELVADDFITYGFIPEFVGRLPV 318
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP SL++E LVRIL EPKNA+++QYQ +F MD+V+L F+PEA++AIAR A+E+KTGAR
Sbjct: 319 IVPLDSLDEEALVRILQEPKNALVRQYQRIFEMDRVNLEFTPEAIRAIARKAMERKTGAR 378
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSY 239
LR+IME ++LD MYE+P S + V I ED V AP +
Sbjct: 379 ALRSIMEGIMLDLMYEMPSKASQVGRVVIGEDVVNGQGAPVF 420
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 211 DSMYEVPGSDILMVHITED--TVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVG--G 266
D E+P S++L+V T T+L T ++ + F A+ L + G G
Sbjct: 114 DDQVELPKSNVLLVGPTGSGKTLLAQTLARLLK-VPF--------AIADATTLTEAGYVG 164
Query: 267 EGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLK 316
E V+ ++++ A + GI+++DE+DKI P I RDV GEGVQQ +L+
Sbjct: 165 EDVENILVRLLQAADYDVKAAERGIIYIDEIDKISRKSESPSIT--RDVSGEGVQQALLR 222
Query: 317 VSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ + P G ++PN +I N +I
Sbjct: 223 ILEGTVSNVPPKGG---RKHPNQDFIQVDTKNILFIC 256
>gi|312134618|ref|YP_004001956.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Caldicellulosiruptor owensensis OL]
gi|311774669|gb|ADQ04156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor owensensis OL]
Length = 433
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F EAL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K+ P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKVQKRPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|258646881|ref|ZP_05734350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
invisus DSM 15470]
gi|260404320|gb|EEW97867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
invisus DSM 15470]
Length = 412
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + EM+Q+DT+NILF+ GA+ G+D++I+RR +GFG
Sbjct: 209 LLKILEGTVASVPPQGGRKHPNQEMIQLDTSNILFICGGAFAGIDKVIARRTTRSTMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ D K+ L+ VE DL+ FG+IPEF+GR P+
Sbjct: 269 ADIKKA----------------------DEKDIAEVLQNVEPEDLLKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V H L +E L+RIL+EPKNA+I+QYQ L MD V+L F +A++AIA+ A+E+ TGAR
Sbjct: 307 IVALHPLKEEALIRILSEPKNALIRQYQKLLGMDNVELVFEGKAVRAIAKKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++ MYE+PG D++ +TEDTVLK P
Sbjct: 367 GLRAIIEKIMTKVMYEIPGMKDVVRCTVTEDTVLKGEPP 405
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQAADYDLERAQRGIVYIDEIDKIAKKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN I N +I
Sbjct: 211 KILEGTVASVPPQGG---RKHPNQEMIQLDTSNILFIC 245
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKIAKKSENPSIT--RDVSGEGVQQALLKI 212
>gi|345017120|ref|YP_004819473.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Thermoanaerobacter wiegelii Rt8.B1]
gi|344032463|gb|AEM78189.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 424
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITEDTVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEDTVLKKAPPTLV 406
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|227833710|ref|YP_002835417.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
aurimucosum ATCC 700975]
gi|262184717|ref|ZP_06044138.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
aurimucosum ATCC 700975]
gi|254763843|sp|C3PI25.1|CLPX_CORA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|227454726|gb|ACP33479.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
aurimucosum ATCC 700975]
Length = 431
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DTTNILF+ +GA+ GLD++IS R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTTNILFIVAGAFAGLDKVISERVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +D KE F QV DL+ FG+IPEF+GR P+
Sbjct: 283 AKLET----------------------KDEKESVDFFSQVRPEDLVKFGLIPEFIGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++L EPKN++++QYQ LF+MD +L F EAL+AIA LALE+KTGAR
Sbjct: 321 VATVDNLDRESLVKVLVEPKNSLVKQYQRLFSMDGAELHFEDEALEAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P DI VHIT+D V P ++
Sbjct: 381 GLRAIMEELLVPIMYDLPDREDIASVHITQDCVTDGGEPEFV 422
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 189 RLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
R+ E+ G G R + D E+ S+ILM+ T + +Y+
Sbjct: 99 RIKAEEAAGLEGRRKKAQ----DEEVEISKSNILMLGPT------GSGKTYL-AQTLARL 147
Query: 249 VDKIGAVPGIHQLRDVG--GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AV 296
+D A+ L + G GE V+ +LK+ A F GI+++DEVDKI
Sbjct: 148 LDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQHGIIYVDEVDKISRKSEN 207
Query: 297 PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P I RDV GEGVQQ +LK+ + P G ++PN +I N +I
Sbjct: 208 PSI--TRDVSGEGVQQALLKILEGTVAAIPPQGG---RKHPNQEFIQLDTTNILFI 258
>gi|356529352|ref|XP_003533258.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Glycine max]
Length = 713
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 166/268 (61%), Gaps = 22/268 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT NILF+ GA+ L++ IS R+ + +GFG
Sbjct: 458 LLKMLEGTIVNVPEKGARKNPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFG 517
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + D A S+ L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 518 APV--RANMRAVGITDSAVTSS-------------LLESVESADLIAYGLIPEFIGRFPI 562
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ L +LTEPKNA+ +QY+ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 563 LVSLSALTEDQLTMVLTEPKNALGKQYKKLFSMNNVKLHFTENALRLIAKKAMAKNTGAR 622
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDK--I 252
GLRA++ES+L ++M+E+P GSD + V I E++V TAP I+ D K +
Sbjct: 623 GLRALLESILTEAMFEIPDIKTGSDRVDAVVIDEESVGSLTAPGCGGKILHGDGALKQYL 682
Query: 253 GAVPGIHQLRDVGGEGVQQGMLKVSALA 280
+ DVG +Q+G L++S+ A
Sbjct: 683 AKMKDSAVNVDVGESDLQEGDLELSSRA 710
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 421 AAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 461
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 425 QGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 461
>gi|302871326|ref|YP_003839962.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Caldicellulosiruptor obsidiansis OB47]
gi|302574185|gb|ADL41976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor obsidiansis OB47]
Length = 433
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 149/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K+ P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKVQKKPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|419840039|ref|ZP_14363437.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
haemolyticus HK386]
gi|386908564|gb|EIJ73256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
haemolyticus HK386]
Length = 413
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 148/220 (67%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +E+ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDEEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF+++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFSLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|356561766|ref|XP_003549149.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Glycine max]
Length = 711
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/270 (42%), Positives = 170/270 (62%), Gaps = 26/270 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT NILF+ GA+ L++ IS R+ + +GFG
Sbjct: 456 LLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFG 515
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + D A S+ L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 516 APV--RANMRAGGITDSAVTSS-------------LLESVESADLIAYGLIPEFIGRFPI 560
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ L+ +LTEPKNA+ +QY+ LF+M+ V L F+ +AL+ IA+ A+ K TGAR
Sbjct: 561 LVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGAR 620
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTVLKNTAP----SYIRGIVFLDEVD 250
GLRA++E++L ++M+E+P GSD + V I E++V TAP +RG L++
Sbjct: 621 GLRALLENILTEAMFEIPDIKTGSDRVDAVVIDEESVGSLTAPGCGGKILRGDGALEQY- 679
Query: 251 KIGAVPGIHQLRDVGGEGVQQGMLKVSALA 280
+ + DVG +Q+G L++S+ A
Sbjct: 680 -LAKMKDSAVNVDVGESDLQEGDLELSSRA 708
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 419 AAAQQGIIYIDEVDKITKKSKSLNISRDVSGEGVQQALLKM 459
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 423 QGIIYIDEVDKITKKSKSLNISRDVSGEGVQQALLKM 459
>gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding protein ClpX [Mesorhizobium loti
MAFF303099]
gi|21263478|sp|Q982V5.1|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium
loti MAFF303099]
Length = 424
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + D F +QVE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------TVASPEDRRTGDIF-RQVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ VDLTF AL AIA+ A+E+KTGAR
Sbjct: 310 LATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVREVVISEEVVTGSARPLYI 411
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|167038049|ref|YP_001665627.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116458|ref|YP_004186617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|326391009|ref|ZP_08212558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter ethanolicus JW 200]
gi|392940443|ref|ZP_10306087.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermoanaerobacter siderophilus SR4]
gi|238687678|sp|B0KBA3.1|CLPX_THEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|166856883|gb|ABY95291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929549|gb|ADV80234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|325992954|gb|EGD51397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter ethanolicus JW 200]
gi|392292193|gb|EIW00637.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermoanaerobacter siderophilus SR4]
Length = 424
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|167040914|ref|YP_001663899.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
sp. X514]
gi|300914950|ref|ZP_07132266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter sp. X561]
gi|307723816|ref|YP_003903567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter sp. X513]
gi|238687634|sp|B0K532.1|CLPX_THEPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|166855154|gb|ABY93563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter sp. X514]
gi|300889885|gb|EFK85031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter sp. X561]
gi|307580877|gb|ADN54276.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter sp. X513]
Length = 424
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|256752436|ref|ZP_05493295.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter ethanolicus CCSD1]
gi|256748705|gb|EEU61750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter ethanolicus CCSD1]
Length = 424
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|255557853|ref|XP_002519956.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
gi|223541002|gb|EEF42560.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
Length = 698
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 150/217 (69%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 441 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 500
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + + AAV++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 501 APV--RANMRAGGVTN-----AAVTS--------SLLESVESADLIAYGLIPEFIGRFPI 545
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ LVR+LTEPKNA+ +QY+ LF+M+KV L F+ +AL+ IA+ A+ K TGAR
Sbjct: 546 LVSLSALTEDQLVRVLTEPKNALGKQYKKLFSMNKVKLHFTEKALRLIAKKAMAKNTGAR 605
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTV 231
GLRAI+ES L ++MYE+P GSD + V + E+++
Sbjct: 606 GLRAILESTLTEAMYEIPDVKTGSDRVDAVIVDEESI 642
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ ++A F GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 385 GEDVESILYKLLSVAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 444
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 408 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 444
>gi|222528716|ref|YP_002572598.1| ATP-dependent protease ATP-binding subunit ClpX
[Caldicellulosiruptor bescii DSM 6725]
gi|254763830|sp|B9MQ33.1|CLPX_ANATD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|222455563|gb|ACM59825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor bescii DSM 6725]
Length = 433
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 148/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKAQKRPKL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|304316360|ref|YP_003851505.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|433654492|ref|YP_007298200.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|302777862|gb|ADL68421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|433292681|gb|AGB18503.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 424
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTNILF+ GA++G++++I R +K LGFG
Sbjct: 207 LLKILEGTVANVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+E ++ + ++ LK + DL+ FG+IPEF+GR PI
Sbjct: 267 ---SEVQSKQEKKIGEI-------------------LKNIMPEDLLKFGLIPEFIGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL+++ L+RILTEPKNA+ +QY+ LF +D V L F +AL IA+ A+++KTGAR
Sbjct: 305 VVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQKAIDRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E L+LD MYE+P SD I ITEDTVL N P+ +
Sbjct: 365 GLRSILEELMLDVMYEIPSSDNIEKCIITEDTVLNNAPPTIV 406
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAERGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVANVPPQGG---RKHPHQEFIQIDTTNILFI 242
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|374295112|ref|YP_005045303.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Clostridium
clariflavum DSM 19732]
gi|359824606|gb|AEV67379.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Clostridium
clariflavum DSM 19732]
Length = 431
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKIIQNRIGKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ES ++ + ++ LK + +DL+ FG+IPEFVGR PI
Sbjct: 268 A-NIES--KKKMDVGEI-------------------LKHIYPQDLLKFGLIPEFVGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V HSL++ L++ILTEPKNA+++QY+ LF MD V+L F AL+AIA A+E+ TGAR
Sbjct: 306 MVSLHSLDKAALIQILTEPKNALVKQYKKLFEMDDVELEFEEGALEAIAEKAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P ++ +T DTVLKNT P I
Sbjct: 366 GLRAIIEEIMLDVMYEIPSMGNVEKCIVTRDTVLKNTPPEII 407
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIIYIDEVDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEVDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|417844174|ref|ZP_12490235.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21127]
gi|341947559|gb|EGT74206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21127]
Length = 413
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +E+ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDEEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFRLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|373467006|ref|ZP_09558312.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
sp. oral taxon 851 str. F0397]
gi|371759512|gb|EHO48239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
sp. oral taxon 851 str. F0397]
Length = 413
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +E+ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDEEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFGLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|342905186|ref|ZP_08726975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21621]
gi|417839807|ref|ZP_12485974.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M19107]
gi|341951682|gb|EGT78242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M19107]
gi|341951688|gb|EGT78247.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21621]
Length = 413
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +E+ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDEEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFGLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|289577855|ref|YP_003476482.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermoanaerobacter italicus Ab9]
gi|289527568|gb|ADD01920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter italicus Ab9]
Length = 424
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ GL+++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGLEKIIESRIGKKTLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
++ R+ ++ ++ L + DL+ FGMIPEF+GR PI
Sbjct: 267 ---SDVQSRKEKNIGEI-------------------LSHIMPEDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E LVRILTEPKNA+++QY+ LF +D V L F +AL IA ALE+KTGAR
Sbjct: 305 VVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIADKALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|417842394|ref|ZP_12488485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M19501]
gi|341947266|gb|EGT73934.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M19501]
Length = 413
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +E+ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDEEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFGLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|312622970|ref|YP_004024583.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203437|gb|ADQ46764.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor kronotskyensis 2002]
Length = 433
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 148/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKAQKRPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|302390302|ref|YP_003826123.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermosediminibacter oceani DSM 16646]
gi|302200930|gb|ADL08500.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermosediminibacter oceani DSM 16646]
Length = 421
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I+ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIANRIGKKSIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + ++ +L L Q+ DL+ FGMIPEFVGR PI
Sbjct: 268 A---EIRSKEEKNVGEL-------------------LSQIMPEDLLKFGMIPEFVGRVPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ L+RIL EPKNA+++QYQ LF MD V L F+ EALQ IA+ AL +KTGAR
Sbjct: 306 IVTLDALDEQALIRILKEPKNALVKQYQKLFEMDNVQLEFTDEALQVIAQEALNRKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E +++D MYE+P SDI +T++ VLK P
Sbjct: 366 GLRAILEEVMMDVMYEIPSRSDITKCVVTKEVVLKREEP 404
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|324510952|gb|ADY44570.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
[Ascaris suum]
Length = 528
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 144/221 (65%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT++ V P L G V VDT+N+LFVASGA+N LD++I+RR + K +GFG
Sbjct: 293 LLKLVEGTVIKV---KGPPSL-GTKVDVDTSNVLFVASGAFNNLDKIIARRLHRKIVGFG 348
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE----KDAFLKQVEARDLIDFGMIPEFVG 135
A D+ + A +D K+ +D L Q + DLI FGM+PE +G
Sbjct: 349 A--------------DINTEYAECLQNKDEKKVSKCRDQLLAQTDQTDLISFGMVPELIG 394
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP+ VPFH L++ELLVRI+ EP+N++I Q + F +DKV L F+ AL+ IAR+A++KK
Sbjct: 395 RFPVYVPFHGLDEELLVRIMQEPRNSIISQAKQQFLLDKVRLHFTDGALKEIARIAVQKK 454
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
TGAR LR I+E++LLD+ YEVPG+ + V I E+ V T+
Sbjct: 455 TGARALRMIVENVLLDAKYEVPGTGVDTVIIDENVVKGKTS 495
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
RGIVFLDE DKI + H RDV G GVQQ +LK+
Sbjct: 259 RGIVFLDEFDKISSSTDFHSHGFRDVSGRGVQQALLKL 296
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 283 GIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 317
GIVFLDE DKI + H RDV G GVQQ +LK+
Sbjct: 260 GIVFLDEFDKISSSTDFHSHGFRDVSGRGVQQALLKL 296
>gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[butyrate-producing bacterium SS3/4]
Length = 433
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL+R+I R +GFG
Sbjct: 210 LLKILEGTVASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLERIIESRLETSSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + N + LKQ +DL FG+IPEFVGR P+
Sbjct: 270 AKIVDKK----------------------NTDISKLLKQAMPQDLTKFGLIPEFVGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+++QYQ LF +D V L F+P+A+ IA +A+E+KTGAR
Sbjct: 308 MVSLDLLDEDSLVRILTEPKNALVKQYQKLFELDDVKLEFTPDAVHEIAHMAVERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIMES+++D+MYEVP S++ + +T+D V P +
Sbjct: 368 GLRAIMESVMMDTMYEVPSDSNVGICTVTKDAVDGKEKPEVV 409
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKV-------SALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLIQAADNDVSRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P I N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPQQELIQIDTTNILFIC 246
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|242062022|ref|XP_002452300.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
gi|241932131|gb|EES05276.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
Length = 640
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 25/259 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 392 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 451
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA ++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 452 APV--RANMRAGGIS-----SAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 496
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 497 LVSLAALNEDQLVQVLTEPKNALGKQFKKLFSMNNVKLHFTDGALRIIAKKAMSKNTGAR 556
Query: 200 GLRAIMESLLLDSMYEVPGS-----DILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLR I+E++L+DSMYE+P + I V + ED V P I++ D GA
Sbjct: 557 GLRTILETILMDSMYEIPDARSGEKRIDAVVVDEDAVGSVDQPGCGAKILYGD-----GA 611
Query: 255 VPGIHQLRDVGGEGVQQGM 273
+ V G+GV M
Sbjct: 612 LDQYLSQIKVSGDGVASEM 630
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 336 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 395
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 359 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 395
>gi|226532215|ref|NP_001140773.1| uncharacterized protein LOC100272848 [Zea mays]
gi|194701024|gb|ACF84596.1| unknown [Zea mays]
Length = 346
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 25/259 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 94 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 153
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 154 APVR-------ANMRVGGTSSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 198
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA A+ K TGAR
Sbjct: 199 LVSLTALNEDQLVQVLTEPKNALGKQFKKLFSMNDVKLHFTDGALRIIAEKAMSKNTGAR 258
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLR I+E++L+DSMYE+P + I V + ED V P Y I++ D GA
Sbjct: 259 GLRTILENILMDSMYEIPDAKSGEKRIDAVVVDEDAVGSVDQPGYGAKILYGD-----GA 313
Query: 255 VPGIHQLRDVGGEGVQQGM 273
+ V G+GV M
Sbjct: 314 LDQYLSHIKVAGDGVASEM 332
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 38 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 61 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
>gi|407974426|ref|ZP_11155335.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
indicus C115]
gi|407430115|gb|EKF42790.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
indicus C115]
Length = 424
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + + F +QVE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------TVASPEDRRTGELF-RQVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+IL+EPKNA+++QYQ LF M+ V+LTF AL AIAR A+E+KTGAR
Sbjct: 310 LATLEDLDEAALVQILSEPKNALVKQYQRLFEMENVELTFHENALAAIARKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+++ V N P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVQEVVISDEVVAGNARPLYI 411
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|407776939|ref|ZP_11124210.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
pacificus pht-3B]
gi|407301104|gb|EKF20225.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
pacificus pht-3B]
Length = 424
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GF
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V++ ED + + F +QVE DL+ FG+IPEFVGR PI
Sbjct: 271 --------------------AANVASPEDRQTGELF-RQVEPEDLLKFGLIPEFVGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+ILTEPKNA+++QYQ LF M+ V+LTF AL AIAR A+E+KTGAR
Sbjct: 310 LATLEDLDEPALVQILTEPKNALVKQYQRLFDMENVELTFHENALAAIARKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IMES+LLD+M+E+P + + V I+++ V N P YI
Sbjct: 370 GLRSIMESILLDTMFELPALEGVQEVVISDEVVAGNARPLYI 411
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|413937330|gb|AFW71881.1| hypothetical protein ZEAMMB73_870207 [Zea mays]
Length = 643
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 25/259 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 391 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 450
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 451 APVR-------ANMRVGGTSSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 495
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA A+ K TGAR
Sbjct: 496 LVSLTALNEDQLVQVLTEPKNALGKQFKKLFSMNDVKLHFTDGALRIIAEKAMSKNTGAR 555
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLR I+E++L+DSMYE+P + I V + ED V P Y I++ D GA
Sbjct: 556 GLRTILENILMDSMYEIPDAKSGEKRIDAVVVDEDAVGSVDQPGYGAKILYGD-----GA 610
Query: 255 VPGIHQLRDVGGEGVQQGM 273
+ V G+GV M
Sbjct: 611 LDQYLSHIKVAGDGVASEM 629
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 335 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 394
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 358 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 394
>gi|225848211|ref|YP_002728374.1| ATP-dependent protease ATP-binding subunit ClpX
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643885|gb|ACN98935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 405
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ GL+ +I +R +K +GFG
Sbjct: 203 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFILGGAFVGLEDIIRQRLGKKAIGFG 262
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + KE+ L+QV+ DLI FG+IPEF+GR P+
Sbjct: 263 AEI------------------------KSKKEEGDLLEQVQPEDLIKFGLIPEFLGRIPV 298
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++++LVR+LTEPKNA+I+QYQ L +D +DL F+ +AL+ IAR A+++KTGAR
Sbjct: 299 IATLKELDEDMLVRVLTEPKNALIKQYQALLAVDGIDLEFTEDALREIAREAIKRKTGAR 358
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE P L V I +D VLKN P ++
Sbjct: 359 GLRAIIEDIMLDIMYEAPNQKTLKKVVIDKDVVLKNKPPIFV 400
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYP 337
A GIV++DEVDKI G + RDV GEGVQQ +LK+ + P G ++P
Sbjct: 167 AEKGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGG---RKHP 223
Query: 338 NTGYIWYRYPNTGYIW 353
+ +I N +I
Sbjct: 224 HQEFIQIDTTNILFIL 239
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
+GIV++DEVDKI G + RDV GEGVQQ +LK+
Sbjct: 169 KGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKI 206
>gi|413937331|gb|AFW71882.1| hypothetical protein ZEAMMB73_870207 [Zea mays]
Length = 642
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 159/259 (61%), Gaps = 25/259 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 390 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 449
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 450 APVR-------ANMRVGGTSSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 494
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA A+ K TGAR
Sbjct: 495 LVSLTALNEDQLVQVLTEPKNALGKQFKKLFSMNDVKLHFTDGALRIIAEKAMSKNTGAR 554
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLR I+E++L+DSMYE+P + I V + ED V P Y I++ D GA
Sbjct: 555 GLRTILENILMDSMYEIPDAKSGEKRIDAVVVDEDAVGSVDQPGYGAKILYGD-----GA 609
Query: 255 VPGIHQLRDVGGEGVQQGM 273
+ V G+GV M
Sbjct: 610 LDQYLSHIKVAGDGVASEM 628
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 334 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 393
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 357 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 393
>gi|390449293|ref|ZP_10234902.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
aquibiodomus RA22]
gi|389664398|gb|EIM75893.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratireductor
aquibiodomus RA22]
Length = 424
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDRIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + F +QVE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------TVASPEDRPTGELF-RQVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+IL+EPKNA+++QYQ LF M+ V+LTF AL AIAR A+E+KTGAR
Sbjct: 310 LATLEDLDEAALVQILSEPKNALVKQYQRLFDMENVELTFHENALAAIARKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+++ V N P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVQEVVISDEVVAGNARPLYI 411
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|410582588|ref|ZP_11319694.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermaerobacter subterraneus DSM 13965]
gi|410505408|gb|EKP94917.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermaerobacter subterraneus DSM 13965]
Length = 419
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 142/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA+ GLD++I+ R + +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGLDKIIASRIGRRVMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ ++ D+ L+ + DL+ FG+IPEFVGR P+
Sbjct: 268 A---EVRSKQETNVGDI-------------------LRHIMPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+++ LVRILTEPKNA+++QYQ L +D V+L F PEAL+AIA+ AL++ TGAR
Sbjct: 306 IATLDALDEDALVRILTEPKNALVKQYQKLLALDNVELEFEPEALRAIAQEALKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E L+LD MYE+PG D+ V +TE+TV + P
Sbjct: 366 GLRAIVEELMLDLMYELPGRDDVARVVVTEETVRQRREP 404
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAERGIVYIDEIDKIARKAENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIVYIDEIDKIARKAENPSIT--RDVSGEGVQQALLKI 211
>gi|312792982|ref|YP_004025905.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180122|gb|ADQ40292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 433
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 28/238 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVP 256
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K P
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKAQKKP 419
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSIT--RDVSGEGVQQALLKI 212
>gi|420238691|ref|ZP_14743074.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF080]
gi|398085331|gb|EJL75991.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF080]
Length = 425
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ASVKSAEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ VDLTF +AL+ IA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVDLTFHEDALREIAKRAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I++D V N P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDDVVRGNARPLYI 412
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|333897650|ref|YP_004471524.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermoanaerobacterium xylanolyticum LX-11]
gi|390934516|ref|YP_006392021.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|333112915|gb|AEF17852.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Thermoanaerobacterium xylanolyticum LX-11]
gi|389570017|gb|AFK86422.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 424
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTNILF+ GA++G++++I R +K LGFG
Sbjct: 207 LLKILEGTVANVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+E ++ + ++ LK + DL+ FG+IPEF+GR PI
Sbjct: 267 ---SEIQSKQEKKIGEI-------------------LKNIMPEDLLKFGLIPEFIGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL+++ L+RILTEPKNA+ +QY+ LF +D V L F +AL IA+ A+++KTGAR
Sbjct: 305 VVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQKAIDRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E L+LD MYE+P SD I ITE+TVL N P+ +
Sbjct: 365 GLRSILEELMLDVMYEIPSSDNIEKCIITEETVLNNAPPTIV 406
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVANVPPQGG---RKHPHQEFIQIDTTNILFI 242
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|337269329|ref|YP_004613384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
opportunistum WSM2075]
gi|433775721|ref|YP_007306188.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Mesorhizobium australicum WSM2073]
gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|336029639|gb|AEH89290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
opportunistum WSM2075]
gi|433667736|gb|AGB46812.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Mesorhizobium australicum WSM2073]
Length = 424
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + D F + VE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------VVASPEDRRTGDVF-RLVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ VDLTF AL AIA+ A+E+KTGAR
Sbjct: 310 LATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVREVVISEEVVTGSARPLYI 411
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|297544143|ref|YP_003676445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296841918|gb|ADH60434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 424
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ GL+++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGLEKIIESRIGKKTLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
++ R+ ++ ++ L + DL+ FGMIPEF+GR PI
Sbjct: 267 ---SDVQSRKEKNIGEI-------------------LSHIMPEDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E LVRILTEPKNA+++QY+ LF +D V L F +AL IA ALE+KTGAR
Sbjct: 305 VVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIADKALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P S+ I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSENIEKCIITEETVLKKAPPTLV 406
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|125975223|ref|YP_001039133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
thermocellum ATCC 27405]
gi|256003115|ref|ZP_05428107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum DSM 2360]
gi|281419197|ref|ZP_06250213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum JW20]
gi|385777707|ref|YP_005686872.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
thermocellum DSM 1313]
gi|419722740|ref|ZP_14249877.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
thermocellum AD2]
gi|419726241|ref|ZP_14253264.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
thermocellum YS]
gi|166214772|sp|A3DJ11.1|CLPX_CLOTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|125715448|gb|ABN53940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum ATCC 27405]
gi|255992806|gb|EEU02896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum DSM 2360]
gi|281407063|gb|EFB37325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum JW20]
gi|316939387|gb|ADU73421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
thermocellum DSM 1313]
gi|380770293|gb|EIC04190.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
thermocellum YS]
gi|380781120|gb|EIC10781.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
thermocellum AD2]
Length = 431
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKIIQNRIGKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ES + A++ ++ LK + +DL+ FG+IPEFVGR P+
Sbjct: 268 A-KIESP--KKANVGEI-------------------LKNILPQDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V HSL++E LV+ILTEPKNA+++QYQ LF MD V L F EA++AIA A+E+ TGAR
Sbjct: 306 IVTLHSLDREALVKILTEPKNALVKQYQKLFEMDDVILEFEKEAIEAIADKAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MY++P + + IT+DTV K P+ I
Sbjct: 366 GLRAILEEIMLDVMYDIPSQENVEKCIITKDTVEKMVPPTVI 407
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|417846494|ref|ZP_12492496.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21639]
gi|341952171|gb|EGT78708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
haemolyticus M21639]
Length = 413
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ ++P + + + EMV++DT+ ILF+ GA+ GLD++IS+R + +GF
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIISKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
SA V +++ K +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------SAKVEKDKEEKSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LV+ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MISPLSELDEEALVQILTQPKNALTKQYQALFGLENVELEFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ NTAP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSIENLRKVVVDESTIVDNTAP 407
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|350425874|ref|XP_003494260.1| PREDICTED: hypothetical protein LOC100749102 [Bombus impatiens]
Length = 2402
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 146/226 (64%), Gaps = 23/226 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP K + + E +QVDT+ ILF+ GA+ GLD++IS+R +GF
Sbjct: 826 LLKLIEGTVAAVPPKGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISQRVATNTGIGF 885
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V +E+ N + L Q+E DLI FG+IPEF+GR P
Sbjct: 886 GA---------------------EVKSEKQNASESDLLAQIEPEDLIKFGLIPEFIGRLP 924
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L+++ L++ILTEPKNA+ +QYQ LF ++ +L FS EAL+AIA+ A+++KTGA
Sbjct: 925 VVATLSELDEKALIQILTEPKNALTKQYQALFNLENTELEFSQEALEAIAKKAMKRKTGA 984
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGI 243
RGLR+I+E++LLD+MY++P D+ V +T+DTV +N P+ I+ I
Sbjct: 985 RGLRSIVENILLDTMYDLPSFDDVAKVVVTKDTVDENLPPNLIKTI 1030
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 793 RGIIYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 829
>gi|344996807|ref|YP_004799150.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965026|gb|AEM74173.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Caldicellulosiruptor lactoaceticus 6A]
Length = 432
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 268 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 306 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAIME ++LD M+E+P +D I V IT+ VLK P I
Sbjct: 366 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKPIVI 407
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 211
>gi|282856772|ref|ZP_06266033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Pyramidobacter piscolens W5455]
gi|282585395|gb|EFB90702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Pyramidobacter piscolens W5455]
Length = 432
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 146/240 (60%), Gaps = 26/240 (10%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL +LEGT+ N+P K + + E +QV+T NILF+ GA++GL+
Sbjct: 207 TSITRDVSGEGVQQALLKILEGTVSNIPPKGGRKHPQQEFIQVNTANILFICGGAFDGLE 266
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
++ RR N+K +GF + D+ N +AA ++ L+QVE DL
Sbjct: 267 NIVGRRVNKKVIGFDS--------------DIRNGTAA--------DRYDLLRQVEPEDL 304
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+ FG IPE VGR P+LVP SL+ + LVR+LTEPKN++++QYQ F M+ V+L + PEA+
Sbjct: 305 VSFGFIPELVGRLPLLVPLQSLDADALVRVLTEPKNSLVRQYQKNFEMENVELDYQPEAI 364
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSD----ILMVHITEDTVLKNTAPSYI 240
+AIA A K TGARGLRAIME+L+L+ MYEVP S+ I + IT + V P YI
Sbjct: 365 RAIAEKAASKGTGARGLRAIMENLMLNLMYEVPSSNTKGQIKKIVITPEYVAGTGQPEYI 424
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 278 ALAAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A A GIV++DE+DKI + RDV GEGVQQ +LK+ + P G ++
Sbjct: 185 AAAERGIVYIDEIDKIARKSESTSITRDVSGEGVQQALLKILEGTVSNIPPKGG---RKH 241
Query: 337 PNTGYIWYRYPNTGYIW 353
P +I N +I
Sbjct: 242 PQQEFIQVNTANILFIC 258
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 189 RGIVYIDEIDKIARKSESTSITRDVSGEGVQQALLKI 225
>gi|357025388|ref|ZP_09087512.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium
amorphae CCNWGS0123]
gi|355542632|gb|EHH11784.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium
amorphae CCNWGS0123]
Length = 424
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + D F + VE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------IVASPEDRRTGDVF-RLVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ VDLTF AL AIA+ A+E+KTGAR
Sbjct: 310 LATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVREVVISEEVVTGSARPLYI 411
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|18423503|ref|NP_568792.1| CLP protease regulatory subunit X [Arabidopsis thaliana]
gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease regulatory subunit CLPX [Arabidopsis
thaliana]
gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
[Arabidopsis thaliana]
gi|23296603|gb|AAN13130.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
[Arabidopsis thaliana]
gi|332008960|gb|AED96343.1| CLP protease regulatory subunit X [Arabidopsis thaliana]
Length = 579
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 148/218 (67%), Gaps = 19/218 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ +++ IS R+++ +GFG
Sbjct: 322 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFG 381
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + + AAV++ ++ VE+ DLI +G+IPEFVGRFP+
Sbjct: 382 APV--RANMRAGGVTN-----AAVASN--------LMETVESSDLIAYGLIPEFVGRFPV 426
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + L+++LTEPKNA+ +QY+ ++ M+ V L F+ AL+ IAR A+ K TGAR
Sbjct: 427 LVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTESALRLIARKAITKNTGAR 486
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLK 233
GLRA++ES+L+DSMYE+P GSD++ + ++ ++
Sbjct: 487 GLRALLESILMDSMYEIPDEGTGSDMIEAVVVDEEAVE 524
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 285 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 325
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 289 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 325
>gi|413922727|gb|AFW62659.1| hypothetical protein ZEAMMB73_067276 [Zea mays]
gi|413922728|gb|AFW62660.1| hypothetical protein ZEAMMB73_067276 [Zea mays]
gi|413922729|gb|AFW62661.1| hypothetical protein ZEAMMB73_067276 [Zea mays]
gi|413922730|gb|AFW62662.1| hypothetical protein ZEAMMB73_067276 [Zea mays]
Length = 346
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 150/230 (65%), Gaps = 20/230 (8%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++
Sbjct: 81 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKT 140
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP A RA ++ SA V++ + L+ VE+ DLI
Sbjct: 141 ISERRQDSSIGFGAPV--RANMRAGGIS-----SAQVTS--------SLLESVESGDLIA 185
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GRFPILV +LN++ LV++L EPKNA+ +Q++ LF+M+ V L F+ AL+
Sbjct: 186 YGLIPEFIGRFPILVSLAALNEDQLVQVLIEPKNALGKQFKKLFSMNNVKLHFTDGALRI 245
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTV 231
IA+ A+ K TGARGLR I+E++L+DSMYE+P + I V + ED V
Sbjct: 246 IAKKAMSKNTGARGLRTILENILMDSMYEIPDAKSGEKRIDAVVVDEDAV 295
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 38 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 61 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
>gi|405972763|gb|EKC37513.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Crassostrea gigas]
Length = 492
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 10/222 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EG ++ VP+ + K + + VDTTNILF+ SGA++GL +I RR N K GF
Sbjct: 249 LLKMMEGAVIKVPDLSGSGK---KTIDVDTTNILFIFSGAFSGLTNIIQRRTNIKPFGFT 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E + A+ D +QS + EKD L+ VE DL++FGMIPEF+GR P+
Sbjct: 306 SETPED--KEGANATDTIHQSDTT-----DHEKDEILRAVEVDDLVNFGMIPEFIGRIPV 358
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
F ++ E+L++IL EP+NA+I QY+ L MD L F EAL A+A+ A E TGAR
Sbjct: 359 FAVFENMTTEMLIKILKEPRNALIPQYETLLEMDGAKLKFEEEALVAVAQKAKESGTGAR 418
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
LR+ +E++LL+ MYE P SDI + IT+DTV T P Y++
Sbjct: 419 ALRSRLENILLEPMYEAPNSDIEEIIITKDTVENKTPPVYVQ 460
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKI + G RDVGGEGVQQ +LK+
Sbjct: 217 QGIVFLDEVDKISSKKGGQFQRDVGGEGVQQSLLKM 252
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%)
Query: 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GIVFLDEVDKI + G RDVGGEGVQQ +LK+
Sbjct: 218 GIVFLDEVDKISSKKGGQFQRDVGGEGVQQSLLKM 252
>gi|255551247|ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
gi|223544165|gb|EEF45689.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
Length = 565
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 147/217 (67%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 310 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 369
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R S+ SAAV++ + L+ VE+ DLI +G+IPEFVGRFP+
Sbjct: 370 APV--RANMRMGSVT-----SAAVTS--------SLLETVESGDLISYGLIPEFVGRFPV 414
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV++LTEPKNA+ +QY+ +F M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 415 LVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTENALRLIAKKAITKNTGAR 474
Query: 200 GLRAIMESLLLDSMYEVP----GSDIL-MVHITEDTV 231
GLRAI+E++L+D+MYE+P G DI+ V + E+ V
Sbjct: 475 GLRAILENILMDAMYEIPDVKTGEDIIDAVVVDEEAV 511
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 273 AAAQQGIVYIDEVDKITKKAESVNISRDVSGEGVQQALLKM 313
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 277 QGIVYIDEVDKITKKAESVNISRDVSGEGVQQALLKM 313
>gi|357149618|ref|XP_003575174.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 1 [Brachypodium distachyon]
Length = 640
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 150/233 (64%), Gaps = 20/233 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 388 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 447
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP AS+ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 448 APVR-------ASMRTGGISSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 492
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 493 LVSLAALNEDQLVQVLTEPKNALGKQFRKLFSMNNVKLHFTDSALRIIAKKAMCKNTGAR 552
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLD 247
GLR I+E++L+DSMYE+P + I V + ED V P I++ D
Sbjct: 553 GLRTILENILMDSMYEIPDTKSGEKRIDAVVVDEDAVGSVDRPGCGAKILYGD 605
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 332 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 391
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 355 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 391
>gi|319941576|ref|ZP_08015902.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
wadsworthensis 3_1_45B]
gi|319804946|gb|EFW01788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
wadsworthensis 3_1_45B]
Length = 456
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI ++P K + M++VDT+ ILF+ GA++G++R++ R + +GF
Sbjct: 231 LLKLVEGTIASMPVKGGRKNPGKAMMEVDTSQILFICGGAFDGMERIVRHRTEKSEIGF- 289
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S V ++D+ D F +Q+E DL+ +G+IPE VGR P+
Sbjct: 290 --------------------SGTVVGKKDHNLTDVF-RQIETGDLVKYGLIPELVGRLPV 328
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ LN+E L+ ILT+PKNA+++QYQ+LF M+ VD+ F+PEAL+AIA A+E+KTGAR
Sbjct: 329 ITVLEELNEEALIEILTKPKNAIVRQYQVLFAMEDVDIEFTPEALKAIAHQAIERKTGAR 388
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E+LLLD+M+E+P +D+ V +TE V P Y+
Sbjct: 389 GLRSIIEALLLDTMFEIPSRTDVAKVIVTEAVVTAKAKPEYV 430
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GI++LDE+DKI P I RDV GEGVQQ +LK+
Sbjct: 198 KGIIYLDEIDKIARKSENPSIT--RDVSGEGVQQALLKL 234
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 317
A GI++LDE+DKI P I RDV GEGVQQ +LK+
Sbjct: 196 AQKGIIYLDEIDKIARKSENPSIT--RDVSGEGVQQALLKL 234
>gi|333977878|ref|YP_004515823.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333821359|gb|AEG14022.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 416
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 142/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R +K LGFG
Sbjct: 205 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIQNRIGKKGLGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E RR + ++ L Q+ DL+ +G+IPEFVGR PI
Sbjct: 265 A---EIQSRRDQKIGEI-------------------LSQILPEDLLKYGLIPEFVGRLPI 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L+RILTEPKNA+++QY+ LF +D V L F P+AL+ +A+ AL++ TGAR
Sbjct: 303 IVTLDALDEEALIRILTEPKNALVKQYEKLFELDGVSLEFHPDALRTVAQEALKRNTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++LD MYE+P DI V IT++T+LK P
Sbjct: 363 GLRAILEDIMLDVMYEIPSREDIARVIITKETILKKEKP 401
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|20807120|ref|NP_622291.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
tengcongensis MB4]
gi|254479267|ref|ZP_05092610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Carboxydibrachium pacificum DSM 12653]
gi|23813862|sp|Q8RC24.1|CLPX_THETN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|20515614|gb|AAM23895.1| ATP-dependent protease Clp, ATPase subunit [Thermoanaerobacter
tengcongensis MB4]
gi|214034805|gb|EEB75536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Carboxydibrachium pacificum DSM 12653]
Length = 425
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 136/224 (60%), Gaps = 27/224 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G+D++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIDKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A + KEKD LK + DL+ FGMIPEF+GR
Sbjct: 267 AEV------------------------QSKKEKDVGEILKHIMPEDLLKFGMIPEFIGRV 302
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PI+V L ++ LVRILTEPKNA+++QY+ LF MD V L F +AL IA +ALE+ TG
Sbjct: 303 PIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEKKALDLIAEMALERGTG 362
Query: 198 ARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
ARGLRAI+E ++LD MYE+P + I ITE+TV K P+ +
Sbjct: 363 ARGLRAILEDIMLDVMYEIPSDETIEKCIITEETVRKIAPPTLV 406
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLRLIQAADYDIERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|407785098|ref|ZP_11132246.1| ATP-dependent protease ATP-binding subunit ClpX [Celeribacter
baekdonensis B30]
gi|407203130|gb|EKE73117.1| ATP-dependent protease ATP-binding subunit ClpX [Celeribacter
baekdonensis B30]
Length = 421
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRNKGTAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ N +++K KQ+E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVKN--------DEDKGVGEMFKQLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ LTF+ +AL +IA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALVTILTQPKNALVKQYQRLFELENAKLTFTEDALTSIAKRAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG D + V + ED V+ + P I
Sbjct: 369 GLRSILEDILLDTMFELPGMDNVTEVVVNEDAVMSSAKPLMI 410
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSDNPSIT--RDVSGEGVQQALLKI 214
>gi|2674203|gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis thaliana]
Length = 579
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 147/218 (67%), Gaps = 19/218 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ +++ IS R+++ +GFG
Sbjct: 322 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFG 381
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + +AAV++ ++ VE DLI +G+IPEFVGRFP+
Sbjct: 382 APV--RANMRAGGVT-----TAAVASN--------LMETVETSDLIAYGLIPEFVGRFPV 426
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + L+++LTEPKNA+ +QY+ ++ M+ V L F+ AL+ IAR A+ K TGAR
Sbjct: 427 LVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTESALRLIARKAITKNTGAR 486
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLK 233
GLRA++ES+L+DSMYE+P GSD++ + ++ ++
Sbjct: 487 GLRALLESILMDSMYEIPDEGTGSDMIEAVVVDEEAVE 524
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 285 AAAQQGIVYIDEVDKITKKAESLYISRDVSGEGVQQALLKM 325
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 289 QGIVYIDEVDKITKKAESLYISRDVSGEGVQQALLKM 325
>gi|357149621|ref|XP_003575175.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 2 [Brachypodium distachyon]
Length = 658
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 150/233 (64%), Gaps = 20/233 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 406 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 465
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP AS+ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 466 APVR-------ASMRTGGISSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 510
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 511 LVSLAALNEDQLVQVLTEPKNALGKQFRKLFSMNNVKLHFTDSALRIIAKKAMCKNTGAR 570
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLD 247
GLR I+E++L+DSMYE+P + I V + ED V P I++ D
Sbjct: 571 GLRTILENILMDSMYEIPDTKSGEKRIDAVVVDEDAVGSVDRPGCGAKILYGD 623
>gi|308446478|ref|XP_003087188.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
gi|308260041|gb|EFP03994.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
Length = 436
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 143/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTANILFICGGAFSGLEKVVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TANVKNKDDSKKVSELFRQVEAADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+QE L++ILTEPKNA+ +QYQ LF M+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 310 IATLEELDQEALMQILTEPKNALTRQYQYLFEMENVDLLFEDSALRAIAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P SDI V I E + AP +
Sbjct: 370 GLRSILENVLLETMYDLPSRSDIGTVIINEAVINDKAAPEF 410
>gi|134300400|ref|YP_001113896.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum
reducens MI-1]
gi|134053100|gb|ABO51071.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Desulfotomaculum reducens MI-1]
Length = 416
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D++I R +K LGFG
Sbjct: 205 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIDKIIQNRTGKKQLGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + LAN + DL+ FG+IPEFVGR P+
Sbjct: 265 AEIETQKEKKIGEI--LAN--------------------ILPEDLLKFGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E LVRILTEPKNA+ +QYQ LF +D VDL PE+L+ +A+ AL++KTGAR
Sbjct: 303 IVTLDALDEEALVRILTEPKNALTKQYQKLFELDGVDLELQPESLREVAKEALKRKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MY++P DI V IT+D +LK + P I
Sbjct: 363 GLRAIMEEAMLGIMYDIPSREDISKVVITKDAILKKSEPLLI 404
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae R2866]
Length = 411
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA++GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFSGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+ES+LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|260892393|ref|YP_003238490.1| ATP-dependent protease ATP-binding subunit ClpX [Ammonifex degensii
KC4]
gi|260864534|gb|ACX51640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex
degensii KC4]
Length = 420
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R + K +GFG
Sbjct: 208 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIQNRISRKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V E+D + L+Q+ +DL+ FG+IPEFVGR PI
Sbjct: 268 A-------------------ELVVQREQDLGK---ILRQILPQDLLKFGLIPEFVGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L ++ LVRILTEP+NA+I+QYQ LF +D V L F PEA++AIA+ AL + TGAR
Sbjct: 306 IVTLDPLTEDDLVRILTEPRNALIRQYQKLFELDGVQLEFQPEAIRAIAQEALRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++L+ MYE+P D+ I+ DTVLK P I
Sbjct: 366 GLRAILEEIMLNVMYEIPSRGDVTKCIISRDTVLKREQPILI 407
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLVQAADYDIEKAERGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|408379475|ref|ZP_11177069.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
albertimagni AOL15]
gi|407746959|gb|EKF58481.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
albertimagni AOL15]
Length = 425
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 146/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I++D V N+ P YI
Sbjct: 371 GLRSIMEKILLDTMFELPELEGVREVVISDDVVNGNSRPLYI 412
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|372279705|ref|ZP_09515741.1| ATP-dependent protease ATP-binding subunit ClpX [Oceanicola sp.
S124]
Length = 421
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ R + + +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVRDNDARGVGEI----------------------FQDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+ E LV ILTEPKNA+++QYQ LF ++ V+LTF+ +ALQ+IA+ A+E+KTGAR
Sbjct: 308 LATLEDLDAEALVTILTEPKNALVKQYQRLFELEDVELTFTDDALQSIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG D+ V + E+ V + AP I
Sbjct: 368 GLRSILEDILLDTMFELPGMDDVTEVVVNEEAVTADAAPLMI 409
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|405955203|gb|EKC22408.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Crassostrea gigas]
Length = 282
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 10/222 (4%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EG ++ VP+ + K + + VDTTNILF+ SGA++GL +I RR N K GF
Sbjct: 39 LLKMMEGAVIKVPDLSGSGK---KTIDVDTTNILFIFSGAFSGLTNIIQRRTNIKPFGFT 95
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E + A+ D +QS + EKD L+ VE DL++FGMIPEF+GR P+
Sbjct: 96 SETPED--KEGANATDTIHQSDTT-----DHEKDEILRAVEVDDLVNFGMIPEFIGRIPV 148
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
F ++ E+L++IL EP+NA+I QY+ L MD L F EAL A+A A E TGAR
Sbjct: 149 FAVFENMTTEMLIKILKEPRNALIPQYETLLEMDGAKLKFEEEALVAVAEKAKESGTGAR 208
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
LR+ +E++LL+ MYE P SDI + IT+DTV T P Y++
Sbjct: 209 ALRSRLENILLEPMYEAPNSDIEEIIITKDTVENKTPPVYVQ 250
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 240 IRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
I GIVFLDEVDKI + G RDVGGEGVQQ +LK+
Sbjct: 6 ISGIVFLDEVDKISSKKGGQFQRDVGGEGVQQSLLKM 42
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%)
Query: 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GIVFLDEVDKI + G RDVGGEGVQQ +LK+
Sbjct: 8 GIVFLDEVDKISSKKGGQFQRDVGGEGVQQSLLKM 42
>gi|317123028|ref|YP_004103031.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermaerobacter marianensis DSM 12885]
gi|315593008|gb|ADU52304.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermaerobacter marianensis DSM 12885]
Length = 419
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA+ GLD++IS R + LGFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGLDKIISSRIGRRVLGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ ++ ++ L+ + DL+ FG+IPEFVGR P+
Sbjct: 268 A---EVRSKQETNVGEI-------------------LRHIMPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+++ LVRILTEPKNA+++QY L +D V+L F PEAL+AIA+ AL++ TGAR
Sbjct: 306 IATLDALDEDALVRILTEPKNALVKQYHKLLALDNVELEFEPEALRAIAQEALKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E L+LD MYE+PG D+ V +TE+TV + P
Sbjct: 366 GLRAIVEELMLDLMYELPGRDDVARVVVTEETVRQRREP 404
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAERGIVYIDEIDKIARKAENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIVYIDEIDKIARKAENPSIT--RDVSGEGVQQALLKI 211
>gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 440
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E +Q+DTTNILF+ GA++GLD+ I RR ++ LGFG
Sbjct: 227 LLKILEGTVSNVPPQGGRKHPQQEFIQIDTTNILFICGGAFDGLDKYILRRTDKSALGFG 286
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ SL D N S A + A L++VE DL+ FG+IPE +GR P+
Sbjct: 287 S-----------SLKD--NSSEA---------EKALLRKVEPHDLVKFGLIPELIGRLPV 324
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+L EP+N++++QY+ L +MD V+L F+ EAL AIAR +E+KTGAR
Sbjct: 325 ITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELNFTDEALHAIARKTIERKTGAR 384
Query: 200 GLRAIMESLLLDSMYEVP-GSDILMVHITEDTV 231
GLR++MES+LL MYEVP + I+ V + EDTV
Sbjct: 385 GLRSVMESILLPIMYEVPTDATIIRVTVDEDTV 417
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDVGGEGVQQ +L
Sbjct: 171 GEDVENILLKLIQAADFDVQKAQIGIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALL 228
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P +I N +I
Sbjct: 229 KILEGTVSNVPPQGG---RKHPQQEFIQIDTTNILFIC 263
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDVGGEGVQQ +LK+
Sbjct: 195 GIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALLKI 230
>gi|359790767|ref|ZP_09293648.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359253255|gb|EHK56410.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 422
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GF
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V++ ED + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 271 --------------------SATVASPEDRRSGEVF-RLVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ VDLTF AL AIA+ A+E+KTGAR
Sbjct: 310 LATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVQEVVISEEVVTGSARPLYI 411
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|297792705|ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
lyrata]
gi|297310072|gb|EFH40496.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 152/231 (65%), Gaps = 19/231 (8%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ +++
Sbjct: 302 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 361
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+++ +GFGAP A RA + + AAV++ ++ VE+ DLI
Sbjct: 362 ISERRHDSSIGFGAPV--RANMRAGGVTN-----AAVASN--------LMETVESSDLIA 406
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEFVGRFP+LV +L + L+++LTEPKNA+ +QY+ ++ M+ V L F+ AL+
Sbjct: 407 YGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTESALRL 466
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLK 233
IAR A+ K TGARGLR+++ES+L+DSMYE+P GSD++ + ++ ++
Sbjct: 467 IARKAITKNTGARGLRSLLESILMDSMYEIPDESTGSDMIEAVVVDEEAVE 517
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 278 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 318
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 282 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 318
>gi|120554757|ref|YP_959108.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
aquaeolei VT8]
gi|387813880|ref|YP_005429363.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|166214783|sp|A1U1Q2.1|CLPX_MARAV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|120324606|gb|ABM18921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinobacter
aquaeolei VT8]
gi|381338893|emb|CCG94940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 427
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTGNILFICGGAFAGLDKVIQERSERSSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V +++D+K +++VE DL+ FG+IPEFVGR P+
Sbjct: 273 --------------------SATVKSQDDSKSTGDIIREVETEDLVKFGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILTEPKNA+ +QYQ LF M+ V+L F +AL+A+AR A+E+KTGAR
Sbjct: 313 VATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V I E + ++ P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEHDVSKVVIDESVIKGDSEPFKI 414
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>gi|405977899|gb|EKC42326.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial [Crassostrea gigas]
Length = 581
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 140/225 (62%), Gaps = 12/225 (5%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
L +LE +VNV EK R QVDTTNILF+ASGA+ G+ LI R N K GFG
Sbjct: 348 FLKLLESNVVNVTEKMGKRNAHETTYQVDTTNILFIASGAFTGITDLIQGRTNLKNFGFG 407
Query: 80 APSTES--AGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
+ ++ +L+D+ E+ N + D L QVE D++ FG+IPEFVGRF
Sbjct: 408 VHNDKAILHEEEERTLSDI---------EQLNLKYDRLLGQVETEDVVKFGLIPEFVGRF 458
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
I+VP HSLN++ LV+ILTE KN++I Q + L D+ L F+ AL+AIA+ A++KKTG
Sbjct: 459 HIVVPLHSLNEDHLVKILTETKNSLIAQKEFLLAYDECQLIFTDSALRAIAQRAIKKKTG 518
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
ARG+ I+E +LL MYEVP D+ V IT DTV K P+YIR
Sbjct: 519 ARGIHHILEEVLLTPMYEVPSMPDVEKVIITADTVNKKELPTYIR 563
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 6/42 (14%)
Query: 241 RGIVFLDEVDKIGA-VPG-----IHQLRDVGGEGVQQGMLKV 276
+GIV+LDEVDKI + VPG ++ RDVGGEGVQQ LK+
Sbjct: 310 QGIVYLDEVDKIRSIVPGNSSRGVNSSRDVGGEGVQQAFLKL 351
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 6/44 (13%)
Query: 283 GIVFLDEVDKIGA-VPG-----IHQLRDVGGEGVQQGMLKVSTS 320
GIV+LDEVDKI + VPG ++ RDVGGEGVQQ LK+ S
Sbjct: 311 GIVYLDEVDKIRSIVPGNSSRGVNSSRDVGGEGVQQAFLKLLES 354
>gi|326501208|dbj|BAJ98835.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 138/198 (69%), Gaps = 15/198 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 385 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 444
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP AS+ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 445 APVR-------ASMRTSGISSAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 489
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 490 LVSLSALNEDQLVQVLTEPKNALGKQFKKLFSMNNVKLHFTDAALRIIAQKAMCKNTGAR 549
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR I+E++L+DSMYE+P
Sbjct: 550 GLRTILENILMDSMYEIP 567
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ ++A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 329 GEDVESILYKLLSVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 388
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 352 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 388
>gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
influenzae PittEE]
gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittEE]
Length = 411
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+ES+LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittII]
gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae F3047]
gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittII]
gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae F3047]
Length = 411
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+ES+LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
manganoxydans SI85-9A1]
gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
manganoxydans SI85-9A1]
Length = 422
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V+ +D + D F +QVE DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AANVAGPDDRRTGDVF-RQVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+IL EPKNA+++QYQ LF M+ V+L+F +AL+AIAR A+E+KTGAR
Sbjct: 308 LATLEDLDEAALVQILEEPKNALVKQYQRLFEMENVELSFHEDALRAIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+++P + + V I+ED + N P YI
Sbjct: 368 GLRSIMEAMLLDTMFDLPTLEGVQEVVISEDVIDGNARPLYI 409
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 246
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|398827197|ref|ZP_10585411.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Phyllobacterium sp. YR531]
gi|398220043|gb|EJN06503.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Phyllobacterium sp. YR531]
Length = 424
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GF
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SAAV A D++ A +++E DL+ FG+IPEFVGR P+
Sbjct: 271 --------------------SAAVKAP-DDRRVGAIFRELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+IL+EPKNA+++QYQ LF M+ V+LTF +AL+AIA+ A+ +KTGAR
Sbjct: 310 IATLEDLDEVALVQILSEPKNALVKQYQRLFDMENVELTFHEDALKAIAKRAIARKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+MYE+P D + V I+ D V N+ P YI
Sbjct: 370 GLRSIMEKILLDTMYELPTLDGVQEVVISGDVVEGNSRPLYI 411
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|46205724|ref|ZP_00048164.2| COG1219: ATP-dependent protease Clp, ATPase subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 223
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 143/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 10 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 69
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 70 A---------------------SVQAPDDRRTGEIF-RSVEPEDLLKFGLIPEFVGRLPV 107
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 108 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGAR 167
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG D + V I + V + P +I G
Sbjct: 168 GLRSILETILLDTMYDLPGLDSVEQVVIGPEVVEGKSRPLFIHG 211
>gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
7P49H1]
gi|386266552|ref|YP_005830044.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae R2846]
gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
7P49H1]
gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae R2846]
Length = 411
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+ES+LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|262373454|ref|ZP_06066732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
junii SH205]
gi|262311207|gb|EEY92293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
junii SH205]
Length = 436
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 146/221 (66%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLDELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFDESALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSY 239
GLR+I+E++LL++MY++P + I ++ V+ TA P+Y
Sbjct: 369 GLRSILENVLLETMYDLPSRKDVGTVIVDEAVINGTAKPTY 409
>gi|359490703|ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 2 [Vitis vinifera]
Length = 577
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 144/217 (66%), Gaps = 19/217 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 321 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 380
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R D AAV++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 381 APV--RANMRTGGPTD-----AAVAS--------SLLETVESSDLISYGLIPEFVGRFPI 425
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV +LTEPKNA+ +QY+ +F M+ V L F+ AL+ I+R A+ K TGAR
Sbjct: 426 LVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGAR 485
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVL 232
GLR+I+E++L+++MYE+P G+DI+ + +D +
Sbjct: 486 GLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAV 522
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 284 AAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 324
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 288 QGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 324
>gi|449515470|ref|XP_004164772.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent Clp protease
ATP-binding subunit ClpX-like [Cucumis sativus]
Length = 571
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 148/230 (64%), Gaps = 19/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RGE +Q+DT +ILF+ L + IS R+ + LGFG
Sbjct: 318 LLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGVPSLXLGKTISERRQDSSLGFG 377
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA + D A V++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 378 APV--RANMRAGGVTD-----AMVTS--------SLLETVESSDLIAYGLIPEFVGRFPI 422
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV++LTEPKNA+ +QY+ +F M+ V L F+ +L+ IAR A+ K TGAR
Sbjct: 423 LVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENSLRLIARKAMSKNTGAR 482
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLKNTAPSYIRGIVF 245
GLR+I+E+LL+DSMYE+P G DI+ I ++ + + +P + I++
Sbjct: 483 GLRSILENLLMDSMYEIPDVRTGKDIIDAVIVDEESVGSDSPGFGAKILY 532
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 281 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 285 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 321
>gi|444911913|ref|ZP_21232083.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cystobacter
fuscus DSM 2262]
gi|444717560|gb|ELW58387.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cystobacter
fuscus DSM 2262]
Length = 425
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NV + + + E VQVDTTNILF+ GA++G+D +I RR EK LGFG
Sbjct: 218 LLKIIEGTRANVTPRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGVIKRRVGEKGLGFG 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R L L VE DL+ FGMIPEF+GR P+
Sbjct: 278 AKITHREERSVGEL----------------------LAMVEPEDLMKFGMIPEFIGRLPV 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L +E L+ ILT+PKNA+I+QYQ LF M+KV LTF+ EAL+AIAR A+ + +GAR
Sbjct: 316 VATLNDLKEEDLITILTQPKNALIKQYQKLFEMEKVKLTFTKEALKAIAREAMRRNSGAR 375
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E +LD MY+VP D + ITE V K+ AP +
Sbjct: 376 GLRAILEDAMLDIMYDVPYRDGVKECKITETVVTKHDAPQLV 417
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
AA GIV++DE+DKI G P RDVGGEGVQQ +LK+ P G +Y
Sbjct: 183 AARGIVYIDEIDKIARKGDTPS--ATRDVGGEGVQQALLKIIEGTRANVTPRGG---KKY 237
Query: 337 PNTGYIWYRYPNTGYIW 353
Y+ N +I
Sbjct: 238 NQQEYVQVDTTNILFIC 254
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI G P RDVGGEGVQQ +LK+
Sbjct: 185 RGIVYIDEIDKIARKGDTPS--ATRDVGGEGVQQALLKI 221
>gi|332637218|ref|ZP_08416081.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella cibaria
KACC 11862]
Length = 417
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI NVP + + E +Q+DTTNILF+ GA+ G+++++ R K +GFG
Sbjct: 213 LLKMLEGTIANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIEQMVKERVGAKVIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S + + N +K + ++QV DL+ FG+IPEF+GR PI
Sbjct: 273 TDSK--------------------TVQFKNTDK-SIMQQVVPEDLMSFGLIPEFIGRLPI 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LVRILTEPKNA+++QYQ L ++ V LTF+PEAL+A+A LA+E++TGAR
Sbjct: 312 LTALEELTEDDLVRILTEPKNALVKQYQALLALEGVALTFTPEALKAMAHLAIERETGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E + D M++VP D+ V ITE VL+N P +
Sbjct: 372 GLRSIIEETMRDVMFDVPSRDDVNGVIITEGAVLRNEQPEMV 413
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADYDVERAETGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPNQEFIQIDTTNILFI 248
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
>gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
influenzae NT127]
gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
influenzae NT127]
Length = 411
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA++GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFSGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|225455378|ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 1 [Vitis vinifera]
Length = 583
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 144/217 (66%), Gaps = 19/217 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 327 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 386
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R D AAV++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 387 APV--RANMRTGGPTD-----AAVAS--------SLLETVESSDLISYGLIPEFVGRFPI 431
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV +LTEPKNA+ +QY+ +F M+ V L F+ AL+ I+R A+ K TGAR
Sbjct: 432 LVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGAR 491
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVL 232
GLR+I+E++L+++MYE+P G+DI+ + +D +
Sbjct: 492 GLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAV 528
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 290 AAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 330
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 294 QGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 330
>gi|345428917|ref|YP_004822033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Haemophilus parainfluenzae T3T1]
gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Haemophilus parainfluenzae T3T1]
Length = 412
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 145/220 (65%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI +VP + + + EM++VDT+ ILF+ GA+ GLD++I +R + + +GF
Sbjct: 208 LLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKILFICGGAFAGLDKIIGKRTQTDTGIGF 267
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A V EED + +QVE DL+ FG+IPEF+GR P
Sbjct: 268 ---------------------DAKVEKEEDKENLSELFRQVEPDDLMKFGLIPEFIGRLP 306
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E L++ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 307 MIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGA 366
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E+T++ N P
Sbjct: 367 RGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETIVDNKPP 406
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGI 299
+GI+++DE+DKI G RDV GEGVQQ +LK+ I +VP
Sbjct: 175 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIE------------GTIASVP-- 220
Query: 300 HQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ MLKV TS + +
Sbjct: 221 ---PQGGRKHPQQEMLKVDTSKILF 242
>gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
12614]
gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
12614]
Length = 421
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGTQTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A ED + + F ++E DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------QAKVHAPEDRRIGELF-AELEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILTEPKNA+++QYQ LF M++V+L+F EAL+AIAR A+E+KTGAR
Sbjct: 308 IATLEDLDEEALVTILTEPKNALVKQYQRLFEMEQVELSFHEEALKAIARRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+MYE+PG + V I+ + V P YI
Sbjct: 368 GLRSILEAILLDTMYELPGLKGVKEVVISPEVVKGEARPLYI 409
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALLKI 213
>gi|302143904|emb|CBI23009.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 144/217 (66%), Gaps = 19/217 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 327 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 386
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R D AAV++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 387 APV--RANMRTGGPTD-----AAVAS--------SLLETVESSDLISYGLIPEFVGRFPI 431
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV +LTEPKNA+ +QY+ +F M+ V L F+ AL+ I+R A+ K TGAR
Sbjct: 432 LVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGAR 491
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVL 232
GLR+I+E++L+++MYE+P G+DI+ + +D +
Sbjct: 492 GLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAV 528
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 290 AAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 330
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 294 QGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 330
>gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
129PT]
gi|122945369|sp|Q0I4F0.1|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
somnus 129PT]
Length = 414
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE--KYLG 77
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R N K +G
Sbjct: 209 LLKLVEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKIIEKRTNTGGKGIG 268
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGA D+ VS E KQVE DL+ FG+IPEF+GR
Sbjct: 269 FGA--------------DVRIDEEKVSLTE-------LFKQVEPDDLMKFGLIPEFIGRL 307
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ P L++E LV+ILTEPKNA+ +QYQ+LF+++ ++L F+ EAL A+A+ AL +KTG
Sbjct: 308 PVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTG 367
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
ARGLR+I+E+LLLD+MY++P + L V + E+TV +N AP
Sbjct: 368 ARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTENKAP 408
>gi|430003193|emb|CCF18978.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhizobium sp.]
Length = 425
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I++D V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISDDVVKGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
populi BJ001]
gi|238692872|sp|B1Z9C8.1|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium populi BJ001]
Length = 423
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 143/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEVF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG D + V I + V + P +I G
Sbjct: 368 GLRSILETILLDTMYDLPGLDSVEQVVIGPEVVDGKSKPLFIHG 411
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|378696914|ref|YP_005178872.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Haemophilus influenzae 10810]
gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Haemophilus influenzae 10810]
Length = 411
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA++GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFSGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|222623077|gb|EEE57209.1| hypothetical protein OsJ_07170 [Oryza sativa Japonica Group]
Length = 583
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 155/246 (63%), Gaps = 20/246 (8%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++
Sbjct: 318 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKT 377
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP A RA ++ SA V++ + L+ VE+ DLI
Sbjct: 378 ISERRQDSSIGFGAPVR--ANMRAGGIS-----SAQVTS--------SLLESVESGDLIA 422
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GRFPILV +LN++ LV++L EPKNA+ +Q++ LF+M+ V L F+ AL+
Sbjct: 423 YGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDAALRI 482
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIR 241
IA+ A+ K TGARGLR I+E++L+D+MYE+P + I V + ED V P
Sbjct: 483 IAKKAMSKNTGARGLRTILENILMDAMYEIPDAKSGEKRIDAVVVDEDAVGAVDQPGCGA 542
Query: 242 GIVFLD 247
I++ D
Sbjct: 543 KILYGD 548
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A+A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 275 GEDVESILYKLLAVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 334
>gi|452995869|emb|CCQ92257.1| protein unfolding ATPase required for presentation of proteins to
proteases [Clostridium ultunense Esp]
Length = 421
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 142/219 (64%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTNILF+ GA++GL+ +I RR +K +GFG
Sbjct: 208 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGLETIIKRRVGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A DL + + +K +L QV DL+ +G+IPEFVGR P+
Sbjct: 268 A--------------DLNSV---------DLKKGEYLSQVIPEDLLKYGLIPEFVGRIPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LVRILTEPKNA+++QYQ L MD V L +PEA++ IA+ A++++TGAR
Sbjct: 305 IATLEPLDEEALVRILTEPKNALVKQYQKLLEMDHVKLEVTPEAVKQIAKEAIKRETGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES++LD MYE+P +D+ ITE+TV K +AP
Sbjct: 365 GLRSILESIMLDVMYEIPSRNDVQKCIITEETVTKKSAP 403
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAERGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 210 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNILFI 243
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|397905706|ref|ZP_10506548.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caloramator
australicus RC3]
gi|397161225|emb|CCJ33883.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caloramator
australicus RC3]
Length = 431
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTNILF+ GA+ G+D++I +R ++ +GFG
Sbjct: 207 LLKILEGTVANVPPQGGRKHPHQEFLQIDTTNILFICGGAFEGIDKIIEKRLHKNSIGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R + LK + DL+ FGMIPEFVGR PI
Sbjct: 267 AEIKSKNERNVGEI----------------------LKHILPEDLLKFGMIPEFVGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V + L+++ L+ ILTEPKNA+ +QY LF MD V+L F EAL+AIA AL++KTGAR
Sbjct: 305 VVTLNQLDKDALINILTEPKNALTKQYAKLFEMDGVELEFEREALEAIADEALKRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLRAIME L++D M+E+P D+ IT DTV+ P I G
Sbjct: 365 GLRAIMEELMMDVMFEIPSREDVAKCIITLDTVVNKQPPKLIIG 408
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 172 AEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKILEGTVANVPPQGG---RKH 226
Query: 337 PNTGYIWYRYPNTGYIW 353
P+ ++ N +I
Sbjct: 227 PHQEFLQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|215769357|dbj|BAH01586.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218190998|gb|EEC73425.1| hypothetical protein OsI_07697 [Oryza sativa Indica Group]
Length = 645
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 151/233 (64%), Gaps = 20/233 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 393 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 452
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA ++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 453 APVR--ANMRAGGIS-----SAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 497
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++L EPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 498 LVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDAALRIIAKKAMSKNTGAR 557
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLD 247
GLR I+E++L+D+MYE+P + I V + ED V P I++ D
Sbjct: 558 GLRTILENILMDAMYEIPDAKSGEKRIDAVVVDEDAVGAVDQPGCGAKILYGD 610
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A+A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 337 GEDVESILYKLLAVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 396
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 360 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 396
>gi|46390353|dbj|BAD15818.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
(CLPX) [Oryza sativa Japonica Group]
Length = 666
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 151/233 (64%), Gaps = 20/233 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 414 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 473
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA ++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 474 APVR--ANMRAGGIS-----SAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 518
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++L EPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 519 LVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDAALRIIAKKAMSKNTGAR 578
Query: 200 GLRAIMESLLLDSMYEVPGSD-----ILMVHITEDTVLKNTAPSYIRGIVFLD 247
GLR I+E++L+D+MYE+P + I V + ED V P I++ D
Sbjct: 579 GLRTILENILMDAMYEIPDAKSGEKRIDAVVVDEDAVGAVDQPGCGAKILYGD 631
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 15/67 (22%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVPGIHQL--------RDVGGEGV 310
GE V+ + K+ A+A F G+V++DEVDKI + + RDV GEGV
Sbjct: 351 GEDVESILYKLLAVADFNVQAAQQGMVYIDEVDKITKKADVFNMQAESLNISRDVSGEGV 410
Query: 311 QQGMLKV 317
QQ +LK+
Sbjct: 411 QQALLKM 417
>gi|406035384|ref|ZP_11042748.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
parvus DSM 16617 = CIP 108168]
Length = 436
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 145/221 (65%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDRKKISELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFDESALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSY 239
GLR+I+E++LL++MY++P + I ++ V+ TA P+Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVIVDEAVINGTAKPTY 409
>gi|366162939|ref|ZP_09462694.1| ATP-dependent protease ATP-binding subunit ClpX [Acetivibrio
cellulolyticus CD2]
Length = 431
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D++I R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + +Q E LK + +DL+ FG+IPEFVGR P+
Sbjct: 268 AK--------------IESQKTIDMGE--------ILKHIYPQDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL++ L++ILTEPKNA+++QYQ LF MD+V+L F AL+AIA ++E+ TGAR
Sbjct: 306 MVSLQSLDKAALIQILTEPKNALVKQYQKLFEMDEVELEFETGALEAIAEKSIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++L+ MY++P ++ +T DTV+ NTAP+ +
Sbjct: 366 GLRAIIEEIMLEVMYDIPTMGNVEKCTVTRDTVVNNTAPTIV 407
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
M21/2]
gi|158442839|gb|EDP19844.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Faecalibacterium prausnitzii M21/2]
gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Faecalibacterium prausnitzii SL3/3]
Length = 440
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 140/215 (65%), Gaps = 27/215 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E +Q+DTTNILF+ GA++GLD+ I RR ++ LGFG
Sbjct: 227 LLKILEGTVSNVPPQGGRKHPQQEFIQIDTTNILFICGGAFDGLDKYILRRTDKSALGFG 286
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDN--KEKDAFLKQVEARDLIDFGMIPEFVGRF 137
SA +DN + + A L++VE DL+ FG+IPE +GR
Sbjct: 287 ------------------------SALKDNSTEAERALLRKVEPHDLVKFGLIPELIGRL 322
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ L+++ LVR+L EP+N++++QY+ L MD V+LTF+ EAL AIAR +E+KTG
Sbjct: 323 PVITVLDDLDEDALVRVLKEPRNSLVKQYKELLGMDNVELTFTDEALHAIARKTIERKTG 382
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTV 231
ARGLR++MES+LL MYEVP + I+ V + EDTV
Sbjct: 383 ARGLRSVMESILLPIMYEVPSDATIIRVTVDEDTV 417
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDVGGEGVQQ +L
Sbjct: 171 GEDVENILLKLIQAADFDVQKAQIGIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALL 228
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P +I N +I
Sbjct: 229 KILEGTVSNVPPQGG---RKHPQQEFIQIDTTNILFIC 263
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDVGGEGVQQ +LK+
Sbjct: 195 GIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALLKI 230
>gi|392407108|ref|YP_006443716.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Anaerobaculum mobile DSM 13181]
gi|390620244|gb|AFM21391.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Anaerobaculum mobile DSM 13181]
Length = 427
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 144/223 (64%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP K + + +QVDTTNILF+ GA+ G++ +I+RR +++ +GFG
Sbjct: 220 LLRLLEGTVSNVPPKGGRKHPYQDFIQVDTTNILFICGGAFGGIEDIIARRIHKRTIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ G + + D+ LK+++ DL+ +G IPEF+GR P+
Sbjct: 280 G---DIVGSKQKASWDI-------------------LKEIQPDDLMKYGFIPEFIGRLPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP L++ LV IL EPKN++++QY+ LF+ + VDL F+ EAL AIAR+A E+ TGAR
Sbjct: 318 IVPLEGLDKNALVHILQEPKNSLVRQYKELFSYEDVDLEFTDEALLAIARVAQERNTGAR 377
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSYI 240
GLR+IME L+LD MY++P S+I V ITE+ VLK +P YI
Sbjct: 378 GLRSIMEKLMLDIMYDLPNIASEIAKVRITEECVLKGASPIYI 420
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 278 ALAAFGIVFLDEVDKIGA---VPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334
+LA GIV++DE+DKI P I RDV GEGVQQG+L++ + P G
Sbjct: 183 SLAERGIVYIDEIDKIARKSYSPSI--TRDVSGEGVQQGLLRLLEGTVSNVPPKGG---R 237
Query: 335 RYPNTGYIWYRYPNTGYIW 353
++P +I N +I
Sbjct: 238 KHPYQDFIQVDTTNILFIC 256
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGA---VPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQG+L++
Sbjct: 187 RGIVYIDEIDKIARKSYSPSI--TRDVSGEGVQQGLLRL 223
>gi|227504042|ref|ZP_03934091.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
striatum ATCC 6940]
gi|227199372|gb|EEI79420.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
striatum ATCC 6940]
Length = 431
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DT+NILF+ +GA+ GLD++I+ R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDKVIAERVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E+A D +EK +V DL+ FG+IPEF+GR PI
Sbjct: 283 A-KLETA---------------------DEREKLDLFSEVRPEDLVKFGLIPEFIGRLPI 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++L EPKN++++QYQ LF MD +L F AL AIA LALE+KTGAR
Sbjct: 321 VATVDNLDRESLVKVLVEPKNSLVKQYQRLFEMDGAELVFEDGALGAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MYE+P DI VHITE V PS++
Sbjct: 381 GLRAIMEELLVPIMYELPDREDITAVHITEACVKGEDEPSFV 422
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 189 RLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
R+ +E+ G G R +E D E+ S+IL++ T + +Y+
Sbjct: 99 RIKVEETAGLEGRRKKVE----DENVEIAKSNILLLGPT------GSGKTYL-AQTLARM 147
Query: 249 VDKIGAVPGIHQLRDVG--GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV--- 296
+D A+ L + G GE V+ +LK+ A F GI+++DEVDKI
Sbjct: 148 LDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQRGIIYVDEVDKISRKSEN 207
Query: 297 PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P I RDV GEGVQQ +LK+ + P G ++PN +I N +I
Sbjct: 208 PSIT--RDVSGEGVQQALLKILEGTVAAIPPQGG---RKHPNQEFIQLDTSNILFI 258
>gi|356516065|ref|XP_003526717.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Glycine max]
Length = 524
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 143/211 (67%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGT+VNVPEK + + RG+ +Q+DT NILF+ GA+ L++
Sbjct: 258 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKT 317
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+++ +GFGAP A R + + AAV++ + L+ VE+ DLI
Sbjct: 318 ISERRHDSSIGFGAPI--RANMRTGKVTE-----AAVAS--------SLLETVESSDLIA 362
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEFVGRFPILV +L + L+++L+EPKNA+ +QY+ +F M+ V L F+ AL++
Sbjct: 363 YGLIPEFVGRFPILVSLSALTENQLIQVLSEPKNALGKQYKKMFQMNGVKLHFTENALRS 422
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
IAR A+ K TGARGLR+I+E++L+D+MYE+P
Sbjct: 423 IARKAISKNTGARGLRSILENVLVDAMYEIP 453
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 234 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 274
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 238 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 274
>gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
extorquens PA1]
gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
extorquens CM4]
gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens AM1]
gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens DM4]
gi|418060065|ref|ZP_12697993.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens DSM 13060]
gi|238687353|sp|A9W5F6.1|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|254763853|sp|B7KNT1.1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium extorquens PA1]
gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium extorquens CM4]
gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens AM1]
gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens DM4]
gi|373566383|gb|EHP92384.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Methylobacterium extorquens DSM 13060]
Length = 423
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 142/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEVF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P +I G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLFIHG 411
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya
novella DSM 506]
gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya
novella DSM 506]
Length = 423
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GLD++IS R +GF
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKIISSRGKGTSIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V+A ED K + F ++VE DL+ +G+IPEF+GR P+
Sbjct: 270 --------------------SAVVAAPEDRKPGEVF-REVEPEDLLKYGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L +IL EPKNA+++QYQ LF M+ V+LT EAL AIAR A+E+KTGAR
Sbjct: 309 IATLGDLDEEALKKILAEPKNALVKQYQRLFEMENVELTIHEEALGAIARKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG + + V I+++ V +N P YI
Sbjct: 369 GLRSIMEGILLDTMFDLPGLEGVEEVVISKEVVEQNARPLYI 410
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVASVPPQGG---RKHPQQEFLQVDTSNILFIC 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
3655]
gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittHH]
gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
influenzae PittGG]
gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
3655]
gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittHH]
gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittGG]
Length = 411
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|294651551|ref|ZP_06728860.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
haemolyticus ATCC 19194]
gi|292822574|gb|EFF81468.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
haemolyticus ATCC 19194]
Length = 436
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 142/217 (65%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E++LL++MY++P + I ++ V+ TA
Sbjct: 369 GLRSILENVLLETMYDLPSRSDVGTVIVDEAVINGTA 405
>gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
R3021]
gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
22.4-21]
Length = 411
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKKQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|355628697|ref|ZP_09049919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
sp. 7_3_54FAA]
gi|354819587|gb|EHF04028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
sp. 7_3_54FAA]
Length = 433
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL+++I R +GF
Sbjct: 210 LLKILEGTVASVPPQGGRKHPQQELLQIDTTNILFICGGAFDGLEKIIENRLGAGSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + D NQ D LKQV +DL FG+IPEF+GR P+
Sbjct: 270 A-----------EIVDKQNQDI-----------DELLKQVMPQDLTKFGLIPEFIGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SL+++ LV+IL+EPKNA+I+QYQ F +D V L F+ EAL AIA LA+E+KTGAR
Sbjct: 308 TVALRSLSEDALVKILSEPKNAIIKQYQAFFDLDGVKLEFTEEALAAIAHLAVERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES+++D MYE+P S I + +T++ V + P +
Sbjct: 368 GLRSIMESIMMDIMYEIPSDSSIGICTVTKEAVEGKSEPELV 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKIIQSADYDISKAEYGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P + N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPQQELLQIDTTNILFIC 246
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
influenzae Rd KW20]
gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
influenzae 86-028NP]
gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittAA]
gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
influenzae RdAW]
gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus
influenzae F3031]
gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
aegyptius ATCC 11116]
gi|1168980|sp|P44838.1|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus
influenzae Rd KW20]
gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae 86-028NP]
gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
PittAA]
gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
influenzae RdAW]
gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
influenzae F3031]
gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
aegyptius ATCC 11116]
Length = 411
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
WAL-14163]
gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
symbiosum WAL-14673]
gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
WAL-14163]
gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
symbiosum WAL-14673]
Length = 433
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL+++I R +GF
Sbjct: 210 LLKILEGTVASVPPQGGRKHPQQELLQIDTTNILFICGGAFDGLEKIIENRLGAGSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + D NQ D LKQV +DL FG+IPEF+GR P+
Sbjct: 270 A-----------EIVDKQNQDI-----------DELLKQVMPQDLTKFGLIPEFIGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SL+++ LV+IL+EPKNA+I+QYQ F +D V L F+ EAL AIA LA+E+KTGAR
Sbjct: 308 TVALRSLSEDALVKILSEPKNAIIKQYQAFFDLDGVKLEFTEEALTAIAHLAVERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES+++D MYE+P S I + +T++ V + P +
Sbjct: 368 GLRSIMESIMMDIMYEIPSDSSIGICTVTKEAVEGKSEPELV 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKIIQSANYDISKAEYGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P + N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPQQELLQIDTTNILFIC 246
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|226953944|ref|ZP_03824408.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
ATCC 27244]
gi|226835298|gb|EEH67681.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
ATCC 27244]
Length = 436
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 142/217 (65%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E++LL++MY++P + I ++ V+ TA
Sbjct: 369 GLRSILENVLLETMYDLPSRSDVGTVIVDEAVINGTA 405
>gi|119713090|gb|ABL97159.1| ATP-dependent Clp protease ATP-binding subunit ClpX [uncultured
marine bacterium EB0_49D07]
Length = 414
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 139/218 (63%), Gaps = 23/218 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + E +Q+DT+NILF+ GA++G+D +I R + +GFG
Sbjct: 205 LLKLIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGIDEVIKHRTDNSGIGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ A+ ++ +E DL+ FG+IPEFVGR P+
Sbjct: 265 AAVKDTKATVAS-----------------------IVETLEPEDLVKFGLIPEFVGRLPV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L++E LVRIL EPKNA++ QY+ LF +D+V+L F EAL IA+ AL++KTGAR
Sbjct: 302 ISTLHELDEEALVRILQEPKNALVNQYKYLFEIDEVELDFRTEALIEIAKRALKRKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
GLR+IME LL+D+M+E+P D+ V + E++VL +T P
Sbjct: 362 GLRSIMEELLMDTMFELPNVDLEKVIVDENSVLHSTDP 399
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
AA GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 170 AALGIVYIDEIDKIARKSDNPSIT--RDVSGEGVQQALLKLIEGTVASIPPQGG---RKH 224
Query: 337 PNTGYIWYRYPNTGYIW 353
P +I N +I
Sbjct: 225 PQQEFIQIDTSNILFIC 241
>gi|390630933|ref|ZP_10258905.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Weissella
confusa LBAE C39-2]
gi|390483821|emb|CCF31253.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Weissella
confusa LBAE C39-2]
Length = 417
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI NVP + + E +Q+DTTNILF+ GA+ G+++++ R K +GFG
Sbjct: 213 LLKMLEGTIANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIEQMVKERVGAKVIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S ++ N + ++QV DL+ FG+IPEF+GR PI
Sbjct: 273 TDS---------------------KTQQFNTSDKSIMQQVVPEDLMSFGLIPEFIGRLPI 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LVRILTEPKNA+++QYQ L ++ V LTF+PEAL+A+A LA+E++TGAR
Sbjct: 312 LTALEELTEDDLVRILTEPKNALVKQYQALLALEGVALTFTPEALKAMAHLAIERETGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E + D M++VP D+ V ITE VL + P +
Sbjct: 372 GLRSIIEETMRDVMFDVPSRDDVNGVIITEGAVLNHEQPELV 413
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADYDVERAETGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPNQEFIQIDTTNILFI 248
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
>gi|224132768|ref|XP_002321405.1| predicted protein [Populus trichocarpa]
gi|222868401|gb|EEF05532.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 19/217 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 174 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 233
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R + S AV++ + L+ E+ DL+ +G+IPEFVGRFPI
Sbjct: 234 APV--RANMRTGGVT-----STAVTS--------SLLETAESSDLVSYGLIPEFVGRFPI 278
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ LV++LTEPKNA+ +QY+ LF M+ V L + AL++IAR A+ K TGAR
Sbjct: 279 LVSLAALTEDQLVQVLTEPKNALGKQYKKLFQMNDVKLHVTENALRSIARKAITKNTGAR 338
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVL 232
LR+I+E++L+DSMYE+P G DI+ + ++ +
Sbjct: 339 ALRSILENILMDSMYEIPDVRTGDDIIDAVVVDEVAI 375
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GI+++DE+DKI ++ RDV GEGVQQ +LK+
Sbjct: 137 AAAQQGIIYIDEIDKITKKAESVNISRDVSGEGVQQALLKM 177
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI ++ RDV GEGVQQ +LK+
Sbjct: 141 QGIIYIDEIDKITKKAESVNISRDVSGEGVQQALLKM 177
>gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
sp. 4-46]
gi|238688059|sp|B0UD19.1|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium sp. 4-46]
Length = 423
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RAVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L RIL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+ES+LL++MY++PG D + V I + V P YI G
Sbjct: 368 GLRSILESILLETMYDLPGLDSVEQVVIGPEVVEGKARPLYIHG 411
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
radiotolerans JCM 2831]
gi|238688765|sp|B1LW29.1|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium radiotolerans JCM 2831]
Length = 423
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 140/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L +IL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDEALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P YI G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLYIHG 411
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
6P18H1]
gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
6P18H1]
Length = 411
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVGESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
gi|225206815|gb|EEG89169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coprococcus
comes ATCC 27758]
Length = 416
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + EM+Q+DTTNILF+ GA+ G+D++I R ++K +GF
Sbjct: 208 LLKILEGTIANVPPQGGRKHPQQEMIQIDTTNILFICGGAFEGIDKIIENRIDKKSIGFE 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A EED D L+Q+ +DL+ FG+IPE VGR P+
Sbjct: 268 A-------------------QIAQRHEED---IDRLLQQILPQDLVKFGLIPELVGRVPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E L+RILTEPKNA+++QYQ L +D V+L F EAL+AIA +L++KTGAR
Sbjct: 306 TVSLELLDKEDLIRILTEPKNAIVKQYQKLLELDDVELEFDKEALEAIAETSLKRKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAPS 238
GLRAIME++++D MY+ P + L +T++ VL APS
Sbjct: 366 GLRAIMENVMMDIMYKAPSDENLKYCLVTKEAVLGEKAPS 405
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKIIQAADGDIERAEHGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P I N +I
Sbjct: 210 KILEGTIANVPPQGG---RKHPQQEMIQIDTTNILFIC 244
>gi|424865539|ref|ZP_18289404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86B]
gi|400758807|gb|EJP73009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86B]
Length = 418
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 142/218 (65%), Gaps = 21/218 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + E +QVDT+NILF+ GA++GLD++IS+R ++ +GFG
Sbjct: 207 LLKLIEGTVASIPPQGGRKHPQQEFIQVDTSNILFICGGAFSGLDKIISQRNSKAGIGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ES + + ++ ++E DL+ FG+IPEFVGR P+
Sbjct: 267 A-EVESKSEKNNVIN--------------------YIDELEPEDLVKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L++E LVRIL EP+NA++ QY+ LF +D V+L F EAL IA+ A+++KTGAR
Sbjct: 306 ISTLHELDEEALVRILKEPRNALVNQYKHLFEIDDVELVFRDEALIEIAKKAIKRKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
GLR+IME LL++ MYE+P ++ + I E++V+ N+ P
Sbjct: 366 GLRSIMEELLMEPMYELPDENLEKIIIDENSVISNSDP 403
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 172 AELGIVYIDEIDKIARKSDNPSIT--RDVSGEGVQQALLKLIEGTVASIPPQGG---RKH 226
Query: 337 PNTGYIWYRYPNTGYIW 353
P +I N +I
Sbjct: 227 PQQEFIQVDTSNILFIC 243
>gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum
gilvum SL003B-26A1]
gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum
gilvum SL003B-26A1]
Length = 421
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGRKTSIGFK 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR L ++E DL+ FG+IPEFVGR P+
Sbjct: 270 ANVVGPEDRRIGEL----------------------FSELEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILTEPKNA+++QYQ LF M+ VDL+F EAL+A+AR A+E+KTGAR
Sbjct: 308 IATLEDLDEEALVTILTEPKNALVKQYQRLFEMENVDLSFHEEALKAVARRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+MYE+PG + V I+ + V P YI
Sbjct: 368 GLRSILEAILLDTMYELPGLKGVKEVVISPEVVEGKARPLYI 409
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALLKI 213
>gi|356509253|ref|XP_003523365.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Glycine max]
Length = 524
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGT+VNVPEK + + RG+ +Q+DT NILF+ GA+ L++
Sbjct: 258 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKT 317
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS +++ +GFGAP A R + + AAV++ + L+ VE+ DL+
Sbjct: 318 ISESRHDSSIGFGAPI--RANMRTGKVTE-----AAVAS--------SLLQTVESSDLVA 362
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEFVGRFPILV +L + L+++LTEPKNA+ +QY+ +F M+ V L F+ AL++
Sbjct: 363 YGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHFTENALRS 422
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
IAR A+ K TGARGLR+I+E++L+D+MYE+P
Sbjct: 423 IARKAISKNTGARGLRSILENVLVDAMYEIP 453
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 234 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 274
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 238 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 274
>gi|365158049|ref|ZP_09354292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
smithii 7_3_47FAA]
gi|363622228|gb|EHL73399.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
smithii 7_3_47FAA]
Length = 423
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 143/222 (64%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ T+ + +EKD L +V DL+ FG+IPEF+GR P+
Sbjct: 268 SDPTKG----------------------EIEEKD-LLSKVVPEDLLKFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILT+PKNA+++QYQ + +D V+L F EAL IA+ A+E+KTGAR
Sbjct: 305 IASLEPLDEEALIQILTKPKNALVKQYQKMMELDHVELEFEQEALVEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+ES++LD M+++P DI IT+DTVL N+ P I
Sbjct: 365 GLRSIIESIMLDVMFDLPSREDISKCIITKDTVLNNSMPKLI 406
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Beijerinckia
indica subsp. indica ATCC 9039]
gi|238691227|sp|B2IGP2.1|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 421
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A +D + + F ++VE DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AASVQAPDDRRTGEIF-RKVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L +ILTEPKNA+++QYQ LF M+ +LTF EAL +A+ A+E+KTGAR
Sbjct: 308 IATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IMES+LLD+M+++PG D + V I D V + P YI
Sbjct: 368 GLRSIMESILLDTMFDLPGLDSVEQVVIGPDVVEGKSRPLYI 409
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|149923965|ref|ZP_01912351.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
SIR-1]
gi|149815197|gb|EDM74746.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
SIR-1]
Length = 416
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP K + + + +QVDTTNILF+ GA+ G++ +I R + K +GFG
Sbjct: 209 LLKILEGTIASVPPKGGRKHPQQDFLQVDTTNILFICGGAFAGMEDIIESRVSAKTMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +R L L++V++ DL+ FG+IPEF+GR P+
Sbjct: 269 ATLQEKKEKRHWDL----------------------LQKVQSEDLMKFGLIPEFIGRMPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E LV ILTEPKNA+++QY+ L MD V+LTF+ +AL AIA+ A E++ GAR
Sbjct: 307 VAPLKELDEEALVSILTEPKNALVKQYKRLLRMDGVELTFAEDALHAIAKTAKEQRAGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LD MY++P D I VHI +T+++ T P +
Sbjct: 367 GLRSILERAMLDVMYDIPSVDNITEVHINPETIIEGTQPVLV 408
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI G P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 174 AQRGIIYIDEIDKIARKGDNPSI--TRDVSGEGVQQALLKILEGTIASVPPKGG---RKH 228
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 229 PQQDFLQVDTTNILFIC 245
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI G P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKGDNPSI--TRDVSGEGVQQALLKI 212
>gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
sp. SR1/5]
Length = 437
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 138/239 (57%), Gaps = 23/239 (9%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++GL+
Sbjct: 196 TSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLE 255
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
++I R++ K +GFGA +E R + LK+V D
Sbjct: 256 KIIEARQDTKSIGFGAEVSEKEDRNVGEV----------------------LKEVMPEDF 293
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
I FG+IPEF+GR P++V SL++E L+RIL EPKN++ +QY LF +D V L F EAL
Sbjct: 294 IKFGLIPEFIGRVPVVVTLDSLDEEALIRILKEPKNSLTKQYDKLFELDGVQLEFQDEAL 353
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
+ +AR +LE+KTGARGLRAIME L+D MY+ P D I +T++ V P I G
Sbjct: 354 ETVARKSLERKTGARGLRAIMEHTLMDLMYKTPSDDTIRKCIVTKEAVEGTGEPEIIHG 412
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ +I N +I
Sbjct: 215 LEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 247
>gi|83589393|ref|YP_429402.1| ATP-dependent protease ATP-binding subunit ClpX [Moorella
thermoacetica ATCC 39073]
gi|123524974|sp|Q2RL30.1|CLPX_MOOTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|83572307|gb|ABC18859.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moorella
thermoacetica ATCC 39073]
Length = 419
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++GLD++I R ++K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGLDKIIKNRISQKTMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E G+ + D+ LKQV DL+ +G+IPEFVGR P+
Sbjct: 268 A---EIRGKNDVQVGDI-------------------LKQVLPVDLLKYGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ L+R+LTEP+NA+++QYQ LF MD V L F +AL IAR A++++TGAR
Sbjct: 306 IVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAREAIKRETGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++LD MYE+P ++I IT+D VL+ P
Sbjct: 366 GLRAILEEIMLDVMYEIPSRNNISKCIITKDVVLRKEEP 404
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQLDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|359407411|ref|ZP_09199888.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [SAR116
cluster alpha proteobacterium HIMB100]
gi|356677450|gb|EHI49794.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [SAR116
cluster alpha proteobacterium HIMB100]
Length = 421
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD+LIS R + +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKLISSRNSGAGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R + + L +E DLI FG+IPEF+GR P+
Sbjct: 269 ADVRDPEDRNLSQI----------------------LVDLEPEDLIKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVRILTEPKNA+ +QY+ LF MD V+L F +AL+AIAR A+E+KTGAR
Sbjct: 307 IATLEDLDEDALVRILTEPKNALTKQYKALFDMDGVNLDFRDDALKAIARKAIERKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVP-GSDILMVHITEDTVLKNTAP 237
GLR+I+E +L+D M+E+P S+I V I ED V T P
Sbjct: 367 GLRSILEMILMDPMFEIPTASNIQDVVINEDVVKGTTPP 405
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASDYNVEKAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|413922731|gb|AFW62663.1| hypothetical protein ZEAMMB73_067276 [Zea mays]
Length = 324
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 138/197 (70%), Gaps = 15/197 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 94 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 153
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A RA ++ SA V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 154 APV--RANMRAGGIS-----SAQVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 198
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++L EPKNA+ +Q++ LF+M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 199 LVSLAALNEDQLVQVLIEPKNALGKQFKKLFSMNNVKLHFTDGALRIIAKKAMSKNTGAR 258
Query: 200 GLRAIMESLLLDSMYEV 216
GLR I+E++L+DSMYEV
Sbjct: 259 GLRTILENILMDSMYEV 275
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 38 GEDVESILYKLLTVADFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 61 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 97
>gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
HTCC2506]
gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
HTCC2506]
Length = 422
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLDR+IS R + +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDRIISDRGRKTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ++ K + F +QVE DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AANVEAPDERKSGELF-RQVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+IL EPKNA+++QYQ LF M+ V LTF +AL AIAR A+E+KTGAR
Sbjct: 308 LATLEDLDEAALVQILREPKNALVKQYQRLFEMESVQLTFQEDALGAIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+++P + + V +++D + N P YI
Sbjct: 368 GLRSIMEAMLLDTMFDLPTLEGVQEVVVSDDVIAGNARPLYI 409
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 246
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|397690211|ref|YP_006527465.1| ATP-dependent protease ATP-binding subunit ClpX [Melioribacter
roseus P3M]
gi|395811703|gb|AFN74452.1| ATP-dependent protease ATP-binding subunit ClpX [Melioribacter
roseus P3M]
Length = 417
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI VP + + ++ V+T NILF+ GA+ G++ +I+ R N +GF
Sbjct: 211 LLKILEGTIAGVPPRGGRKHPEQSLINVNTKNILFICGGAFEGIENIIASRINRNVIGFD 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ES + ++D +++V+ DLI +GMIPE VGR PI
Sbjct: 271 A-NIES---------------------NEELDRDNLVEKVQPEDLIKYGMIPELVGRIPI 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P H+L+ E L ILTEPKNA+I+QY+ LF ++ V+L F P AL AI ALE+KTGAR
Sbjct: 309 IAPLHALSAEALKNILTEPKNAIIKQYKKLFALEGVELEFDPRALDAIVNKALERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+ES+LLD MYE+PG D I ITED VLK P YI
Sbjct: 369 GLRSIVESILLDVMYELPGLDNIDKCLITEDVVLKGEKPIYIES 412
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIV++DE+DKI + RDV GEGVQQ +LK+ + P G ++P
Sbjct: 176 AQKGIVYIDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTIAGVPPRGG---RKHPE 232
Query: 339 TGYIWYRYPNTGYIW 353
I N +I
Sbjct: 233 QSLINVNTKNILFIC 247
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 KGIVYIDEIDKIARKSESVSITRDVSGEGVQQALLKI 214
>gi|162451420|ref|YP_001613787.1| ATP-dependent protease ATP-binding subunit ClpX [Sorangium
cellulosum So ce56]
gi|161162002|emb|CAN93307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sorangium
cellulosum So ce56]
Length = 418
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP K + + + +QVDTTNILF+ GA+ GLD++I RR + LGFG
Sbjct: 211 LLKIIEGTIANVPPKGGRKHPQQDFLQVDTTNILFICGGAFVGLDQIIQRRIGQNTLGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + A++D K D L V+ DL+ FG+IPEF+GR P+
Sbjct: 271 AD---------------------IKAKKDFKLGD-LLSVVQPEDLLKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H LN+E L+ ILT+PKN++++QYQ LF MD V + F+ AL A+AR ALE+ +GAR
Sbjct: 309 VATLHELNEEALIDILTKPKNSLVKQYQKLFEMDGVKVKFTRGALVAVARQALERNSGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+ES +LD MY+VP + I V ++ED ++K+ P
Sbjct: 369 GLRAILESAMLDIMYDVPSRTGIKEVVVSEDVIVKHEPP 407
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 176 AQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIIEGTIANVPPKGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQDFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
2336]
gi|189044137|sp|B0UW19.1|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
somnus 2336]
Length = 414
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 145/221 (65%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE--KYLG 77
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R N K +G
Sbjct: 209 LLKLVEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKIIEKRTNTSGKGIG 268
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGA D+ VS E KQVE DL+ FG+IPEF+GR
Sbjct: 269 FGA--------------DVRIDEEKVSLTE-------LFKQVEPDDLMKFGLIPEFIGRL 307
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ P L++E LV+ILTEPKNA+ +QYQ+LF+++ ++L F+ EAL A+A+ AL +KTG
Sbjct: 308 PVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTG 367
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
ARGLR+I+E+LLLD+MY++P + L V + E+TV +N P
Sbjct: 368 ARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTENKVP 408
>gi|393769362|ref|ZP_10357886.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
sp. GXF4]
gi|392725261|gb|EIZ82602.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
sp. GXF4]
Length = 423
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 141/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEIF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L +IL EPKNA+++QYQ LF M+ VDLTF +AL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDDALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P YI G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLYIHG 411
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|374709202|ref|ZP_09713636.1| ATP-dependent protease ATP-binding subunit ClpX [Sporolactobacillus
inulinus CASD]
Length = 422
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A G +A + +D LK V DL+ FG+IPEF+GR P+
Sbjct: 268 A------GSKAQDM-----------------HRDDALKNVLPEDLLKFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV ILT+PKNA+++QY+ L +D VDL F EAL+AIA+LA+E+KTGAR
Sbjct: 305 ISTLKQLDEHTLVEILTKPKNALVKQYKKLLELDDVDLEFDEEALEAIAKLAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD MYE+P DI IT++TV P+ I
Sbjct: 365 GLRSIIEGMMLDVMYELPSREDIDKCIITKETVEGKARPTLI 406
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992114|gb|EEC58118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [[Bacteroides]
pectinophilus ATCC 43243]
Length = 422
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 141/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E++ +DTTNILF+ GA++GL+++I R N+K +GF
Sbjct: 213 LLKIIEGTNASVPPQGGRKHPQQELIPIDTTNILFMCGGAFDGLEKIIEGRMNQKSIGFN 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + D +N+ +V +DL+ FG+IPEFVGR P+
Sbjct: 273 A-----------EIGDRSNEDIG-----------ELFHKVTPQDLVKFGLIPEFVGRVPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL+++ LVRILTEPKNA+++QY+ LF MD+VDL F+P+A++AIA+ + E+KTGAR
Sbjct: 311 VVALDSLDEKALVRILTEPKNALVKQYKKLFEMDEVDLEFTPQAVEAIAKKSFERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+I+E +++D+MY +P D + ITED V P
Sbjct: 371 GLRSIIEEVMMDTMYTIPSDDNVAKCTITEDAVEGKAEP 409
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADGDVERAQYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
>gi|158321198|ref|YP_001513705.1| ATP-dependent protease ATP-binding subunit ClpX [Alkaliphilus
oremlandii OhILAs]
gi|229889849|sp|A8MIS7.1|CLPX_ALKOO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|158141397|gb|ABW19709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
oremlandii OhILAs]
Length = 426
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D +I +R ++K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIDSIIQKRTSKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ L L LKQ++ DL+ FG+IPEFVGR P+
Sbjct: 268 A---EIESKQVLDLGSL-------------------LKQIQPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E L++ILTEPKNA+ +QY+ LF +D V L EAL+ IA+ A+E+KTGAR
Sbjct: 306 VVTLEQLDEEALIKILTEPKNALTKQYKRLFEIDGVHLEIEEEALRLIAKKAIERKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E +++D+MYE+P DI V IT + + +N P +
Sbjct: 366 GLRGIVEGIMMDTMYEIPSRDDIEKVIITAEAITENKEPKIL 407
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFI 243
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
sp. GAI101]
gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
sp. GAI101]
Length = 421
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 145/244 (59%), Gaps = 38/244 (15%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA-----FLKQVEARDLIDFGMIPEFV 134
A D ++KDA +E DL+ FG+IPEFV
Sbjct: 270 A---------------------------DVRDKDARGIGEIFTDLEPEDLLKFGLIPEFV 302
Query: 135 GRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEK 194
GR P+L L+++ LV ILT+PKNA+++QYQ LF ++ LTF+ +AL AIA+ A+E+
Sbjct: 303 GRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDTQLTFTDDALAAIAKRAIER 362
Query: 195 KTGARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIG 253
KTGARGLR+I+E +LLD+M+E+PG D + V + E+ V+ + AP I E DK
Sbjct: 363 KTGARGLRSILEDILLDTMFELPGMDTVTEVVVNEEAVMSDAAPLMIHA-----EADKEP 417
Query: 254 AVPG 257
A G
Sbjct: 418 ATAG 421
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 213
>gi|358450533|ref|ZP_09160991.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
manganoxydans MnI7-9]
gi|385331925|ref|YP_005885876.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marinobacter
adhaerens HP15]
gi|311695075|gb|ADP97948.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marinobacter
adhaerens HP15]
gi|357225182|gb|EHJ03689.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
manganoxydans MnI7-9]
Length = 427
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 142/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT N+LF+ GA+ GLD++I R + +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTGNMLFICGGAFAGLDKVIRERTEKNSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA+V++++D K +K VE DL+ +G+IPEFVGR P+
Sbjct: 273 --------------------SASVASQDDAKNTGDVIKDVETEDLVKYGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L++E LV+ILTEPKN++ +QYQ LF M+ V+L F +AL+A+AR A+E+KTGAR
Sbjct: 313 VATLNELDEEALVQILTEPKNSLTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V I E + ++ P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEHDVTKVVIDESVISGDSEPFKI 414
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
nodulans ORS 2060]
gi|254763854|sp|B8IN27.1|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Methylobacterium nodulans ORS 2060]
Length = 423
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RNVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L RIL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+ES+LL++MY++PG D + V I + V P YI G
Sbjct: 368 GLRSILESILLETMYDLPGLDSVEQVVIGPEVVDGKARPLYIHG 411
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|326693800|ref|ZP_08230805.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc
argentinum KCTC 3773]
Length = 415
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 138/219 (63%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI +VP + + + E++QVDTTNILF+ GA+ G+D +I R E+ +GFG
Sbjct: 210 LLKMLEGTIASVPPQGGRKHPQQELIQVDTTNILFIVGGAFAGIDTIIKERLGERVIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E+A A+L D D LK V+ DLI FG+IPEF+GR PI
Sbjct: 270 SHANENA----AALDD-----------------DNILKYVQPEDLIKFGLIPEFIGRLPI 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L LVRILTEPKNA+I+QYQ L +D V L F P+AL+A+A LA+++ TGAR
Sbjct: 309 VTVLDELTVSDLVRILTEPKNALIKQYQALLGLDDVALEFQPDALEAMAELAIKRHTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E ++ D M+++P D+ V IT+ +VL P
Sbjct: 369 GLRSIIEHVMKDVMFDIPSRDDVAKVVITKASVLDGAQP 407
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENIILKLLQAANFDIEAAQRGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKM 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 214 LEGTIASVPPQGG---RKHPQQELIQVDTTNILFI 245
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKM 213
>gi|323489955|ref|ZP_08095176.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
donghaensis MPA1U2]
gi|323396251|gb|EGA89076.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
donghaensis MPA1U2]
Length = 423
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 143/238 (60%), Gaps = 26/238 (10%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL +LEGT +VP + + E +Q+DTTN+LF+ GA++G+D
Sbjct: 193 TSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGVD 252
Query: 65 RLISRRKNEKYLGFGA-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARD 123
++I RR K +GFGA P+ E ++ L Q+ D
Sbjct: 253 QIIKRRLGNKIIGFGADPNKEEIDEKS------------------------LLSQLIPED 288
Query: 124 LIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEA 183
L+ FG+IPEF+GR P+L L+++ LV ILTEPKNA+I+QYQ + +D V LTF PEA
Sbjct: 289 LLKFGLIPEFIGRLPVLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFDPEA 348
Query: 184 LQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
L AIARLA+E+KTGARGLR+I+E+ +L+ M+++P DI+ IT++TV + P I
Sbjct: 349 LVAIARLAIERKTGARGLRSIIENTMLEVMFDLPSREDIVECVITKETVDDSVPPKLI 406
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLIQAADYDVERAEKGIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P G ++P+ +I N +I
Sbjct: 212 LEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 243
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKI 211
>gi|297587290|ref|ZP_06945935.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
ATCC 53516]
gi|297575271|gb|EFH93990.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
ATCC 53516]
Length = 411
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP + + E +QVDT NILF+ GA++GL+++I +R K +GFG
Sbjct: 206 LLKIVEGTICNVPPQGGRKHPNQEYIQVDTKNILFIVGGAFDGLEKIIEKRTETKSIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E+ +R + L K + DLI FG+IPEFVGR P+
Sbjct: 266 ADLGENEHKRISEL----------------------FKDIRPEDLIKFGLIPEFVGRIPV 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ L++IL EPKNA+I+QYQ LF MD V+L F +AL+AIA+LA ++KTGAR
Sbjct: 304 LVTLDELDEQALIKILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E L++ M+E+P DI V +T+++VL+ P +
Sbjct: 364 GLRTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLV 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 160 NAMIQQ--YQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAI-------MESLLL 210
N++I++ I T +++DL E + ++++ G + L + S L+
Sbjct: 40 NSIIEEEFKDIDNTQERIDLPKPIEIKDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLM 99
Query: 211 DSMYEVPGSDILMVHITED--TVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVG--G 266
++ E+ S+IL+V T T+L T + I + F A+ L + G G
Sbjct: 100 NNDVELQKSNILLVGPTGSGKTLLAETL-AKILDVPF--------AIADATSLTEAGYVG 150
Query: 267 EGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLK 316
E V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +LK
Sbjct: 151 EDVENVILKLIQAADYDIEKAEQGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALLK 208
Query: 317 VSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ + P G ++PN YI N +I
Sbjct: 209 IVEGTICNVPPQGG---RKHPNQEYIQVDTKNILFI 241
>gi|456014396|gb|EMF48011.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planococcus
halocryophilus Or1]
Length = 423
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 143/238 (60%), Gaps = 26/238 (10%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL +LEGT +VP + + E +Q+DTTN+LF+ GA++G+D
Sbjct: 193 TSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGVD 252
Query: 65 RLISRRKNEKYLGFGA-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARD 123
++I RR K +GFGA P+ E ++ L Q+ D
Sbjct: 253 QIIKRRLGNKIIGFGANPNKEEIDEKS------------------------LLSQLIPED 288
Query: 124 LIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEA 183
L+ FG+IPEFVGR P+L L+++ LV ILTEPKNA+I+QYQ + +D V LTF PEA
Sbjct: 289 LLKFGLIPEFVGRLPVLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFEPEA 348
Query: 184 LQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
L AIA+LA+E+KTGARGLR+I+E+ +L+ M+++P DI+ IT++TV + P I
Sbjct: 349 LVAIAKLAIERKTGARGLRSIIENTMLEVMFDLPSREDIVECVITKETVADSVPPKLI 406
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLIQAADYDVERAEKGIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P G ++P+ +I N +I
Sbjct: 212 LEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 243
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKI 211
>gi|296112318|ref|YP_003626256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
catarrhalis RH4]
gi|295920012|gb|ADG60363.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
catarrhalis BBH18]
Length = 438
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 LASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|357463949|ref|XP_003602256.1| LCR [Medicago truncatula]
gi|355491304|gb|AES72507.1| LCR [Medicago truncatula]
Length = 335
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 138/211 (65%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGTIVNVPEK + + RG+ +Q+DT NILF+ GA+ L++
Sbjct: 69 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKT 128
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP A +A S+ + + S+ L VE+ DLI
Sbjct: 129 ISERRQDSSIGFGAPV--RAKMKAGSVTEASIASS-------------LLGTVESSDLIA 173
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEFVGRFPILV +L + L+++LTEPK+A+ +QY+ F ++ V L F+ A ++
Sbjct: 174 YGLIPEFVGRFPILVSLSALTENQLIQVLTEPKSALEKQYKKTFQINGVKLHFTESARKS 233
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
IAR A+ K TGARGLRAI+ES+L+D+MYE+P
Sbjct: 234 IARQAMSKNTGARGLRAIIESILVDAMYEIP 264
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 49 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 85
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 50 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 85
>gi|407768975|ref|ZP_11116352.1| ATP-dependent protease ATP-binding subunit ClpX [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407287895|gb|EKF13374.1| ATP-dependent protease ATP-binding subunit ClpX [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 421
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 129/198 (65%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIVGGAFAGLDKVISQRGKGSAIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L++VE DL+ FG+IPEF+GR P+
Sbjct: 270 ADVRSPEDRRTGEV----------------------LREVEPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV+ILTEPKNA+I+QYQ LF M+ V LTF P+AL IA+ A+E+KTGAR
Sbjct: 308 LATLEDLDEDALVKILTEPKNALIKQYQRLFDMEDVKLTFQPDALVGIAKKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+IME +LLD+M+++P
Sbjct: 368 GLRSIMEGILLDTMFDLP 385
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 245
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli CFN
42]
gi|190891273|ref|YP_001977815.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
CIAT 652]
gi|417110579|ref|ZP_11963749.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli
CNPAF512]
gi|421587069|ref|ZP_16032522.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium sp.
Pop5]
gi|123512322|sp|Q2K9U6.1|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238692521|sp|B3PVY5.1|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
etli CFN 42]
gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
etli CIAT 652]
gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli
CNPAF512]
gi|403708547|gb|EJZ23213.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium sp.
Pop5]
Length = 425
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|424890862|ref|ZP_18314461.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|424894552|ref|ZP_18318126.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|424914595|ref|ZP_18337959.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|238066658|sp|B5ZY09.1|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|392850771|gb|EJB03292.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|393173080|gb|EJC73125.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393178779|gb|EJC78818.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM2297]
Length = 425
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
SK209-2-6]
gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
SK209-2-6]
Length = 422
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 141/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ D++ + +E DL+ FG+IPEFVGR P+
Sbjct: 271 ADVRDN----------------------DDRGVGEIFQDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT PKNA+++QYQ LF +++ +L F+PEAL+AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALVTILTLPKNALVKQYQRLFELEETELDFTPEALKAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+IME +LLD+M+++PG D + V + E+ V + P I
Sbjct: 369 GLRSIMEDILLDTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIHA 412
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|416243367|ref|ZP_11633888.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC7]
gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC7]
Length = 438
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 LASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter
autotrophicus Py2]
gi|238686732|sp|A7ILC7.1|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter
autotrophicus Py2]
Length = 422
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 28/237 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R K +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISSRSKGSTSIGF 269
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A V+ ED + + F ++VE DL+ +G+IPEF+GR P
Sbjct: 270 ---------------------QAKVAPPEDRRPGEVF-REVEPEDLLKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L L++E L +IL+EPKNA+++QYQ LF M+ VDLT EAL AIAR A+E+KTGA
Sbjct: 308 VLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
RGLR+IMES+LLD+M+++PG + + V I+ + V ++ P YI + D V GA
Sbjct: 368 RGLRSIMESILLDTMFDLPGLEGVEEVVISREVVEQSARPLYI----YADRVGDAGA 420
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|168042097|ref|XP_001773526.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675228|gb|EDQ61726.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 433
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 139/200 (69%), Gaps = 15/200 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +QVDT +ILF+ GA+ L++ I+ R+ + +GFG
Sbjct: 203 LLKMLEGTVVNVPEKGARKHPRGDHIQVDTKDILFICGGAFIELEKTIAERRQDSSIGFG 262
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L + AAV++ + L+ VE+ DLI +G+IPEF+GRFP+
Sbjct: 263 APV--RANMRVNKLVN-----AAVTS--------SLLELVESSDLISYGLIPEFIGRFPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEP+NA+ +QY+ +F M+ V L ++ AL+ IA+ A+ K TGAR
Sbjct: 308 LVSLAALNEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEGALRRIAQKAMIKNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGS 219
GLR+IME+LL DSMY+VP S
Sbjct: 368 GLRSIMEALLTDSMYQVPDS 387
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 237 PSYIRGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
P+ +GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 166 PAAQQGIVYIDEVDKITKKAENMNISRDVSGEGVQQALLKM 206
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A F GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 147 GEDVESILYKLLMAAEFNVPAAQQGIVYIDEVDKITKKAENMNISRDVSGEGVQQALLKM 206
>gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium
vannielii ATCC 17100]
gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodomicrobium vannielii ATCC 17100]
Length = 422
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++I++R +GFG
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIIAQRGKSSSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T ED++ L+ VE DL+ FG+IPEF+GR P+
Sbjct: 271 AKVTS----------------------EDDRRTGEILRGVEPEDLLRFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+IL+EPKNA+++QYQ LF M+ V LT S EAL+++AR A+E+KTGAR
Sbjct: 309 LATLEDLDEVALVKILSEPKNALVKQYQRLFDMEGVQLTLSNEALKSVARKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLDSM+E+P + V I+ + + N P I
Sbjct: 369 GLRSIMEAILLDSMFELPSLKGVEEVVISPEVIEGNAKPLRI 410
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQAADYNVDRAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
fredii NGR234]
gi|254763858|sp|C3MA45.1|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
fredii NGR234]
Length = 425
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAKRAIIRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|389690969|ref|ZP_10179862.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Microvirga
sp. WSM3557]
gi|388589212|gb|EIM29501.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Microvirga
sp. WSM3557]
Length = 422
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V LTF EAL IAR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVSLTFQDEALSMIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+IME +LL++MY++PG D + V I + V P +I G
Sbjct: 368 GLRSIMEGILLETMYDLPGLDSVEQVVIGPEVVEGKAKPLFIHG 411
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|378825566|ref|YP_005188298.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
fredii HH103]
gi|365178618|emb|CCE95473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
fredii HH103]
Length = 425
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAKRAIIRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|445423514|ref|ZP_21436679.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
sp. WC-743]
gi|444755551|gb|ELW80131.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
sp. WC-743]
Length = 436
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTANILFICGGAFSGLEKVVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TADVKNKDDTKKVSELFRQVEAADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 310 IATLEELDEEALMQILTEPKNALTRQYQYLFEMENVDLLFEDSALRAIAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P SDI V I E + P +
Sbjct: 370 GLRSILENVLLETMYDLPSRSDIGTVIINEAVINDKAVPEF 410
>gi|403051410|ref|ZP_10905894.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
bereziniae LMG 1003]
Length = 436
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTANILFICGGAFSGLEKVVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TADVKNKDDTKKVSELFRQVEAADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 310 IATLEELDEEALMQILTEPKNALTRQYQYLFEMENVDLLFEDSALRAIAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P SDI V I E + P +
Sbjct: 370 GLRSILENVLLETMYDLPSRSDIGTVIINEAVINDKAVPEF 410
>gi|297616503|ref|YP_003701662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Syntrophothermus lipocalidus DSM 12680]
gi|297144340|gb|ADI01097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Syntrophothermus lipocalidus DSM 12680]
Length = 417
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DT+NILF+ GA+ G+D++I R +K +GFG
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTSNILFICGGAFEGIDKIIQNRVGQKSMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FG+IPEFVGR PI
Sbjct: 269 ADIKTKKEKKIGEI----------------------LEQILPQDLLKFGLIPEFVGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ LVRILTEPKNA+++QYQ LF MD V+L F+ +AL+AIA A+ + TGAR
Sbjct: 307 IVTLDALDESALVRILTEPKNALVRQYQKLFDMDGVNLEFTDDALKAIAEEAMRRSTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++LD MYE+P +D+ +T+D + K P
Sbjct: 367 GLRAIVEDVMLDVMYEIPSRADVTKCVVTKDVIQKKEKP 405
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDIEKAEKGIVYIDEIDKIARKTDNPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTSNILFIC 245
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 KGIVYIDEIDKIARKTDNPSIT--RDVSGEGVQQALLKI 212
>gi|359428059|ref|ZP_09219101.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
sp. NBRC 100985]
gi|358236510|dbj|GAB00640.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
sp. NBRC 100985]
Length = 436
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 145/221 (65%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF+M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFSMEDVDLVFDDSALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSY 239
GLR+I+E++LL++MY++P + I ++ V+ TA P++
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVIVDEAVINGTAKPTF 409
>gi|333922903|ref|YP_004496483.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748464|gb|AEF93571.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 416
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 205 LLKILEGTIASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIQNRTGKKTMGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +R + ++ L Q+ DL+ FG+IPEFVGR P+
Sbjct: 265 A---EIQSKREQKIGEI-------------------LAQILPEDLLKFGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRILTEPKNA+ +QY+ LF +D V L P+AL+ +A+ AL++KTGAR
Sbjct: 303 IVTLDALDEDALVRILTEPKNALTKQYEKLFELDGVSLEIQPDALREVAKEALKRKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME ++L+ MY++P DI V IT D +LK P I
Sbjct: 363 GLRAIMEEVMLNIMYDIPSREDISKVVITRDAILKKGEPLLI 404
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTIASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|408417897|ref|YP_006759311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfobacula
toluolica Tol2]
gi|405105110|emb|CCK78607.1| ClpX: ATP-dependent Clp protease, ATP-binding subunit
[Desulfobacula toluolica Tol2]
Length = 419
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 139/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI ++P K + + + V+VDT+NILFV G + GL+++I RR +K +GFG
Sbjct: 212 LLKIIEGTIASIPPKGGRKHPQQDYVKVDTSNILFVCGGTFTGLEKVIERRITQKTMGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + L L+Q++ DLI FG+IPEF+GR PI
Sbjct: 272 AKIAEKKDKNIGEL----------------------LEQLKPEDLIRFGLIPEFLGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ LN++ LV+ILTEPKNA+++QYQ LF ++ VDL F+ EAL+A+A+ A+++K+GAR
Sbjct: 310 ITSIGELNEKSLVKILTEPKNALVKQYQELFKVEGVDLQFTDEALEAMAKEAVKRKSGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLRAIME +LD MYE+P + + + E+ VLKN P
Sbjct: 370 GLRAIMEETMLDIMYEIPSKENVQECVVGEEVVLKNEDP 408
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI G P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQKGIIYIDEIDKISQRGDNPSIT--RDVSGEGVQQALLKIIEGTIASIPPKGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P Y+ N ++
Sbjct: 232 PQQDYVKVDTSNILFVC 248
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G P I RDV GEGVQQ +LK+
Sbjct: 179 KGIIYIDEIDKISQRGDNPSIT--RDVSGEGVQQALLKI 215
>gi|237755490|ref|ZP_04584112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237692354|gb|EEP61340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 408
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ GL+ +I +R +K +GFG
Sbjct: 206 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++S +EKD L V+ DLI FG+IPEF+GR P+
Sbjct: 266 A--------------DIKSKS---------EEKD-LLSLVQPEDLIKFGLIPEFLGRIPV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+LTEPKNA+I+QY+ L +D ++L F+ +AL+ IAR A+++KTGAR
Sbjct: 302 IATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALRKIAREAIKRKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLRAI+E L+LD MYE P L V I +D VLK P Y+
Sbjct: 362 GLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVVLKQKPPIYV 403
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYP 337
A GIV++DEVDKI G + RDV GEGVQQ +LK+ + P G ++P
Sbjct: 170 AEKGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGG---RKHP 226
Query: 338 NTGYIWYRYPNTGYIW 353
+ +I N +I
Sbjct: 227 HQEFIQIDTTNILFIL 242
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
+GIV++DEVDKI G + RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKI 209
>gi|255325487|ref|ZP_05366589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Corynebacterium tuberculostearicum SK141]
gi|255297425|gb|EET76740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Corynebacterium tuberculostearicum SK141]
Length = 431
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 23/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DT+NILF+ +GA+ GLD++I+ R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDQVIADRVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +L + D +EK QV DL+ FG+IPEF+GR P+
Sbjct: 283 A--------------NLDTK--------DEREKVDLFSQVRPEDLVKFGLIPEFIGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++LTEPKN++++QY LF MD +L P AL AIA LALE+KTGAR
Sbjct: 321 VATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLRAIME LL+ MY++P DI VHIT + V + P +
Sbjct: 381 GLRAIMEELLVPVMYDLPDREDIATVHITSECVTEGAEPQF 421
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 167 GEDVENILLKLLQAADFDVERAQRGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALL 224
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 225 KILEGTVAAIPPQGG---RKHPNQEFIQLDTSNILFI 258
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 190 RGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALLKI 226
>gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim
5]
Length = 333
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 121 LLKVMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 180
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 181 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 218
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 219 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 278
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 279 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 320
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 65 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSIT--RDVSGEGVQQALL 122
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
KV + P G ++P ++ N +I
Sbjct: 123 KVMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 157
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LKV
Sbjct: 88 RGIVYIDEVDKISRKSDNPSIT--RDVSGEGVQQALLKV 124
>gi|425744506|ref|ZP_18862562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-323]
gi|425490661|gb|EKU56957.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-323]
Length = 436
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 145/221 (65%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ AL++ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFDESALRAVAKKALDRNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSY 239
GLR+I+E++LL++MY++P + I ++ V+ TA P++
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVIVDEAVINGTAKPTF 409
>gi|311741279|ref|ZP_07715103.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303449|gb|EFQ79528.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 431
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 23/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DT+NILF+ +GA+ GLD++I+ R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDQVIADRVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +L + D +EK QV DL+ FG+IPEF+GR P+
Sbjct: 283 A--------------NLDTK--------DEREKVDLFSQVRPEDLVKFGLIPEFIGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++LTEPKN++++QY LF MD +L P AL AIA LALE+KTGAR
Sbjct: 321 VATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLRAIME LL+ MY++P DI VHIT + V + P +
Sbjct: 381 GLRAIMEELLVPVMYDLPDREDIATVHITRECVTEGAEPQF 421
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 167 GEDVENILLKLLQAADFDVERAQRGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALL 224
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 225 KILEGTVAAIPPQGG---RKHPNQEFIQLDTSNILFI 258
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 190 RGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALLKI 226
>gi|406909849|gb|EKD50015.1| hypothetical protein ACD_62C00680G0003 [uncultured bacterium]
Length = 417
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP K + + + +QVDTTNILF+ GA+ GLD+LIS+R +EK +GFG
Sbjct: 209 LLKIIEGTIANVPPKGGRKHPQQDFIQVDTTNILFICGGAFFGLDQLISKRLSEKQMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S V +DN + L +VE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------SKLVEKNKDNLGE--ILAKVETEDLLKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L+++ L+ ILTEPKNA+++QYQ LF + V LTF+PEAL IA+ A ++K+GAR
Sbjct: 307 HATLGELDEKALISILTEPKNALVKQYQRLFEFENVKLTFTPEALNGIAKAANKRKSGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+IME+++LD MY++P ++I V + ED V + P
Sbjct: 367 GLRSIMENIMLDVMYDIPSQTNIEEVIVNEDVVNGKSNP 405
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L + A F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILNLLQNADFDKTKAERGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P +I N +I
Sbjct: 211 KIIEGTIANVPPKGG---RKHPQQDFIQVDTTNILFIC 245
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKI 212
>gi|408785975|ref|ZP_11197715.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium lupini
HPC(L)]
gi|424910123|ref|ZP_18333500.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392846154|gb|EJA98676.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408488164|gb|EKJ96478.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium lupini
HPC(L)]
Length = 425
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYI 412
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
TrichSKD4]
gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
TrichSKD4]
Length = 431
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R + +GF
Sbjct: 220 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIADRGTQTSIGF- 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A ED + + F +E DL+ FG+IPEFVGR P+
Sbjct: 279 --------------------KANVQAPEDRRVGELF-SVMEPEDLLKFGLIPEFVGRLPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV IL EPKNA+++QYQ LF M++V+LTF EAL+AIAR A+E+KTGAR
Sbjct: 318 IATLEDLDEDALVTILVEPKNALVKQYQRLFEMEQVELTFHEEALRAIARKAIERKTGAR 377
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+MYE+PG + V I+ + V + P YI
Sbjct: 378 GLRSILEAILLDTMYELPGLKGVKEVVISPEVVAGQSRPLYI 419
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 164 GEDVENIILKLLQASDYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 221
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 222 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 256
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 187 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKL 223
>gi|15888589|ref|NP_354270.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
fabrum str. C58]
gi|335035105|ref|ZP_08528448.1| ATP-dependent protease ATP-binding subunit [Agrobacterium sp. ATCC
31749]
gi|23813866|sp|Q8UFY5.1|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
fabrum str. C58]
gi|333793536|gb|EGL64890.1| ATP-dependent protease ATP-binding subunit [Agrobacterium sp. ATCC
31749]
Length = 425
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYI 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
paucivorans DSM 12260]
gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
paucivorans DSM 12260]
Length = 428
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 144/223 (64%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP K + + +Q+DT NILF+ GA++GL+ +I+RR K +GFG
Sbjct: 219 LLRILEGTLSNVPPKGGRKHPNQDFIQMDTRNILFICGGAFDGLEPIIARRTRRKVIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+S+ +D +E++A + ++ DL+ +G IPEFVGR P+
Sbjct: 279 G---------------------ELSSGQDAEERNALFRAIQPEDLMSYGFIPEFVGRLPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP SL++ L RIL EPKNA+++QYQ +F+++ V+L F+ EA++A+AR ALE+KTGAR
Sbjct: 318 VVPLDSLDENALTRILREPKNALLRQYQKVFSLEGVELEFTLEAVRAVARRALERKTGAR 377
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSYI 240
LR+I+ES +L+ MY++P + + V I ED +L +P Y+
Sbjct: 378 ALRSILESTMLELMYDLPSQAARVGKVRIDEDVILGTGSPVYL 420
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +L++ L P G ++
Sbjct: 184 AERGIIYIDEIDKISRKSESPSIT--RDVSGEGVQQALLRILEGTLSNVPPKGG---RKH 238
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 239 PNQDFIQMDTRNILFIC 255
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +L++
Sbjct: 186 RGIIYIDEIDKISRKSESPSIT--RDVSGEGVQQALLRI 222
>gi|417860287|ref|ZP_12505343.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
tumefaciens F2]
gi|418296069|ref|ZP_12907913.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
tumefaciens CCNWGS0286]
gi|338823351|gb|EGP57319.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
tumefaciens F2]
gi|355539501|gb|EHH08739.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
tumefaciens CCNWGS0286]
Length = 425
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYI 412
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|398353147|ref|YP_006398611.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
fredii USDA 257]
gi|390128473|gb|AFL51854.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
fredii USDA 257]
Length = 425
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRAPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAKRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|147791350|emb|CAN75136.1| hypothetical protein VITISV_040753 [Vitis vinifera]
Length = 600
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 147/230 (63%), Gaps = 19/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 344 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 403
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A++ AAV++ + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 404 APVR-------ANMRTGGPTXAAVAS--------SLLETVESSDLISYGLIPEFVGRFPI 448
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L + LV +LTEPKNA+ +QY+ +F M+ V L F+ AL+ I+R A K TGAR
Sbjct: 449 LVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAXSKNTGAR 508
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVLKNTAPSYIRGIVF 245
GLR+ +E++L+B+MYE+P G+DI+ + +D + + + I++
Sbjct: 509 GLRSXLENILMBAMYEIPDVRTGNDIIDAVVVDDEAVGSDGHGFGAKILY 558
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 311 QGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 347
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A + GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 288 GEDVESILYKLLMVADYNVVAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 347
>gi|357052922|ref|ZP_09114026.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
clostridioforme 2_1_49FAA]
gi|355386347|gb|EHG33387.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
clostridioforme 2_1_49FAA]
Length = 439
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ +R + +GF
Sbjct: 213 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIVEQRLSAGSIGFN 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T +++ D LK+VE +DL FG+IPEF+GR P+
Sbjct: 273 AEVTN----------------------KNDLNIDELLKKVEPKDLTKFGLIPEFIGRVPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L +E +VRIL+EPKNA+++QYQ LF +D V L F+ EAL+ IA+LA+++K GAR
Sbjct: 311 MVSLEQLTKEAMVRILSEPKNALMRQYQKLFELDNVKLEFTREALEEIAQLAVDRKIGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+++D MYE+P D I + IT D V K P +
Sbjct: 371 GLRSILESVMMDLMYEIPSDDSIGICTITRDVVRKAGQPELV 412
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 217 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 249
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
>gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
BAA-613]
gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
BAA-613]
Length = 416
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ +R + +GF
Sbjct: 190 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIVEQRLSAGSIGFN 249
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++AN+ ++ D LK+VE +DL FG+IPEF+GR P+
Sbjct: 250 A--------------EVANK--------NDLNIDELLKKVEPKDLTKFGLIPEFIGRVPV 287
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L ++ +VRIL+EPKNA+++QYQ LF +D V L F+ EAL+ IA+LA+++K GAR
Sbjct: 288 MVSLEQLTKDAMVRILSEPKNALMRQYQKLFELDNVKLEFTQEALEEIAQLAVDRKIGAR 347
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+++D MYE+P D I + IT D V K P +
Sbjct: 348 GLRSILESVMMDLMYEIPSDDSIGICTITRDVVKKAGQPELV 389
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 134 GEDVENILLKLIQAADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 193
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 194 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 226
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 158 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 193
>gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
sp. SE45]
gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
sp. SE45]
Length = 421
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E D + K +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVREP----------------------DERGTGEVFKDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ LF M+ +L+F+ +AL AIA+ A+E+KTGAR
Sbjct: 308 IATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTELSFTDDALSAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG D+ V + E+ V P I
Sbjct: 368 GLRSILEGILLDTMFELPGMDDVTEVVVNEEAVTSEAKPLMI 409
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|416216368|ref|ZP_11623692.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 7169]
gi|416236088|ref|ZP_11630454.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 12P80B1]
gi|416245838|ref|ZP_11634733.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC8]
gi|326561828|gb|EGE12163.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 7169]
gi|326563374|gb|EGE13639.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 12P80B1]
gi|326571925|gb|EGE21930.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC8]
Length = 438
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|325292626|ref|YP_004278490.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Agrobacterium
sp. H13-3]
gi|418406779|ref|ZP_12980098.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
tumefaciens 5A]
gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
sp. H13-3]
gi|358007272|gb|EHJ99595.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
tumefaciens 5A]
Length = 425
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGIARPLYI 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|416156276|ref|ZP_11604408.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 101P30B1]
gi|416220782|ref|ZP_11625591.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 103P14B1]
gi|421779132|ref|ZP_16215626.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
catarrhalis RH4]
gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 103P14B1]
gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 101P30B1]
gi|407813573|gb|EKF84353.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
catarrhalis RH4]
Length = 438
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 267 EGVQQGMLKVS----ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVST 319
E + Q +L+ S A GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 184 ENIVQKLLQASDYDVQKAEKGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIE 241
Query: 320 SYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++P I N
Sbjct: 242 GTVANIPPQGG---RKHPRQEMIQVDTSN 267
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|410446737|ref|ZP_11300840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86E]
gi|409980409|gb|EKO37160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86E]
Length = 415
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 23/218 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + E +Q+DT+NILF+ GA++G+D +I R ++ +GFG
Sbjct: 206 LLKLIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGIDEVIKHRTDKSGIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S+ D + S + ++ +E DL+ FG+IPEFVGR P+
Sbjct: 266 A-----------SVKDTQSTSQKI------------IETLEPEDLVKFGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L++ LVRIL EPKNA++ QY+ LF +D V+L F EAL IA+ AL++KTGAR
Sbjct: 303 ISTLHELDESALVRILQEPKNALVNQYKYLFNIDDVELDFRTEALVEIAKKALQRKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
GLR+IME LL+D+M+E+P D+ V + E+ VL T P
Sbjct: 363 GLRSIMEELLMDTMFELPNVDLEKVIVDENAVLHATDP 400
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
AA GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 171 AALGIVYIDEIDKIARKSDNPSIT--RDVSGEGVQQALLKLIEGTVASIPPQGG---RKH 225
Query: 337 PNTGYIWYRYPNTGYIW 353
P +I N +I
Sbjct: 226 PQQEFIQIDTSNILFIC 242
>gi|416253184|ref|ZP_11638207.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis O35E]
gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis O35E]
Length = 438
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 267 EGVQQGMLKVS----ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVST 319
E + Q +L+ S A GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 184 ENIVQKLLQASDYDVQKAEKGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIE 241
Query: 320 SYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++P I N
Sbjct: 242 GTVANIPPQGG---RKHPRQEMIQVDTSN 267
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 76 LGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQV-----EARDLIDFGMI 130
LG + T+S+GR + AD ++QS + E + +KD +L +V E R +D +I
Sbjct: 42 LGDWSKPTKSSGRSSDRSADTSHQSDVQLSIETDSDKDEWLNKVLPKPKELRAHLDDYVI 101
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNA---MIQQYQILF-------------TMDK 174
+ V + + V ++ + L ++ + K+ + + IL T+ K
Sbjct: 102 GQDVAKKALAVAVYNHYKRL--KVANDKKDTDGVELSKSNILLIGPTGSGKTLLAQTLAK 159
Query: 175 -VDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLK 233
+D+ F+ A A E + I++ LL S Y+V ++
Sbjct: 160 MLDVPFA----MADATTLTEAGYVGEDVENIVQKLLQASDYDVQKAE------------- 202
Query: 234 NTAPSYIRGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 -------KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|416248952|ref|ZP_11636286.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis CO72]
gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis CO72]
Length = 438
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 267 EGVQQGMLKVS----ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVST 319
E + Q +L+ S A GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 184 ENIVQKLLQASDYDVQKAEKGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIE 241
Query: 320 SYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++P I N
Sbjct: 242 GTVANIPPQGG---RKHPRQEMIQVDTSN 267
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|416237863|ref|ZP_11631218.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC1]
gi|326568951|gb|EGE19020.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis BC1]
Length = 438
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 203 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 239
>gi|302379712|ref|ZP_07268197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna ACS-171-V-Col3]
gi|303234237|ref|ZP_07320883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna BVS033A4]
gi|417926737|ref|ZP_12570128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna SY403409CC001050417]
gi|302312619|gb|EFK94615.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna ACS-171-V-Col3]
gi|302494778|gb|EFL54538.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna BVS033A4]
gi|341588489|gb|EGS31887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
magna SY403409CC001050417]
Length = 411
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP + + E +QVDT NILF+ GA+ GL+++I RR K +GFG
Sbjct: 206 LLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGAFEGLEKIIERRTETKSIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ ++ + L K + DLI FG+IPEFVGR P+
Sbjct: 266 ADLGDNEHKKISEL----------------------FKDIRPEDLIKFGLIPEFVGRIPV 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ L+RIL EPKNA+I+QYQ LF MD V+L F +AL+AIA+LA ++KTGAR
Sbjct: 304 LVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E L++ M+E+P DI V +T+++VL+ P +
Sbjct: 364 GLRTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLV 405
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 150 GEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALL 207
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN YI N +I
Sbjct: 208 KIVEGTICNVPPQGG---RKHPNQEYIQVDTRNILFI 241
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 173 QGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALLKI 209
>gi|418939669|ref|ZP_13493059.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhizobium sp.
PDO1-076]
gi|375053610|gb|EHS49999.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhizobium sp.
PDO1-076]
Length = 425
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVTSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+ + L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IA A+ +KTGAR
Sbjct: 311 LATLEDLDADALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIALKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I++D V ++ P YI
Sbjct: 371 GLRSIMEKILLDTMFELPELEGVREVVISDDVVKGSSRPLYI 412
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|301118793|ref|XP_002907124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
infestans T30-4]
gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
infestans T30-4]
Length = 692
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 146/230 (63%), Gaps = 20/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEG++VNVPEK + RGE + +DTTNILF+ GA+ GL++ ++RR + +GFG
Sbjct: 466 LLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFG 525
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + N +D+ + L Q E DL+ +G+IPEF+GRFP+
Sbjct: 526 A--------------QMPNMRL-----KDSNQIGQLLSQAEPEDLVSYGLIPEFIGRFPM 566
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ LV++LTEPKN++++QY+ LF + V+ + AL+A+A AL K TGAR
Sbjct: 567 LVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGAR 626
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
GLR+I E L+++M+++P +D+ V++ E+ +L + P IRG + LDE
Sbjct: 627 GLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGHKRPVLIRGEMTLDE 676
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 433 RGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKI 469
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 410 GEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKI 469
>gi|315038089|ref|YP_004031657.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
amylovorus GRL 1112]
gi|325956542|ref|YP_004291954.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
acidophilus 30SC]
gi|312276222|gb|ADQ58862.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
amylovorus GRL 1112]
gi|325333107|gb|ADZ07015.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
acidophilus 30SC]
Length = 423
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + E D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------EADKVDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ LN E LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MYE P DI V +T+D + K+ P +R
Sbjct: 365 GLRTIIENSIMDIMYETPSEEDIESVEVTKDVITKHAKPRVVR 407
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDIERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 243
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|150388890|ref|YP_001318939.1| ATP-dependent protease ATP-binding subunit ClpX [Alkaliphilus
metalliredigens QYMF]
gi|229889848|sp|A6TM62.1|CLPX_ALKMQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|149948752|gb|ABR47280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
metalliredigens QYMF]
Length = 420
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+++LI +R + +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKLIQKRTGKTSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + D+ LKQ++ DL+ FG+IPEFVGR P+
Sbjct: 267 ADV------KSKVVKDIG----------------GLLKQIQPEDLLKFGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++ L+ ILTEPKNA+++QY+ LF +D V++ F EAL+ IA A+E+KTGAR
Sbjct: 305 IVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEFEGEALKLIAEKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E L++D MY+VP DI V +T+DTV+ + P+ I
Sbjct: 365 GLRGIVEGLMMDIMYDVPSRDDIEKVIVTKDTVVNASLPTII 406
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|385817430|ref|YP_005853820.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
amylovorus GRL1118]
gi|327183368|gb|AEA31815.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
amylovorus GRL1118]
Length = 423
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + E D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------EADKVDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ LN E LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MYE P DI V +T+D + K+ P +R
Sbjct: 365 GLRTIIENSIMDIMYETPSEEDIESVEVTKDVITKHAKPRVVR 407
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDIERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 243
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|188996269|ref|YP_001930520.1| ATP-dependent protease ATP-binding subunit ClpX
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931336|gb|ACD65966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 408
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 139/222 (62%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ GL+ +I +R +K +GFG
Sbjct: 206 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++S E+ L V+ DLI FG+IPEF+GR P+
Sbjct: 266 A--------------DIKSKS----------EEKELLSLVQPEDLIKFGLIPEFLGRIPV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+LTEPKNA+I+QY+ L +D ++L F+ +AL+ IAR A+++KTGAR
Sbjct: 302 IATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALREIAREAIKRKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLRAI+E L+LD MYE P L V I +D VLK P Y+
Sbjct: 362 GLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVVLKQKPPIYV 403
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYP 337
A GIV++DEVDKI G + RDV GEGVQQ +LK+ + P G ++P
Sbjct: 170 AEKGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGG---RKHP 226
Query: 338 NTGYIWYRYPNTGYIW 353
+ +I N +I
Sbjct: 227 HQEFIQIDTTNILFIL 242
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
+GIV++DEVDKI G + RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKI 209
>gi|348026430|ref|YP_004766235.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megasphaera
elsdenii DSM 20460]
gi|341822484|emb|CCC73408.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megasphaera
elsdenii DSM 20460]
Length = 412
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ VP + + EM+Q+DTTNILF+ GA++G+D+ I R +K +GFG
Sbjct: 208 LLKILEGTVAGVPPQGGRKHPHQEMLQIDTTNILFICGGAFDGIDKTILNRTTDKNMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++S ++ LK++ DL FG+IPE +GR P+
Sbjct: 268 A--------------DIHSKS--------EHSMESLLKEIIPTDLQKFGLIPELIGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV + L+++ +V ILTEPKNA+++QYQ + +MD VDL F+PEALQAIA+ AL + TGAR
Sbjct: 306 LVTLNPLDEDAMVHILTEPKNALVKQYQKMLSMDDVDLEFTPEALQAIAKEALRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M++VP D+ +TE V + P +
Sbjct: 366 GLRSIIERIMLDVMFDVPSRDDVSKCVVTEKCVKEGAEPDLV 407
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A A GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENCLLKLIQAADYDIAKAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ + N +I
Sbjct: 210 KILEGTVAGVPPQGG---RKHPHQEMLQIDTTNILFIC 244
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|416228845|ref|ZP_11627777.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 46P47B1]
gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
catarrhalis 46P47B1]
Length = 438
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + R EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 236 LLKLIEGTVANIPPQGGRKHPRQEMIQVDTSNILMIVGGAFAGLDKVIRQRTEKTGIGF- 294
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A++++ + F ++VEA DLI FG+IPE +GR P+
Sbjct: 295 --------------------HADVKAQDESSITELF-REVEAEDLIKFGLIPELIGRLPV 333
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LTF PEAL AIA+ A E+KTGAR
Sbjct: 334 IASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAKRAQERKTGAR 393
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ L+D+MYE+P +DI V +T+ + P
Sbjct: 394 GLRSIIENALMDTMYELPSMTDIAEVIVTKGVIESGKPP 432
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 267 EGVQQGMLKVS----ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVST 319
E + Q +L+ S A GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 184 ENIVQKLLQASDYDVQKAEQGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIE 241
Query: 320 SYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++P I N
Sbjct: 242 GTVANIPPQGG---RKHPRQEMIQVDTSN 267
>gi|389877839|ref|YP_006371404.1| ATP-dependent protease ATP-binding subunit [Tistrella mobilis
KA081020-065]
gi|388528623|gb|AFK53820.1| ATP-dependent protease ATP-binding subunit [Tistrella mobilis
KA081020-065]
Length = 422
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 132/201 (65%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I+ R + +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIVGGAFVGLDRIINDRGRKTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR+ + L+QVE DL+ FG+IPEFVGR P+
Sbjct: 270 ANVEPVETRRSGDV----------------------LRQVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L+++ LV+ILT+PKNA+++QYQ LF ++ V LTFS +AL AIA A+E+KTGAR
Sbjct: 308 IATLHDLDRDALVQILTKPKNALLKQYQRLFELENVHLTFSDDALGAIAERAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLRAIME +LLD+M+++P D
Sbjct: 368 GLRAIMEEILLDTMFDLPDLD 388
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 245
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|389774766|ref|ZP_10192885.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
spathiphylli B39]
gi|388438365|gb|EIL95120.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
spathiphylli B39]
Length = 430
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 140/221 (63%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GLD++I +R +GF
Sbjct: 213 LLKLIEGTLASVPPQGGRKHPQQEFLQVDTKNILFICGGAFSGLDKVIQQRSETTGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E + L +VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKERTENLGKVLAEVEPADLVRFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +Q++ LF M++V+L F PEALQAIAR AL++KTGAR
Sbjct: 312 VATLDELDEAALVKILTEPKNAVTKQFRKLFEMEEVELEFRPEALQAIARKALKRKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR I+E +LLD+MYE+P + + + +D V++ A Y+
Sbjct: 372 GLRTILEQVLLDTMYELPSLEHVSKVVVDDAVIEGQAEPYL 412
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 178 AQSGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGTLASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTKNILFIC 249
>gi|336395735|ref|ZP_08577134.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
farciminis KCTC 3681]
Length = 415
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 143/222 (64%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + E++Q+DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 210 LLKILEGTIASVPPQGGRKHPQQELIQIDTTNILFIVGGAFDGIEQIVKNRLGDKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A Q A+V AEE N +KQ+ DL+ FG+IPEF+GR PI
Sbjct: 270 A-----------------EQKASV-AEEKN-----LMKQIIPEDLMKFGIIPEFIGRIPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L + LV ILT+PKNA+++QY+ L +D VDL F+ +AL+ IA++++E+ TGAR
Sbjct: 307 VTALDKLTESDLVEILTKPKNALVKQYKELLGLDGVDLVFTDDALKEIAKMSIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LD+M+++PG DI V +T+D V K P I
Sbjct: 367 GLRSILEETMLDTMFDIPGRDDIETVKVTKDAVRKVKEPEVI 408
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADFDVDKAEHGIVYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 214 LEGTIASVPPQGG---RKHPQQELIQIDTTNILFI 245
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIVYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 135/217 (62%), Gaps = 22/217 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GF
Sbjct: 212 LLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+AV + DN+ L+ +E+ DL+ FG+IPEF+GR P+
Sbjct: 271 ---------------------SAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L+RIL+EPKNA+I+QYQ LF M+ V+L F +AL+ IAR A+ KTGAR
Sbjct: 310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+M+E+P + I D V+K A
Sbjct: 370 GLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKA 406
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTIASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacterales bacterium Y4I]
gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacterales bacterium Y4I]
Length = 422
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 27/226 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A DN E+ K +E DL+ FG+IPEFVGR
Sbjct: 271 ADV------------------------RDNDERGVGEVFKDLEPEDLLKFGLIPEFVGRL 306
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P+L L++E LV ILTEPKNA+++QYQ LF ++ +L F+ EAL+AIAR A+++KTG
Sbjct: 307 PVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDTELDFTDEALKAIARKAIQRKTG 366
Query: 198 ARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
ARGLR+IME +LL++M+++PG D + V + E+ V + P I
Sbjct: 367 ARGLRSIMEDILLNTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIHA 412
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 176 AQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit ClpX [Paracoccus
denitrificans PD1222]
gi|166214797|sp|A1B1H7.1|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus
denitrificans PD1222]
Length = 421
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 134/201 (66%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRNKGTAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV E+D+K KQ+E DL+ FG+IPEFVGR P+
Sbjct: 269 A---------------------AVK-EDDDKGVGELFKQLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILT+PKNA+++QYQ LF ++ V LTF+ +AL AIA+ A+++KTGAR
Sbjct: 307 IATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLR+IME +LLD+M+++PG D
Sbjct: 367 GLRSIMEDILLDTMFDLPGMD 387
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|402758021|ref|ZP_10860277.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
NCTC 7422]
Length = 436
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 144/221 (65%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ AL++ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLVFDESALRAVAKKALDRNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSY 239
GLR+I+E++LL++MY++P + I + V+ TA P++
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVIVDAAVINGTAKPTF 409
>gi|387929929|ref|ZP_10132606.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
methanolicus PB1]
gi|387586747|gb|EIJ79071.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
methanolicus PB1]
Length = 421
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 27/238 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++ +I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGQKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S S E D KE L +V DL+ FG+IPEFVGR P+
Sbjct: 268 GDSKLS--------------------EVDEKE---LLSKVLPEDLLKFGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ + +D V+L F ALQ IA+ A+E+KTGAR
Sbjct: 305 IASLEQLDEDALVEILTKPKNALVKQYQKMLELDGVELEFEDGALQEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI--RGIVFLDEVDKIGA 254
GLR+I+E ++LD M+E+P DI IT++TV N+AP I G V +DE+ K A
Sbjct: 365 GLRSIIEGIMLDVMFELPSRDDITKCIITKETVANNSAPKLILNDGTV-IDEIRKTSA 421
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|255573808|ref|XP_002527823.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
gi|223532747|gb|EEF34526.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis]
Length = 603
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 161/259 (62%), Gaps = 24/259 (9%)
Query: 20 LLCMLEGTIVNVP-EKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLG 77
LL MLEGTIVNVP PRK RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +G
Sbjct: 345 LLKMLEGTIVNVPVPDKGPRKHPRGDPIQIDTKDILFICGGAFVDLEKTISERRQDASIG 404
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGAP + R + D A V++ + L+ VE+ DL+ +G+IPEFVGRF
Sbjct: 405 FGAPVRTNM--RTGRMID-----AVVAS--------SLLESVESGDLVAYGLIPEFVGRF 449
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PILV +LN++ LV++L EPKNA+ +QY+ +F+M+ V L F+ EAL+ IA+ A+ K TG
Sbjct: 450 PILVSLSALNEDQLVQVLVEPKNALGKQYKKMFSMNDVKLHFTDEALRLIAKKAMAKNTG 509
Query: 198 ARGLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKI 252
ARGLRAI+ES+L ++MYE+P GS+ I V + E+ V P I+ D +
Sbjct: 510 ARGLRAILESILTEAMYEIPENKTGSNCISAVLVDEEAVGSADEPGCGAKILHGDGA--L 567
Query: 253 GAVPGIHQLRDVGGEGVQQ 271
G +L+D+G G+ Q
Sbjct: 568 GCSFHATKLKDLGNGGIAQ 586
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
RGI+++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 312 RGIIYIDEVDKITKKAESSNIGRDVSGEGVQQALLKM 348
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ + K+ A + F GI+++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 289 GEDVESILYKLLAASEFNVEAAQRGIIYIDEVDKITKKAESSNIGRDVSGEGVQQALLKM 348
>gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
leguminosarum bv. viciae 3841]
gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|424874765|ref|ZP_18298427.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|424881044|ref|ZP_18304676.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WU95]
gi|166214809|sp|Q1MIM6.1|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
[Rhizobium leguminosarum bv. viciae 3841]
gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|392517407|gb|EIW42139.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. trifolii WU95]
gi|393170466|gb|EJC70513.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 425
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ASVKSQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium
caulinodans ORS 571]
gi|172047857|sp|A8HYF4.1|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium
caulinodans ORS 571]
Length = 422
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 145/237 (61%), Gaps = 28/237 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R K +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISSRSKGGTSIGF 269
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA RR L ++VE DL+ +G+IPEF+GR P
Sbjct: 270 GAKVAPVEERRPGEL----------------------FREVEPEDLLKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L + L++ L +IL EPKNA+++QYQ LF M+ VDLT EAL AIAR A+E+KTGA
Sbjct: 308 VLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
RGLR+IME +LLD+M+++PG + + V I+++ V +N P YI + D V GA
Sbjct: 368 RGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVVEQNARPLYI----YADRVGDAGA 420
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|399038247|ref|ZP_10734548.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF122]
gi|398063910|gb|EJL55617.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF122]
Length = 425
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAPDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISEEVARGSARPLYI 412
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
meliloti 1021]
gi|334315799|ref|YP_004548418.1| ATP-dependent Clp protease ATP-binding subunit clpX [Sinorhizobium
meliloti AK83]
gi|384528968|ref|YP_005713056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Sinorhizobium
meliloti BL225C]
gi|384536771|ref|YP_005720856.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
SM11]
gi|407720200|ref|YP_006839862.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
meliloti Rm41]
gi|418402635|ref|ZP_12976143.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
meliloti CCNWSX0020]
gi|433613030|ref|YP_007189828.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
[Sinorhizobium meliloti GR4]
gi|21263475|sp|Q92QQ2.1|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit
[Sinorhizobium meliloti 1021]
gi|333811144|gb|AEG03813.1| ATP-dependent Clp protease ATP-binding subunit clpX [Sinorhizobium
meliloti BL225C]
gi|334094793|gb|AEG52804.1| ATP-dependent Clp protease ATP-binding subunit clpX [Sinorhizobium
meliloti AK83]
gi|336033663|gb|AEH79595.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
SM11]
gi|359503376|gb|EHK75930.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
meliloti CCNWSX0020]
gi|407318432|emb|CCM67036.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
meliloti Rm41]
gi|429551220|gb|AGA06229.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
[Sinorhizobium meliloti GR4]
Length = 425
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRAPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|325274290|ref|ZP_08140401.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
TJI-51]
gi|324100573|gb|EGB98308.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
TJI-51]
Length = 427
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALVQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQKDVSKVVIDESVIDGTSQPLMI 413
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|300780634|ref|ZP_07090489.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
genitalium ATCC 33030]
gi|300533620|gb|EFK54680.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
genitalium ATCC 33030]
Length = 426
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ +GA++GLD++I+ R +K +GFG
Sbjct: 219 LLKILEGTVASVPPQGGRKHPNQEFIQLDTTNILFIVAGAFDGLDKVIAERVGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +A R A++ L QV+ DL+ FG+IPEF+GR PI
Sbjct: 279 AEIDSAAEREEANM----------------------LAQVQPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L +L++E +VR+LTEPKN++++QYQ LF MD L F AL A+A+ A E+ TGAR
Sbjct: 317 LAAVENLDEESMVRVLTEPKNSLVKQYQRLFNMDGAQLRFDDGALSAVAKKAAERGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY++P D+ V IT+ V + P Y+
Sbjct: 377 GLRAIMEEILVPIMYDLPDRDDVDEVVITDAVVNDDAEPDYV 418
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVNRAQNGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASVPPQGG---RKHPNQEFIQLDTTNILFI 254
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 187 GIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALLKI 222
>gi|440226209|ref|YP_007333300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
tropici CIAT 899]
gi|440037720|gb|AGB70754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
tropici CIAT 899]
Length = 425
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAPDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+ + L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDADALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISEEVVRGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|253575672|ref|ZP_04853008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
sp. oral taxon 786 str. D14]
gi|251845010|gb|EES73022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
sp. oral taxon 786 str. D14]
Length = 418
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 138/220 (62%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++GL+++I RR +K +GF
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEQMIKRRIGKKVIGFN 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + G++ + +L V DL+ FG+IPEFVGR P+
Sbjct: 268 AAND---GQKELKPGE-------------------YLSMVLPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVRIL+EPKNA+++QYQ L +D V+L F P+AL+AIAR A+++ TGAR
Sbjct: 306 ISTLEPLDEKTLVRILSEPKNALVKQYQKLLELDNVNLQFEPKALEAIAREAIKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLRAI+E ++LD MYEVP DI ITE VL+ T P
Sbjct: 366 GLRAIIEGIMLDVMYEVPSRDDITDCVITEKVVLEKTVPE 405
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAERGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|429205134|ref|ZP_19196411.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
saerimneri 30a]
gi|428146206|gb|EKW98445.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
saerimneri 30a]
Length = 414
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 28/224 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 211 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEGIVKERLGEKVIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKD--AFLKQVEARDLIDFGMIPEFVGRF 137
ST NK +D + ++Q+ DL+ FG+IPEF+GR
Sbjct: 271 TNST-------------------------NKLQDDVSLMQQIIPEDLLKFGLIPEFIGRL 305
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PIL L ++ LVRILTEPKNA+++QY+ L +D V+L F+P AL AIA++A+ + TG
Sbjct: 306 PILTALEKLKEQDLVRILTEPKNALVKQYKKLLALDGVELDFTPAALGAIAKMAIARNTG 365
Query: 198 ARGLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
ARGLR+I+E + D M+E+PG+ DI V +TE+TV P +
Sbjct: 366 ARGLRSIIEGTINDIMFEIPGNDDIAKVIVTEETVNGTAEPELV 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKLIQNADYDVERAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 215 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 246
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 214
>gi|409436887|ref|ZP_11264046.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhizobium
mesoamericanum STM3625]
gi|408751361|emb|CCM75200.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhizobium
mesoamericanum STM3625]
Length = 425
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAPDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIIRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISEEVARGSARPLYI 412
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|429763603|ref|ZP_19295950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerostipes
hadrus DSM 3319]
gi|429178112|gb|EKY19396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerostipes
hadrus DSM 3319]
Length = 425
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 143/234 (61%), Gaps = 23/234 (9%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL ++EGT+ +VP + + E +Q+DT+NILF+ GA++GL+
Sbjct: 196 TSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTSNILFICGGAFDGLE 255
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
++I R +K +GFGA + G++ L +L L+QV D
Sbjct: 256 KIIESRIGKKSIGFGA---DVFGQKETDLGEL-------------------LRQVLPEDF 293
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+ FG+IPEF+GR P+ V + L++E LVRIL EPK+A+++QYQ LF MD V LTF +AL
Sbjct: 294 VKFGLIPEFIGRVPVNVSLNPLDEEALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDAL 353
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
AIA+ ALE+KTGARGLRAIME +++D MYE+P +D+ IT+D V P
Sbjct: 354 IAIAKKALERKTGARGLRAIMEGVIMDLMYEIPSQTDVSECLITKDVVEGKEKP 407
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKIIQAADYDIDRAQCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ +I N +I
Sbjct: 215 IEGTVASVPPQGG---RKHPHQEFIQIDTSNILFIC 247
>gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
sp. ATCC 49242]
gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
sp. ATCC 49242]
Length = 422
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRSTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + D F +QV+ DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGDIF-RQVQPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L +ILTEPKNA+++QYQ LF M+ V+LTF +AL A+AR A+E+ TGAR
Sbjct: 308 IATLEDLDEDALKKILTEPKNALVKQYQRLFEMENVELTFQDDALSAVARKAIERHTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG + + V I + V P YI
Sbjct: 368 GLRSIMEGILLDTMFDLPGLEGVEQVVIGPEVVEGKARPLYI 409
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|167766383|ref|ZP_02438436.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1]
gi|167711974|gb|EDS22553.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
sp. SS2/1]
Length = 333
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 143/234 (61%), Gaps = 23/234 (9%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL ++EGT+ +VP + + E +Q+DT+NILF+ GA++GL+
Sbjct: 95 TSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTSNILFICGGAFDGLE 154
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
++I R +K +GFGA + G++ L +L L+QV D
Sbjct: 155 KIIESRIGKKSIGFGA---DVFGQKETDLGEL-------------------LRQVLPEDF 192
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+ FG+IPEF+GR P+ V + L++E LVRIL EPK+A+++QYQ LF MD V LTF +AL
Sbjct: 193 VKFGLIPEFIGRVPVNVSLNPLDEEALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDAL 252
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
AIA+ ALE+KTGARGLRAIME +++D MYE+P +D+ IT+D V P
Sbjct: 253 IAIAKKALERKTGARGLRAIMEDVIMDLMYEIPSQTDVSECLITKDVVEGKEKP 306
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 54 GEDVENILLKIIQAADYDIDRAQCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI 113
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ +I N +I
Sbjct: 114 IEGTVASVPPQGG---RKHPHQEFIQIDTSNILFIC 146
>gi|424743169|ref|ZP_18171482.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-141]
gi|422943430|gb|EKU38446.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-141]
Length = 437
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSIMENVLLETMYDLPSRTDVGTVIINEAVINGEAEPVY 409
>gi|299771639|ref|YP_003733665.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
oleivorans DR1]
gi|298701727|gb|ADI92292.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
oleivorans DR1]
Length = 437
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSIMENVLLETMYDLPSRTDVGTVIINEAVINGEAEPVY 409
>gi|262280903|ref|ZP_06058686.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
gi|262257803|gb|EEY76538.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
Length = 437
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSIMENVLLETMYDLPSRTDVGTVIINEAVINGEAEPVY 409
>gi|376254878|ref|YP_005143337.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae PW8]
gi|372117962|gb|AEX70432.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae PW8]
Length = 430
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|402486167|ref|ZP_10832999.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium sp. CCGE
510]
gi|401814823|gb|EJT07153.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium sp. CCGE
510]
Length = 425
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ AR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALRETARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|375293636|ref|YP_005128176.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae INCA 402]
gi|371583308|gb|AEX46974.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae INCA 402]
Length = 430
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
alexandrii DFL-11]
gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
alexandrii DFL-11]
Length = 421
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTN+LF+ GA+ GLD++IS R + +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLDKIISDRGTQTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A ED + + F ++E DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------QAQVHAPEDRRIGELF-SELEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILTEPKNA+++QYQ LF M++V+L+F EAL+AIA A+E+KTGAR
Sbjct: 308 IATLEDLDEDALITILTEPKNALVKQYQRLFEMEQVELSFHEEALRAIANRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LLD+MYE+PG + V I+ + V P YI
Sbjct: 368 GLRSILESILLDTMYELPGLKGVKEVVISPEVVKGEARPLYI 409
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKADNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNMLFIC 246
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKADNPSI--TRDVSGEGVQQALLKI 213
>gi|406897581|gb|EKD41496.1| hypothetical protein ACD_73C00692G0001 [uncultured bacterium]
Length = 416
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 143/221 (64%), Gaps = 27/221 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + + +QVDTTNILF+ GA+ GLD++I +R N+K +GFG
Sbjct: 209 LLKIIEGTVANVPPKGGRKHPQQDFIQVDTTNILFICGGAFCGLDQIIEKRLNKKGMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A +L N N++K+ L+ +E DL+ FG+IPEFVGR
Sbjct: 269 A--------------ELKN----------NRDKNVGEVLQNLETEDLLRFGLIPEFVGRL 304
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ L++ L+ IL +P+NA+I+QYQ LF +KV LT + +AL A+A+ A++KK+G
Sbjct: 305 PVVATLTELDETALIDILVKPRNALIKQYQRLFDFEKVKLTLTDDALHAVAKQAIKKKSG 364
Query: 198 ARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
ARGLR+I+ES++LD MY++P D I V I +DTV K + P
Sbjct: 365 ARGLRSILESIMLDVMYDIPSQDNIEEVVINDDTVDKGSQP 405
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L + A F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILNLLQAADFDKAKAERGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P +I N +I
Sbjct: 211 KIIEGTVANVPPKGG---RKHPQQDFIQVDTTNILFIC 245
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKI 212
>gi|376285276|ref|YP_005158486.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae 31A]
gi|371578791|gb|AEX42459.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae 31A]
Length = 430
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|340028582|ref|ZP_08664645.1| ATP-dependent protease ATP-binding subunit ClpX [Paracoccus sp.
TRP]
Length = 421
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRNKGTAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E+ D+K KQ+E DL+ FG+IPEFVGR P+
Sbjct: 269 ASVKEN----------------------DDKGVGELFKQLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILT+PKNA+++QYQ LF ++ V LTF+ +AL AIAR A+++KTGAR
Sbjct: 307 IATLGDLDEQALITILTQPKNALVKQYQRLFELEGVKLTFTEDALVAIARRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLR+IME +LLD+M+++PG D
Sbjct: 367 GLRSIMEDILLDTMFDLPGMD 387
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|38234360|ref|NP_940127.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae NCTC 13129]
gi|375291440|ref|YP_005125980.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae 241]
gi|376243366|ref|YP_005134218.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae CDCE 8392]
gi|376246276|ref|YP_005136515.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC01]
gi|376249061|ref|YP_005141005.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC04]
gi|376251864|ref|YP_005138745.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC03]
gi|376257677|ref|YP_005145568.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae VA01]
gi|376288280|ref|YP_005160846.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae BH8]
gi|376290969|ref|YP_005163216.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae C7 (beta)]
gi|61211524|sp|Q6NFU7.1|CLPX_CORDI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|38200623|emb|CAE50319.1| Putative ATPase [Corynebacterium diphtheriae]
gi|371581111|gb|AEX44778.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae 241]
gi|371585614|gb|AEX49279.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae BH8]
gi|372104365|gb|AEX67962.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae C7 (beta)]
gi|372106608|gb|AEX72670.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae CDCE 8392]
gi|372108906|gb|AEX74967.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC01]
gi|372113368|gb|AEX79427.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC03]
gi|372115629|gb|AEX81687.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC04]
gi|372120194|gb|AEX83928.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae VA01]
Length = 430
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|291451315|ref|ZP_06590705.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
J1074]
gi|359145283|ref|ZP_09179098.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
S4]
gi|421742548|ref|ZP_16180669.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Streptomyces
sp. SM8]
gi|291354264|gb|EFE81166.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
J1074]
gi|406689062|gb|EKC92962.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Streptomyces
sp. SM8]
Length = 428
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + +EKD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKREIEEKDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT + V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITAEVVQSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|336114570|ref|YP_004569337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
coagulans 2-6]
gi|335368000|gb|AEH53951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
coagulans 2-6]
Length = 422
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 141/222 (63%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDQIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
DL N D ++ + LKQV DL+ FG+IPEF+GR P+
Sbjct: 268 T--------------DLKN---------DELDEKSLLKQVLPEDLLSFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+++QY+ + +D V+L F +AL+ IA+ A+E+KTGAR
Sbjct: 305 IATLEQLDEEALIKILTEPKNALVKQYKKMLELDHVELEFEQDALKEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+++P DI +T+++VL P +
Sbjct: 365 GLRSIIEGIMLDVMFDLPSREDIEKCIVTKESVLDKEFPRLV 406
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter
capsulatus SB 1003]
gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
capsulatus SB 1003]
Length = 424
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 130/199 (65%), Gaps = 22/199 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R A L K++E DL+ FG+IPEFVGR P+
Sbjct: 269 ADVKDPESRGAGEL----------------------FKELEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV ILTEPKNA+++QYQ LF ++ V LTF+P+A++AIA A+++KTGAR
Sbjct: 307 IATLEDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTPDAMKAIAARAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG 218
GLR+IME +LLD+M+E+PG
Sbjct: 367 GLRSIMEDILLDTMFELPG 385
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|395242146|ref|ZP_10419145.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480507|emb|CCI85385.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
pasteurii CRBIP 24.76]
Length = 422
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 139/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIRMDTTNILFIVGGAFDGIEEIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + DL A D + K + DL+ FG+IPEF+GR P+
Sbjct: 268 AEN------------DLNTVDA-----------DDWTKHLTTGDLVKFGLIPEFIGRIPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN E L+RILTEPKNA+I+QYQ L ++D V LTF+P+ALQAIA LA ++ GAR
Sbjct: 305 ITTLNKLNNEDLIRILTEPKNALIKQYQKLLSLDNVKLTFNPDALQAIAELATDRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ L+D M+ P DI V +T++ + ++ P IR
Sbjct: 365 GLRTIIENALMDIMFRTPSDDDIKEVQVTKEVITEHAQPKIIR 407
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAERGIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIRMDTTNILFI 243
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKI 211
>gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 6_1_63FAA]
gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 6_1_63FAA]
Length = 436
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 139/213 (65%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +Q+DTTNILF+ GA+ GLD++I RK+ K +GF
Sbjct: 210 LLKIVEGTVASVPPQGGRKHPQQEFIQIDTTNILFICGGAFEGLDKIIETRKDTKAIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +E+ K LK+V +DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------NAQVQTKEE-KNVGELLKEVMPQDLVKFGLIPEFVGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V ++L++ LV+ILTEPKN++++QYQ LF +D ++L F EAL+AIA ++E+KTGAR
Sbjct: 308 VVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIADKSMERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTV 231
GLRAIME+ ++D MY P D I+ IT+D V
Sbjct: 368 GLRAIMENSMMDLMYTAPSDDSIVSCTITKDVV 400
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P +I N +I
Sbjct: 214 VEGTVASVPPQGG---RKHPQQEFIQIDTTNILFIC 246
>gi|323703642|ref|ZP_08115285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Desulfotomaculum nigrificans DSM 574]
gi|323531414|gb|EGB21310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Desulfotomaculum nigrificans DSM 574]
Length = 416
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 205 LLKILEGTIASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIQNRTGKKTMGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +R + ++ L Q+ DL+ FG+IPEFVGR P+
Sbjct: 265 A---EIQSKREQKIGEI-------------------LAQILPEDLLKFGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ LVRILTEPKNA+ +QY+ LF +D V L P+AL+ +A+ AL++KTGAR
Sbjct: 303 IVTLDALDEGALVRILTEPKNALTKQYEKLFELDGVSLEIQPDALREVAKEALKRKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME ++L+ MY++P DI V IT D +LK P I
Sbjct: 363 GLRAIMEEVMLNIMYDIPSREDISKVVITRDAILKKGEPLLI 404
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTIASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp.
PRwf-1]
gi|172048458|sp|A5WC69.1|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
sp. PRwf-1]
Length = 425
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 138/219 (63%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +P + E++QVDT+NIL + GA++GLD++I +R + +GF
Sbjct: 225 LLKLIEGTVAAIPPHGGRKHPNQELIQVDTSNILIIVGGAFSGLDKVIQQRTEKTGIGF- 283
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++D K+ KQVE DLI FG+IPE +GR P+
Sbjct: 284 --------------------NAEVKSKDDGKQLSELFKQVEPEDLIKFGLIPELIGRLPV 323
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+++QYQ LF M+ +L+F+ L+AIA A+E+KTGAR
Sbjct: 324 IATLEELDEEALMQILTEPKNAIVKQYQYLFEMEDAELSFTEAGLKAIAHKAMERKTGAR 383
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ LLD+MYE+P SD V + ED + + AP
Sbjct: 384 GLRSIVENALLDTMYELPSMSDAKQVVVDEDVINEGAAP 422
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 34/178 (19%)
Query: 184 LQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED--TVLKNT------ 235
L+ A+LA +KK G D+M E+ S+IL++ T T+L T
Sbjct: 100 LKVAAKLAEDKKQAKLGAD--------DAMVELSKSNILLIGPTGSGKTLLAQTLARMLD 151
Query: 236 APSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVS----ALAAFGIVFLDEVD 291
P + L E +G DV E + Q +L+ + A GI+++DE+D
Sbjct: 152 VPFAMADATTLTEAGYVG--------EDV--ENIVQKLLQAADYDVEKAEQGIIYVDEID 201
Query: 292 KIGAV-PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
KI + RDV GEGVQQ +LK+ + P+ G ++PN I N
Sbjct: 202 KISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGG---RKHPNQELIQVDTSN 256
>gi|78043800|ref|YP_359189.1| ATP-dependent protease ATP-binding subunit ClpX [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995915|gb|ABB14814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Carboxydothermus hydrogenoformans Z-2901]
Length = 418
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 143/224 (63%), Gaps = 24/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 204 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFEGIEKIIQNRIGKKGLGFG 263
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +R ++ ++ LK + DL+ FG+IPEFVGR PI
Sbjct: 264 A---EIKPKREQNVGEI-------------------LKHIMPEDLLKFGLIPEFVGRLPI 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRILTEPKNA+I+QYQ LF +D V L F +AL+AIA+ A+++ TGAR
Sbjct: 302 IVTLDALDEDALVRILTEPKNALIKQYQKLFELDGVTLEFEEDALRAIAQKAIKRNTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLRAI+E ++LD MYE+P DI+ +T D V++N A + G
Sbjct: 362 GLRAILEEVMLDVMYEIPSRKDIIKCIVTRD-VIENKAKPILVG 404
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 148 GEDVENILLKLIQNADYDIERAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 205
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 206 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFI 239
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 171 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 207
>gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfococcus
oleovorans Hxd3]
gi|238686897|sp|A8ZXB8.1|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus
oleovorans Hxd3]
Length = 417
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP K + + + V+VDTTNILF+ G + GLD+LI RR EK +GFG
Sbjct: 207 LLKIMEGTLASVPPKGGRKHPQQDFVKVDTTNILFICGGTFTGLDKLIERRVGEKTIGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ V+ E+D K + L+ VE +DLI FG+IPEF+GR PI
Sbjct: 267 S---------------------KVTGEKD-KNYNQSLQLVEPQDLIRFGLIPEFLGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E LV+ILTEPKNA+I+Q+Q LF ++ V+L F+ AL +A LA+++K+GAR
Sbjct: 305 IVTLDELSEESLVKILTEPKNALIKQFQKLFEIEGVNLRFTDSALATVASLAMKRKSGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES +LD MYE+P + + I E+ + K AP I
Sbjct: 365 GLRSILESCMLDLMYEIPSQEGVKECVIGEEVIKKKEAPMLI 406
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 172 AQRGIVYVDEIDKIAQRSDNPSIT--RDVSGEGVQQALLKIMEGTLASVPPKGG---RKH 226
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 227 PQQDFVKVDTTNILFIC 243
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIVYVDEIDKIAQRSDNPSIT--RDVSGEGVQQALLKI 210
>gi|238060617|ref|ZP_04605326.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
39149]
gi|237882428|gb|EEP71256.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
39149]
Length = 431
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLD++I R GFG
Sbjct: 214 LLKMLEGTVANVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R S+++ + D QV D++ FG+IPEF+GR P+
Sbjct: 274 A--------RLRSVSE--------------RSTDDIFSQVMPEDMLKFGLIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++ LVRILTEP+NA+++QYQ LF +D V+L F P AL+AIA A+ + TGAR
Sbjct: 312 ITNVRSLDRSALVRILTEPRNALVKQYQRLFELDGVELEFDPPALEAIADQAMLRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP + D V IT + VL+N P+ +
Sbjct: 372 GLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENVNPTIV 413
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 216 KMLEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFIC 250
>gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp.
JS614]
gi|166214794|sp|A1SME0.1|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides
sp. JS614]
Length = 426
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + E +Q+DTTNILFV GA+ GL+ +I +R +K LGF
Sbjct: 216 LLKIIEGTTASVPPQGGRKHPHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKTLGFT 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A R A L L QV DL FG+IPEF+GR P+
Sbjct: 276 AEVRGKAEREAEDL----------------------LAQVRPEDLTKFGLIPEFIGRLPL 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+QE LV+ILTEP+NA+++QYQ LF +D V+L F+P+A++AIA ALE+ TGAR
Sbjct: 314 IASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIADNALERGTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +LL MY+VP DI V +T + V+ +P+ I
Sbjct: 374 GLRAIIEEVLLHVMYDVPSRGDIAKVIVTREVVMDGVSPTLI 415
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 160 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKAENPSI--TRDVSGEGVQQALL 217
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N ++
Sbjct: 218 KIIEGTTASVPPQGG---RKHPHQEFIQIDTTNILFV 251
>gi|381197076|ref|ZP_09904417.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
lwoffii WJ10621]
Length = 436
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 143/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVKKKDEGKKLSDLFRQVEATDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ AL++ TGAR
Sbjct: 310 IATLEELDEEALMQILTEPKNALTRQYQHLFDMENVDLVFEDSALRAVAKKALDRNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E+ LL++MY++P +D+ V + ED + AP +
Sbjct: 370 GLRSILENTLLETMYDLPSRTDVGTVVVNEDVINGTAAPLF 410
>gi|308473141|ref|XP_003098796.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
gi|308268092|gb|EFP12045.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
Length = 523
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 146/225 (64%), Gaps = 16/225 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++V V + SP V +DTTNILFV+SGA++ ++ +I+RR +++ LGF
Sbjct: 299 LLKLVEGSLVKVRDPLSP----NSKVTIDTTNILFVSSGAFSNIEHIIARRMDKRSLGFS 354
Query: 80 APST----ESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVG 135
+ ST ES + L D + + K +D LKQ + DLI FGMIPE VG
Sbjct: 355 SASTSPHEESDQHTSEKLRDSDEEVVS-------KARDEMLKQCDQGDLIAFGMIPELVG 407
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
RFP++VPFH LN+ L+ +LTEPK +++ Q + F + V+L FSPEA++ IA +A+++K
Sbjct: 408 RFPVIVPFHCLNKTHLMSVLTEPKGSLVAQTKKFFENENVELRFSPEAIEMIAEMAVKRK 467
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
TGAR L++I+E ++++ YEVPGSD+ V I D LK+ + + I
Sbjct: 468 TGARALKSIVEKAVMNAKYEVPGSDVKCVEIN-DKSLKDQSFTII 511
>gi|262369922|ref|ZP_06063249.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
gi|262314961|gb|EEY96001.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
Length = 438
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 143/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 213 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 272 --------------------TAEVKKKDEGKKLSDLFRQVEATDLVKFGLIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ AL++ TGAR
Sbjct: 312 IATLEELDEEALMQILTEPKNALTRQYQHLFDMENVDLVFEDSALRAVAKKALDRNTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E+ LL++MY++P +D+ V + ED + AP +
Sbjct: 372 GLRSILENTLLETMYDLPSRTDVGTVVVNEDVINGTAAPLF 412
>gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
sp. JE062]
gi|374331791|ref|YP_005081975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudovibrio
sp. FO-BEG1]
gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
sp. JE062]
gi|359344579|gb|AEV37953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudovibrio
sp. FO-BEG1]
Length = 421
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A ED K + F ++E DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AASVMAPEDRKTGELF-AELEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV IL EPKNA++ QYQ LF M+ V+LTF +AL+AIAR A+E+KTGAR
Sbjct: 308 IATLEDLDEDALVSILREPKNALVAQYQRLFEMENVELTFHEDALKAIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL++MYE+PG + V I+ + V P YI
Sbjct: 368 GLRSILEAILLETMYELPGLKGVKEVVISAEVVDGEARPLYI 409
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKITRKAENPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKAENPSI--TRDVSGEGVQQALLKI 213
>gi|455648624|gb|EMF27489.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
gancidicus BKS 13-15]
Length = 428
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++++ + KD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIISKQEREAKDQF-EEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|405379886|ref|ZP_11033731.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF142]
gi|397323501|gb|EJJ27894.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. CF142]
Length = 425
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+L+F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELSFHEDALREIARKAIIRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISEEVARGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|348684952|gb|EGZ24767.1| hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae]
Length = 703
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 145/230 (63%), Gaps = 20/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEG++VNVPEK + RGE + +DTTNILF+ GA+ GL++ ++RR + +GFG
Sbjct: 477 LLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFG 536
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + N +D+ + L Q E DL+ +G+IPEF+GRFP+
Sbjct: 537 A--------------QMPNMRL-----KDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPM 577
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ LV++LTEPKN++++QY+ LF + V+ + AL+A+A AL K TGAR
Sbjct: 578 LVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALSKNTGAR 637
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
GLR+I E L+++M+++P +D+ V++ E+ +L P IRG + LDE
Sbjct: 638 GLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGRKRPVLIRGDMTLDE 687
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 444 RGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKI 480
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DE+DKI + RDV GEGVQQ +LK+ + P G + P Y
Sbjct: 445 GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMV-NVPEKG--GRKNPRGEY 501
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 502 ITIDTTNILFIC 513
>gi|376293823|ref|YP_005165497.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC02]
gi|372111146|gb|AEX77206.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae HC02]
Length = 430
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLHEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSI--TRDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 222
>gi|296394281|ref|YP_003659165.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Segniliparus
rotundus DSM 44985]
gi|296181428|gb|ADG98334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Segniliparus
rotundus DSM 44985]
Length = 426
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ +GA+ GL+++I R ++ LGFG
Sbjct: 213 LLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIGERVGKRGLGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED + +D F +V DLI FG+IPEF+GR P+
Sbjct: 273 A---------------------QIRTREDVETRDYF-AEVMPEDLIKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV ILTEPKNA+++QYQ LF MD V+L FS EA++A+A AL + TGAR
Sbjct: 311 IASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFSKEAVEAVADQALLRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MY++P D+ V ITE+TV +N P+ +
Sbjct: 371 GLRAIMEEVLLPVMYDIPSRDDVAKVVITEETVRENVLPTIV 412
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTQASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 216
>gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
vitis S4]
gi|254763828|sp|B9JVD6.1|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
S4]
Length = 425
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVVSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L+F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V++ A P YI
Sbjct: 371 GLRSIMEKILLDTMFELPELEGVREVVISDEVVRGAARPLYI 412
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|169824904|ref|YP_001692515.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
ATCC 29328]
gi|167831709|dbj|BAG08625.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
ATCC 29328]
Length = 411
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP + + E +QVDT NILF+ GA+ GL+++I RR K +GFG
Sbjct: 206 LLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGAFEGLEKIIERRTETKSIGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ ++ + L K DLI FG+IPEFVGR P+
Sbjct: 266 ADLGDNEHKKISEL----------------------FKDFRPEDLIKFGLIPEFVGRIPV 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ L+RIL EPKNA+I+QYQ LF MD V+L F +AL+AIA+LA ++KTGAR
Sbjct: 304 LVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E L++ M+E+P DI V +T+++VL+ P +
Sbjct: 364 GLRTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLV 405
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 150 GEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALL 207
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN YI N +I
Sbjct: 208 KIVEGTICNVPPQGG---RKHPNQEYIQVDTRNILFI 241
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 173 QGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALLKI 209
>gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylocella
silvestris BL2]
gi|254763855|sp|B8EIL3.1|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
silvestris BL2]
Length = 421
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F ++VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RKVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L +ILTEPKNA+++QYQ LF M+ +L+F EAL +A+ A+E++TGAR
Sbjct: 308 IATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAKKAIERRTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG D + V I D V + P YI
Sbjct: 368 GLRSIMEGILLDTMFDLPGLDSVEQVVIGPDVVEGKSRPLYI 409
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|407781585|ref|ZP_11128803.1| ATP-dependent protease ATP-binding subunit ClpX [Oceanibaculum
indicum P24]
gi|407207802|gb|EKE77733.1| ATP-dependent protease ATP-binding subunit ClpX [Oceanibaculum
indicum P24]
Length = 422
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++I +R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIIGQRNKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L++VE DL+ FG+IPEF+GR P+
Sbjct: 270 ADVQGPDERRTGDV----------------------LREVEPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV ILT PKNA+++QYQ LF M+ V LTF+ +AL+AIA+ A+++KTGAR
Sbjct: 308 LATLEDLDENALVDILTSPKNALVKQYQRLFEMEDVHLTFAEDALRAIAQKAIQRKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD M+++PG DI + I + V AP Y+
Sbjct: 368 GLRSIMEGILLDPMFDLPGMEDIDEIVINREVVESKVAPLYV 409
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|356576571|ref|XP_003556404.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Glycine max]
Length = 513
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 150/223 (67%), Gaps = 20/223 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPE+ + + RG+ +Q+DT NILF+ GA+ L++ IS R+ + +GFG
Sbjct: 258 LLKMLEGTMVNVPERGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFG 317
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+P R + N AAV++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 318 SPV-----RSNMRTGGVTN--AAVTS--------SLLESVESADLIAYGLIPEFIGRFPI 362
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L+ +L ++ L+++LTEPKNA+ +QY+ LF M+ V L F+ +AL+ IA+ A+ K TGAR
Sbjct: 363 LISLSALTEDQLMQVLTEPKNALAKQYKKLFNMNNVKLHFTEKALRLIAKKAMAKNTGAR 422
Query: 200 GLRAIMESLLLDSMYEVP----GSDIL-MVHITEDTVLKNTAP 237
GLRA++ES+L ++M+E+P G++++ V + E++V AP
Sbjct: 423 GLRALLESILTEAMFEIPDVKAGNELIGAVVVDEESVGSVNAP 465
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A A F GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 202 GEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 261
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 225 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 261
>gi|375137008|ref|YP_004997658.1| ATP-dependent protease ATP-binding subunit [Acinetobacter
calcoaceticus PHEA-2]
gi|427422963|ref|ZP_18913129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-136]
gi|325124453|gb|ADY83976.1| ATP-dependent protease ATP-binding subunit [Acinetobacter
calcoaceticus PHEA-2]
gi|425700063|gb|EKU69654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-136]
Length = 437
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVAKKALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSIMENVLLETMYDLPSRTDVGTVIINEAVINGEAEPVY 409
>gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
hansenii DSM 20583]
gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
hansenii DSM 20583]
Length = 456
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 139/213 (65%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +Q+DTTNILF+ GA+ GLD++I RK+ K +GF
Sbjct: 230 LLKIVEGTVASVPPQGGRKHPQQEFIQIDTTNILFICGGAFEGLDKIIETRKDTKAIGF- 288
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +E+ K LK+V +DL+ FG+IPEFVGR P+
Sbjct: 289 --------------------NAQVQTKEE-KNVGELLKEVMPQDLVKFGLIPEFVGRVPV 327
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V ++L++ LV+ILTEPKN++++QYQ LF +D ++L F EAL+AIA ++E+KTGAR
Sbjct: 328 VVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIADKSMERKTGAR 387
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTV 231
GLRAIME+ ++D MY P D I+ IT+D V
Sbjct: 388 GLRAIMENSMMDLMYTAPSDDSIVSCTITKDVV 420
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 174 GEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKI 233
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P +I N +I
Sbjct: 234 VEGTVASVPPQGG---RKHPQQEFIQIDTTNILFIC 266
>gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
cf. saccharolyticum K10]
Length = 434
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL++++ R +GF
Sbjct: 211 LLKILEGTVASVPPQGGRKHPQQELLQIDTTNILFICGGAFDGLEKIVENRLGAGSIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
E A R+ N + D L QV DL FG+IPEF+GR P+
Sbjct: 270 --EVEIADRQ-------------------NSDIDEMLAQVMPEDLTKFGLIPEFIGRVPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SLN+E LV IL+ PKNA+++QYQ LF +D V L F+ +AL +IA +A+E+KTGAR
Sbjct: 309 TVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIAHMAVERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIMES+++D MYE+P S I + IT+D V P +
Sbjct: 369 GLRAIMESVMMDIMYEIPSDSSIGICTITKDVVEGKCGPEIV 410
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKIIQAADYDISKAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P + N +I
Sbjct: 215 LEGTVASVPPQGG---RKHPQQELLQIDTTNILFIC 247
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 179 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 214
>gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
sp. M62/1]
gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
sp. M62/1]
Length = 443
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL++++ R +GF
Sbjct: 220 LLKILEGTVASVPPQGGRKHPQQELLQIDTTNILFICGGAFDGLEKIVENRLGAGSIGF- 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
E A R+ N + D L QV DL FG+IPEF+GR P+
Sbjct: 279 --EVEIADRQ-------------------NSDIDEMLAQVMPEDLTKFGLIPEFIGRVPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SLN+E LV IL+ PKNA+++QYQ LF +D V L F+ +AL +IA +A+E+KTGAR
Sbjct: 318 TVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIAHMAVERKTGAR 377
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIMES+++D MYE+P S I + IT+D V P +
Sbjct: 378 GLRAIMESVMMDIMYEIPSDSSIGICTITKDVVEGKCGPEIV 419
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 164 GEDVENILLKIIQAADYDISKAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 223
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P + N +I
Sbjct: 224 LEGTVASVPPQGG---RKHPQQELLQIDTTNILFIC 256
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 188 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 223
>gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
rhizophila DC2201]
gi|238689204|sp|B2GGB7.1|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
rhizophila DC2201]
Length = 431
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 140/220 (63%), Gaps = 26/220 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E + +DTTN+LF+ +GA+ GL+ ++ +R +K +GFG
Sbjct: 220 LLKILEGTVASVPPQGGRKHPQQEFLHIDTTNVLFIVAGAFAGLEEIVQQRTGKKGIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ++A D+A Q V+ DL+ FG+IPEF+GR P+
Sbjct: 280 APIRDTAD------VDIAGQ-------------------VQPEDLLKFGLIPEFIGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ +VRILTEP+NA+++QY+ LF +D V+LTF P+AL+AIA LALE+ TGAR
Sbjct: 315 VATLSKLSVADMVRILTEPRNALVKQYRKLFQLDGVELTFDPQALEAIAELALERGTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLRAI+E +L+ M+++PG D+ V +TED V K P
Sbjct: 375 GLRAILEDILMPVMFDLPGREDVAAVLVTEDAVAKLADPE 414
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 164 GEDVENILLKLIQAADFDLKKAEQGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 221
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 222 KILEGTVASVPPQGG---RKHPQQEFLHIDTTNVLFI 255
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 187 QGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKI 223
>gi|410666835|ref|YP_006919206.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermacetogenium phaeum DSM 12270]
gi|409104582|gb|AFV10707.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Thermacetogenium phaeum DSM 12270]
Length = 419
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 28/221 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA+ G+D++I R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIDKIIQNRIGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKD--AFLKQVEARDLIDFGMIPEFVGRF 137
A +L+ Q EKD L Q+ DL+ +G+IPEFVGR
Sbjct: 268 A--------------ELSRQ-----------EKDIGKILSQILPVDLLKYGLIPEFVGRV 302
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PI+V +L++E LVRILTEPKNA+++QYQ LF +D V L F +AL+A+A+ A+ + TG
Sbjct: 303 PIIVTLDALDEEALVRILTEPKNALVRQYQKLFEIDGVTLEFKEDALRAVAKEAIRRNTG 362
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
ARGLRAI+E ++L+ MYEVP DI+ IT+D + K P
Sbjct: 363 ARGLRAILEDIMLNVMYEVPSRHDIIKCVITKDVIAKKEEP 403
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|51891497|ref|YP_074188.1| ATP-dependent protease ATP-binding subunit ClpX [Symbiobacterium
thermophilum IAM 14863]
gi|61211457|sp|Q67SJ9.1|CLPX_SYMTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|51855186|dbj|BAD39344.1| ATP-dependent Clp protease ATP-binding subunit [Symbiobacterium
thermophilum IAM 14863]
Length = 424
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q++TTNILF+ GA++G+D++I+ R LGFG
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQINTTNILFICGGAFDGIDKIIANRVGRSGLGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ E LKQ+ DL+ FG+IPEF+GR PI
Sbjct: 269 A--------------DIRSKQEQNVGE--------LLKQIMPEDLLKFGLIPEFIGRLPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRIL EPKNA+++QYQ L +D ++L F EA++AIA+ AL + TGAR
Sbjct: 307 VVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++ D MYEVP +D+ IT+D VLK P
Sbjct: 367 GLRAIIEDIMTDVMYEVPSRTDVTKCVITKDVVLKKQEP 405
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDIEKAERGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQINTTNILFIC 245
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 212
>gi|387773864|ref|ZP_10129149.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parahaemolyticus HK385]
gi|386903685|gb|EIJ68492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parahaemolyticus HK385]
Length = 414
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 142/219 (64%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL +LEGT+ N+ + S + +GE + VDT+ ILF+ GA+ GLD+++ R N++ +GF
Sbjct: 214 LLKLLEGTVANINPQGSRKHPKGETIPVDTSKILFICGGAFAGLDKIVESRTNKQGGIGF 273
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A +L N ++D ++ KQVE DL+ FG+IPE +GR P
Sbjct: 274 AA--------------ELKN-------DKDRQDLTELFKQVEPEDLVRFGLIPELIGRLP 312
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E L++ILTEPKNA+I+QYQ LF M+ V+L F+ EAL AIA+ A+ +KTGA
Sbjct: 313 VVTPLQELDEEALIQILTEPKNAIIRQYQALFQMENVELEFTKEALVAIAKKAIARKTGA 372
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
RGLR+I+E+LLLD+MY++P V ++++ V +N P
Sbjct: 373 RGLRSIVENLLLDTMYDLPTLKAKKVIVSKECVERNEKP 411
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
RGIVF+DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 RGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL 217
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
A GIVF+DE+DKI + RDV GEGVQQ +LK+
Sbjct: 179 AERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL 217
>gi|227503051|ref|ZP_03933100.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
accolens ATCC 49725]
gi|227076112|gb|EEI14075.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
accolens ATCC 49725]
Length = 428
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 23/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DT+NILF+ +GA+ GLD++I+ R +K +GFG
Sbjct: 220 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDQVIADRVGKKGVGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ED +EK QV DL+ FG+IPEF+GR P+
Sbjct: 280 AKL----------------------GTEDEREKVDLFSQVRPEDLVKFGLIPEFIGRLPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++LTEPKN++++QY LF MD +L AL AIA LALE+KTGAR
Sbjct: 318 VATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAELALERKTGAR 377
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLRAI+E LL+ M+E+P DI VHIT D V + P +
Sbjct: 378 GLRAILEELLVPVMFELPDREDISAVHITADCVTQGAEPEF 418
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 164 GEDVENILLKLLQAADFDVERAQRGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALL 221
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 222 KILEGTVAAIPPQGG---RKHPNQEFIQLDTSNILFI 255
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 187 RGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALLKI 223
>gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
trichosporium OB3b]
gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
trichosporium OB3b]
Length = 420
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 209 LLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRGTSIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A ++ + D F + V+ DL+ FG+IPEFVGR P+
Sbjct: 269 A---------------------TVQAPDERRTGDIF-RHVQPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L RILTEPKNA+++QYQ LF M+ +LTF EAL ++AR A+E+ TGAR
Sbjct: 307 IATLEDLDEEALKRILTEPKNALVKQYQRLFEMESTELTFQDEALSSVARKAIERHTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+PG + + V I + V P YI
Sbjct: 367 GLRSIMEGILLDTMFELPGLEGVEQVVIGPEVVEGKARPLYI 408
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 174 AQRGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIMEGTIASVPPQGG---RKH 228
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 229 PQQEFLQVDTTNILFIC 245
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|293610273|ref|ZP_06692574.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827505|gb|EFF85869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 439
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 212 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 271 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LFTM+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 311 IATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVAKKALERNTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P +D+ V I E + P Y
Sbjct: 371 GLRSIMENVLLETMYDLPSRTDVGTVIINEAVINGEAEPVY 411
>gi|191638334|ref|YP_001987500.1| ATP-dependent protease ATP-binding protein ClpX [Lactobacillus
casei BL23]
gi|227535178|ref|ZP_03965227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239631581|ref|ZP_04674612.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301066387|ref|YP_003788410.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
casei str. Zhang]
gi|385820035|ref|YP_005856422.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
casei LC2W]
gi|385823235|ref|YP_005859577.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
casei BD-II]
gi|409997199|ref|YP_006751600.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
casei W56]
gi|417980627|ref|ZP_12621307.1| Clp protease ATP-binding subunit [Lactobacillus casei 12A]
gi|417983410|ref|ZP_12624048.1| Clp protease ATP-binding subunit [Lactobacillus casei 21/1]
gi|417986705|ref|ZP_12627271.1| Clp protease ATP-binding subunit [Lactobacillus casei 32G]
gi|417989589|ref|ZP_12630092.1| Clp protease ATP-binding subunit [Lactobacillus casei A2-362]
gi|417992851|ref|ZP_12633203.1| Clp protease ATP-binding subunit [Lactobacillus casei CRF28]
gi|417996199|ref|ZP_12636482.1| Clp protease ATP-binding subunit [Lactobacillus casei M36]
gi|417999034|ref|ZP_12639247.1| Clp protease ATP-binding subunit [Lactobacillus casei T71499]
gi|418001969|ref|ZP_12642097.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei UCD174]
gi|418005043|ref|ZP_12645043.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei UW1]
gi|418007935|ref|ZP_12647806.1| Clp protease ATP-binding subunit [Lactobacillus casei UW4]
gi|418010793|ref|ZP_12650564.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei Lc-10]
gi|418014909|ref|ZP_12654497.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei Lpc-37]
gi|190712636|emb|CAQ66642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
casei BL23]
gi|227187223|gb|EEI67290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239526046|gb|EEQ65047.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300438794|gb|ADK18560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
casei str. Zhang]
gi|327382362|gb|AEA53838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
casei LC2W]
gi|327385562|gb|AEA57036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
casei BD-II]
gi|406358211|emb|CCK22481.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
casei W56]
gi|410524950|gb|EKP99857.1| Clp protease ATP-binding subunit [Lactobacillus casei 12A]
gi|410525166|gb|EKQ00072.1| Clp protease ATP-binding subunit [Lactobacillus casei 32G]
gi|410528356|gb|EKQ03209.1| Clp protease ATP-binding subunit [Lactobacillus casei 21/1]
gi|410532642|gb|EKQ07344.1| Clp protease ATP-binding subunit [Lactobacillus casei CRF28]
gi|410535908|gb|EKQ10518.1| Clp protease ATP-binding subunit [Lactobacillus casei M36]
gi|410537809|gb|EKQ12376.1| Clp protease ATP-binding subunit [Lactobacillus casei A2-362]
gi|410539974|gb|EKQ14496.1| Clp protease ATP-binding subunit [Lactobacillus casei T71499]
gi|410545414|gb|EKQ19714.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei UCD174]
gi|410547694|gb|EKQ21920.1| Clp protease ATP-binding subunit [Lactobacillus casei UW4]
gi|410548040|gb|EKQ22260.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei UW1]
gi|410552609|gb|EKQ26626.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei Lpc-37]
gi|410553372|gb|EKQ27375.1| Clp protease, ATP-binding subunit ClpX [Lactobacillus casei Lc-10]
Length = 416
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIENIVKNRIGEKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E + +K + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 270 TDSNEQV----------------------DPDK-SLMQQIIPEDLMQFGIIPEFIGRIPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L LN++ LVRILTEPKNA+++QYQ L ++D DL F+P AL+AIA A+ + TGAR
Sbjct: 307 LAALEKLNEDDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQAIVRDTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME+++ D+M+++P SD+ V +T+ V P +
Sbjct: 367 GLRSIMEAIMQDTMFDLPSRSDVDKVVVTKSAVEGKAKPQLV 408
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADYDVERAEKGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
>gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp.
MWYL1]
gi|226706592|sp|A6VW21.1|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
sp. MWYL1]
Length = 426
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 142/219 (64%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GL+R+IS R + +GF
Sbjct: 216 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLERVISDRTEKSSIGF- 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ + + +VE DL+ FG+IPEFVGR P+
Sbjct: 275 --------------------SATVKSKEEGRSFSEAVHRVETEDLVKFGLIPEFVGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+ IL++PKNA+++QYQ LF ++ V+L F+PE+L+ A+LALE+KTGAR
Sbjct: 315 VATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPESLREAAKLALERKTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES LLD MYE+P +D++ V + ++ TAP
Sbjct: 375 GLRSILESALLDCMYELPTRNDVVKVVMDATSIRGETAP 413
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 183 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 219
>gi|26989025|ref|NP_744450.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
KT2440]
gi|38257486|sp|Q88KI9.1|CLPX_PSEPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|24983848|gb|AAN67914.1|AE016423_9 ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
putida KT2440]
Length = 442
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 228 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 287
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 288 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 326
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 327 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 386
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 387 GLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIEGTSQPLMI 428
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 193 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 247
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 248 PQQEFLQVDTRNILFIC 264
>gi|148548676|ref|YP_001268778.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
F1]
gi|386012907|ref|YP_005931184.1| protein ClpX [Pseudomonas putida BIRD-1]
gi|395444304|ref|YP_006384557.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
ND6]
gi|397698113|ref|YP_006535996.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
putida DOT-T1E]
gi|421521991|ref|ZP_15968640.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
LS46]
gi|166214807|sp|A5W634.1|CLPX_PSEP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|148512734|gb|ABQ79594.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
putida F1]
gi|313499613|gb|ADR60979.1| ClpX [Pseudomonas putida BIRD-1]
gi|388558301|gb|AFK67442.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
ND6]
gi|397334843|gb|AFO51202.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
putida DOT-T1E]
gi|402754252|gb|EJX14737.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
LS46]
Length = 427
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIEGTSQPLMI 413
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|312961788|ref|ZP_07776286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens WH6]
gi|311284047|gb|EFQ62630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens WH6]
Length = 438
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 224 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 283 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 322
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 323 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 382
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 383 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 424
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 189 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 243
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 244 PQQEFLQVDTRNILFIC 260
>gi|408481158|ref|ZP_11187377.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
R81]
Length = 427
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella microti
CCM 4915]
gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
BO2]
gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
inopinata BO1]
gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
4915]
gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
inopinata BO1]
gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
BO2]
Length = 424
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC
25840]
gi|166214760|sp|A5VQN3.1|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis
ATCC 25840]
Length = 427
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|365921026|ref|ZP_09445328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Cardiobacterium valvarum F0432]
gi|364576923|gb|EHM54219.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Cardiobacterium valvarum F0432]
Length = 375
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 143/220 (65%), Gaps = 21/220 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ VP + + + E++ V+TTNILF+ GA+ GL++LI++R + +GFG
Sbjct: 169 LLKLVEGTVAAVPPQGGRKHPQQELIHVNTTNILFICGGAFAGLEKLIAKRTEQGGIGFG 228
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A A+E+N + L+QVE DL+ FG+IPEFVGR PI
Sbjct: 229 AHVHTKA-----------------EADENN---NRLLQQVEPEDLVKFGLIPEFVGRLPI 268
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+++ LV ILTEPKNA+++Q++ +F + V L F+PEALQAIA+ A+ +KTGAR
Sbjct: 269 IALLDTLDEDALVHILTEPKNAIVRQFEKIFGYEDVALEFTPEALQAIAQKAISRKTGAR 328
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPS 238
GLR+I+E LLD+M+ +P I V +T DT+L+ +AP
Sbjct: 329 GLRSIVEQTLLDTMFVLPDQKGINKVTVTADTILQGSAPQ 368
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 136 KGIIYIDEIDKIARKSENLSITRDVSGEGVQQALLKL 172
>gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
sp. R2A62]
gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
sp. R2A62]
Length = 422
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 145/239 (60%), Gaps = 28/239 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIVGGAFAGLDKIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + L FL +E DL+ FG+IPEFVGR P+
Sbjct: 271 ADVREKNDKGIGEL---------------------FL-DLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+ ILTEPKNA+++QYQ LF +++ LTF+ +AL AIAR A+E+KTGAR
Sbjct: 309 LATLQDLDEDALITILTEPKNALVKQYQRLFELEETALTFTDDALTAIARRAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPG 257
GLR+I+E +LL++M+++PG D + V + E+ V + P I G E DK A G
Sbjct: 369 GLRSILEDILLETMFDLPGMDSVTEVVVNEEAVTSDAQPLMIHG-----EADKETAEAG 422
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 246
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus]
Length = 423
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 271 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 309 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 369 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 410
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 266 GEGVQQGMLKVSALA------AFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLK 316
GE V+ +LK+ A A IV++DEVDKI P I RDV GEGVQQ +LK
Sbjct: 156 GEDVENIILKLLQAADYNVERARSIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLK 213
Query: 317 VSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ + P G ++P ++ N +I
Sbjct: 214 IMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
R IV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RSIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|404399558|ref|ZP_10991142.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
fuscovaginae UPB0736]
Length = 427
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------TAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P YI
Sbjct: 372 GLRSILEGILLDTMYEIPSQSDVSKVVIDESVIEGKSQPLYI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|229591361|ref|YP_002873480.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
fluorescens SBW25]
gi|388466303|ref|ZP_10140513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
synxantha BG33R]
gi|440741132|ref|ZP_20920587.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
fluorescens BRIP34879]
gi|447917343|ref|YP_007397911.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas poae
RE*1-1-14]
gi|259491265|sp|C3JYJ9.1|CLPX_PSEFS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|229363227|emb|CAY50310.1| ATP-dependent specificity component of clpP serine protease,
chaperone [Pseudomonas fluorescens SBW25]
gi|388009883|gb|EIK71070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
synxantha BG33R]
gi|440373753|gb|ELQ10501.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
fluorescens BRIP34879]
gi|445201206|gb|AGE26415.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas poae
RE*1-1-14]
Length = 427
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|334129246|ref|ZP_08503051.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Methyloversatilis universalis FAM5]
gi|333445472|gb|EGK73413.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Methyloversatilis universalis FAM5]
Length = 421
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + VQVDTTNILFV GA++GL+++I R +GFG
Sbjct: 211 LLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFVCGGAFDGLEKVIRNRTEHVSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +S R+A A L+ VE DLI FG+IPEFVGR P+
Sbjct: 271 A-EVKSRDSRSAGEA---------------------LQDVEPEDLIKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++IL EPKNA+I+QYQ LF M+ V+L P ALQAIAR AL++KTGAR
Sbjct: 309 VATLQELDEDALIQILIEPKNALIKQYQKLFQMEGVELEVRPGALQAIARKALKRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ LLD+MYE+PG ++ V I E + T P
Sbjct: 369 GLRSIIEAALLDTMYELPGVENVAKVVIDEGVIEGETKP 407
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 176 AQQGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
PN ++ N ++
Sbjct: 231 PNQDFVQVDTTNILFVC 247
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 QGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|168043143|ref|XP_001774045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674591|gb|EDQ61097.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 135/198 (68%), Gaps = 15/198 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L + ++ RK + +GFG
Sbjct: 163 LLKMLEGTIVNVPEKGARKHPRGDHIQIDTKDILFICGGAFIELAKTVAERKQDSSIGFG 222
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+P A R L D A S+ L+ VE+ DLI +G+IPEF+GRFP+
Sbjct: 223 SPV--RASMRGNKLTDSAITSS-------------LLEMVESSDLISYGLIPEFIGRFPV 267
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEP+NA+ +QY+ +F+M+ V L ++ AL+ IA+ A+ K TGAR
Sbjct: 268 LVSLSALNEDQLVQVLTEPRNALGKQYKKMFSMNNVKLHYTDGALRRIAQKAIVKNTGAR 327
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+IME+LL ++MY+VP
Sbjct: 328 GLRSIMETLLTEAMYQVP 345
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 237 PSYIRGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
P+ +GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 126 PAAQQGIVYIDEVDKITKKAESVSISRDVSGEGVQQALLKM 166
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ ++ F GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 107 GEDVESILYKLLMVSEFNVPAAQQGIVYIDEVDKITKKAESVSISRDVSGEGVQQALLKM 166
>gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
Length = 422
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ N D++ +++E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVRNN--------DDRGVGEIFQELEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF +++ +L F+ EAL AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALVTILTKPKNALVKQYQRLFELEETELDFTDEALSAIAKRAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLL++M+E+PG + + V + E+ V + P I
Sbjct: 369 GLRSILEDLLLETMFELPGMESVTKVVVNEEAVTSDAQPLMI 410
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|443293552|ref|ZP_21032646.1| ATPase, chaperone subunit of serine protease [Micromonospora lupini
str. Lupac 08]
gi|385883410|emb|CCH20797.1| ATPase, chaperone subunit of serine protease [Micromonospora lupini
str. Lupac 08]
Length = 431
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLD++I R + GFG
Sbjct: 214 LLKMLEGTVANVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLDQIIESRTGQGGTGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R S++D + D QV D++ FG+IPEFVGR P+
Sbjct: 274 A--------RLRSVSD--------------RSTDDIFSQVMPEDMLKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++ LVRILTEP+NA+++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 312 ITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFDEPALEAIADQAMLRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAI+E +LL +MYEVP + D V IT + VL+N P+ +
Sbjct: 372 GLRAIIEEVLLSAMYEVPSNPDAARVLITREVVLENVNPTIV 413
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 216 KMLEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFIC 250
>gi|332981497|ref|YP_004462938.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
australiensis 50-1 BON]
gi|332699175|gb|AEE96116.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
australiensis 50-1 BON]
Length = 428
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA++G+D++I R EK +GFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRLGEKAMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ + +L LK + +DL+ FG+IPE VGR PI
Sbjct: 267 A---EIKTKKEQDVGEL-------------------LKHIMPQDLLKFGLIPEMVGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V H+L+++ L+ ILTEPKNA+I+QYQ LF MD V L F A+ A+A ALE+ TGAR
Sbjct: 305 IVTLHALDKKALMTILTEPKNALIKQYQKLFEMDGVTLEFEEAAIAAVADKALERNTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++L+ MYE+P DI ITEDT++ +T P I
Sbjct: 365 GLRAILEDIMLNIMYEIPSREDIEKCVITEDTIVNHTEPMII 406
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDVEKAERGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 210
>gi|149376711|ref|ZP_01894469.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
DG893]
gi|149358950|gb|EDM47416.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
DG893]
Length = 427
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT N+LF+ GA+ GLD++I R +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTGNMLFICGGAFAGLDKVIQERSERSSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V + +D K +K VE DL+ +G+IPEFVGR P+
Sbjct: 273 --------------------SALVKSPDDTKNTGDIIKDVETEDLVKYGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILTEPKNA+ +QYQ LF M+ V+L F +AL+A+AR A+E+KTGAR
Sbjct: 313 VATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V I E + + P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEHDVSKVVIDESVISGQSEPFKI 414
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
melitensis bv. 1 str. 16M]
gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
bv. 1 str. 9-941]
gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
melitensis biovar Abortus 2308]
gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
melitensis ATCC 23457]
gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
abortus str. 2308 A]
gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 2 str. 63/9]
gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 1 str. 16M]
gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 6 str. 870]
gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 4 str. 292]
gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 2 str. 86/8/59]
gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 9 str. C68]
gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 3 str. Tulya]
gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
neotomae 5K33]
gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 1 str. Rev.1]
gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
abortus bv. 5 str. B3196]
gi|376273161|ref|YP_005151739.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus A13334]
gi|384211473|ref|YP_005600555.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
melitensis M5-90]
gi|384408581|ref|YP_005597202.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
melitensis M28]
gi|384445167|ref|YP_005603886.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
melitensis NI]
gi|423166788|ref|ZP_17153491.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI435a]
gi|423170838|ref|ZP_17157513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI474]
gi|423173080|ref|ZP_17159751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI486]
gi|423178227|ref|ZP_17164871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI488]
gi|423180268|ref|ZP_17166909.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI010]
gi|423183400|ref|ZP_17170037.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI016]
gi|423185660|ref|ZP_17172274.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI021]
gi|423188796|ref|ZP_17175406.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI259]
gi|21263465|sp|Q8YHC7.1|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|68067919|sp|Q9L7X5.2|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|123727373|sp|Q2YPX2.1|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|254763837|sp|C0RJ80.1|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella
melitensis bv. 1 str. 16M]
gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX
[Brucella abortus bv. 1 str. 9-941]
gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A
(P-loop):Bacterial chromosomal replication initiator
protein, DnaA:AAA ATP [Brucella melitensis biovar
Abortus 2308]
gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
melitensis ATCC 23457]
gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
abortus str. 2308 A]
gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 1 str. 16M]
gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 4 str. 292]
gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 2 str. 86/8/59]
gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 6 str. 870]
gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 9 str. C68]
gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
abortus bv. 3 str. Tulya]
gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
neotomae 5K33]
gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 2 str. 63/9]
gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
abortus bv. 5 str. B3196]
gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
melitensis M28]
gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
melitensis M5-90]
gi|349743158|gb|AEQ08701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
melitensis NI]
gi|363400767|gb|AEW17737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
abortus A13334]
gi|374539416|gb|EHR10920.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI474]
gi|374543019|gb|EHR14503.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI435a]
gi|374543635|gb|EHR15117.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI486]
gi|374545466|gb|EHR16927.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI488]
gi|374548832|gb|EHR20279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI010]
gi|374549463|gb|EHR20906.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI016]
gi|374558454|gb|EHR29847.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI259]
gi|374559751|gb|EHR31136.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella
abortus bv. 1 str. NI021]
Length = 424
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|304391392|ref|ZP_07373334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
R2A130]
gi|303295621|gb|EFL89979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
R2A130]
Length = 427
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 146/224 (65%), Gaps = 25/224 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+A GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIAGGAFAGLDKIISDRGRQTGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V + ED K + F K +E DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------NVESPEDRKTGELF-KALEPEDLLRFGLIPEFVGRIPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV+IL+EPKNA+I+QYQ LF M++V L+F +AL+AIA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDSLVQILSEPKNALIKQYQRLFEMEEVTLSFQEDALRAIAQKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKN--TAPSYI 240
GLR+I+E +LLD+M+E+P + + V I+E+ V N T P YI
Sbjct: 371 GLRSIIEGILLDTMFELPSLEGVQEVVISEEVVNGNGSTRPLYI 414
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 248
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|302560652|ref|ZP_07312994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
griseoflavus Tu4000]
gi|302478270|gb|EFL41363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
griseoflavus Tu4000]
Length = 428
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKREMESKDQF-EEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|291439662|ref|ZP_06579052.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
ATCC 14672]
gi|291342557|gb|EFE69513.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
ATCC 14672]
Length = 428
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|301091465|ref|XP_002895917.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
[Phytophthora infestans T30-4]
gi|262096081|gb|EEY54133.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
[Phytophthora infestans T30-4]
Length = 705
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 145/230 (63%), Gaps = 20/230 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEG++VNVPEK + RGE + +DTTNILF+ GA+ GL++ ++RR + +GFG
Sbjct: 479 LLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFG 538
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + N +D+ + L Q E DL+ +G+IPEF+GRFP+
Sbjct: 539 A--------------QMPNMRL-----KDSNQIGQLLSQAEPEDLVSYGLIPEFIGRFPM 579
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ LV++L EPKN++++QY+ LF + V+ + AL+A+A AL K TGAR
Sbjct: 580 LVSTTGLSKDELVQVLNEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGAR 639
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
GLR+I E L+++M+++P +D+ V++ E+ +L + P IRG + LDE
Sbjct: 640 GLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGHKRPVLIRGEMTLDE 689
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 446 RGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKI 482
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 423 GEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKI 482
>gi|406939454|gb|EKD72472.1| hypothetical protein ACD_45C00667G0003 [uncultured bacterium]
Length = 422
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 136/219 (62%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT N+LF+ GA+ GL+++I R +GF
Sbjct: 210 LLKLIEGTVASVPPQGGRKHPQQEFIQVDTKNMLFICGGAFAGLEKVIRERSERSGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA + ++ED+K D L +VE DLI FG+IPE +GR P+
Sbjct: 269 --------------------SAEIHSKEDSKSIDQLLHEVEPADLIKFGLIPELIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LVRILTEPKNA+++QY+ LF MD L F ALQ IA +EKKTGAR
Sbjct: 309 VATLEELDKEALVRILTEPKNALVKQYRKLFEMDGASLEFRDSALQLIAERCVEKKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E +LLD+MYE+P +++ V I E +V +++P
Sbjct: 369 GLRSILEKVLLDTMYELPSLNNVAKVIIDESSVKGDSSP 407
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 278 ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334
A A GI+++DE+DKI P I RDV GEGVQQ +LK+ + P G
Sbjct: 173 AKAQTGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---R 227
Query: 335 RYPNTGYIWYRYPNTGYIW 353
++P +I N +I
Sbjct: 228 KHPQQEFIQVDTKNMLFIC 246
>gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
S19]
gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
8038]
gi|238689370|sp|B2S5W0.1|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19]
gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
8038]
Length = 424
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|334339587|ref|YP_004544567.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Desulfotomaculum ruminis DSM 2154]
gi|334090941|gb|AEG59281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Desulfotomaculum ruminis DSM 2154]
Length = 416
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+++LI R +K +GFG
Sbjct: 205 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKLILNRIGKKQMGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ + ++ L + DL+ FG+IPEFVGR P+
Sbjct: 265 A---EIQSKKDLKIGEI-------------------LASILPEDLLKFGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E LVRILTEPKNA+ +QY+ LF +D V L PEALQ +A+ AL++KTGAR
Sbjct: 303 IVTLEALDEEALVRILTEPKNALSKQYEKLFELDGVALEIQPEALQEVAKEALKRKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY++P DI V IT++ +LK P +I
Sbjct: 363 GLRAIMEDAMLNIMYDIPSREDISKVVITKEAILKKGDPLFI 404
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|167032911|ref|YP_001668142.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
GB-1]
gi|189044143|sp|B0KJG7.1|CLPX_PSEPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|166859399|gb|ABY97806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
putida GB-1]
Length = 427
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 140/217 (64%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+MYE+P + + +++V++ T+
Sbjct: 372 GLRSILEGVLLDTMYEIPSKKEVSKVVIDESVIEGTS 408
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
sp. MED121]
gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
sp. MED121]
Length = 425
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 140/219 (63%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GLDR+IS R + +GF
Sbjct: 215 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDRVISDRTEKGSIGF- 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E++K + VE DL+ FG+IPEFVGR P+
Sbjct: 274 --------------------SAVVKSKEEDKVFSDTVHNVETEDLVKFGLIPEFVGRLPV 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+ IL+EPKNA+ +QYQ LF ++ V+L F+ E+LQA A LALE+KTGAR
Sbjct: 314 VATLSELDEEALITILSEPKNALTKQYQHLFELEGVELEFTTESLQAAAELALERKTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES LLD MY++P +D++ V + +++ AP
Sbjct: 374 GLRSILESALLDCMYDLPSRTDVVKVVMDANSMKGEAAP 412
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 182 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 218
>gi|327398619|ref|YP_004339488.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
maritima DSM 10411]
gi|327181248|gb|AEA33429.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
maritima DSM 10411]
Length = 418
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 24/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG+IVNVP + + E +Q+DTTNILF+ GA+ GL+ +I+RR N+K +GF
Sbjct: 214 LLKLIEGSIVNVPPYGGRKHPQQEFIQIDTTNILFICGGAFEGLENIIARRINKKAIGFT 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
P D KEK LKQ DL+ +G+IPE +GR +
Sbjct: 274 NP-----------------------VNIDKKEKYNLLKQATPEDLMRYGLIPELIGRLHV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E LVRILTEPKNA+++QY +F+MD V LT + +AL+AIAR A+E+K GAR
Sbjct: 311 VATLNELNEEELVRILTEPKNALVKQYSKMFSMDNVKLTITDDALRAIARKAIERKVGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME +++D M+++P D+ I E+ VL P I+
Sbjct: 371 GLRSIMEEIMVDLMFKIPSMKDVKECIIDENVVLYGKQPKLIKS 414
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 278 ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334
ALA GIV++DE+DKI P I RDV GEGVQQ +LK+ + P Y
Sbjct: 177 ALAQKGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGSIVNVPP---YGGR 231
Query: 335 RYPNTGYIWYRYPNTGYIW 353
++P +I N +I
Sbjct: 232 KHPQQEFIQIDTTNILFIC 250
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 KGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 217
>gi|398847903|ref|ZP_10604777.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM84]
gi|398250861|gb|EJN36153.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM84]
Length = 427
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 140/217 (64%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+MYE+P + + +++V++ T+
Sbjct: 372 GLRSILEGVLLDTMYEIPSQKEVSKVVIDESVIEGTS 408
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|449519729|ref|XP_004166887.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
ClpX-like, partial [Cucumis sativus]
Length = 298
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 158/253 (62%), Gaps = 16/253 (6%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VP+ + + RG+ +Q+DT NILF+ GA+ GL++ IS R+++ +GFG
Sbjct: 44 LLKMLEGTVVDVPDTGARKHPRGDTIQMDTKNILFICGGAFVGLEKCISDRQHDSSIGFG 103
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ++ R DL K + L+ VE+ DLI +G+IPEFVGR PI
Sbjct: 104 AP-VRASMRTGKLTEDLV--------------KSSMLENVESGDLITYGLIPEFVGRCPI 148
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L+++ LV++LT+PKNA+ +QY+ + M+ V+L F+ AL+ IAR A++K TGAR
Sbjct: 149 LVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFTENALRMIARKAMKKNTGAR 208
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIH 259
GLR+I+E++L ++M+EVP S+ + + ++ + + S V D VD++
Sbjct: 209 GLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCGAKVLCD-VDELTQCSKSE 267
Query: 260 QLRDVGGEGVQQG 272
+R++ G + G
Sbjct: 268 IMRNLKGNDMVAG 280
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIV++DEVDKI ++ RDV GEGVQQ +LK+ + P+TG ++P
Sbjct: 9 AQRGIVYIDEVDKITKKSESLNSGRDVSGEGVQQALLKMLEGTVV-DVPDTG--ARKHPR 65
Query: 339 TGYIWYRYPNTGYIW 353
I N +I
Sbjct: 66 GDTIQMDTKNILFIC 80
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 11 RGIVYIDEVDKITKKSESLNSGRDVSGEGVQQALLKM 47
>gi|358012228|ref|ZP_09144038.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
P8-3-8]
Length = 436
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 142/224 (63%), Gaps = 22/224 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTANILFICGGAFSGLEKVVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++D+K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TADVKNKDDSKKLSELFRQVEAADLVRFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ AL++ TGAR
Sbjct: 310 IATLEELDEEALMQILTEPKNALTRQYQYLFEMENVDLIFEDSALRAVAKKALDRNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LL++MY++P D+ V I E + P Y G
Sbjct: 370 GLRSILENVLLETMYDLPSRQDVGTVIINEAVINDKAEPVYQAG 413
>gi|385227558|ref|YP_005787482.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SNT49]
gi|344332471|gb|AEN17501.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SNT49]
Length = 448
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 137/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK T P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQTEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|116333989|ref|YP_795516.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
brevis ATCC 367]
gi|122269327|sp|Q03QN7.1|CLPX_LACBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|116099336|gb|ABJ64485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
brevis ATCC 367]
Length = 418
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ RR ++ +GFG
Sbjct: 211 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEGIVKRRLGDQTIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S E Q S D+ ++ V DL++FG+IPEF+GR PI
Sbjct: 271 ADSQE--------------QHVLSSG-------DSLMQHVIPEDLLEFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LVRILTEPKNA+++QY+ L +D VDL F P AL+ +A+LA+ + TGAR
Sbjct: 310 LTALEKLDENDLVRILTEPKNALVKQYEKLLALDNVDLQFQPAALREMAKLAIARNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M+++P +D+ V IT +TV ++ P +
Sbjct: 370 GLRSIIEDVMRDIMFDLPSRTDVAKVVITPETVTEHAEPELV 411
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKLLQNADYDVDRAEKGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 215 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 246
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 KGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 214
>gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
flavescens SK114]
gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
flavescens SK114]
Length = 421
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV ++++N + A + VE DLI FG+IPE +GR P+
Sbjct: 272 A---------------------AVHSKDENADISALFETVEPEDLIKFGLIPELIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILTEPKNA+++QYQ LF M+ V L F +AL++IA+LA+E+KTGAR
Sbjct: 311 IATLAELDEDALVNILTEPKNALVKQYQTLFAMEDVGLEFEEDALRSIAKLAMERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E LLD+MY +P D+ V I ++ V K P R
Sbjct: 371 GLRSIVERCLLDTMYTLPDLKDVAKVVINKEVVEKGEQPKLFR 413
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 214 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 248
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|213521160|gb|ACJ50517.1| ATP-dependent protease ATP-binding subunit [Pseudomonas fluorescens
SS101]
Length = 438
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 224 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 283 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 322
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 323 LATLDELDEAALIQILTEPKNALTKQYGKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 382
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 383 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 424
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 189 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 243
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 244 PQQEFLQVDTRNILFIC 260
>gi|387894466|ref|YP_006324763.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
fluorescens A506]
gi|423692341|ref|ZP_17666861.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens SS101]
gi|387159491|gb|AFJ54690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens A506]
gi|388000622|gb|EIK61951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens SS101]
Length = 427
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYGKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|339486804|ref|YP_004701332.1| ATP-dependent protease, ATP-binding subunit ClpX [Pseudomonas
putida S16]
gi|431801809|ref|YP_007228712.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
HB3267]
gi|338837647|gb|AEJ12452.1| ATP-dependent protease, ATP-binding subunit ClpX [Pseudomonas
putida S16]
gi|430792574|gb|AGA72769.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
HB3267]
Length = 427
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMENVDLEFRSDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIDGTSQPLMI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|289523085|ref|ZP_06439939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503628|gb|EFD24792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 427
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 143/223 (64%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP K + + +QVDT+NILF+ GA++G++ +I++R N++ +GFG
Sbjct: 220 LLRLLEGTVSNVPPKGGRKHPYQDFIQVDTSNILFICGGAFDGIENIIAKRINKRVIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
D+ + S + LK+V+ DL+ +G IPEF+GR P+
Sbjct: 280 G--------------DIIGKKVEASWK--------ILKEVQPEDLMMYGFIPEFIGRIPV 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP L++E LV IL EPKN++++QYQ LF+ + V+L F+ AL+AIA A E+KTGAR
Sbjct: 318 IVPLEGLHEESLVHILLEPKNSLVKQYQELFSYEGVELEFTEAALKAIAHQAQERKTGAR 377
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSYI 240
GLR+IME+L+LD MYE+P ++ V IT + VL+ +P YI
Sbjct: 378 GLRSIMENLMLDIMYELPNIAGEVAKVKITGECVLEGASPIYI 420
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 278 ALAAFGIVFLDEVDKIGA---VPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334
ALA GIV++DE+DKI P I RDV GEGVQQG+L++ + P G
Sbjct: 183 ALAERGIVYIDEIDKIARKSYSPSI--TRDVSGEGVQQGLLRLLEGTVSNVPPKGG---R 237
Query: 335 RYPNTGYIWYRYPNTGYIW 353
++P +I N +I
Sbjct: 238 KHPYQDFIQVDTSNILFIC 256
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGA---VPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQG+L++
Sbjct: 187 RGIVYIDEIDKIARKSYSPSI--TRDVSGEGVQQGLLRL 223
>gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Faecalibacterium prausnitzii L2-6]
Length = 443
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 139/213 (65%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E +Q+DTTNILF+ GA++GLD+ I RR ++ LGFG
Sbjct: 230 LLKILEGTVSNVPPQGGRKHPQQEFIQIDTTNILFICGGAFDGLDKYILRRTDKSALGFG 289
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ +L D N S A + A L++VE DL+ FG+IPE +GR P+
Sbjct: 290 S-----------ALKD--NSSEA---------EKALLRKVEPHDLVKFGLIPELIGRLPV 327
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+L EP+N++++QY+ L +MD V+L + EAL AIAR +E+KTGAR
Sbjct: 328 ITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELDITDEALHAIARKTIERKTGAR 387
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTV 231
GLR++ME++L+ MY+VP I+ V I EDTV
Sbjct: 388 GLRSVMENILMPIMYDVPNDPTIIRVTIDEDTV 420
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDVGGEGVQQ +L
Sbjct: 174 GEDVENILLKLIQAADFDVQKAQIGIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALL 231
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P +I N +I
Sbjct: 232 KILEGTVSNVPPQGG---RKHPQQEFIQIDTTNILFIC 266
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDVGGEGVQQ +LK+
Sbjct: 198 GIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALLKI 233
>gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
succinogenes 130Z]
gi|171704241|sp|A6VME2.1|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Actinobacillus succinogenes 130Z]
Length = 411
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGTI VP + + + +M++VDT+ ILF+ GA+ GLD++I +R ++G G
Sbjct: 208 LLKMIEGTIAAVPPQGGRKHPQQDMIRVDTSKILFICGGAFAGLDKIIEKRV---HVGSG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V E+D KQ+E DLI FGMIPEF+GR P+
Sbjct: 265 I-----------------GFNAEVKGEQDELTLTDLFKQIETEDLIKFGMIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++ L+ ILTEPKNA+ +QYQ LF ++ V+L F+PE+L+A+A+ AL +KTGAR
Sbjct: 308 IAPLSELDENALISILTEPKNALTKQYQALFGLEDVELEFTPESLKAMAKKALARKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MY++P + L V + ED + K P I
Sbjct: 368 GLRSIVEGILLDTMYDLPSQENLAKVIVDEDVIEKGEKPKLI 409
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 22/87 (25%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVP 297
+GI+++DE+DKI A P I RDV GEGVQQ +LK+ I AVP
Sbjct: 175 QGIIYIDEIDKITRKSANPSI--TRDVSGEGVQQALLKMIE------------GTIAAVP 220
Query: 298 GIHQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ M++V TS + +
Sbjct: 221 -----PQGGRKHPQQDMIRVDTSKILF 242
>gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
14600]
gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
14600]
Length = 419
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 139/216 (64%), Gaps = 23/216 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E++Q+DTTNILF+ GA++GL+++I +R +GFG
Sbjct: 217 LLKIIEGTMASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLEKIIEQRIEAGSMGFG 276
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR L L+QV +D + FG+IPEF+GR PI
Sbjct: 277 ANIVDKKNRRIGDL----------------------LRQVLPQDFVKFGLIPEFIGRVPI 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V + L +E ++ ILTEPKN++++QY+ LF MD LTF+ EAL+ IA+ ++E+KTGAR
Sbjct: 315 NVALNQLTEEDMIHILTEPKNSLVKQYEALFAMDDTRLTFTEEALREIAKKSIERKTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKN 234
GLR+IME++++DSMYE+P D + + +T+ V +N
Sbjct: 375 GLRSIMENVMMDSMYEIPSDDSVKELTVTDQMVDEN 410
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 161 GEDVENIILKLIQAADYDVEKAQLGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 220
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P I N +I
Sbjct: 221 IEGTMASVPPQGG---RKHPQQELIQIDTTNILFIC 253
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 185 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 220
>gi|188528163|ref|YP_001910850.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi470]
gi|188144403|gb|ACD48820.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
Shi470]
Length = 448
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|170720928|ref|YP_001748616.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
W619]
gi|229484079|sp|B1J693.1|CLPX_PSEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|169758931|gb|ACA72247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
putida W619]
Length = 427
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 140/217 (64%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYARLFEMESVDLEFRSDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+MYE+P + + +++V++ T+
Sbjct: 372 GLRSILEGVLLDTMYEIPSQKEVSKVVIDESVIEGTS 408
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
medicae WSM419]
gi|166215207|sp|A6U7U8.1|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
medicae WSM419]
Length = 425
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRAPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + + V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVKGTARPLYI 412
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|256556953|gb|ACU83575.1| ATP-dependent protease Clp ATPase subunit [uncultured bacterium
HF130_AEPn_2]
Length = 427
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|424795847|ref|ZP_18221655.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|433679139|ref|ZP_20510915.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440731336|ref|ZP_20911361.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
translucens DAR61454]
gi|422795261|gb|EKU23984.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|430815743|emb|CCP41465.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440373298|gb|ELQ10057.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
translucens DAR61454]
Length = 428
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 142/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I +R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDVGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKREVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L+RILTEPKNA+ +Q++ LF M+ V+L F P+AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIRILTEPKNAITKQFKKLFEMEGVELEFRPDALLAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|406837289|ref|ZP_11096883.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus vini
DSM 20605]
Length = 415
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ RR ++ +GFG
Sbjct: 209 LLKILEGTIANVPPQGGRKHPQQEFIQLDTTNILFIVGGAFDGIEEIVKRRLGDQTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +AE E + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 269 A-----------------------TAENKLDESKSLMQQIIPEDLLKFGLIPEFIGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L + LVRILTEPKNA+++QY L MD V LTF+P AL+ +ARLA+E+KTGAR
Sbjct: 306 LTALEKLTEGDLVRILTEPKNALVKQYAKLMKMDGVKLTFTPAALKEVARLAIERKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ + D M++ P + I V +T +V N +P I
Sbjct: 366 GLRSIIENTMRDVMFDTPSQENIAEVIVTPKSVDGNNSPQII 407
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENILLKLLQNADYDVERAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 213 LEGTIANVPPQGG---RKHPQQEFIQLDTTNILFI 244
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
>gi|392959641|ref|ZP_10325123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans DSM 17108]
gi|421052493|ref|ZP_15515482.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelosinus
fermentans B4]
gi|421058666|ref|ZP_15521333.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans B3]
gi|421066385|ref|ZP_15527999.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans A12]
gi|421070551|ref|ZP_15531683.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans A11]
gi|392443224|gb|EIW20775.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelosinus
fermentans B4]
gi|392448177|gb|EIW25380.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans A11]
gi|392456194|gb|EIW32948.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans DSM 17108]
gi|392456277|gb|EIW33028.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans A12]
gi|392460321|gb|EIW36636.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans B3]
Length = 420
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 139/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D+LIS R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKLISARTGKKNMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S G++ ++ DL L+Q+ DL+ FG+IPEFVGR P+
Sbjct: 268 A-EIRSKGKK--NIGDL-------------------LQQILPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRIL EPKNA+++QYQ +D V L F +AL AIA+ AL++ TGAR
Sbjct: 306 VVTLDALDEQALVRILLEPKNALVKQYQKFLEIDNVQLEFKEDALDAIAKEALKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++ + MYEVP +D+ +T++ VL P
Sbjct: 366 GLRAIIEGIMCNVMYEVPSRADVAKCTVTKEVVLSKEEP 404
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|333368409|ref|ZP_08460608.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp.
1501(2011)]
gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp.
1501(2011)]
Length = 425
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +P + E++QVDT+NIL + GA++GLD++I +R + +GF
Sbjct: 225 LLKLIEGTVAAIPPHGGRKHPNQELIQVDTSNILIIVGGAFSGLDKVIQQRTEKSGIGF- 283
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++ED K+ KQVE DLI FG+IPE +GR P+
Sbjct: 284 --------------------NAEVKSKEDGKQLTELFKQVEPEDLIKFGLIPELIGRLPV 323
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++ILTEPKNA+I+QYQ LF M+ +LTF+ E L+AIA A+E+KTGAR
Sbjct: 324 IATLEELDEDALMQILTEPKNAIIKQYQYLFEMEDAELTFTEEGLKAIAHKAMERKTGAR 383
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ LLD+MYE+P + +++V+ + A I
Sbjct: 384 GLRSIVENALLDTMYELPSMSEAKTVVVDESVINDGATPKI 424
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 34/178 (19%)
Query: 184 LQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED--TVLKNT------ 235
L+ A+LA ++K G D+M E+ S+IL++ T T+L T
Sbjct: 100 LKVAAKLADDRKQAKIGAD--------DAMVELSKSNILLIGPTGSGKTLLAQTLARMLD 151
Query: 236 APSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVS----ALAAFGIVFLDEVD 291
P + L E +G DV E + Q +L+ + A GI+++DE+D
Sbjct: 152 VPFAMADATTLTEAGYVG--------EDV--ENIVQKLLQAADYDVERAEQGIIYVDEID 201
Query: 292 KIGAV-PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
KI + RDV GEGVQQ +LK+ + P+ G ++PN I N
Sbjct: 202 KISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGG---RKHPNQELIQVDTSN 256
>gi|109946697|ref|YP_663925.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
acinonychis str. Sheeba]
gi|109713918|emb|CAJ98926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
acinonychis str. Sheeba]
Length = 436
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 231 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 289
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR PI
Sbjct: 290 --TQEKMSK---------------------KEQEAILHLVQTHDLVSYGLIPELIGRLPI 326
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 327 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 386
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 387 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 427
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 196 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 252
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 253 GNFIQIDTSDILFIC 267
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 198 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 234
>gi|385215298|ref|YP_005775254.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F32]
gi|317179825|dbj|BAJ57611.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F32]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|29831992|ref|NP_826626.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
avermitilis MA-4680]
gi|46576506|sp|Q820F8.1|CLPX_STRAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|29609110|dbj|BAC73161.1| putative ATP-dependent Clp Protease ATP binding subunit
[Streptomyces avermitilis MA-4680]
Length = 428
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL++LI R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|384889990|ref|YP_005764292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
pylori v225d]
gi|297380556|gb|ADI35443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori v225d]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|421074040|ref|ZP_15535082.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans JBW45]
gi|392527837|gb|EIW50921.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pelosinus
fermentans JBW45]
Length = 420
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 139/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D+LIS R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKLISARTGKKNMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S G++ ++ DL L+Q+ DL+ FG+IPEFVGR P+
Sbjct: 268 A-EIRSKGKK--NIGDL-------------------LQQILPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRIL EPKNA+++QYQ +D V L F +AL AIA+ AL++ TGAR
Sbjct: 306 VVTLDALDEQALVRILLEPKNALVKQYQKFLEIDNVQLEFKEDALDAIAKEALKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++ + MYEVP +D+ +T++ VL P
Sbjct: 366 GLRAIIEGIMCNVMYEVPSRADVAKCTVTKEVVLSKEEP 404
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|291278626|ref|YP_003495461.1| ATP-dependent Clp protease ATP-binding subunit [Deferribacter
desulfuricans SSM1]
gi|290753328|dbj|BAI79705.1| ATP-dependent Clp protease, ATP-binding subunit [Deferribacter
desulfuricans SSM1]
Length = 410
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ N+P + + E +Q+DTTNILF+ GA+ GL+ +I RR +K LGF
Sbjct: 203 LLKIIEGTVANIPPQGGRKHPHQEYLQIDTTNILFICGGAFAGLEEVIKRRIGKKSLGFN 262
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ ++ NQ+ +D L+QV+ DLI +G+IPEFVGR P+
Sbjct: 263 S--------------EIENQNKL--------SRDEILRQVQPEDLIKYGLIPEFVGRLPV 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L++E L++ILTEPKN++++Q+Q +F +D V LTF+ AL+AIA+ A+ +KTGAR
Sbjct: 301 IATLHDLDEEALIKILTEPKNSLVKQFQEIFKLDNVKLTFTQGALRAIAKKAIARKTGAR 360
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHI-TEDTVLKNTAPSYI 240
GLR+I+E +LD MY++P D L I ED + K P I
Sbjct: 361 GLRSIVEEAMLDLMYQIPSMDGLKECIVNEDVINKKAEPILI 402
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+F+DE+DKI P I RDV GEGVQQ +L
Sbjct: 147 GEDVENVVLKLIQAADYDIERASKGIIFIDEIDKISRKTDSPSIT--RDVSGEGVQQALL 204
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ Y+ N +I
Sbjct: 205 KIIEGTVANIPPQGG---RKHPHQEYLQIDTTNILFIC 239
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+F+DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 170 KGIIFIDEIDKISRKTDSPSIT--RDVSGEGVQQALLKI 206
>gi|241896578|ref|ZP_04783874.1| ATP-dependent protease ATP-binding subunit [Weissella
paramesenteroides ATCC 33313]
gi|241870170|gb|EER73921.1| ATP-dependent protease ATP-binding subunit [Weissella
paramesenteroides ATCC 33313]
Length = 415
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI NVP + + E +Q+DTTNILF+ GA+ G+++++ R K +GFG
Sbjct: 213 LLKMLEGTIANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIEQMVKERLGAKVIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
D Q S + + ++QV DL++FG+IPEF+GR PI
Sbjct: 273 T--------------DAKTQQLQSSDK-------SIMQQVLPEDLMNFGLIPEFIGRLPI 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L + LVRILTEPKNA+++QYQ L ++ VDL F+ +AL+A+A LA+E++TGAR
Sbjct: 312 LTALEELTESDLVRILTEPKNALVKQYQALLALEDVDLKFTDDALKAMAHLAIERETGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M++VP D+ V ITE VL+ P +
Sbjct: 372 GLRSIIEEVMRDVMFDVPSREDVTGVVITEGAVLRQDEPELV 413
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADYDVERAETGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPNQEFIQIDTTNILFI 248
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
>gi|217034446|ref|ZP_03439859.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
gi|385216788|ref|YP_005778264.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F16]
gi|385248526|ref|YP_005776745.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F57]
gi|420396747|ref|ZP_14895965.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1313]
gi|420407769|ref|ZP_14906933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6311]
gi|216943116|gb|EEC22590.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
gi|317176837|dbj|BAJ54626.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F16]
gi|317181320|dbj|BAJ59104.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F57]
gi|393012409|gb|EJB13587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1313]
gi|393021227|gb|EJB22361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6311]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|425789911|ref|YP_007017831.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Aklavik117]
gi|425628226|gb|AFX91694.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Aklavik117]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
gardneri ATCC 19865]
gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
gardneri ATCC 19865]
Length = 428
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I +R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|260575567|ref|ZP_05843565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
sp. SW2]
gi|259022210|gb|EEW25508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
sp. SW2]
Length = 421
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIIAQRNKGSAIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ED + F K++E DL+ FG+IPEFVGR P+
Sbjct: 269 AE---------------------VKGPEDRGVGELF-KELEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV ILTEPKNA+++QYQ LF ++ V LTF+P+AL AIA+ A+++KTGAR
Sbjct: 307 IATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVTLTFTPDALVAIAKRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+IME +LLD+M+E+PG + + V + ED V P
Sbjct: 367 GLRSIMEDILLDTMFELPGMAGVTEVVVKEDAVNAGAKP 405
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|199598204|ref|ZP_03211626.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
HN001]
gi|229552142|ref|ZP_04440867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus LMS2-1]
gi|258508347|ref|YP_003171098.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus GG]
gi|258539556|ref|YP_003174055.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus Lc 705]
gi|385828016|ref|YP_005865788.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
GG]
gi|385835206|ref|YP_005872980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus ATCC 8530]
gi|418070566|ref|ZP_12707841.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus R0011]
gi|423078113|ref|ZP_17066800.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus ATCC 21052]
gi|199590965|gb|EDY99049.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
HN001]
gi|229314444|gb|EEN80417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus LMS2-1]
gi|257148274|emb|CAR87247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus GG]
gi|257151232|emb|CAR90204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus Lc 705]
gi|259649661|dbj|BAI41823.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
GG]
gi|355394697|gb|AER64127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus ATCC 8530]
gi|357539986|gb|EHJ24003.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus R0011]
gi|357552493|gb|EHJ34266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
rhamnosus ATCC 21052]
Length = 416
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIENIVKNRIGEKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
ST NQ + D + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 270 TDST--------------NQ-----VDPDK----SLMQQIIPEDLMQFGIIPEFIGRIPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L LN+ LVRILTEPKNA+++QYQ L ++D DL F+P AL+AIA A+ + TGAR
Sbjct: 307 LAALEKLNESDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQAIVRDTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME+++ D+M+++P SD+ V +T+ V P +
Sbjct: 367 GLRSIMEAIMQDTMFDLPSRSDVDKVVVTKSAVEGKAKPQLV 408
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADYDVERAEKGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
>gi|386751745|ref|YP_006224965.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi417]
gi|384558003|gb|AFH98471.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi417]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
mucosa C102]
gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
mucosa C102]
Length = 421
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 22/224 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV ++++N + A + VE DLI FG+IPE +GR P+
Sbjct: 272 A---------------------AVHSKDENADISALFETVEPEDLIKFGLIPELIGRLPM 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILTEPKNA+++QYQ LF M+ V L F +AL++IA+LA+E+KTGAR
Sbjct: 311 IATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVSLEFEEDALRSIAKLAMERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E LLD+MY +P D+ V I ++ V K P R
Sbjct: 371 GLRSIVERCLLDTMYALPDLKDVAKVVINKEVVEKGDQPKLFRA 414
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 214 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 248
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|384895408|ref|YP_005769397.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
35A]
gi|384898397|ref|YP_005773776.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F30]
gi|420400892|ref|ZP_14900091.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY3281]
gi|420402755|ref|ZP_14901943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6081]
gi|315586024|gb|ADU40405.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
35A]
gi|317178339|dbj|BAJ56127.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
F30]
gi|393016222|gb|EJB17382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6081]
gi|393016500|gb|EJB17659.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY3281]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum
lavamentivorans DS-1]
gi|171769684|sp|A7HY53.1|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum
lavamentivorans DS-1]
Length = 421
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++I +R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIGQRGKGAGIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V + ED + D LK +E DL+ FG+IPEFVGR P+
Sbjct: 270 AK---------------------VQSVEDRRTGD-ILKDLEPEDLLKFGLIPEFVGRMPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L+ ILT+PKNA+++QY+ LF M+ V LTFS EAL+A++R A+E+KTGAR
Sbjct: 308 LATLEDLDEEALLTILTQPKNALVKQYERLFEMENVRLTFSEEALRAVSRKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LLD+M+E+P + + V I+ + V P YI
Sbjct: 368 GLRSILESILLDTMFELPTLEGVEEVVISAEVVEGKARPLYI 409
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|425790305|ref|YP_007018222.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Aklavik86]
gi|425628620|gb|AFX89160.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Aklavik86]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|408823479|ref|ZP_11208369.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
geniculata N1]
Length = 429
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLDR+I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDRVIQARSTDVGSIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L+RILTEPKNA+ +Q++ LF M+ V+L F P+AL AIAR AL++KTGA
Sbjct: 312 VVATLEELDEPALIRILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MY++P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEHKSEPYL 413
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 216
>gi|384887072|ref|YP_005761583.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
gi|420405975|ref|ZP_14905148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6271]
gi|261838902|gb|ACX98667.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
gi|393021794|gb|EJB22924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6271]
Length = 448
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. citri str. 306]
gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. vasculorum NCPPB 702]
gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. musacearum NCPPB 4381]
gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
vesicatoria ATCC 35937]
gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
perforans 91-118]
gi|346723959|ref|YP_004850628.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. citrumelo F1]
gi|381170419|ref|ZP_09879576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|390990706|ref|ZP_10260987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|418517008|ref|ZP_13083176.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
gi|23813860|sp|Q8PNI4.1|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|123585731|sp|Q3BWQ0.1|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
vesicatoria ATCC 35937]
gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
perforans 91-118]
gi|346648706|gb|AEO41330.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. citrumelo F1]
gi|372554559|emb|CCF67962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|380689080|emb|CCG36063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|410706221|gb|EKQ64683.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
Length = 428
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I +R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|384894895|ref|YP_005768944.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Sat464]
gi|308064149|gb|ADO06036.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Sat464]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|339021746|ref|ZP_08645738.1| Clp protease ATP-binding subunit ClpX [Acetobacter tropicalis NBRC
101654]
gi|338751242|dbj|GAA09042.1| Clp protease ATP-binding subunit ClpX [Acetobacter tropicalis NBRC
101654]
Length = 421
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTN+LF+ GA+ GLD++I+ R +GFG
Sbjct: 209 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLDKIIAARGKGTGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L VE DL+ FG+IPEF+GR P+
Sbjct: 269 ADVRSPDDRRMGEI----------------------LHDVEPEDLMKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L+RILTEPKNA+++QYQ LF M+ V L+F+ +AL+AIA A+++KTGAR
Sbjct: 307 LATLGDLDEAALIRILTEPKNALVKQYQRLFQMEDVQLSFTDDALKAIADRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+IMES+L+ +M+++PG D + V + D + T+P Y+ G
Sbjct: 367 GLRSIMESILMSTMFDLPGLDNVEEVVVNRDVAEEKTSPVYVYG 410
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNMLFIC 245
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 212
>gi|395649557|ref|ZP_10437407.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 427
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|333370326|ref|ZP_08462337.1| ATP-dependent Clp protease ATP-binding subunit [Desmospora sp.
8437]
gi|332978058|gb|EGK14796.1| ATP-dependent Clp protease ATP-binding subunit [Desmospora sp.
8437]
Length = 423
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DT NILFV GA++GL+ +I RR +K +GFG
Sbjct: 211 LLKILEGTVASVPPQGGRKHPHQEFIQIDTGNILFVCGGAFDGLEPIIKRRIGKKVIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S D+ ++ +LK V DL+ FG+IPEFVGR P+
Sbjct: 271 ADSNT-----------------------DDLKQGEYLKMVLPEDLLRFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+Q+ LVRILTEPKNA+++QYQ L MD V LTF +AL+AIA A+ + TGAR
Sbjct: 308 ISTLEPLDQDALVRILTEPKNALVKQYQKLLEMDDVKLTFEEDALKAIADEAIRRNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+ES++LD M+++P D+ +TE TV AP
Sbjct: 368 GLRAIIESIMLDVMFDLPSRDDVSECVVTEATVRNKVAP 406
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 155 GEDVENILLKLIQAADYDVEKAERGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWY 354
K+ + P G ++P+ +I +TG I +
Sbjct: 213 KILEGTVASVPPQGG---RKHPHQEFIQI---DTGNILF 245
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 178 RGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 214
>gi|384893361|ref|YP_005767454.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Cuz20]
gi|386753302|ref|YP_006226521.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi169]
gi|386754840|ref|YP_006228058.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi112]
gi|308062658|gb|ADO04546.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Cuz20]
gi|384559560|gb|AFI00028.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi169]
gi|384561098|gb|AFI01565.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Shi112]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
subflava NJ9703]
gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
subflava NJ9703]
Length = 421
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV ++++N + A + VE DLI FG+IPE +GR P+
Sbjct: 272 A---------------------AVHSKDENADISALFETVEPEDLIKFGLIPELIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILTEPKNA+++QYQ LF M+ V L F +AL++IA+LA+E+KTGAR
Sbjct: 311 IATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIAKLAMERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E LLD+MY +P D+ V I ++ V K P R
Sbjct: 371 GLRSIVERCLLDTMYTLPDLKDVAKVVINKEVVEKGEQPKLFR 413
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 214 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 248
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|345850741|ref|ZP_08803732.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
zinciresistens K42]
gi|345637782|gb|EGX59298.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
zinciresistens K42]
Length = 427
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|384898055|ref|YP_005773483.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Lithuania75]
gi|317013160|gb|ADU83768.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Lithuania75]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 3 str. Ether]
gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
melitensis bv. 3 str. Ether]
Length = 424
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IAMLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|385229060|ref|YP_005788993.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Puno120]
gi|344335498|gb|AEN15942.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Puno120]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|308183486|ref|YP_003927613.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori PeCan4]
gi|308065671|gb|ADO07563.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori PeCan4]
Length = 452
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|222622641|gb|EEE56773.1| hypothetical protein OsJ_06335 [Oryza sativa Japonica Group]
Length = 479
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 223 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFQ 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP + ++AE + + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 283 AP-----------IRSNMRTGGVINAEITS----SLLESVESGDLIAYGLIPEFVGRFPI 327
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LT+PKNA+ +QY LF M+ V L F+ +AL+ I++ A+ K TGAR
Sbjct: 328 LVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLISKRAIAKNTGAR 387
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTV 231
GLR+I+ESLL +SMYE+P G D I V + ED+V
Sbjct: 388 GLRSILESLLTESMYEIPEIRTGKDKIDAVVVDEDSV 424
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI I+ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 191 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 247
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 248 IQIDTKNILFIC 259
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI I+ RDV GEGVQQ +LK+
Sbjct: 190 QGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKM 226
>gi|419861330|ref|ZP_14383968.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
gi|387982399|gb|EIK55906.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
Length = 430
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDCVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|387781727|ref|YP_005792440.1| ATP-dependent C1p protease [Helicobacter pylori 51]
gi|261837486|gb|ACX97252.1| ATP-dependent C1p protease [Helicobacter pylori 51]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|407775743|ref|ZP_11123035.1| ATP-dependent protease ATP-binding subunit ClpX [Thalassospira
profundimaris WP0211]
gi|407281104|gb|EKF06668.1| ATP-dependent protease ATP-binding subunit ClpX [Thalassospira
profundimaris WP0211]
Length = 421
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 129/198 (65%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIVGGAFAGLDKVISQRGRGSAIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RRA + L++VE DL+ FG+IPEF+GR P+
Sbjct: 270 ADVRGPDERRAGDV----------------------LREVEPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+ E LV+ILTEPKNA+I+QYQ LF M+ V LTF +AL+AIA A+E+KTGAR
Sbjct: 308 LATLEDLDNEALVQILTEPKNALIKQYQRLFDMEDVKLTFQTDALKAIADKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+IME +LL++M+++P
Sbjct: 368 GLRSIMEGILLETMFDLP 385
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 245
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|418475012|ref|ZP_13044452.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
coelicoflavus ZG0656]
gi|371544359|gb|EHN73079.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
coelicoflavus ZG0656]
Length = 428
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F +QV DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------QIRSKREIESKDQF-EQVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QY+ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|15603842|ref|NP_246916.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. Pm70]
gi|378774980|ref|YP_005177223.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pasteurella
multocida 36950]
gi|383310943|ref|YP_005363753.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
subsp. multocida str. HN06]
gi|386834992|ref|YP_006240309.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. 3480]
gi|417852110|ref|ZP_12497752.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|417854852|ref|ZP_12500119.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|421264725|ref|ZP_15715691.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|425064714|ref|ZP_18467839.1| ATP-dependentlp protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida X73]
gi|13431416|sp|P57981.1|CLPX_PASMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|12722416|gb|AAK04061.1| ClpX [Pasteurella multocida subsp. multocida str. Pm70]
gi|338217273|gb|EGP03162.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|338217779|gb|EGP03618.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|356597528|gb|AET16254.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pasteurella
multocida 36950]
gi|380872215|gb|AFF24582.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
subsp. multocida str. HN06]
gi|385201695|gb|AFI46550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. 3480]
gi|401687837|gb|EJS83534.1| ATP-dependent protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|404380900|gb|EJZ77389.1| ATP-dependentlp protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida X73]
Length = 411
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R ++G G
Sbjct: 207 LLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKVIEKRV---HVGSG 263
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V +++D +QVE DL+ FG+IPEF+GR P+
Sbjct: 264 I-----------------GFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E LV+ILTEPKNA+I+QYQ LF+++ V L FSPEAL A+A+ AL +KTGAR
Sbjct: 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITE-DTVLKNTAPSYI 240
GLR+I+E++LLD+MY++P L I E T+ N P+ +
Sbjct: 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLV 408
>gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. campestris str. 8004]
gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. campestris str. B100]
gi|384426844|ref|YP_005636201.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
campestris pv. raphani 756C]
gi|23813857|sp|Q8PBY5.1|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|81304479|sp|Q4URL5.1|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|229485950|sp|B0RTF5.1|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
campestris pv. campestris]
gi|341935944|gb|AEL06083.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
campestris pv. raphani 756C]
Length = 428
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSNDAGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|398893208|ref|ZP_10646002.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM55]
gi|398184566|gb|EJM72012.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM55]
Length = 427
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|387907396|ref|YP_006337730.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori XZ274]
gi|387572331|gb|AFJ81039.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori XZ274]
Length = 448
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|302671761|ref|YP_003831721.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
proteoclasticus B316]
gi|302396234|gb|ADL35139.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
proteoclasticus B316]
Length = 422
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E++Q+DT+NILF+ GA++GLD+++ R + +GF
Sbjct: 212 LLKIVEGTVASVPPQGGRKHPHQELIQIDTSNILFICGGAFDGLDKIVEARLDRNSIGFN 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++A++S +E LK+V +DL+ FG+IPEFVGR PI
Sbjct: 272 A--------------EIADKS--------EREIGEVLKEVTPQDLVKFGLIPEFVGRVPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E L+RILTEPKNA+++QYQ LF D V LTF EA+ IA++A E++TGAR
Sbjct: 310 TVTLEGLSKEALMRILTEPKNALVKQYQKLFDFDDVKLTFEDEAVHKIAQMAYERETGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR+IME ++D MYE+P D + + D + T+ I
Sbjct: 370 GLRSIMEKTMMDVMYEIPSDDTISECVITDASVDGTSQPLI 410
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A +GIV++DE+DKI + RDV GEGVQQ +LK+ + P G ++P+
Sbjct: 177 AQYGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGG---RKHPH 233
Query: 339 TGYIWYRYPNTGYIW 353
I N +I
Sbjct: 234 QELIQIDTSNILFIC 248
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 180 GIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 215
>gi|420422648|ref|ZP_14921725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4110]
gi|393036582|gb|EJB37621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4110]
Length = 448
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|425066830|ref|ZP_18469950.1| ATP-dependentlp protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida P1059]
gi|404380616|gb|EJZ77106.1| ATP-dependentlp protease ATP-binding subunit ClpX [Pasteurella
multocida subsp. gallicida P1059]
Length = 411
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R ++G G
Sbjct: 207 LLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKVIEKRV---HVGSG 263
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V +++D +QVE DL+ FG+IPEF+GR P+
Sbjct: 264 I-----------------GFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E LV+ILTEPKNA+I+QYQ LF+++ V L FSPEAL A+A+ AL +KTGAR
Sbjct: 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITE-DTVLKNTAPSYI 240
GLR+I+E++LLD+MY++P L I E T+ N P+ +
Sbjct: 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLV 408
>gi|226491966|ref|NP_001147507.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
gi|195611856|gb|ACG27758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
Length = 559
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 138/202 (68%), Gaps = 15/202 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 302 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGF- 360
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
RA +++ ++AE + + LK VE+ DLI +G+IPEFVGRFPI
Sbjct: 361 ---------RAQVRSNM-RSGGVINAEITS----SLLKSVESGDLIAYGLIPEFVGRFPI 406
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LTEPKNA+ +QY LF M+ V L F+ EAL+ IA+ A+ K TGAR
Sbjct: 407 LVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKNTGAR 466
Query: 200 GLRAIMESLLLDSMYEVPGSDI 221
GLR+I+ES+L ++MYE+P + I
Sbjct: 467 GLRSILESILTEAMYEIPETRI 488
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI I+ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 270 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 326
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 327 IQIDTKNILFIC 338
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI I+ RDV GEGVQQ +LK+
Sbjct: 269 QGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKM 305
>gi|104781014|ref|YP_607512.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
entomophila L48]
gi|95110001|emb|CAK14706.1| ATP-dependent Clp protease ATP-binding subunit [Pseudomonas
entomophila L48]
Length = 442
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 140/217 (64%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 228 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 286
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 287 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 326
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 327 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 386
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+MYE+P + + +++V++ T+
Sbjct: 387 GLRSILEGVLLDTMYEIPSQKEVSKVVIDESVIEGTS 423
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 193 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 247
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 248 PQQEFLQVDTRNILFIC 264
>gi|413936321|gb|AFW70872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
Length = 559
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 145/217 (66%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 302 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGF- 360
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
RA +++ ++AE + + LK VE+ DLI +G+IPEFVGRFPI
Sbjct: 361 ---------RAQVRSNM-RSGGVINAEITS----SLLKSVESGDLIAYGLIPEFVGRFPI 406
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LTEPKNA+ +QY LF M+ V L F+ EAL+ IA+ A+ K TGAR
Sbjct: 407 LVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKNTGAR 466
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTV 231
GLR+I+ES+L ++MYE+P G D I V + E++V
Sbjct: 467 GLRSILESILTEAMYEIPETRTGKDKIDAVVVDEESV 503
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI I+ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 270 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 326
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 327 IQIDTKNILFIC 338
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI I+ RDV GEGVQQ +LK+
Sbjct: 269 QGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKM 305
>gi|290960372|ref|YP_003491554.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
scabiei 87.22]
gi|260649898|emb|CBG73014.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
scabiei 87.22]
Length = 428
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EAVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|121534155|ref|ZP_01665980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
carboxydivorans Nor1]
gi|121307258|gb|EAX48175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
carboxydivorans Nor1]
Length = 420
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++G+D++IS R +K LGFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIISARTGKKTLGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ + K+ L+Q+ DL+ FG+IPEFVGR P+
Sbjct: 268 A--------------DIKSR--------EKKQVGEILRQILPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRIL EPKNA+++QYQ +D V L F +AL+AIA+ AL++ TGAR
Sbjct: 306 IVTLDALDEDALVRILVEPKNALVKQYQKFLELDNVQLEFKEDALRAIAQEALKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E+L+ + MYEVP +D+ +T++ VL P
Sbjct: 366 GLRAIIENLMRNVMYEVPSRTDVTKCIVTKEVVLNKEEP 404
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|289771642|ref|ZP_06531020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
lividans TK24]
gi|289701841|gb|EFD69270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
lividans TK24]
Length = 428
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F +QV DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------QIRSKREIESKDQF-EQVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QY+ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|47847699|dbj|BAD21479.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
(CLPX) [Oryza sativa Japonica Group]
Length = 554
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 311 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFQ 370
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP + ++AE + + L+ VE+ DLI +G+IPEFVGRFPI
Sbjct: 371 AP-----------IRSNMRTGGVINAEITS----SLLESVESGDLIAYGLIPEFVGRFPI 415
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LT+PKNA+ +QY LF M+ V L F+ +AL+ I++ A+ K TGAR
Sbjct: 416 LVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLISKRAIAKNTGAR 475
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTV 231
GLR+I+ESLL +SMYE+P G D I V + ED+V
Sbjct: 476 GLRSILESLLTESMYEIPEIRTGKDKIDAVVVDEDSV 512
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI I+ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 279 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 335
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 336 IQIDTKNILFIC 347
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI I+ RDV GEGVQQ +LK+
Sbjct: 278 QGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKM 314
>gi|385230673|ref|YP_005790589.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Puno135]
gi|344337111|gb|AEN19072.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Puno135]
Length = 448
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIREIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|418520578|ref|ZP_13086626.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|410703463|gb|EKQ61954.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
Length = 428
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I +R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFRKLFDMEGVELEFRPDALSAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 3 str. 686]
gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 3 str. 686]
Length = 424
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|442805908|ref|YP_007374057.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741758|gb|AGC69447.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 433
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++GL+++I RR ++ +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEKIIERRIGKRTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ES R + +L + V +DL+ +GMIPEFVGR PI
Sbjct: 268 A-AHESGTERLKEVGEL-------------------FQLVTPQDLLKYGMIPEFVGRVPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ HSL++E L+ ILT+P+NA+++QY+ LF +D V+L +AL AIA ALE+KTGAR
Sbjct: 308 IASLHSLDREALIDILTKPRNALVKQYKKLFELDGVELVIEEDALHAIADKALERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+D M+E+P ++ I + +L P+ I
Sbjct: 368 GLRAIMEEILIDVMFEIPSKKNVEKCIIDREVILSGREPTLI 409
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|340383774|ref|XP_003390391.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX
2-like [Amphimedon queenslandica]
Length = 442
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 140/223 (62%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA++GLD++I RR +++ +GF
Sbjct: 214 LLKLVEGTVASVPPQGGRKHPQQECLQVDTSNILFICGGAFDGLDKIIERRTSQRGGIGF 273
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V E D+K L +VE DL+ +G+IPEFVGR P
Sbjct: 274 GAD---------------------VKGEADSKRISEILSEVEPDDLVRYGLIPEFVGRLP 312
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+ L++E L+ ILTEPKN+++ QY+ +F M+ VD+ F EALQAIAR A+++KTGA
Sbjct: 313 VFTALEELDEEQLIAILTEPKNSLVNQYRKIFKMEGVDIEFRQEALQAIARKAVDRKTGA 372
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
RGLR+IME +LL++MY +P S + V + E TV + P I
Sbjct: 373 RGLRSIMEGILLNTMYGLPSMSRVAKVVVEESTVKGKSDPLLI 415
>gi|343517963|ref|ZP_08754959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
pittmaniae HK 85]
gi|343394814|gb|EGV07361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
pittmaniae HK 85]
Length = 415
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 147/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI N+P + + + EM Q+DT+ ILF+ GA+ GLD++I++R +N +GF
Sbjct: 211 LLKLIEGTISNIPPQGGRKHPQQEMTQLDTSKILFICGGAFAGLDKIIAKRSQNHTGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A + + + ASL++L +QVE DL+ FG+IPEF+GR P
Sbjct: 271 DAKVEKESEK--ASLSEL-------------------FRQVEPGDLMKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++ L+ ILT+PKNA+++QYQ LF ++ V+L F+ +ALQAIA AL++KTGA
Sbjct: 310 MIAPLSELDEAALISILTQPKNALVKQYQALFGLENVELEFTTDALQAIAEKALQRKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V +T++TV ++ P
Sbjct: 370 RGLRSIVEAILLDTMYDLPSIENLRKVIVTKETVTEDQKP 409
>gi|238005674|gb|ACR33872.1| unknown [Zea mays]
Length = 362
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 136/198 (68%), Gaps = 15/198 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 105 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGF- 163
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
RA +++ ++AE + + LK VE+ DLI +G+IPEFVGRFPI
Sbjct: 164 ---------RAQVRSNM-RSGGVINAEITS----SLLKSVESGDLIAYGLIPEFVGRFPI 209
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LTEPKNA+ +QY LF M+ V L F+ EAL+ IA+ A+ K TGAR
Sbjct: 210 LVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKNTGAR 269
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+ES+L ++MYE+P
Sbjct: 270 GLRSILESILTEAMYEIP 287
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI I+ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 73 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 129
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 130 IQIDTKNILFIC 141
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI I+ RDV GEGVQQ +LK+
Sbjct: 72 QGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKM 108
>gi|269125775|ref|YP_003299145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermomonospora curvata DSM 43183]
gi|268310733|gb|ACY97107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Thermomonospora curvata DSM 43183]
Length = 425
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R ++ +GFG
Sbjct: 210 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLEKIIEARIGKQGMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++++ L Q+ DL+ FGMIPEFVGR P+
Sbjct: 270 A---------------------VIRSKDEASSSSDILSQIMPEDLLKFGMIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L+++ L+ ILTEPKNA+++QY+ LF +D V+L F+P+AL+AIA A+ + TGAR
Sbjct: 309 ITNVHNLDRDALIAILTEPKNALVKQYKRLFELDGVELEFTPDALEAIADQAILRGTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP D+ V IT + VL++ P+ +
Sbjct: 369 GLRAIMEEVLLSVMYEVPSRQDVARVVITREAVLEHVNPTLV 410
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P+ +I N +I
Sbjct: 212 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFIC 246
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 213
>gi|410659271|ref|YP_006911642.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dehalobacter
sp. DCA]
gi|410662258|ref|YP_006914629.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dehalobacter
sp. CF]
gi|409021626|gb|AFV03657.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dehalobacter
sp. DCA]
gi|409024614|gb|AFV06644.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dehalobacter
sp. CF]
Length = 417
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D+LI R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFIVGGAFDGIDKLIQNRIGKKVMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ K FL+Q+ DL+ +G+IPEFVGR P+
Sbjct: 268 AEIQK----------------------KNEKNVGEFLRQILPVDLLKYGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+Q+ LV ILT+PKNA+++QY+ L MD V L F +AL+AIA A+ + TGAR
Sbjct: 306 IVTLDALDQDALVSILTQPKNALVKQYEKLLEMDGVGLEFKEDALRAIAEEAIRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME ++L+ MY++P SD+ +T+DT+L+ P I
Sbjct: 366 GLRAIMEEIMLNVMYDIPTRSDVTKCIVTKDTILQRIEPELI 407
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAERGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFI 243
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|420398083|ref|ZP_14897296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1962]
gi|393014757|gb|EJB15928.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1962]
Length = 448
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFRMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|352085687|ref|ZP_08953278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodanobacter
sp. 2APBS1]
gi|389798003|ref|ZP_10201031.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter sp.
116-2]
gi|351681628|gb|EHA64752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodanobacter
sp. 2APBS1]
gi|388445898|gb|EIM01951.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter sp.
116-2]
Length = 430
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 138/221 (62%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I +R +GF
Sbjct: 213 LLKLIEGTLASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLEKVIQQRSENTSIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E + L VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKERTENLGKVLADVEPADLVRFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +Q++ LF M++V+L F PEALQAIAR AL++KTGAR
Sbjct: 312 VATLDELDEAALVKILTEPKNAVTKQFKRLFEMEEVELEFRPEALQAIARKALKRKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR I+E +LLD+MYE+P + + + +D V++ A Y+
Sbjct: 372 GLRTILEQVLLDTMYELPSLEHVSKVVVDDAVIQGQAEPYL 412
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 178 AQSGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGTLASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTKNILFIC 249
>gi|222085565|ref|YP_002544095.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
radiobacter K84]
gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
Length = 470
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 258 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 317
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 318 AAVKGPDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 355
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 356 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR 415
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++P + + V I+E+ V + P YI
Sbjct: 416 GLRSIMEKILLDTMFDLPALEGVREVVISEEVVRGSARPLYI 457
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 202 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 259
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 260 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 294
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 225 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 261
>gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacteraceae bacterium KLH11]
gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacteraceae bacterium KLH11]
Length = 421
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ D++ K++E DL+ FG+IPEFVGR P+
Sbjct: 271 ADVRDN----------------------DDRGVGEIFKELEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT PKNA+++QYQ LF ++ +L F+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALVTILTSPKNALVKQYQRLFELEDAELAFTDDALKAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG ++ V + E+ V + P I
Sbjct: 369 GLRSILEDILLDTMFELPGMKNVTEVVVNEEAVTSESQPLII 410
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 214
>gi|402851378|ref|ZP_10899538.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodovulum sp.
PH10]
gi|402498353|gb|EJW10105.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodovulum sp.
PH10]
Length = 422
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILFV GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFVCGGAFAGLEKIISGRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V+A ED K + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AATVAAPEDRKAGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L RIL EPKNA+++QYQ LF M+ +DLT + EAL AIAR A+E+KTGAR
Sbjct: 308 VATLEDLDEAALKRILLEPKNALVKQYQRLFEMENIDLTLAEEALGAIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IMES+LLD+M+++P + + V I+ + V P YI
Sbjct: 368 GLRSIMESILLDTMFDLPSLEGVEEVVISREVVEGTARPLYI 409
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N ++
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFVC 246
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
1330]
gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis ATCC
23445]
gi|376280780|ref|YP_005154786.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
VBI22]
gi|384224774|ref|YP_005615938.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
1330]
gi|38257637|sp|Q8G0I5.1|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|189082486|sp|B0CGR0.1|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
1330]
gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
ATCC 23445]
gi|343382954|gb|AEM18446.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
1330]
gi|358258379|gb|AEU06114.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
VBI22]
Length = 424
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|398378315|ref|ZP_10536479.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. AP16]
gi|397725069|gb|EJK85525.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Rhizobium
sp. AP16]
Length = 425
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 AAVKGPDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFDLPALEGVREVVISEEVVRGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus
UQM 2246]
Length = 433
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 133/214 (62%), Gaps = 22/214 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + + +QVDT+NILF+ G + GL+ +ISRR K +GFG
Sbjct: 227 LLKMLEGTVSNVPPQGGRKHPEQQYIQVDTSNILFICGGTFVGLEDIISRRLGRKSIGFG 286
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +R SL +L L QV A DLI+FGMIPEFVGR P+
Sbjct: 287 AVDQE---QREKSLGEL-------------------LSQVTADDLIEFGMIPEFVGRLPV 324
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L P L++E ++RILTEPKNA+++QYQ LF M+ ++ F AL+ IARLA + TGAR
Sbjct: 325 LAPLDPLDEEAMLRILTEPKNALVRQYQKLFEMEGAEVEFEINALKEIARLAKARDTGAR 384
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLK 233
GLRAI+E ++LD MY++P + H+ V++
Sbjct: 385 GLRAIVEDVMLDVMYDLPEMEHKGKHVITAEVVR 418
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 171 GEDVENLLLKLLHAADFDIEAAQRGIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKM 230
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P YI N +I
Sbjct: 231 LEGTVSNVPPQGG---RKHPEQQYIQVDTSNILFIC 263
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 194 RGIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKM 230
>gi|347753001|ref|YP_004860566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
coagulans 36D1]
gi|347585519|gb|AEP01786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
coagulans 36D1]
Length = 422
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 140/222 (63%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDQIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
DL N D ++ + LK V DL+ FG+IPEF+GR P+
Sbjct: 268 T--------------DLKN---------DELDEQSLLKHVLPEDLLSFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+++QY+ + +D V+L F +AL+ IA+ A+E+KTGAR
Sbjct: 305 IATLEQLDEEALIKILTEPKNALVKQYKKMLELDHVELEFEQDALKEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+++P DI +T+++VL P +
Sbjct: 365 GLRSIIEGIMLDVMFDLPSREDIEKCIVTKESVLDKEFPRLV 406
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|385224676|ref|YP_005784601.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
83]
gi|420394578|ref|ZP_14893810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1124]
gi|332672822|gb|AEE69639.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
83]
gi|393015907|gb|EJB17070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY1124]
Length = 448
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IARLALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVCITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|329850565|ref|ZP_08265410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
biprosthecum C19]
gi|328840880|gb|EGF90451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
biprosthecum C19]
Length = 387
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 128/198 (64%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 177 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISGRGKGSSIGFG 236
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR + L+ VE DL+ FG+IPEF+GR P+
Sbjct: 237 ASVKDPEDRRTGEV----------------------LRDVEPDDLMKFGLIPEFIGRLPV 274
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LV+ILTEPKNA+I+QYQ LF M+ V L F+PEAL ++AR A+ +KTGAR
Sbjct: 275 LATLEDLDEVTLVKILTEPKNALIKQYQRLFEMENVSLNFTPEALMSVARKAIVRKTGAR 334
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E++LLD+MYE+P
Sbjct: 335 GLRSILEAILLDTMYELP 352
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 121 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSIT--RDVSGEGVQQALL 178
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 179 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 213
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 144 RGIVYIDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 180
>gi|81428671|ref|YP_395671.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
sakei subsp. sakei 23K]
gi|78610313|emb|CAI55362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
sakei subsp. sakei 23K]
Length = 417
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + E++Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 211 LLKILEGTIASVPPQGGRKHPQQELIQIDTTNILFIIGGAFDGIETIVKNRLGEKTIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + ++ NQS ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 271 SKAGQAVDE---------NQS--------------LMQQIVTEDLMQFGIIPEFIGRIPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L ++ LVRILTEPKNA+++QY L +D V+L F+PEAL AIA LA+E+ TGAR
Sbjct: 308 TAALEKLTEDDLVRILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHLAIERNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E +++D M++VP D++ V +T++ V P
Sbjct: 368 GLRSIIEEVMMDMMFDVPSREDVVKVLVTKEAVDGTAKP 406
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKLLQNADFDVDRAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 215 LEGTIASVPPQGG---RKHPQQELIQIDTTNILFI 246
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 214
>gi|430750769|ref|YP_007213677.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermobacillus composti KWC4]
gi|430734734|gb|AGA58679.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Thermobacillus composti KWC4]
Length = 418
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 27/222 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++GL+++I RR +K +GF
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEQIIKRRIGKKVIGFT 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKD--AFLKQVEARDLIDFGMIPEFVGRF 137
A E+ KE +LK V+ DL+ FG+IPEFVGR
Sbjct: 268 AGG------------------------ENMKEMKPGEYLKLVQPEDLLKFGLIPEFVGRL 303
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ L+++ L+RILTEPKNA+++QYQ L MD V L F P AL+AIA+ A+++ TG
Sbjct: 304 PVISALEPLDEQALIRILTEPKNALVKQYQKLLEMDNVKLDFEPAALEAIAKEAIKRNTG 363
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
ARGLRAI+E ++LD MYEVP DI ITE V + P
Sbjct: 364 ARGLRAIIEDIMLDVMYEVPSRDDISSCMITEQVVREKIMPE 405
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAERGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|147866723|emb|CAN80513.1| hypothetical protein VITISV_026067 [Vitis vinifera]
Length = 469
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 144/217 (66%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVP+K + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 213 LLKMLEGTIVNVPDKGGRKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L D A V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 273 APV--RANMRTGGLTD-----AVVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 317
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +QY+ + +M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 318 LVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTENALRLIAKKAIAKNTGAR 377
Query: 200 GLRAIMESLLLDSMYEVP----GSDIL-MVHITEDTV 231
LRAI+E +L ++M+E+P G+D++ V + E+ V
Sbjct: 378 SLRAILEKILTEAMFEIPDVKTGTDMVDAVLVDEEAV 414
>gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
EE-36]
gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
NAS-14.1]
gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
NAS-14.1]
gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
EE-36]
Length = 421
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ +Q A E +E DL+ FG+IPEFVGR P+
Sbjct: 270 A--------------DVRDQDARGIGE--------IFTDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILTEPKNA+++QYQ LF ++ LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 308 LATLEDLDEDALVTILTEPKNALVKQYQRLFEIEDTQLTFTDDALLAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LL++M+++PG D + V + E+ V + AP I
Sbjct: 368 GLRSILEDILLNTMFDLPGMDSVTEVVVNEEAVTSDAAPLMIHA 411
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|433456159|ref|ZP_20414216.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
crystallopoietes BAB-32]
gi|432196669|gb|ELK53107.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
crystallopoietes BAB-32]
Length = 430
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTN+LF+ +GA+ GL+ +I R K +GFG
Sbjct: 220 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEEIIGSRAGRKGIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP +++ +K+KDA+ +V DL+ FG+IPEF+GR P+
Sbjct: 280 APLSDA-----------------------SKDKDAY-GEVMPEDLLKFGLIPEFIGRLPV 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++ L+RILTEPKNA+I+QYQ +F +D V+L+F +AL A+A LALE+ TGAR
Sbjct: 316 ITTVSNLDRPALIRILTEPKNALIKQYQKMFHLDGVELSFEQDALDAVADLALERGTGAR 375
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LL M+++P D+ V IT D V P+ I
Sbjct: 376 GLRAIIEEALLPVMFDLPSRDDVAAVVITADVVTSKAEPTLI 417
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 164 GEDVENILLKLIQAADYDVKKAEQGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 221
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 222 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNVLFI 255
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 187 QGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKI 223
>gi|325186763|emb|CCA21310.1| ATPdependent Clp protease ATPbinding subunit clpX putative [Albugo
laibachii Nc14]
Length = 556
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 24/248 (9%)
Query: 3 AVTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNG 62
A T +A DV LL MLEG +VN+PEK + R + V +DT+NILF+ GA+ G
Sbjct: 315 ATTNIARDVSGEGVQQALLKMLEGNLVNIPEKGGRKNPRDDCVTIDTSNILFICGGAFAG 374
Query: 63 LDRLISRRKNEKYLGFGA--PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVE 120
L++ I+ R +GFGA P+T DL Q KE A ++ VE
Sbjct: 375 LEKTIAARTCRSSIGFGAIMPNT-----------DLHMQ----------KEAAACMENVE 413
Query: 121 ARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFS 180
DLI FG+IPEF+GR P++V L ++ +VRIL+EPKN++++Q++ LF + V+ +
Sbjct: 414 PEDLIAFGLIPEFIGRLPVIVSTRGLQKQEMVRILSEPKNSIVRQFKALFALQGVEFVVT 473
Query: 181 PEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
AL+A+A +ALEK TGARGLR+I+E L+D M+++P + VH+ T+L AP+
Sbjct: 474 KGALEAVAEIALEKNTGARGLRSILERTLVDVMFDLPDLPSVRAVHVDTGTILSRKAPTL 533
Query: 240 IRGIVFLD 247
+R V D
Sbjct: 534 VRDDVKED 541
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 299 RGIVYIDEIDKISRKNATTNIARDVSGEGVQQALLKM 335
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 283 GIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 300 GIVYIDEIDKISRKNATTNIARDVSGEGVQQALLKM 335
>gi|389819479|ref|ZP_10209347.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
antarcticus DSM 14505]
gi|388463277|gb|EIM05641.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
antarcticus DSM 14505]
Length = 423
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 26/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++G+D++I RR K +GFG
Sbjct: 208 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGVDQIIKRRLGNKIIGFG 267
Query: 80 A-PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A P+ E ++ L Q+ DL+ FG+IPEF+GR P
Sbjct: 268 ADPNKEELDEKS------------------------LLSQLIPEDLLKFGLIPEFIGRLP 303
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L L+++ LV ILTEPKNA+I+QYQ + +D V LTF PEAL IA+LA+E+KTGA
Sbjct: 304 VLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFEPEALVEIAKLAIERKTGA 363
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
RGLR+I+E+ +L+ M+++P DI+ IT++TV + P +
Sbjct: 364 RGLRSIIENTMLEVMFDLPSREDIVECIITKETVADSVQPKLM 406
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLIQAADYDVDRAEKGIIYIDEIDKVARKSENASITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P G ++P+ +I N +I
Sbjct: 212 LEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 243
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENASITRDVSGEGVQQALLKI 211
>gi|354593925|ref|ZP_09011968.1| clp protease ATP-binding subunit ClpX [Commensalibacter intestini
A911]
gi|353673036|gb|EHD14732.1| clp protease ATP-binding subunit ClpX [Commensalibacter intestini
A911]
Length = 419
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTN+LF+ GA+ GLD++IS R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLDKIISARSVGYGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A QSA D+ A +Q+E+ DL+ FG+IPEF+GR P+
Sbjct: 269 AEV----------------QSA------DDHNIGALFRQLESEDLMKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+QE LV+IL EPKNA+++QYQ LF M+ V LTF EA++ IA A+E++TGAR
Sbjct: 307 IATLDDLDQEALVQILKEPKNALVKQYQKLFEMENVQLTFEDEAVEEIANKAIERRTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL +M+E+P +D+ V + +D + + P Y+
Sbjct: 367 GLRSILETILLSTMFELPDLNDVSEVIVNKDVINRKAEPVYV 408
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQAADYNVERAQRGIIYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNMLFIC 245
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|317508502|ref|ZP_07966169.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
gi|316253193|gb|EFV12596.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
Length = 426
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ +GA+ GL+++I R + LGFG
Sbjct: 213 LLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIGERVGRRGLGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED + +D F +V DLI FG+IPEF+GR P+
Sbjct: 273 A---------------------QIRTREDVETRDYF-AEVMPEDLIKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV ILTEPKNA+++QYQ LF MD V+L F+ EA++A+A AL + TGAR
Sbjct: 311 IASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFNKEAVEAVADQALLRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MY++P D+ V ITE+TV +N P+ +
Sbjct: 371 GLRAIMEEVLLPVMYDIPSRDDVAKVVITEETVRENVLPTIV 412
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTQASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 216
>gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus
cellulolyticus 11B]
gi|166214751|sp|A0LSV2.1|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus
cellulolyticus 11B]
Length = 427
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTNILF+ GA+ GL+++I R +K +GF
Sbjct: 212 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFAGLEKIIEARIGKKGIGFT 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A G+R + AD+ V DL+ +GMIPEFVGR P+
Sbjct: 272 ATL---HGKRDLNTADI-------------------FSHVMPEDLLKYGMIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++E L+RILTEPKNA+++QYQ LF +D VDL F+ +AL+AIA A+ + TGAR
Sbjct: 310 ITTVTSLDREALIRILTEPKNALVRQYQRLFELDSVDLEFTDDALEAIADQAILRGTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MY++P +D+ V IT D VL N P+ +
Sbjct: 370 GLRAIMEEVLLSVMYDIPSRTDVARVVITRDVVLNNVNPTLV 411
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENILLKLIQAADYDVKRAETGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 214 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNILFI 247
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 GIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 215
>gi|262374980|ref|ZP_06068214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
lwoffii SH145]
gi|262309993|gb|EEY91122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
lwoffii SH145]
Length = 436
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVRKKDETKKLSDLFRQVEATDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ A+E+ TGAR
Sbjct: 310 IATLDELDEEALMQILTEPKNALTRQYQHLFDMEDVDLVFEESALRAVAKKAVERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E+ LL++MY++P SD+ V I E + P Y
Sbjct: 370 GLRSILENSLLETMYDLPSRSDVGTVVINEAVIKGEAEPEY 410
>gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 428
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 29/225 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL++LI R ++ +GF
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLEKLIESRTGQQGMGFN 272
Query: 80 A---PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGR 136
A P E G A +V DL+ FGMIPEFVGR
Sbjct: 273 AVLRPKGELGG-------------------------SALFGEVMPEDLLKFGMIPEFVGR 307
Query: 137 FPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT 196
P++ H L++E L+RILTEP+NA+++QYQ LF +D V+L F+P+AL AIA + + T
Sbjct: 308 LPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAEQGIIRGT 367
Query: 197 GARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GARGLRAI+E +LL MYEVP D+ V IT +TV+ N P+ +
Sbjct: 368 GARGLRAIIEEVLLSVMYEVPSREDVGQVIITRETVIDNVNPTIV 412
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDK+ P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKKAETGIIYIDEVDKVARKSENPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFIC 249
>gi|389576430|ref|ZP_10166458.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Eubacterium
cellulosolvens 6]
gi|389311915|gb|EIM56848.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Eubacterium
cellulosolvens 6]
Length = 432
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDT+NILF+ GA+ GL+R+I RK+ K LGF
Sbjct: 208 LLKIVEGTVSNVPPQGGRKHPHQEFIQVDTSNILFICGGAFEGLERIIESRKDTKSLGFE 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A DL N + L++V DL+ FG+IPEFVGR P+
Sbjct: 268 A--------------DLGIHK--------NTDIGEVLREVMPEDLVKFGLIPEFVGRVPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LV IL EPKN++++QYQ LF +D V+L F +AL+A+A A+ +KTGAR
Sbjct: 306 VVTLDGLDEDALVSILKEPKNSLVKQYQKLFEIDGVELKFEDDALRAMAAEAVRRKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLRAIMES ++D MYE P D I+ IT+D V P+ + G
Sbjct: 366 GLRAIMESTMMDVMYETPSDDTIIECDITKDAVDGTGKPTLVHG 409
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVERAEHGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KIVEGTVSNVPPQGG---RKHPHQEFIQVDTSNILFIC 244
>gi|415884180|ref|ZP_11546209.1| ATP-dependent Clp protease [Bacillus methanolicus MGA3]
gi|387591975|gb|EIJ84292.1| ATP-dependent Clp protease [Bacillus methanolicus MGA3]
Length = 421
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++ +I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGQKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E D+K+ L +V DL+ FG+IPEFVGR P+
Sbjct: 268 GDSK--------------------IPEVDDKD---LLSKVLPEDLLKFGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ + +D V+L F ALQ IA+ A+E+KTGAR
Sbjct: 305 IASLEQLDEDALVEILTKPKNALVKQYQKMLELDGVELEFEDAALQEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+E+P DI IT++TV N+AP I
Sbjct: 365 GLRSIIEGIMLDVMFELPSRDDITKCIITKETVANNSAPKLI 406
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 424
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 29/225 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL++LI R ++ +GF
Sbjct: 211 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLEKLIESRTGQQGMGFN 270
Query: 80 A---PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGR 136
A P E G A +V DL+ FGMIPEFVGR
Sbjct: 271 AVLRPKGELGG-------------------------SALFGEVMPEDLLKFGMIPEFVGR 305
Query: 137 FPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT 196
P++ H L++E L+RILTEP+NA+++QYQ LF +D V+L F+P+AL AIA + + T
Sbjct: 306 LPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAEQGIIRGT 365
Query: 197 GARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GARGLRAI+E +LL MYEVP D+ V IT +TV+ N P+ +
Sbjct: 366 GARGLRAIIEEVLLSVMYEVPSREDVGQVIITRETVIDNVNPTIV 410
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDK+ P I RDV GEGVQQ +L
Sbjct: 155 GEDVENILLKLIQAADYDVKKAETGIIYIDEVDKVARKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P+ +I N +I
Sbjct: 213 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFIC 247
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDK+ P I RDV GEGVQQ +LK+
Sbjct: 179 GIIYIDEVDKVARKSENPSIT--RDVSGEGVQQALLKI 214
>gi|395495007|ref|ZP_10426586.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
PAMC 25886]
gi|395794595|ref|ZP_10473916.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
Ag1]
gi|421137892|ref|ZP_15597968.1| ATP-dependent protease ATP-binding subunit [Pseudomonas fluorescens
BBc6R8]
gi|395341260|gb|EJF73080.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
Ag1]
gi|404510951|gb|EKA24845.1| ATP-dependent protease ATP-binding subunit [Pseudomonas fluorescens
BBc6R8]
Length = 427
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|389806652|ref|ZP_10203699.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
thiooxydans LCS2]
gi|388445304|gb|EIM01384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
thiooxydans LCS2]
Length = 430
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 138/221 (62%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I +R +GF
Sbjct: 213 LLKLIEGTLASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLEKVIQQRSENTSIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E + L VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKERTENLGKVLADVEPADLVRFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +Q++ LF M++V+L F PEALQAIAR AL++KTGAR
Sbjct: 312 VATLDELDEAALVKILTEPKNAVTKQFKRLFEMEEVELEFRPEALQAIARKALKRKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR I+E +LLD+MYE+P + + + +D V++ A Y+
Sbjct: 372 GLRTILEQVLLDTMYELPSLEHVSKVVVDDAVIEGQAEPYL 412
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 178 AQSGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGTLASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTKNILFIC 249
>gi|392949120|ref|ZP_10314715.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
pentosus KCA1]
gi|392435709|gb|EIW13638.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
pentosus KCA1]
Length = 422
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ RR +K +GFG
Sbjct: 214 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEDIVKRRLGDKTIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
T++ GR A +D+K + ++QV DL+ FG+IPEF+GR PI
Sbjct: 274 ---TDTDGRNAVL--------------DDSK---SLMQQVVPEDLLQFGLIPEFIGRLPI 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LVRILTEPKNA+++QYQ L +D +L F+ +AL+AIA+ AL + TGAR
Sbjct: 314 LTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAIAQEALARNTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E + D MY++P D+ V IT +TV + P +
Sbjct: 374 GLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADHAEPELV 415
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 158 GEDVENILLKLLQNADYDVERAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 217
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 218 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 249
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 217
>gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Faecalibacterium prausnitzii A2-165]
gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Faecalibacterium prausnitzii A2-165]
Length = 439
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 136/215 (63%), Gaps = 27/215 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTNILF+ GA++GLD+ I RR + LGFG
Sbjct: 226 LLKILEGTVSNVPPNGGRKHPQQEFIQIDTTNILFICGGAFDGLDKYILRRTDRSALGFG 285
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKE--KDAFLKQVEARDLIDFGMIPEFVGRF 137
S+ +DN E + A L++VE D++ FG+IPE +GR
Sbjct: 286 ------------------------SSLKDNSEDAQRALLRKVEPHDMVKFGLIPELIGRL 321
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ L+++ LVR+L EP+N++++QY+ L +MD V+L F+ EAL AIAR +E+KTG
Sbjct: 322 PVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDSVELEFTDEALHAIARKTIERKTG 381
Query: 198 ARGLRAIMESLLLDSMYEVPGS-DILMVHITEDTV 231
ARGLR++ME +LL MY+VP I+ V I +DTV
Sbjct: 382 ARGLRSVMEGILLPVMYDVPNDPTIIRVTIDKDTV 416
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDVGGEGVQQ +L
Sbjct: 170 GEDVENILLKLLQAADFDVQKAQVGIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALL 227
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + PN G ++P +I N +I
Sbjct: 228 KILEGTVSNVPPNGG---RKHPQQEFIQIDTTNILFIC 262
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDVGGEGVQQ +LK+
Sbjct: 194 GIIYIDEIDKITRKSENPSI--TRDVGGEGVQQALLKI 229
>gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
intermedium LMG 3301]
gi|444308444|ref|ZP_21144089.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
intermedium M86]
gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
intermedium LMG 3301]
gi|443488027|gb|ELT50784.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
intermedium M86]
Length = 424
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR D F +++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIG---------------------DVF-RELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L+F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELSFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVQEVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|302534404|ref|ZP_07286746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. C]
gi|302443299|gb|EFL15115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. C]
Length = 428
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 141/230 (61%), Gaps = 23/230 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKREIEASDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
GLRAIME +L+ MYEVP D+ V IT D V N P+ + IV D+
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNVNPTLVPRIVPKDQ 421
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|429199360|ref|ZP_19191117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
ipomoeae 91-03]
gi|428664937|gb|EKX64203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
ipomoeae 91-03]
Length = 428
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|339635044|ref|YP_004726685.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella
koreensis KACC 15510]
gi|338854840|gb|AEJ24006.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella
koreensis KACC 15510]
Length = 413
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGTI NVP + + E +Q+DTTNILF+ GA+ G++ ++ R K +GFG
Sbjct: 212 LLKMIEGTIANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIENIVKERLGAKTIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E+ + S+ ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 272 TDSDEAHEQADKSI----------------------MQQILPEDLMTFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LV ILT+PKNA+ +QY+ L +D V L F PEAL+A+A LA+E++TGAR
Sbjct: 310 LTALEQLTEDDLVLILTKPKNALTKQYEALLALDGVQLEFEPEALKAMAHLAIERETGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+E+P D+ V I+++ V K+T P+ +
Sbjct: 370 GLRSIIEEVMLDVMFEIPSRDDVNKVVISKENVEKHTEPTVV 411
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 156 GEDVENILLKLIQSADFDIERAEHGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKM 215
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 216 IEGTIANVPPQGG---RKHPNQEFIQIDTTNILFI 247
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 179 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKM 215
>gi|384921303|ref|ZP_10021288.1| ATP-dependent protease ATP-binding subunit ClpX [Citreicella sp.
357]
gi|384464818|gb|EIE49378.1| ATP-dependent protease ATP-binding subunit ClpX [Citreicella sp.
357]
Length = 421
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R + +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVRDPDERGVGEI----------------------FGDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILT+PKNA+++QYQ LF M+ L+F+ +AL AIA+ A+E+KTGAR
Sbjct: 308 IATLEDLDEEALVTILTKPKNALVKQYQRLFEMEDTKLSFTDDALSAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+M+E+PG D+ V + E+ V P I
Sbjct: 368 GLRSILEAILLDTMFELPGMDDVTEVVVNEEAVTSEAKPLMI 409
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|386840197|ref|YP_006245255.1| ATP-dependent protease ATP-binding subunit [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374100498|gb|AEY89382.1| ATP-dependent protease ATP-binding subunit [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451793491|gb|AGF63540.1| ATP-dependent protease ATP-binding subunit [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 428
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEARAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TILSKRELEAKDVF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 5 str. 513]
gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 5 str. 513]
Length = 424
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D + + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVMDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|297739450|emb|CBI29632.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 144/217 (66%), Gaps = 20/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVP+K + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 289 LLKMLEGTIVNVPDKGGRKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFG 348
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L D A V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 349 APV--RANMRTGGLTD-----AVVTS--------SLLESVESGDLIAYGLIPEFIGRFPI 393
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +LN++ LV++LTEPKNA+ +QY+ + +M+ V L F+ AL+ IA+ A+ K TGAR
Sbjct: 394 LVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTENALRLIAKKAIAKNTGAR 453
Query: 200 GLRAIMESLLLDSMYEVP----GSDIL-MVHITEDTV 231
LRAI+E +L ++M+E+P G+D++ V + E+ V
Sbjct: 454 SLRAILEKILTEAMFEIPDVKTGTDMVDAVLVDEEAV 490
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED--TVLKNTAPSYIRGIV 244
I +L+K++GA +A +++ DS+ E+ S++L++ T T+L T + +
Sbjct: 160 IHHASLQKESGAESTKAEIDNDDNDSV-ELEKSNVLLLGPTGSGKTLLAKTLARVV-NVP 217
Query: 245 FLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAV 296
F+ I + Q VG E V+ + K+ +A F GIV++DEVDKI
Sbjct: 218 FV-----IADATTLTQASYVG-EDVESILHKLLMVAEFNVEAAQQGIVYIDEVDKITKKA 271
Query: 297 PGIHQLRDVGGEGVQQGMLKV 317
++ RDV GEGVQQ +LK+
Sbjct: 272 ESLNTGRDVSGEGVQQALLKM 292
>gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
hathewayi DSM 13479]
gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
hathewayi DSM 13479]
Length = 433
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL+++I R + +GF
Sbjct: 210 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIIESRLSAGSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + D LK+V +DL+ FG+IPEF+GR P+
Sbjct: 270 AEIVD----------------------KNRTDIDDLLKKVLPQDLVKFGLIPEFIGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E LV+ILTEPKNA+I+QYQ LF +D V L + EA++ IA LA+E+KTGAR
Sbjct: 308 TVSLELLDKEALVKILTEPKNALIKQYQKLFELDDVKLELTEEAVERIAELAVERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES+++D MYE+P S+I + IT+ V K P I
Sbjct: 368 GLRSIMESVMMDIMYEIPSDSNIGICTITKAVVNKEGEPEII 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLIQAADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 246
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|421769008|ref|ZP_16205717.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus LRHMDP2]
gi|421771271|ref|ZP_16207931.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus LRHMDP3]
gi|411185404|gb|EKS52532.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus LRHMDP2]
gi|411185857|gb|EKS52983.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
rhamnosus LRHMDP3]
Length = 416
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIENIVKNRIGEKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
D NQ + D + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 270 T--------------DFTNQ-----VDPDK----SLMQQIIPEDLMQFGIIPEFIGRIPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L LN+ LVRILTEPKNA+++QYQ L ++D DL F+P AL+AIA A+ + TGAR
Sbjct: 307 LAALEKLNESDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQAIVRDTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME+++ D+M+++P SD+ V +T+ V P +
Sbjct: 367 GLRSIMEAIMQDTMFDLPSRSDVDKVVVTKSAVEGKAKPQLV 408
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADYDVERAEKGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
>gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
E-37]
gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
E-37]
Length = 421
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 131/201 (65%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ D++ + +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVRDN----------------------DDRGVGEIFRDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ LF M+ DLTF+ +AL AIA+ A+++KTGAR
Sbjct: 308 VATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTDLTFTDDALSAIAKKAIQRKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLR+I+E +LLD+M+E+PG D
Sbjct: 368 GLRSILEGILLDTMFELPGMD 388
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|444375274|ref|ZP_21174570.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori A45]
gi|443620211|gb|ELT80661.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori A45]
Length = 448
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGTEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|399516027|ref|ZP_10757651.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leuconostoc
pseudomesenteroides 4882]
gi|398649121|emb|CCJ65678.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leuconostoc
pseudomesenteroides 4882]
Length = 415
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 22/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI +VP + + + E++QVDTTNILF+ GA+ G+D +I R E+ +GFG
Sbjct: 210 LLKMLEGTIASVPPQGGRKHPQQELIQVDTTNILFIVGGAFAGIDTIIKERLGERVIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E+A V+ ++N L+ V+ D+ FG+IPEF+GR PI
Sbjct: 270 SDANENA----------------VALNDEN-----ILRHVQPEDMTKFGLIPEFIGRLPI 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L L RILTEPKNA+I+QY L +D V+L F P+AL+A+A+LA+++ TGAR
Sbjct: 309 VTVLDELKVADLARILTEPKNALIKQYTTLLGLDDVELEFQPDALEAMAKLAIKRHTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLR+I+E+++ D MY++P D+ V ITE +V K P
Sbjct: 369 GLRSIIENVMKDVMYDIPSRDDVAKVIITEASVEKGEQPE 408
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENIILKLLQAADFNVEAAEHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKM 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 214 LEGTIASVPPQGG---RKHPQQELIQVDTTNILFI 245
>gi|452820736|gb|EME27775.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Galdieria
sulphuraria]
Length = 533
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 135/209 (64%), Gaps = 24/209 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + RGE +Q+DT NILF+ GA+ GL+++++ R +GFG
Sbjct: 313 LLKMLEGTVVNVPEKGGRKNPRGEFIQIDTKNILFMCGGAFAGLEKIVADRLAAASIGFG 372
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA-FLKQVEARDLIDFGMIPEFVGRFP 138
A + ++ N++ DA L VE+ D I +G+IPEFVGR P
Sbjct: 373 A----------------------MVRQQSNRDLDASILDYVESTDFIKYGLIPEFVGRLP 410
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
I + HSL + LV ILT+PKNA+++Q+Q L+ M+ V+L S AL+ +A A+EKKTGA
Sbjct: 411 ITLGVHSLTMDQLVSILTQPKNALVKQFQELYAMNGVELHMSEGALRLVAHEAIEKKTGA 470
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHI 226
RGLRAI+E LLLDSM+++P D+ V++
Sbjct: 471 RGLRAILERLLLDSMFDLPDLEDVSAVYV 499
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 279 LAAFGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
LA GIV++DE+DK + RDV GEGVQQ +LK+
Sbjct: 277 LAQKGIVYIDEIDKCSKKSENVSITRDVSGEGVQQALLKM 316
>gi|338533214|ref|YP_004666548.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus fulvus
HW-1]
gi|337259310|gb|AEI65470.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus fulvus
HW-1]
Length = 427
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 134/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GLD++I RR + LGFG
Sbjct: 212 LLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRLGGRSLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ SL +L LK VE DL+ FGMIPEF+GR PI
Sbjct: 272 A---EVQSKKQRSLTEL-------------------LKHVEPEDLLKFGMIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ IL +PKNA+ +QY+ LF +D V L F+ AL+AIA A+ +K GAR
Sbjct: 310 ITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKAGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
GLR+I+ES +LD MYE+P V I+E+ +LK + P
Sbjct: 370 GLRSILESAMLDVMYEIPSRKTAREVLISEEVILKKSEP 408
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKL 215
>gi|306836716|ref|ZP_07469679.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
accolens ATCC 49726]
gi|304567394|gb|EFM42996.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
accolens ATCC 49726]
Length = 431
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 134/221 (60%), Gaps = 23/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DT+NILF+ +GA+ GLD++I+ R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDQVIADRVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ED +EK QV DL+ FG+IPEF+GR P+
Sbjct: 283 AKL----------------------GTEDEREKVDLFSQVRPEDLVKFGLIPEFIGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++LTEPKN++++QY LF MD +L AL AIA LALE+KTGAR
Sbjct: 321 VATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLRAI+E LL+ M+E+P DI VHIT + V + P +
Sbjct: 381 GLRAILEELLVPVMFELPDREDISAVHITAECVTQGAEPDF 421
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 167 GEDVENILLKLLQAADFDVERAQRGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALL 224
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 225 KILEGTVAAIPPQGG---RKHPNQEFIQLDTSNILFI 258
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 190 RGIIYVDEVDKISRKSENPSIT--RDVSGEGVQQALLKI 226
>gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
HEL-45]
gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
HEL-45]
Length = 422
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ R + +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVRDNDARGIGEI----------------------FTDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILTEPKNA+++QYQ LF ++ LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 308 LATLEDLDEDALVTILTEPKNALVKQYQRLFELEDTQLTFTDDALTAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG D + V + E+ V+ P I
Sbjct: 368 GLRSILEDILLDTMFELPGLDTVTEVVVNEEAVMSEAKPLMI 409
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|451982760|ref|ZP_21931062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 18A]
gi|451759537|emb|CCQ83585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 18A]
Length = 426
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+R+I R +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E K+ K+VE DL+ FG+IPEFVGR P+
Sbjct: 271 --------------------NAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+AR ALE+KTGAR
Sbjct: 311 IATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQQDVSKVAIDESVIDGSSQPLMI 412
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|15612353|ref|NP_224006.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori J99]
gi|8134369|sp|Q9ZJL8.1|CLPX_HELPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|4155892|gb|AAD06862.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSEHRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSEHRSITRDVSGEGVQQALLKI 250
>gi|294629344|ref|ZP_06707904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. e14]
gi|292832677|gb|EFF91026.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. e14]
Length = 428
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELEAKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V +T D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVVTADVVHSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|296134053|ref|YP_003641300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermincola
potens JR]
gi|296032631|gb|ADG83399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola
potens JR]
Length = 419
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R +K LGFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIQNRIGKKTLGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ ++ D+ LK + DL+ FG+IPEFVGR P+
Sbjct: 268 A---EIKSQKEKNVGDI-------------------LKHILPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ LVRILTEP+NA+I+QYQ LF +D + L F+ +AL+ IA+ A+++ TGAR
Sbjct: 306 IVTLEALDENALVRILTEPRNALIKQYQKLFELDNIALEFTDDALRTIAQEAMKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++L+ MY++P DI IT++ VLK P
Sbjct: 366 GLRAIIEDIMLEVMYDIPSRDDIAKCTITKEVVLKKEPP 404
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|407798619|ref|ZP_11145526.1| ClpX [Oceaniovalibus guishaninsula JLT2003]
gi|407059580|gb|EKE45509.1| ClpX [Oceaniovalibus guishaninsula JLT2003]
Length = 420
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 130/199 (65%), Gaps = 22/199 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILFV GA+ GLDR+I++R +GFG
Sbjct: 208 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFVCGGAFAGLDRIIAQRGKGSSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A D K F K++E DL+ FG+IPEFVGR P+
Sbjct: 268 A---------------------EVKAP-DEKSIGDFFKELEPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ LF ++ LTF+ +AL AIA+ A+++KTGAR
Sbjct: 306 IATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTKLTFTEDALTAIAKRAIQRKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG 218
GLR+IME +LLD+M+E+PG
Sbjct: 366 GLRSIMEDILLDTMFELPG 384
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N ++
Sbjct: 210 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFVC 244
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 211
>gi|386815715|ref|ZP_10102933.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiothrix
nivea DSM 5205]
gi|386420291|gb|EIJ34126.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiothrix
nivea DSM 5205]
Length = 426
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDT NILF+ GA+ G+DR+I RR + +GF
Sbjct: 213 LLKLIEGTIASVPPQGGRKHPQQEFLQVDTRNILFIVGGAFAGMDRVIRRRTEKGSIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V A ++++ ++ +EA DL+ +G+IPEFVGR P+
Sbjct: 272 --------------------SAKVKAPDESRSFGEVIRDIEAEDLVHYGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILTEP+NA+ +QY LF M+ +L F +AL AIAR A+E+KTGAR
Sbjct: 312 VATLEELDEEALVQILTEPRNALTKQYAKLFDMEGAELVFRDDALHAIARKAMERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+MY++P + + +++V+K + Y+
Sbjct: 372 GLRSIMEKILLDTMYDLPSEQNVGKVVVDESVVKGESTPYL 412
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQTGIVYIDEIDKISRKADNPSI--TRDVSGEGVQQALLKLIEGTIASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYI 352
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFI 248
>gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
1NLS2]
gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
1NLS2]
Length = 424
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 149/235 (63%), Gaps = 27/235 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISSRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AASVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +IL EPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIG 253
GLR+I+ES+LL++M+++PG + + V I+ + V P YI + D D+ G
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI----YADRTDRAG 418
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|420161039|ref|ZP_14667810.1| ATP-dependent protease ATP-binding subunit [Weissella koreensis
KCTC 3621]
gi|394745789|gb|EJF34607.1| ATP-dependent protease ATP-binding subunit [Weissella koreensis
KCTC 3621]
Length = 413
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGTI NVP + + E +Q+DTTNILF+ GA+ G++ ++ R K +GFG
Sbjct: 212 LLKMIEGTIANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIENIVKERLGAKTIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E+ + S+ ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 272 TDSDEAHEQADKSI----------------------MQQILPEDLMTFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LV ILT+PKNA+ +QY+ L +D V L F PEAL+A+A LA+E++TGAR
Sbjct: 310 LTALEQLTEDDLVLILTKPKNALTKQYEALLALDGVQLEFEPEALKAMAHLAIERETGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+E+P D+ V I+++ V K+T P+ +
Sbjct: 370 GLRSIIEEVMLDVMFEIPSRDDVNKVVISKENVEKHTEPTVV 411
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 156 GEDVENILLKLIQSADFDIERAEHGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKM 215
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 216 IEGTIANVPPQGG---RKHPNQEFIQIDTTNILFI 247
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 179 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKM 215
>gi|408531879|emb|CCK30053.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptomyces
davawensis JCM 4913]
Length = 429
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELEAKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP +D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRNDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|329121862|ref|ZP_08250477.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
micraerophilus DSM 19965]
gi|327467800|gb|EGF13292.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
micraerophilus DSM 19965]
Length = 411
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + EM+Q+DT+ ILF+ GA+ G+D+++++R + +GFG
Sbjct: 210 LLKILEGTVANVPPQGGRKHPNQEMIQLDTSKILFICGGAFAGMDKVVAKRLTKSAVGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + A + L VE DL+ FG+IPEF+GR PI
Sbjct: 270 ADIKKKEEKDVAKI----------------------LNMVEPEDLLKFGLIPEFIGRLPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ LVRILT+PKNA+I+QY+ L MD V+L F +A++AIA+ A+E+ TGAR
Sbjct: 308 LVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAKKAIERNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++ MY++P D+ ITED V+ N P R
Sbjct: 368 GLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVHNKQPELKR 410
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENILLRLIQAADYDLEKAERGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN I +I
Sbjct: 212 KILEGTVANVPPQGG---RKHPNQEMIQLDTSKILFIC 246
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 213
>gi|406999543|gb|EKE17146.1| hypothetical protein ACD_10C00602G0003 [uncultured bacterium]
Length = 420
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 134/222 (60%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + VQVDTTNILF+ GA+ GL+++I R + +GFG
Sbjct: 209 LLKLIEGTVASIPPQGGRKHPNQDFVQVDTTNILFICGGAFAGLEKIIQNRSEKGGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++ED K L E DLI FG+IPE +GR P+
Sbjct: 269 A---------------------EVKSKEDKKAIGQILLDAEPEDLIKFGLIPELIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L + L++ILTEPKNA+I+QYQ LF+M+ V+L P AL AIA+ AL +KTGAR
Sbjct: 308 VATLQELEEPALIQILTEPKNALIKQYQKLFSMEDVELEIRPSALSAIAKKALNRKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLD+MYE+PG ++ V I E+ + +T P I
Sbjct: 368 GLRSILEHALLDTMYELPGMENVSKVVIDENMITNDTPPLLI 409
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 174 AQQGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASIPPQGG---RKH 228
Query: 337 PNTGYIWYRYPNTGYIW 353
PN ++ N +I
Sbjct: 229 PNQDFVQVDTTNILFIC 245
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 QGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 212
>gi|429216066|ref|ZP_19207225.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
M1]
gi|428153719|gb|EKX00273.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
M1]
Length = 426
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I R + +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQNRSTKGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E K+ L++VE DL+ FG+IPEFVGR PI
Sbjct: 271 --------------------SAEVRSQEMGKKVGEALREVEPEDLVKFGLIPEFVGRLPI 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+AR ALE+KTGAR
Sbjct: 311 IATLDELDEAALMQILTEPKNALTKQYARLFEMEGVDLEFRPDALKAVARRALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P +++ V I E + ++ P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQTEVSKVVIDESVIDGSSQPLLI 412
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|420464622|ref|ZP_14963389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-6]
gi|393082109|gb|EJB82825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-6]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420494954|ref|ZP_14993519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-23]
gi|393113087|gb|EJC13606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-23]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|293376038|ref|ZP_06622291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
sanguinis PC909]
gi|325844603|ref|ZP_08168246.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
sp. HGF1]
gi|292645339|gb|EFF63396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
sanguinis PC909]
gi|325489028|gb|EGC91415.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
sp. HGF1]
Length = 408
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEG++ NVP + + E +Q+DTTNILF+A GA+ G++ ++ RR +K +GFG
Sbjct: 204 LLKILEGSVANVPPQGGRKHPNQEFIQIDTTNILFMAGGAFAGIEEVVKRRIGKKVIGFG 263
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S + +N K ++ DL+ FG+IPEF+GRFPI
Sbjct: 264 ADS-----------------------KANNLTKKEIYAHIQPDDLLKFGLIPEFIGRFPI 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L E L+RILTEPKNA+ +QY+ +F MD V+L F A+ AIA A+E+KTGAR
Sbjct: 301 IGALNPLEVEDLIRILTEPKNALTKQYEKIFKMDNVELVFDEGAITAIAEKAVERKTGAR 360
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES++ D M+E+P ++ I IT D ++ NT P+ I
Sbjct: 361 GLRSIIESIMTDVMFEIPSTENIEKCIITRDVIVDNTKPTLI 402
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 148 GEDVENILLRLLQAADFNVEKAQRGIIYIDEIDKIARRSDNPSIT--RDVSGEGVQQALL 205
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
K+ + P G ++PN +I N
Sbjct: 206 KILEGSVANVPPQGG---RKHPNQEFIQIDTTN 235
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 171 RGIIYIDEIDKIARRSDNPSIT--RDVSGEGVQQALLKI 207
>gi|52425901|ref|YP_089038.1| ATP-dependent protease ATP-binding subunit ClpX [Mannheimia
succiniciproducens MBEL55E]
gi|61211443|sp|Q65RF7.1|CLPX_MANSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|52307953|gb|AAU38453.1| ClpX protein [Mannheimia succiniciproducens MBEL55E]
Length = 412
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 143/219 (65%), Gaps = 21/219 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLDR++ +R + K G G
Sbjct: 210 LLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDRVVQKRIH-KGSGIG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ SL DL LKQ+E DLI +G+IPEF+GR P+
Sbjct: 269 FDAEVKGKEDEVSLTDL-------------------LKQIETEDLIKYGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L+++ LV+ILTEPKNA+ +QYQ LF ++ V+L F+PEAL A+A+ ALE+KTGAR
Sbjct: 310 VAPLSELDEKALVQILTEPKNALTKQYQALFGLENVELEFTPEALNAMAKKALERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVL-KNTAP 237
GLR+I+E LLD+MY++P + L+ + ++ V+ +++AP
Sbjct: 370 GLRSIVEGALLDTMYDLPSLEGLVKVVVDEAVINEHSAP 408
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALLKL 213
>gi|420483198|ref|ZP_14981828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-3]
gi|420515038|ref|ZP_15013506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-3b]
gi|393102423|gb|EJC02987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-3]
gi|393156042|gb|EJC56312.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-3b]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420427671|ref|ZP_14926714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-9]
gi|393041169|gb|EJB42186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-9]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|310657901|ref|YP_003935622.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [[Clostridium] sticklandii]
gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [[Clostridium] sticklandii]
Length = 421
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NVP + + E +Q+DTTNILF+ GA++G+D++I RR EK LGFG
Sbjct: 208 LLKIIEGTKANVPPQGGRKHPHQEFLQIDTTNILFIVGGAFDGIDKIIQRRMGEKALGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + S D+A KQV+ DL+ FG+IPEF+GR P+
Sbjct: 268 A--------KIVSKNDIAVGE--------------IYKQVQTEDLLRFGLIPEFIGRVPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ L+ IL EPKNA+++Q++ LF MDKV L EAL +A+ A+ KKTGAR
Sbjct: 306 VVSLDPLDEKALISILKEPKNALVKQFKKLFEMDKVILDIEDEALVEVAKKAIAKKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +++D MYEVP DI V IT++++ N P I
Sbjct: 366 GLRSILEKVMMDIMYEVPSRDDIEKVVITKESITDNKQPYVI 407
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + A GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQASDYDISKAEKGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ ++ N +I
Sbjct: 210 KIIEGTKANVPPQGG---RKHPHQEFLQIDTTNILFI 243
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALLKI 211
>gi|260432981|ref|ZP_05786952.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416809|gb|EEX10068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
lacuscaerulensis ITI-1157]
Length = 422
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ R + + +E DL+ FG+IPEFVGR P+
Sbjct: 271 ADVRDNDERGVGEI----------------------FQDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ V+L F+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALVTILTKPKNALVKQYQRLFELENVELDFTEDALKAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG ++ V + E+ V + P I
Sbjct: 369 GLRSILEDILLDTMFELPGMKNVTKVVVNEEAVTSDAQPLII 410
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 214
>gi|224824982|ref|ZP_03698088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Pseudogulbenkiania ferrooxidans 2002]
gi|347540403|ref|YP_004847828.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Pseudogulbenkiania sp. NH8B]
gi|224602653|gb|EEG08830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Pseudogulbenkiania ferrooxidans 2002]
gi|345643581|dbj|BAK77414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Pseudogulbenkiania sp. NH8B]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + E +QVDTTNILF+ GA++GL+++I RR + +GFG
Sbjct: 213 LLKLIEGTVASIPPQGGRKHPNQEFIQVDTTNILFICGGAFDGLEKIIRRRSEKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A VS+++++K K VE DLI FG+IPE +GR P+
Sbjct: 273 A---------------------EVSSKDESKSISVLFKDVEPGDLIKFGLIPELIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILT+PKNA+++QYQ LF+++ V+L P AL+ IA+ AL +KTGAR
Sbjct: 312 VATLEELDEEALVTILTQPKNALVKQYQRLFSLEGVELEIRPSALRVIAKQALVRKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLD+MYE+P D + V + E + K P +I
Sbjct: 372 GLRSILERALLDTMYELPSMDNVSRVVVDEKVIEKGDKPLFI 413
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQRGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGTVASIPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 233 PNQEFIQVDTTNILFIC 249
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|443627533|ref|ZP_21111919.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
[Streptomyces viridochromogenes Tue57]
gi|443338972|gb|ELS53228.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
[Streptomyces viridochromogenes Tue57]
Length = 428
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELEAKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|414162391|ref|ZP_11418638.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia felis
ATCC 53690]
gi|410880171|gb|EKS28011.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia felis
ATCC 53690]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 149/235 (63%), Gaps = 27/235 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISSRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AASVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +IL EPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIG 253
GLR+I+ES+LL++M+++PG + + V I+ + V P YI + D D+ G
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI----YADRTDRAG 418
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|346643098|ref|YP_261086.2| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
protegens Pf-5]
gi|341580245|gb|AAY93250.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
protegens Pf-5]
Length = 427
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSQPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
anthropi ATCC 49188]
gi|404319232|ref|ZP_10967165.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
anthropi CTS-325]
gi|166214795|sp|A6X117.1|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
anthropi ATCC 49188]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR D F +++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVRSVDERRIG---------------------DVF-RELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L+F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMESVELSFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVQEVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
Length = 434
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 23/234 (9%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL ++EGT+ +VP + + E +Q+DT+NILF+ GA++GL+
Sbjct: 196 TSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTSNILFICGGAFDGLE 255
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
++I R +K +GFGA + G++ L +L L+QV D
Sbjct: 256 KIIESRIGKKSIGFGA---DVFGQKETDLGEL-------------------LRQVLPEDF 293
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+ FG+IPEF+GR P+ V + L++ LVRIL EPK+A+++QYQ LF MD V LTF +AL
Sbjct: 294 VKFGLIPEFIGRVPVNVSLNPLDEGALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDAL 353
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
AIA+ ALE+KTGARGLRAIME +++D MYE+P +D+ IT+D V P
Sbjct: 354 IAIAKKALERKTGARGLRAIMEGVIMDLMYEIPSQTDVSECLITKDVVEGKEKP 407
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 155 GEDVENILLKIIQAADYDIDRAQCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ +I N +I
Sbjct: 215 IEGTVASVPPQGG---RKHPHQEFIQIDTSNILFIC 247
>gi|420461214|ref|ZP_14960005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-3]
gi|393081730|gb|EJB82448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-3]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|313891580|ref|ZP_07825190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
microaerophilus UPII 345-E]
gi|313120039|gb|EFR43221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
microaerophilus UPII 345-E]
Length = 411
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + EM+Q+DT+ ILF+ GA+ G+D+++++R + +GFG
Sbjct: 210 LLKILEGTVANVPPQGGRKHPNQEMIQLDTSKILFICGGAFAGMDKVVAKRLTKSAVGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + A + L VE DL+ FG+IPEF+GR PI
Sbjct: 270 ADIKKKEEKDVAKI----------------------LNMVEPEDLLKFGLIPEFIGRLPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV L+++ LVRILT+PKNA+I+QY+ L MD V+L F +A++AIA+ A+E+ TGAR
Sbjct: 308 LVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAKKAIERNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++ MY++P D+ ITED V+ N P R
Sbjct: 368 GLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVHNKQPELKR 410
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENILLRLIQAADYDLEKAERGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN I +I
Sbjct: 212 KILEGTVANVPPQGG---RKHPNQEMIQLDTSKILFIC 246
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 213
>gi|383645421|ref|ZP_09957827.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
chartreusis NRRL 12338]
Length = 428
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------QIRSKREMESKDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVQSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|161507349|ref|YP_001577303.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
helveticus DPC 4571]
gi|172048267|sp|A8YUS4.1|CLPX_LACH4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|160348338|gb|ABX27012.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 141/223 (63%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------DVDKIDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+ E LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MY+ P DI V +T+D ++++ P IR
Sbjct: 365 GLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVIIRHAEPKVIR 407
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKIDTTNILFI 243
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|260101782|ref|ZP_05752019.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
gi|417007051|ref|ZP_11945260.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
helveticus MTCC 5463]
gi|112148408|gb|ABI13542.1| Clp protease ATP-binding subunit [Lactobacillus helveticus CNRZ32]
gi|260084426|gb|EEW68546.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
gi|328468550|gb|EGF39552.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
helveticus MTCC 5463]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 141/223 (63%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------DVDKIDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+ E LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MY+ P DI V +T+D ++++ P IR
Sbjct: 365 GLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVIIRHAEPKVIR 407
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKIDTTNILFI 243
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|420478081|ref|ZP_14976736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-23]
gi|393092760|gb|EJB93381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-23]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|209885040|ref|YP_002288897.1| ATP-dependent protease ATP-binding subunit ClpX [Oligotropha
carboxidovorans OM5]
gi|337741328|ref|YP_004633056.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oligotropha
carboxidovorans OM5]
gi|386030344|ref|YP_005951119.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oligotropha
carboxidovorans OM4]
gi|229484078|sp|B6JGU8.1|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
gi|336095412|gb|AEI03238.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oligotropha
carboxidovorans OM4]
gi|336098992|gb|AEI06815.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oligotropha
carboxidovorans OM5]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 148/235 (62%), Gaps = 27/235 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AASVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +IL EPKNA+++QYQ LF M+ V+LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILVEPKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIG 253
GLR+I+ES+LL++M+++PG + + V I+ + V P YI + D D+ G
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI----YADRTDRAG 418
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|420500937|ref|ZP_14999482.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-30]
gi|393151319|gb|EJC51623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-30]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420462904|ref|ZP_14961682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-4]
gi|393080432|gb|EJB81157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-4]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula
bermudensis HTCC2503]
gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula
bermudensis HTCC2503]
Length = 437
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I R + +GF
Sbjct: 224 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIVGGAFAGLDKVIQSRGDGASIGFN 283
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E RR + L++VE DL+ FG+IPEF+GR P+
Sbjct: 284 AEVKELEDRRIGDV----------------------LREVEPEDLLKFGLIPEFIGRLPV 321
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILT PKNA+++QYQ LF M+ V LTF PEAL A+A+ A+ +KTGAR
Sbjct: 322 IATLEDLDEEALVQILTSPKNALVKQYQRLFEMEDVKLTFKPEALVAVAKKAITRKTGAR 381
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME +LLD+M+++P ++ V I + V P Y+ G
Sbjct: 382 GLRSIMEGILLDTMFDLPTLENVEEVVINAEVVEGKGDPLYVYG 425
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 168 GEDVENIVLKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 225
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 226 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFI 259
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 191 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 227
>gi|420479786|ref|ZP_14978432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-34]
gi|393094169|gb|EJB94781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-34]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420436610|ref|ZP_14935603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-28]
gi|393054921|gb|EJB55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-28]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420403122|ref|ZP_14902308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6261]
gi|393020288|gb|EJB21427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori CPY6261]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|421710852|ref|ZP_16150201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R018c]
gi|421722427|ref|ZP_16161686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R056a]
gi|407208728|gb|EKE78636.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R018c]
gi|407226211|gb|EKE95977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R056a]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420455916|ref|ZP_14954741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-14]
gi|393071293|gb|EJB72078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-14]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420460867|ref|ZP_14959663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-27]
gi|393074875|gb|EJB75632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-27]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 424
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 40/237 (16%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GF
Sbjct: 212 LLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+AV D++ L+ +E+ DL+ FG+IPEF+GR P+
Sbjct: 271 ---------------------SAVVKNSDDRPVGEVLRNIESEDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+RIL+EPKNA+++QYQ LF M+ ++L F +AL+ IAR A+ KTGAR
Sbjct: 310 LATLEDLDEDSLIRILSEPKNALVKQYQCLFEMEDIELVFHEDALREIARRAIIHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVP 256
GLR+IME +LLD+M+E+P VLK + GI+ D+V K A P
Sbjct: 370 GLRSIMEKILLDTMFELP-------------VLKG-----VNGIIISDDVVKGKARP 408
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTIASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas
neptunium ATCC 15444]
gi|123128702|sp|Q0C0G0.1|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas
neptunium ATCC 15444]
Length = 420
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ VP + + + E +QVDTTNILF+ GA+ GL+++I+ R +GFG
Sbjct: 211 LLKIMEGTVAAVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIAARGENASIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + E+ D L++VE DL FG+IPEF+GR P+
Sbjct: 271 A---------------------TIKSGEERGVGDT-LREVEPEDLQKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++ILT+PKNA+++QYQ LF M+ V LTF+PEAL A+AR A+ +KTGAR
Sbjct: 309 LATLEDLDEKALIQILTQPKNALLKQYQRLFDMESVQLTFTPEALVAVARRAITRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES+LLD+M+E+P + V I + V N P Y+
Sbjct: 369 GLRSIMESILLDTMFELPNLRGVEEVVINAEVVDGNAEPLYV 410
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIVLKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVAAVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|386756519|ref|YP_006229736.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori PeCan18]
gi|384562777|gb|AFI03243.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori PeCan18]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|208435267|ref|YP_002266933.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori G27]
gi|208433196|gb|ACI28067.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420493356|ref|ZP_14991929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-15]
gi|420527122|ref|ZP_15025520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-15b]
gi|393105950|gb|EJC06497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-15]
gi|393129856|gb|EJC30287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-15b]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420441285|ref|ZP_14940231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-36]
gi|393060346|gb|EJB61218.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-36]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420421066|ref|ZP_14920150.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4161]
gi|393035865|gb|EJB36909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4161]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420531998|ref|ZP_15030368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-28b]
gi|393135450|gb|EJC35847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-28b]
Length = 446
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|254779913|ref|YP_003058019.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori B38]
gi|383750415|ref|YP_005425518.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori ELS37]
gi|420409421|ref|ZP_14908571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4216]
gi|254001825|emb|CAX30068.1| ATP-dependent Clp protease ATP-binding subunit clpX; ATPase
subunit/chaperone protein [Helicobacter pylori B38]
gi|380875161|gb|AFF20942.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori ELS37]
gi|393021293|gb|EJB22425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4216]
Length = 448
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|421714007|ref|ZP_16153332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R32b]
gi|407213736|gb|EKE83590.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R32b]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420493389|ref|ZP_14991960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-16]
gi|393112645|gb|EJC13165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-16]
Length = 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420414405|ref|ZP_14913525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4099]
gi|421722319|ref|ZP_16161584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R055a]
gi|393026739|gb|EJB27836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4099]
gi|407222974|gb|EKE92768.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R055a]
Length = 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|408356354|ref|YP_006844885.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amphibacillus
xylanus NBRC 15112]
gi|407727125|dbj|BAM47123.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amphibacillus
xylanus NBRC 15112]
Length = 423
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 141/223 (63%), Gaps = 25/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTNILF+ GA++G+D+++ R +K +GF
Sbjct: 208 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIDQIVKSRLGKKVIGFD 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ES +A L++V DL+ FG+IPEF+GR P+
Sbjct: 268 AEASESELTKAE-----------------------LLQKVLPEDLLKFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+Q+ LV+IL +PKNA+++QYQ LF MD V+L F EAL+AIA A+E+KTGAR
Sbjct: 305 ISSLEPLDQDALVQILIKPKNALVKQYQRLFQMDNVELEFDQEALEAIAEKAMERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTV-LKNTAPSYI 240
GLR+I+E+++LD M+E+P SDI IT+ T+ +N P+ I
Sbjct: 365 GLRSIIETIMLDVMFELPSRSDIKKCIITKGTIDTENGRPTLI 407
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 210 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNILFI 243
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|385222926|ref|YP_005772059.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SouthAfrica7]
gi|317011705|gb|ADU85452.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SouthAfrica7]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|308185155|ref|YP_003929288.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SJM180]
gi|420471306|ref|ZP_14970009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-11]
gi|308061075|gb|ADO02971.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori SJM180]
gi|393083848|gb|EJB84547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-11]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|207091895|ref|ZP_03239682.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
HPKX_438_AG0C1]
Length = 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
anatis UMN179]
gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
anatis UMN179]
Length = 415
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 140/218 (64%), Gaps = 22/218 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI +VP + + + E ++VDT+ ILF+ GA++GLD++I +R + ++ +GF
Sbjct: 213 LLKLIEGTIASVPPQGGRKHPQQEFLKVDTSKILFICGGAFSGLDKIIEKRTHKDRGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V ++E + QVE DLI FG+IPEFVGR P
Sbjct: 273 ---------------------NANVQSKEKEHDIGELFAQVETEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++E L+RILT PKNA+I+QYQ LFT++ V+L F+PEAL AIA+ AL +KTGA
Sbjct: 312 VVASLAELDEEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAIAKKALARKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
RGLR+I+E +LLD+MY++P + L + + V+ N A
Sbjct: 372 RGLRSIVEGVLLDTMYDLPSLEGLKKVVVDQDVIDNQA 409
>gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
16511]
Length = 405
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + + +Q+DT+NILF+ GA++GL+ +I RR +GFG
Sbjct: 203 LLKIIEGSVVNIPPKGGRKHPNQDFIQIDTSNILFICGGAFDGLNEMIKRRLGGNIMGFG 262
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
Q EE+N L+ VE DL+++G+IPE +GR +
Sbjct: 263 -------------------QKQHSKNEEEN-----LLRFVEPDDLVNYGLIPELIGRLHV 298
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + + E +VRILTEPKNA+++QYQ LF +D V LTF PEAL+ IA+ A+E+KTGAR
Sbjct: 299 IATLNPITVEDMVRILTEPKNALVKQYQKLFELDGVQLTFQPEALEKIAQKAIERKTGAR 358
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +LLD MYE+P + V IT D V K P Y++
Sbjct: 359 GLRSILEEILLDIMYELPELEGYEVVITPDVVEKKAQPLYLK 400
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ + P G ++PN
Sbjct: 168 AEKGIVFIDEIDKIARLGENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGG---RKHPN 224
Query: 339 TGYIWYRYPNTGYIW 353
+I N +I
Sbjct: 225 QDFIQIDTSNILFIC 239
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 170 KGIVFIDEIDKIARLGENRSITRDVSGEGVQQALLKI 206
>gi|421717468|ref|ZP_16156772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R037c]
gi|407218360|gb|EKE88187.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R037c]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|217032416|ref|ZP_03437910.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
gi|298737033|ref|YP_003729563.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
pylori B8]
gi|216945895|gb|EEC24513.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
gi|298356227|emb|CBI67099.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
pylori B8]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|304311291|ref|YP_003810889.1| ATP-dependent Clp protease ATP-binding subunit [gamma
proteobacterium HdN1]
gi|301797024|emb|CBL45237.1| ATP-dependent Clp protease ATP-binding subunit [gamma
proteobacterium HdN1]
Length = 434
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 137/214 (64%), Gaps = 21/214 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++I R + +GF
Sbjct: 221 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKVIQNRSTKSGIGF- 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+V ++EDN LK+VE DL+ FG+IPEFVGR PI
Sbjct: 280 --------------------VASVKSKEDNINVGDTLKEVEPEDLVKFGLIPEFVGRLPI 319
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LVRILTEP+N++ +QYQ LF M+ ++L F +AL A+A+ ALE+KTGAR
Sbjct: 320 IATLEELDEAALVRILTEPRNSLTKQYQKLFEMEDIELDFRTDALHAVAKKALERKTGAR 379
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLK 233
GLR+I+E++LLD+MY+ P + + + ++ V+K
Sbjct: 380 GLRSILENVLLDTMYDAPSLEGVTKVVVDEAVIK 413
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 186 AQVGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 240
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 241 PQQEFLQVDTTNILFIC 257
>gi|440781232|ref|ZP_20959574.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
pasteurianum DSM 525]
gi|440220837|gb|ELP60043.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
pasteurianum DSM 525]
Length = 434
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 28/223 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q++TTNILF+ GA++G+D++I R +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPHQEFIQINTTNILFICGGAFDGIDKIIEHRTRTSSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKD--AFLKQVEARDLIDFGMIPEFVGRF 137
A + KEKD LK + DL+ FG+IPEFVGR
Sbjct: 267 ADV------------------------QSKKEKDIGVLLKDIMPGDLLKFGLIPEFVGRL 302
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PILV +L+++ L+ IL++PKNA+++QY+ LF MD VDL F E+L AIA+ A+ + TG
Sbjct: 303 PILVTLDALDEKALIEILSKPKNALVKQYKKLFQMDSVDLEFKEESLTAIAKEAISRNTG 362
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
ARGLRAI+E ++ D M+++P DI V ITEDT LK+ P +
Sbjct: 363 ARGLRAIIEEMMKDIMFDIPSRQDIKKVSITEDT-LKSKTPEF 404
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQNADYDVERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVASVPPQGG---RKHPHQEFIQINTTNILFIC 243
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|421720412|ref|ZP_16159693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R046Wa]
gi|407219370|gb|EKE89186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R046Wa]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420447671|ref|ZP_14946559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-43]
gi|420467694|ref|ZP_14966444.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-9]
gi|393062277|gb|EJB63133.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-43]
gi|393083271|gb|EJB83982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-9]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|387771175|ref|ZP_10127341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pasteurella
bettyae CCUG 2042]
gi|386902380|gb|EIJ67220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pasteurella
bettyae CCUG 2042]
Length = 411
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 139/219 (63%), Gaps = 21/219 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLDR++ +R K G G
Sbjct: 208 LLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDRVVQKRIY-KGSGIG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ ASL DL KQ+E DLI +G+IPEF+GR P+
Sbjct: 267 FDAEVKGEADEASLTDL-------------------FKQIETEDLIKYGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++ L++ILTEPKNA+ +QYQ LF+++ V+L F+ +AL+A+A AL +KTGAR
Sbjct: 308 VAPLSELDENALIQILTEPKNALTKQYQALFSLEDVELEFTHQALKAMAEKALARKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES LLD+MY++P D+ V + ED + KN AP
Sbjct: 368 GLRSIVESALLDTMYDLPSLKDLTKVIVDEDVINKNQAP 406
>gi|424863301|ref|ZP_18287214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86A]
gi|400757922|gb|EJP72133.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [SAR86 cluster
bacterium SAR86A]
Length = 418
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 29/222 (13%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI ++P + + + E +Q+DT+NILF+ GA++GL+++I +R N+ +GF
Sbjct: 207 LLKLIEGTIASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLNKVIEQRTNKTGIGF- 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQ----VEARDLIDFGMIPEFVG 135
SAE D+K K L + +E DL+ +G+IPEFVG
Sbjct: 266 ------------------------SAEVDSKSKITSLNKNIDDLEPEDLVKYGLIPEFVG 301
Query: 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK 195
R P++ H L+++ LVRIL EPKNA++ QY+ LF +D V+L F EAL+ IA+ A+ +K
Sbjct: 302 RLPVISNLHELDEDALVRILKEPKNALVNQYKHLFEIDNVELNFRDEALKEIAKQAISRK 361
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
TGARGLR+IME LL+++M+E+P D+ V I E TV P
Sbjct: 362 TGARGLRSIMEDLLMETMFELPNDDLEKVIIDEKTVASKNDP 403
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 172 AELGIVYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKLIEGTIASIPPQGG---RKH 226
Query: 337 PNTGYIWYRYPNTGYIW 353
P +I N +I
Sbjct: 227 PQQEFIQIDTSNILFIC 243
>gi|420450901|ref|ZP_14949756.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-45]
gi|393066236|gb|EJB67062.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-45]
Length = 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420498488|ref|ZP_14997045.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-26]
gi|393152467|gb|EJC52763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-26]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|393773237|ref|ZP_10361635.1| ATP-dependent protease ATP-binding subunit ClpX [Novosphingobium
sp. Rr 2-17]
gi|392721117|gb|EIZ78584.1| ATP-dependent protease ATP-binding subunit ClpX [Novosphingobium
sp. Rr 2-17]
Length = 420
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 131/198 (66%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLD++IS R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPDKRRVGEL----------------------LQKAEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L+ E LV+IL EPKNA+I+QY LF ++ V+LTF+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 IATLNDLDIEALVKILKEPKNALIKQYARLFELEDVELTFTDDALEAIAQKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+ESLLLD+M+++P
Sbjct: 369 GLRSIVESLLLDTMFDLP 386
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQQGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 QGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKL 214
>gi|385221245|ref|YP_005782717.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori India7]
gi|317010052|gb|ADU80632.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori India7]
Length = 448
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|27262354|gb|AAN87458.1| ATP-dependent clp protease ATP-binding subunit ClpX [Heliobacillus
mobilis]
Length = 420
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D+LI R +K +GF
Sbjct: 209 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIDKLIMNRVGKKAMGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + G++ ++ ++ L+ + DL+ FG+IPEFVGR P+
Sbjct: 269 A---DIKGKQDKNIGEV-------------------LRDILPGDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRILTEPKNA+I+QYQ F +D+V+L F EAL+AIA A+++ TGAR
Sbjct: 307 IVTLDALDEDALVRILTEPKNALIKQYQKFFELDQVNLEFQDEALRAIAHEAIKRNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD M+++P +D+ +T++ +LK P +
Sbjct: 367 GLRAIIEEVMLDVMFDIPSRNDVTKCMVTKEVILKQKEPVLV 408
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 245
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 212
>gi|384891737|ref|YP_005765870.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
908]
gi|385224417|ref|YP_005784343.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
2017]
gi|385232273|ref|YP_005792192.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
2018]
gi|307638046|gb|ADN80496.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
908]
gi|325996650|gb|ADZ52055.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
2018]
gi|325998239|gb|ADZ50447.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
2017]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|399002987|ref|ZP_10705661.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM18]
gi|398123673|gb|EJM13214.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM18]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P Y+
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYL 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|429333162|ref|ZP_19213867.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
CSV86]
gi|428762168|gb|EKX84377.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
CSV86]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYGKLFEMEGVDLEFRSDALKSVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 372 GLRSILEGILLDTMYEIPSQKDVSKVVIDESVIDGTSQPLLI 413
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|326386906|ref|ZP_08208520.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208586|gb|EGD59389.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 417
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 131/201 (65%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GL+R+I+ R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIIADRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPDKRRVGEL----------------------LQKAEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L+ + LVRIL EPKNA+++QYQ LF ++ V LTF+ EAL+AIA+ A+E+KTGAR
Sbjct: 309 IATLNDLDIDALVRILREPKNALVKQYQKLFELEDVQLTFTEEALEAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLR+I+E LLLD+M+++P D
Sbjct: 369 GLRSIVEGLLLDTMFDLPTLD 389
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQHGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
>gi|420452755|ref|ZP_14951598.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-6]
gi|393067317|gb|EJB68130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-6]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|346995187|ref|ZP_08863259.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp. TW15]
Length = 421
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 139/224 (62%), Gaps = 27/224 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A DN E+ K +E DL+ FG+IPEFVGR
Sbjct: 271 ADV------------------------RDNDERGVGEIFKDLEPEDLLKFGLIPEFVGRL 306
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P+L L+++ LV ILT PKNA+++QYQ LF ++ +L F+ +AL+AIA+ A+E+KTG
Sbjct: 307 PVLATLEDLDEDALVTILTSPKNALVKQYQRLFELEDAELGFTDDALKAIAKKAIERKTG 366
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
ARGLR+I+E +LLD+M+E+PG ++ V + E+ V ++ P I
Sbjct: 367 ARGLRSILEDILLDTMFELPGMKNVTEVVVNEEAVTSDSQPLII 410
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 214
>gi|302551408|ref|ZP_07303750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
viridochromogenes DSM 40736]
gi|302469026|gb|EFL32119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
viridochromogenes DSM 40736]
Length = 428
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEARAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------QIRSKREMESKDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVQSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 439
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ +R + +GF
Sbjct: 213 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIVEQRISAGSIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V + DN + D L++VE +DL FG+IPEF+GR P+
Sbjct: 272 --------------------NAEVVNKNDN-DIDDLLRKVEPKDLTKFGLIPEFIGRVPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V SL ++ +VRIL+EPKNA+ +QYQ LF +D V L F+ EAL IA+LA+++K GAR
Sbjct: 311 MVSLQSLTKDAMVRILSEPKNALTRQYQKLFELDNVKLEFTREALDEIAQLAVDRKIGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLR+I+E++++D MYE+P D + + IT+ V K P +
Sbjct: 371 GLRSILETVMMDLMYEIPSDDTIGICTITKGVVDKTGQPELV 412
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQSADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 217 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 249
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
>gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius LAA1]
gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|384135661|ref|YP_005518375.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius LAA1]
gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|339289746|gb|AEJ43856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 423
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++GL+ +I RR K +GFG
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLETIIKRRLGSKVIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A SA + K+ A L+ V DL+ FG+IPEF+GR P+
Sbjct: 269 A---------------------AGSASSETKDS-AILQHVLPEDLLKFGLIPEFIGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E L RILTEPKNA+++Q+Q L MD V L F +AL+ IA+ A+ + TGAR
Sbjct: 307 IATLDALDEEALKRILTEPKNAIVKQFQKLLDMDNVVLEFHEDALETIAKEAIRRGTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+ES++LD MYE+P D+ IT+ VL+ P +R
Sbjct: 367 GLRAIIESIMLDVMYELPSRDDVQKCIITKAAVLREGPPIVLR 409
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDIEKAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 212
>gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
str. Cudo]
gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M13/05/1]
gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
B1/94]
gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis M163/99/10]
gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis B2/94]
gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M644/93/1]
gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
F5/99]
gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis M292/94/1]
gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M490/95/1]
gi|340790727|ref|YP_004756192.1| ATP-dependent protease, ATP-binding subunit ClpX [Brucella
pinnipedialis B2/94]
gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
str. Cudo]
gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
B1/94]
gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M13/05/1]
gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M644/93/1]
gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis B2/94]
gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis M163/99/10]
gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
F5/99]
gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
M490/95/1]
gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
pinnipedialis M292/94/1]
gi|340559186|gb|AEK54424.1| ATP-dependent protease, ATP-binding subunit ClpX [Brucella
pinnipedialis B2/94]
Length = 424
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDYALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
HTCC2601]
gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
HTCC2601]
Length = 421
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R + K +E DL+ FG+IPEFVGR P+
Sbjct: 270 ADVRDPEERGTGEV----------------------FKDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT PKNA+++QYQ LF M+ LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 308 IATLEDLDEDALVTILTAPKNALVKQYQRLFEMEDTQLTFTDDALSAIAKKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+E+PG D + V + ++ V + P I
Sbjct: 368 GLRSILEGILLDTMFELPGMDEVTEVVVNDEAVNSDAKPLMI 409
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 213
>gi|77459918|ref|YP_349425.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
fluorescens Pf0-1]
gi|398974166|ref|ZP_10684903.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM25]
gi|123730994|sp|Q3K9X0.1|CLPX_PSEPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|77383921|gb|ABA75434.1| ATP-dependent specificity component of clpP serine protease,
chaperone [Pseudomonas fluorescens Pf0-1]
gi|398142050|gb|EJM30955.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM25]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
saccharolyticum WM1]
gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
saccharolyticum WM1]
Length = 433
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q++TTNILF+ GA++GL+++I RR + +GF
Sbjct: 210 LLKILEGTVASVPPQGGRKHPHQELLQINTTNILFICGGAFDGLEKIIERRLSAGSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + + DL LK+ +DL+ FG+IPEF+GR PI
Sbjct: 270 A---EIVDKNKTDIDDL-------------------LKKTLPQDLVKFGLIPEFIGRVPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E LV+ILTEPKNA+++QYQ LF +D V L + EA++ IA LA+E+KTGAR
Sbjct: 308 TVSLELLDREALVKILTEPKNALVKQYQKLFELDDVKLELTREAVERIAELAVERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES++++ MYE+P S I + IT+D V K P I
Sbjct: 368 GLRSIMESVMMELMYEIPSDSSIGICTITKDVVDKKGEPELI 409
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLIQAADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPHQELLQINTTNILFIC 246
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|389681306|ref|ZP_10172651.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
chlororaphis O6]
gi|399007986|ref|ZP_10710480.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM17]
gi|425900380|ref|ZP_18876971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388554842|gb|EIM18090.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
chlororaphis O6]
gi|397890343|gb|EJL06825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398119026|gb|EJM08742.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM17]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|312074325|ref|XP_003139920.1| hypothetical protein LOAG_04335 [Loa loa]
gi|307764922|gb|EFO24156.1| hypothetical protein LOAG_04335 [Loa loa]
Length = 364
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 136/212 (64%), Gaps = 13/212 (6%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
L ++EGT+V V + S G V VDTTNILF+ASGA+N LDR++S+R ++K +GFG
Sbjct: 138 FLKLVEGTVVKVKQPGS----NGTRVDVDTTNILFIASGAFNNLDRIVSQRLHKKLVGFG 193
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + D S K++D LKQ + DLI +GM+PE VGRFP+
Sbjct: 194 AGKDEELCCHYLTGKDETKVS---------KDRDDLLKQADHIDLIKYGMVPELVGRFPV 244
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LVPF SL +ELLVRI+ EPK++++ Q + F +D + L F+ AL+ IAR A +K TGAR
Sbjct: 245 LVPFTSLTEELLVRIMKEPKSSIVSQAEKQFLLDDIRLCFTDCALKEIARTAAQKGTGAR 304
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
LR+I E +LLD+ Y++PG++I + I + V
Sbjct: 305 ALRSITEKVLLDAKYDLPGTEIHKLVIDANVV 336
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
RGIVFLDE DKI + RDVGG GVQQ LK+
Sbjct: 104 RGIVFLDEFDKISSSLDFESRSFRDVGGRGVQQAFLKL 141
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 317
A GIVFLDE DKI + RDVGG GVQQ LK+
Sbjct: 102 AQRGIVFLDEFDKISSSLDFESRSFRDVGGRGVQQAFLKL 141
>gi|425740489|ref|ZP_18858660.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-487]
gi|425494753|gb|EKU60948.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-487]
Length = 437
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|398919615|ref|ZP_10658870.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM49]
gi|398923823|ref|ZP_10660916.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM48]
gi|426408622|ref|YP_007028721.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
UW4]
gi|398169637|gb|EJM57615.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM49]
gi|398174660|gb|EJM62449.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM48]
gi|426266839|gb|AFY18916.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
UW4]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|398860149|ref|ZP_10615807.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM79]
gi|398867304|ref|ZP_10622768.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM78]
gi|398879705|ref|ZP_10634793.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM67]
gi|398886633|ref|ZP_10641500.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM60]
gi|398904000|ref|ZP_10652022.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM50]
gi|398938376|ref|ZP_10667779.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM41(2012)]
gi|398996367|ref|ZP_10699224.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM21]
gi|407364029|ref|ZP_11110561.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mandelii JR-1]
gi|398126898|gb|EJM16319.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM21]
gi|398165924|gb|EJM54034.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM41(2012)]
gi|398176429|gb|EJM64148.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM50]
gi|398188904|gb|EJM76193.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM60]
gi|398195849|gb|EJM82876.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM67]
gi|398235354|gb|EJN21185.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM79]
gi|398237282|gb|EJN23036.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM78]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|395773127|ref|ZP_10453642.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
acidiscabies 84-104]
Length = 429
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKLELQSKDQF-EAVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|71734283|ref|YP_273936.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|123637276|sp|Q48KY9.1|CLPX_PSE14 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|71554836|gb|AAZ34047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGTSKPLLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|420424506|ref|ZP_14923570.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-5]
gi|393043093|gb|EJB44097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-5]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|398840798|ref|ZP_10598030.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM102]
gi|398109810|gb|EJL99726.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM102]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
22.1-21]
gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
22.1-21]
Length = 396
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 135/199 (67%), Gaps = 22/199 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NATVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVP 217
RGLR+I+E++LLD+MY++P
Sbjct: 368 RGLRSIVEAVLLDTMYDLP 386
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>gi|420437966|ref|ZP_14936943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-29]
gi|393057341|gb|EJB58243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-29]
Length = 452
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|422674864|ref|ZP_16734214.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aceris str. M302273]
gi|330972588|gb|EGH72654.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aceris str. M302273]
Length = 427
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGTSKPLLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|15645984|ref|NP_208165.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori 26695]
gi|410024609|ref|YP_006893862.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Rif1]
gi|410502376|ref|YP_006936903.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Rif2]
gi|410682894|ref|YP_006935296.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori 26695]
gi|419416381|ref|ZP_13956941.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori P79]
gi|6225167|sp|O25926.1|CLPX_HELPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|2314544|gb|AAD08417.1| ATP-dependent protease ATPase subunit (clpX) [Helicobacter pylori
26695]
gi|384375349|gb|EIE30647.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori P79]
gi|409894535|gb|AFV42593.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori 26695]
gi|409896266|gb|AFV44188.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Rif1]
gi|409897927|gb|AFV45781.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Rif2]
Length = 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|295838902|ref|ZP_06825835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SPB74]
gi|197695454|gb|EDY42387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SPB74]
Length = 428
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+R+I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLERIIEARAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D L++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKREIESSD-HLREVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ HSL++E L+RIL EP++A+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 VTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|167522799|ref|XP_001745737.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776086|gb|EDQ89708.1| predicted protein [Monosiga brevicollis MX1]
Length = 595
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRG-EMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGF 78
LL +LEGTIV VP+K S K+RG E +DT+NILF+ SGA+NGL++LIS R+ + LGF
Sbjct: 362 LLKLLEGTIVQVPDK-SASKVRGQESYSIDTSNILFIGSGAFNGLEKLISNRQAKGSLGF 420
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A L + A V + L+ V + DL+ FG+IPEFVGRFP
Sbjct: 421 NAT--------------LKDPKAPVDGK--------LLRSVISTDLVKFGLIPEFVGRFP 458
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+V +L++ L+ +LTEPK++++ QY+ LF MD +L P AL+AIA ALE+ GA
Sbjct: 459 CVVHLEALDRNDLIHVLTEPKHSLLSQYKGLFRMDNAELVLEPSALEAIADKALERGIGA 518
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+M++ PGS V I + V+ P YI
Sbjct: 519 RGLRSILEQVLLDAMFDTPGSTHASVIINDKVVMGEAEPEYI 560
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 276
RGIVFLDE+DKIG+ G RDV GEGVQQ +LK+
Sbjct: 329 RGIVFLDEIDKIGSPKGGFVATRDVSGEGVQQALLKL 365
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A F GIVFLDE+DKIG+ G RDV GEGVQQ +LK+
Sbjct: 306 GEDVESVLYKLLAACNFNVEQAQRGIVFLDEIDKIGSPKGGFVATRDVSGEGVQQALLKL 365
>gi|66044993|ref|YP_234834.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. syringae B728a]
gi|237803595|ref|ZP_04591180.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|257483814|ref|ZP_05637855.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|289627505|ref|ZP_06460459.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289649944|ref|ZP_06481287.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aesculi str. 2250]
gi|289679416|ref|ZP_06500306.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. syringae FF5]
gi|416015384|ref|ZP_11562997.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. B076]
gi|416028211|ref|ZP_11571267.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422406895|ref|ZP_16483912.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422583544|ref|ZP_16658667.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|422591340|ref|ZP_16665985.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422595335|ref|ZP_16669623.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|422606344|ref|ZP_16678354.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. mori str. 301020]
gi|422630347|ref|ZP_16695545.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. pisi str. 1704B]
gi|422645839|ref|ZP_16708974.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|422650230|ref|ZP_16713036.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|422664683|ref|ZP_16724556.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|422683345|ref|ZP_16741606.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|424066810|ref|ZP_17804272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|424071463|ref|ZP_17808888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|440721403|ref|ZP_20901802.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP34876]
gi|440724450|ref|ZP_20904732.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP34881]
gi|443644727|ref|ZP_21128577.1| ATP-dependent Clp protease, ATP-binding subunit [Pseudomonas
syringae pv. syringae B64]
gi|81308383|sp|Q4ZVM6.1|CLPX_PSEU2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|63255700|gb|AAY36796.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. syringae B728a]
gi|298159271|gb|EFI00329.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325362|gb|EFW81429.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327653|gb|EFW83661.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330868374|gb|EGH03083.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330878773|gb|EGH12922.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330882124|gb|EGH16273.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330889996|gb|EGH22657.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. mori str. 301020]
gi|330939707|gb|EGH43002.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330959388|gb|EGH59648.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330963319|gb|EGH63579.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330975102|gb|EGH75168.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330985640|gb|EGH83743.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331012680|gb|EGH92736.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331025577|gb|EGI05633.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|407998843|gb|EKG39241.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|408001927|gb|EKG42202.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|440363824|gb|ELQ00983.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP34876]
gi|440370094|gb|ELQ07040.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP34881]
gi|443284744|gb|ELS43749.1| ATP-dependent Clp protease, ATP-binding subunit [Pseudomonas
syringae pv. syringae B64]
Length = 427
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGTSKPLLI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|28870880|ref|NP_793499.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213968835|ref|ZP_03396976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato T1]
gi|301384119|ref|ZP_07232537.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato Max13]
gi|302059518|ref|ZP_07251059.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato K40]
gi|302135031|ref|ZP_07261021.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422660629|ref|ZP_16723037.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|38257469|sp|Q87YR7.1|CLPX_PSESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|28854129|gb|AAO57194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213926438|gb|EEB59992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
syringae pv. tomato T1]
gi|331019230|gb|EGH99286.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 427
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGTSKPLLI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|420498453|ref|ZP_14997012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25]
gi|420527163|ref|ZP_15025558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25c]
gi|420530501|ref|ZP_15028882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25d]
gi|393111692|gb|EJC12214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25]
gi|393135027|gb|EJC35431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25d]
gi|393135130|gb|EJC35532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-25c]
Length = 446
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420439614|ref|ZP_14938574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-30]
gi|393057640|gb|EJB58536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-30]
Length = 452
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420422814|ref|ZP_14921888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-4]
gi|420469492|ref|ZP_14968212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-10]
gi|420471414|ref|ZP_14970112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-18]
gi|420481504|ref|ZP_14980141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-2]
gi|420511924|ref|ZP_15010407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-2b]
gi|420518714|ref|ZP_15017159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-5b]
gi|393042765|gb|EJB43770.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-4]
gi|393083915|gb|EJB84613.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-10]
gi|393091878|gb|EJB92504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-18]
gi|393098738|gb|EJB99319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-2]
gi|393128617|gb|EJC29057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-5b]
gi|393156987|gb|EJC57248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-2b]
Length = 452
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|424941030|ref|ZP_18356793.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
aeruginosa NCMG1179]
gi|346057476|dbj|GAA17359.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
aeruginosa NCMG1179]
Length = 436
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+R+I R +GF
Sbjct: 222 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGF- 280
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E K+ K+VE DL+ FG+IPEFVGR P+
Sbjct: 281 --------------------NAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+AR ALE+KTGAR
Sbjct: 321 IATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 381 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMI 422
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 187 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 241
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 242 PQQEFLQVDTRNILFIC 258
>gi|40889781|pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 229
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 230 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 266
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 267 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 326
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 327 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 367
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 192
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 193 GNFIQIDTSDILFIC 207
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174
>gi|398948872|ref|ZP_10672974.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM33]
gi|398160046|gb|EJM48328.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM33]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDETALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|386746811|ref|YP_006220028.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori HUP-B14]
gi|420416061|ref|ZP_14915174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4053]
gi|384553060|gb|AFI08008.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori HUP-B14]
gi|393031966|gb|EJB33037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4053]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|302519064|ref|ZP_07271406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SPB78]
gi|318060126|ref|ZP_07978849.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
SA3_actG]
gi|318076384|ref|ZP_07983716.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
SA3_actF]
gi|333027109|ref|ZP_08455173.1| putative ATP-dependent protease ATP-binding subunit ClpX
[Streptomyces sp. Tu6071]
gi|302427959|gb|EFK99774.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SPB78]
gi|332746961|gb|EGJ77402.1| putative ATP-dependent protease ATP-binding subunit ClpX
[Streptomyces sp. Tu6071]
Length = 428
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+R+I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLERIIEARAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D L++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKREIESSD-HLREVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ HSL++E L+RIL EP++A+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 VTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|449450117|ref|XP_004142810.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Cucumis sativus]
Length = 619
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 155/245 (63%), Gaps = 16/245 (6%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VP+ + + RG+ +Q+DT NILF+ GA+ GL++ IS R+++ +GFG
Sbjct: 365 LLKMLEGTVVDVPDTGARKHPRGDTIQMDTKNILFICGGAFVGLEKCISDRQHDSSIGFG 424
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ++ R DL S L+ VE+ DLI +G+IPEFVGR PI
Sbjct: 425 AP-VRASMRTGKLTEDLVTSS--------------MLENVESGDLITYGLIPEFVGRCPI 469
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L+++ LV++LT+PKNA+ +QY+ + M+ V+L F+ AL+ IAR A++K TGAR
Sbjct: 470 LVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFTENALRMIARKAMKKNTGAR 529
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIH 259
GLR+I+E++L ++M+EVP S+ + + ++ + + S G L +VD++
Sbjct: 530 GLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC-GAKILCDVDELTQCSKSE 588
Query: 260 QLRDV 264
+R++
Sbjct: 589 IMRNL 593
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIV++DEVDKI ++ RDV GEGVQQ +LK+ + P+TG ++P
Sbjct: 330 AQRGIVYIDEVDKITKKSESLNSGRDVSGEGVQQALLKMLEGTVV-DVPDTG--ARKHPR 386
Query: 339 TGYIWYRYPNTGYIW 353
I N +I
Sbjct: 387 GDTIQMDTKNILFIC 401
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 332 RGIVYIDEVDKITKKSESLNSGRDVSGEGVQQALLKM 368
>gi|420457852|ref|ZP_14956662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-26]
gi|421715579|ref|ZP_16154896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R036d]
gi|393075373|gb|EJB76127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-26]
gi|407215335|gb|EKE85175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R036d]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|260549097|ref|ZP_05823318.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
gi|260407825|gb|EEX01297.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
Length = 437
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|402771335|ref|YP_006590872.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylocystis
sp. SC2]
gi|401773355|emb|CCJ06221.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylocystis
sp. SC2]
Length = 421
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRNTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V + ++ + D F +QV+ DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AATVQSPDERRTGDIF-RQVQPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L RILTEPKNA+++QYQ LF M+ V+LTF +AL ++AR A+E++TGAR
Sbjct: 308 IATLEDLDEDALKRILTEPKNALVKQYQRLFEMENVELTFQDDALSSVARKAIERRTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG + + V I + V P YI
Sbjct: 368 GLRSIMEGILLDTMFDLPGLEGVEQVVIGPEVVEGKARPLYI 409
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYVDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72]
gi|166214754|sp|A1K782.1|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72]
Length = 422
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI ++P + + + +QVDTTN+LF+ GA++GLD++I R + +GFG
Sbjct: 212 LLKLIEGTIASIPPQGGRKHPNQDFIQVDTTNVLFICGGAFDGLDKVIRNRTEKMGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ +L + +QVE DL+ FG+IPEFVGR P+
Sbjct: 272 A---EVKSRQGKNLTET-------------------FRQVEPEDLVKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++IL EPKNA+++QYQ LF+M+ VDL P AL A+AR A+++KTGAR
Sbjct: 310 VATLQELDEDALIQILIEPKNALVKQYQKLFSMEGVDLEIRPAALHAVARKAIKRKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ LLD MY++P D + V + E+T+ + + P I
Sbjct: 370 GLRSILEAALLDIMYDLPQLDGVEKVVVDENTIEEGSKPLLI 411
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQQGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTIASIPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 232 PNQDFIQVDTTNVLFIC 248
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 QGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|108563744|ref|YP_628060.1| ATP-dependent protease ATP-binding subunit ClpX, partial
[Helicobacter pylori HPAG1]
gi|107837517|gb|ABF85386.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1]
Length = 307
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 102 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 160
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 161 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 197
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 198 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 257
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 258 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 298
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 67 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 123
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 124 GNFIQIDTSDILFIC 138
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 69 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 105
>gi|15596999|ref|NP_250493.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PAO1]
gi|116049752|ref|YP_791441.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa UCBPP-PA14]
gi|152987449|ref|YP_001348853.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PA7]
gi|218892244|ref|YP_002441111.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa LESB58]
gi|254234896|ref|ZP_04928219.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa C3719]
gi|254240195|ref|ZP_04933517.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 2192]
gi|296389807|ref|ZP_06879282.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PAb1]
gi|313110499|ref|ZP_07796384.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 39016]
gi|355644078|ref|ZP_09053618.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
sp. 2_1_26]
gi|386059305|ref|YP_005975827.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa M18]
gi|386065647|ref|YP_005980951.1| ATP-dependent protease ATP-binding subunit [Pseudomonas aeruginosa
NCGM2.S1]
gi|392984725|ref|YP_006483312.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa DK2]
gi|416854316|ref|ZP_11910794.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 138244]
gi|416872416|ref|ZP_11916654.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 152504]
gi|418585583|ref|ZP_13149631.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa MPAO1/P1]
gi|418591337|ref|ZP_13155236.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa MPAO1/P2]
gi|419755332|ref|ZP_14281687.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PADK2_CF510]
gi|421154508|ref|ZP_15614013.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 14886]
gi|421161185|ref|ZP_15620151.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 25324]
gi|421168557|ref|ZP_15626633.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 700888]
gi|421175071|ref|ZP_15632768.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa CI27]
gi|421181101|ref|ZP_15638619.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa E2]
gi|421516443|ref|ZP_15963129.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PAO579]
gi|21263483|sp|Q9I2U0.1|CLPX_PSEAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|122258863|sp|Q02KU5.1|CLPX_PSEAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|166214805|sp|A6V718.1|CLPX_PSEA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|226706595|sp|B7VB75.1|CLPX_PSEA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|9947785|gb|AAG05191.1|AE004606_5 ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PAO1]
gi|115584973|gb|ABJ10988.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126166827|gb|EAZ52338.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa C3719]
gi|126193573|gb|EAZ57636.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 2192]
gi|150962607|gb|ABR84632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
aeruginosa PA7]
gi|218772470|emb|CAW28252.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa LESB58]
gi|310882886|gb|EFQ41480.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 39016]
gi|334844151|gb|EGM22729.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 138244]
gi|334845945|gb|EGM24503.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa 152504]
gi|347305611|gb|AEO75725.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa M18]
gi|348034206|dbj|BAK89566.1| ATP-dependent protease ATP-binding subunit [Pseudomonas aeruginosa
NCGM2.S1]
gi|354829406|gb|EHF13481.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
sp. 2_1_26]
gi|375044272|gb|EHS36881.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa MPAO1/P1]
gi|375049877|gb|EHS42365.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa MPAO1/P2]
gi|384398029|gb|EIE44437.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PADK2_CF510]
gi|392320230|gb|AFM65610.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa DK2]
gi|404350171|gb|EJZ76508.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PAO579]
gi|404521909|gb|EKA32463.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 14886]
gi|404529366|gb|EKA39412.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 700888]
gi|404533024|gb|EKA42877.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa CI27]
gi|404540647|gb|EKA50044.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa ATCC 25324]
gi|404544329|gb|EKA53518.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa E2]
gi|453047165|gb|EME94880.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa PA21_ST175]
Length = 426
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+R+I R +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E K+ K+VE DL+ FG+IPEFVGR P+
Sbjct: 271 --------------------NAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+AR ALE+KTGAR
Sbjct: 311 IATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMI 412
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|398871357|ref|ZP_10626672.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM74]
gi|398206298|gb|EJM93065.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM74]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|420489897|ref|ZP_14988487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-11]
gi|420522064|ref|ZP_15020490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-11b]
gi|421710935|ref|ZP_16150279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R030b]
gi|393104696|gb|EJC05252.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-11]
gi|393130294|gb|EJC30723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-11b]
gi|407213140|gb|EKE82998.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R030b]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420474812|ref|ZP_14973485.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-19]
gi|393087845|gb|EJB88498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-19]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|422640407|ref|ZP_16703834.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae Cit 7]
gi|440746733|ref|ZP_20926013.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP39023]
gi|330952798|gb|EGH53058.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae Cit 7]
gi|440370993|gb|ELQ07858.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae BRIP39023]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGTSKPLLI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|398849722|ref|ZP_10606451.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM80]
gi|398966270|ref|ZP_10681429.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM30]
gi|398985562|ref|ZP_10691097.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM24]
gi|399015405|ref|ZP_10717678.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM16]
gi|424922479|ref|ZP_18345840.1| ClpX [Pseudomonas fluorescens R124]
gi|398108656|gb|EJL98609.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM16]
gi|398146238|gb|EJM34994.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM30]
gi|398153941|gb|EJM42432.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM24]
gi|398250437|gb|EJN35757.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Pseudomonas
sp. GM80]
gi|404303639|gb|EJZ57601.1| ClpX [Pseudomonas fluorescens R124]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|394987651|ref|ZP_10380490.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfuricella
denitrificans skB26]
gi|393792870|dbj|GAB70129.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfuricella
denitrificans skB26]
Length = 421
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 21/213 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + E VQ+DTTNILF+ GA++GLD++I R + +GFG
Sbjct: 210 LLKLIEGTTASVPPQGGRKHPNQEFVQIDTTNILFICGGAFSGLDKVIRMRSEKGGIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V +++D KE A L+ VE DLI FG+IPEFVGR P+
Sbjct: 270 A---------------------EVKSKDDRKEIGAVLRDVEPEDLIKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+RILTEPKNA+I+QYQ LF M+ V+L F +L AIA+ AL +KTGAR
Sbjct: 309 IATLEDLDEHALMRILTEPKNALIKQYQKLFAMEGVELEFRENSLLAIAKKALARKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVL 232
GLR+I+E LLD MY++P + + +D V+
Sbjct: 369 GLRSILEHTLLDIMYDLPSMSNVAKAVIDDGVV 401
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 213
>gi|420505119|ref|ZP_15003642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-62]
gi|393153847|gb|EJC54133.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-62]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|168335353|ref|ZP_02693448.1| ATP-dependent protease ATP-binding subunit [Epulopiscium sp. 'N.t.
morphotype B']
Length = 420
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + E +Q+DTTNILF+ GA++G+D++I +R EK +GFG
Sbjct: 209 LLKILEGTVASIPPQGGRKHPHQEFLQLDTTNILFICGGAFDGIDKIIEKRTGEKTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ S+ +L LK++E +DL+ FG+IPEFVGR P
Sbjct: 269 ATVV---SKKEKSIGEL-------------------LKKLEPQDLLKFGLIPEFVGRVPA 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L RILTEPKNA+I+QY LF D V L F+ EAL +A+LA++++TGAR
Sbjct: 307 IVTLENLDEEALRRILTEPKNAIIKQYAKLFKFDDVKLEFTIEALAKVAKLAIDRQTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E+++ D M+E+P SD L I + V+ P I
Sbjct: 367 GLRSILENVMRDIMFEIPSMSDTLDKVIISEAVIDGAEPELI 408
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 174 AKIGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALLKILEGTVASIPPQGG---RKH 228
Query: 337 PNTGYIWYRYPNTGYIW 353
P+ ++ N +I
Sbjct: 229 PHQEFLQLDTTNILFIC 245
>gi|375090913|ref|ZP_09737220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helcococcus
kunzii ATCC 51366]
gi|374565049|gb|EHR36327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helcococcus
kunzii ATCC 51366]
Length = 403
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++ NVP K + E +QVDT+NILF+ GA+ G++++I R ++K +GFG
Sbjct: 205 LLKLIEGSVANVPPKGGRKHPNQEYIQVDTSNILFIVGGAFEGIEQIIESRTDKKTIGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ +L N EKD LK + +DL+ +G+IPEF+GR PI
Sbjct: 265 S--------------NLGNSK---------DEKDKVLKNILPQDLMKYGLIPEFIGRIPI 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V LN+E LVRILTEPKNA+I+QY+ LF +D V+L F ++ IA+LA+++ TGAR
Sbjct: 302 IVTLEELNEEALVRILTEPKNALIKQYEELFKLDGVELIFEEGSISEIAKLAIKRNTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E LLD M+E+P DI ++ +T+ + +P
Sbjct: 362 GLRAILEDKLLDIMFEIPNRKDISKCLVSVETIRDDKSP 400
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 149 GEDVENVILKLVQAANYDIERAQKGIIYIDEIDKITRKAENVSITRDVSGEGVQQALLKL 208
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN YI N +I
Sbjct: 209 IEGSVANVPPKGG---RKHPNQEYIQVDTSNILFI 240
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 172 KGIIYIDEIDKITRKAENVSITRDVSGEGVQQALLKL 208
>gi|445437356|ref|ZP_21441002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC021]
gi|444753938|gb|ELW78574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC021]
Length = 437
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|424057019|ref|ZP_17794536.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
nosocomialis Ab22222]
gi|407440552|gb|EKF47069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
nosocomialis Ab22222]
Length = 437
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|420486553|ref|ZP_14985161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-8]
gi|420520440|ref|ZP_15018871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-8b]
gi|393104106|gb|EJC04663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-8]
gi|393127027|gb|EJC27472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-8b]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420479938|ref|ZP_14978582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-1]
gi|420511889|ref|ZP_15010374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-1b]
gi|393097851|gb|EJB98443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-1]
gi|393118560|gb|EJC19057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-1b]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420444407|ref|ZP_14943329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-41]
gi|393058534|gb|EJB59423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-41]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420431498|ref|ZP_14930517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-16]
gi|393049091|gb|EJB50057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-16]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420427947|ref|ZP_14926982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-17]
gi|420431113|ref|ZP_14930137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-20]
gi|420453029|ref|ZP_14951868.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-8]
gi|420476446|ref|ZP_14975112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-21]
gi|393045180|gb|EJB46167.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-20]
gi|393045606|gb|EJB46586.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-17]
gi|393070637|gb|EJB71426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-8]
gi|393089726|gb|EJB90363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-21]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|419418043|ref|ZP_13958407.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori NCTC 11637 = CCUG 17874]
gi|384374916|gb|EIE30267.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori NCTC 11637 = CCUG 17874]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|355676849|ref|ZP_09060345.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
citroniae WAL-17108]
gi|354813438|gb|EHE98049.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
citroniae WAL-17108]
Length = 439
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ +R + +GF
Sbjct: 213 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIVEQRLSAGSIGFN 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E + ++ DL L++VE +DL FG+IPEF+GR P+
Sbjct: 273 A---EVVNKNDMNIDDL-------------------LRKVEPKDLTKFGLIPEFIGRVPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L ++ +VRIL+EPKNA+ +QYQ LF +D V L F+ EAL+ IA+LA+++K GAR
Sbjct: 311 MVSLQQLTKDAMVRILSEPKNALTRQYQKLFELDNVKLEFTREALEEIAQLAVDRKIGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLR+I+ES+++D MYE+P D + + IT + V K P +
Sbjct: 371 GLRSILESVMMDLMYEIPSDDTIGICTITREVVKKTGQPELV 412
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQSADYDISRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 217 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 249
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
>gi|385219609|ref|YP_005781084.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Gambia94/24]
gi|420446308|ref|ZP_14945208.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-42]
gi|420501854|ref|ZP_15000395.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-41]
gi|317014767|gb|ADU82203.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori Gambia94/24]
gi|393059290|gb|EJB60172.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-42]
gi|393153134|gb|EJC53427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-41]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420412754|ref|ZP_14911881.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4228]
gi|420417698|ref|ZP_14916794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4044]
gi|420419502|ref|ZP_14918592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4076]
gi|393026572|gb|EJB27671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4228]
gi|393031408|gb|EJB32480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4076]
gi|393032007|gb|EJB33077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori NQ4044]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420140224|ref|ZP_14647995.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa CIG1]
gi|403246963|gb|EJY60648.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
aeruginosa CIG1]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+R+I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E K+ K+VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+AR ALE+KTGAR
Sbjct: 312 IATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 372 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|421718951|ref|ZP_16158245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R038b]
gi|407218826|gb|EKE88645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori R038b]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|420505803|ref|ZP_15004319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-74]
gi|393117335|gb|EJC17839.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-74]
Length = 446
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|420489933|ref|ZP_14988519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-13]
gi|420523774|ref|ZP_15022185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-13b]
gi|393109276|gb|EJC09807.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-13]
gi|393134305|gb|EJC34719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-13b]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420456183|ref|ZP_14955005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-16]
gi|393076281|gb|EJB77034.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp A-16]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|339639091|emb|CCC18310.1| ATP-dependent Clp protease ATP-binding subunit Cl pX [Lactobacillus
pentosus IG1]
Length = 422
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ RR +K +GFG
Sbjct: 214 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEDIVKRRLGDKTIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
T++ G+ A +D+K + ++QV DL+ FG+IPEF+GR PI
Sbjct: 274 ---TDTDGKNAVL--------------DDSK---SLMQQVVPEDLLQFGLIPEFIGRLPI 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LVRILTEPKNA+++QYQ L +D +L F+ +AL+AIA+ AL + TGAR
Sbjct: 314 LTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAIAQEALARNTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E + D MY++P D+ V IT +TV + P +
Sbjct: 374 GLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADHAEPELV 415
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 158 GEDVENILLKLLQNADYDVERAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 217
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 218 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 249
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 217
>gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
DK 1622]
gi|8134368|sp|Q9X5N1.1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus
DZF1]
gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
xanthus DK 1622]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GLD++I RR + LGFG
Sbjct: 212 LLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ SL +L LK VE DL+ FGMIPEF+GR PI
Sbjct: 272 A---DVQSKKQRSLTEL-------------------LKHVEPEDLLKFGMIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ IL +PKNA+ +QY+ LF +D V L F+ AL+AIA A+ +K GAR
Sbjct: 310 ITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKAGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
GLR+I+ES +LD MYE+P V I+E+ +LK + P
Sbjct: 370 GLRSILESAMLDVMYEIPSRKTAREVLISEEVILKKSEP 408
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKL 215
>gi|420434655|ref|ZP_14933657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24]
gi|420506860|ref|ZP_15005373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24b]
gi|420508555|ref|ZP_15007057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24c]
gi|420533802|ref|ZP_15032160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M1]
gi|420535528|ref|ZP_15033872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M2]
gi|420537180|ref|ZP_15035515.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M3]
gi|420538923|ref|ZP_15037246.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M4]
gi|420540561|ref|ZP_15038876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M5]
gi|420542285|ref|ZP_15040590.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M6]
gi|420543788|ref|ZP_15042078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M9]
gi|393048175|gb|EJB49143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24]
gi|393118941|gb|EJC19432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24b]
gi|393119981|gb|EJC20470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-24c]
gi|393136809|gb|EJC37199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M1]
gi|393139420|gb|EJC39796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M2]
gi|393141157|gb|EJC41523.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M3]
gi|393142037|gb|EJC42393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M4]
gi|393144441|gb|EJC44779.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M5]
gi|393144530|gb|EJC44863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M6]
gi|393159153|gb|EJC59408.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp M9]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|420435214|ref|ZP_14934214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-27]
gi|393052982|gb|EJB53928.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-27]
Length = 446
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 241 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 299
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 300 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 336
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 337 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 396
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 397 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 437
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 206 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 262
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 263 GNFIQIDTSDILFIC 277
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 208 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 244
>gi|395239296|ref|ZP_10417178.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394476534|emb|CCI87155.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 421
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 139/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIRMDTTNILFIVGGAFDGIEEIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + SL D K + +L DL+ FGMIPEF+GR P+
Sbjct: 268 AEN------EINSL--------------DTKNWNQYLT---TGDLVKFGMIPEFIGRIPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + L+RILTEPKNA+++QYQ L ++D V LTF+ EAL AIA LA+E+ GAR
Sbjct: 305 ITTLDKLDNDDLMRILTEPKNALVKQYQKLLSLDNVKLTFTDEALNAIADLAIERNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ L+D MY+ P DIL V +T+D +L + P IR
Sbjct: 365 GLRTIIENALMDIMYQTPSDEDILEVKVTDDVILHHAQPIVIR 407
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDIDRAQRGIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIRMDTTNILFI 243
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKI 211
>gi|378824293|ref|ZP_09846806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sutterella
parvirubra YIT 11816]
gi|378596864|gb|EHY30239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sutterella
parvirubra YIT 11816]
Length = 432
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 135/216 (62%), Gaps = 23/216 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ P + +MV+ DTT ILF+ GA++G++R++ + + +GF
Sbjct: 229 LLKLIEGTVARFPASGGRKNPTAQMVEADTTQILFICGGAFDGMERILREKNAKSTIGF- 287
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ +V +++ + +D F + VEA D + FG+IPE VGR P+
Sbjct: 288 --------------------NGSVHGKKEREREDLF-RDVEASDFVKFGLIPELVGRLPV 326
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVRILTEPKNA+++QYQ LF M+ V+L F PEAL+A+AR A+E+KTGAR
Sbjct: 327 ITSLDKLDEDTLVRILTEPKNAVVRQYQALFEMEGVELEFEPEALRAVARRAIERKTGAR 386
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKN 234
GLR I+E LL+D+M+E+P D+ V +T D V K
Sbjct: 387 GLRGILEELLVDTMFEIPDLKDVAKVVVTADAVEKK 422
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTG 330
A GI++LDE+DKI P I RDV GEGVQQ +LK+ + R+P +G
Sbjct: 194 AERGIIYLDEIDKIARKSENPSI--TRDVSGEGVQQALLKLIEGTV-ARFPASG 244
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI++LDE+DKI P I RDV GEGVQQ +LK+
Sbjct: 196 RGIIYLDEIDKIARKSENPSI--TRDVSGEGVQQALLKL 232
>gi|227893377|ref|ZP_04011182.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
ultunensis DSM 16047]
gi|227864792|gb|EEJ72213.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
ultunensis DSM 16047]
Length = 432
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 145/236 (61%), Gaps = 24/236 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 217 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 276
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A N+ + V A D + + + DL+ FGMIPEF+GR PI
Sbjct: 277 AE----------------NEVSKVDA-------DDWTRHLTTADLVKFGMIPEFIGRIPI 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 314 ITTLDKLDSKDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLR I+E+ ++D MYE P DI V +T+D + ++ P IR +E ++ A
Sbjct: 374 GLRTIIENSIMDIMYETPSEEDIEAVEVTKDVITRHAKPRVIRKKTEENEKSQVSA 429
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 161 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 220
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 221 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 252
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 184 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 220
>gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
gi|149752861|gb|EDM62792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dorea
longicatena DSM 13814]
Length = 419
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + EM+Q+DTTNILF+ GA+ G+++++ +R ++K +GF
Sbjct: 211 LLKIIEGTVANVPPQGGRKHPHQEMIQIDTTNILFICGGAFEGIEKIVEKRIDQKSIGFN 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AE+ + D L+Q+ +DL+ FG+IPE VGR P+
Sbjct: 271 AEI----------------------AEKHEDDVDRLLQQILPQDLVKFGLIPELVGRVPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ LV+ILTEPKNA+ +QYQ + +D V LTF +AL+ IA +L++KTGAR
Sbjct: 309 TVALEMLDKDALVKILTEPKNALTKQYQKMLELDGVKLTFDKKALETIAETSLKRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAP 237
GLRAIME++++D MY+ P + L ITED V P
Sbjct: 369 GLRAIMENIMMDIMYKAPSDETLKTCRITEDVVKGTGEP 407
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A +GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENILLKIIQAADGDIERAEYGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ I N +I
Sbjct: 213 KIIEGTVANVPPQGG---RKHPHQEMIQIDTTNILFIC 247
>gi|420486467|ref|ZP_14985081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4]
gi|420516982|ref|ZP_15015439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4c]
gi|420518683|ref|ZP_15017130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4d]
gi|393100392|gb|EJC00969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4]
gi|393120932|gb|EJC21419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4d]
gi|393121000|gb|EJC21485.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp P-4c]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 247 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 305
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 306 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 342
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 343 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 402
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 403 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 443
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 212 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 268
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 269 GNFIQIDTSDILFIC 283
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 214 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 250
>gi|308271900|emb|CBX28508.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
Desulfobacterium sp.]
Length = 414
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP K + + + V+VDT NILF+ G +NGLD++I +R K +GFG
Sbjct: 207 LLKIIEGTTASVPPKGGRKHPQQDFVKVDTMNILFICGGTFNGLDQIIQKRFGSKSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +S +E NK K LK V+ DLI FG+IPEF+GR P+
Sbjct: 267 A---------------------KISGKE-NKSKSELLKLVQPEDLIKFGLIPEFLGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+RILTEPKNA+I Q++ LF M+ ++L F+ AL AIA+ A ++K+GAR
Sbjct: 305 VASLDELSEETLIRILTEPKNALINQFKKLFEMEGINLRFTDSALSAIAKEAQKRKSGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRA++ES LLD MYE+P ++ I+ED + P
Sbjct: 365 GLRAVLESCLLDIMYEIPSIKNVKECVISEDVINNKEEP 403
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI A P I RDV GEGVQQ +LK+
Sbjct: 174 RGIVYIDEIDKIAAKSENPSIT--RDVSGEGVQQALLKI 210
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 283 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNT 339
GIV++DE+DKI A P I RDV GEGVQQ +LK+ P G ++P
Sbjct: 175 GIVYIDEIDKIAAKSENPSIT--RDVSGEGVQQALLKIIEGTTASVPPKGG---RKHPQQ 229
Query: 340 GYIWYRYPNTGYIW 353
++ N +I
Sbjct: 230 DFVKVDTMNILFIC 243
>gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella
bacilliformis KC583]
gi|421760664|ref|ZP_16197479.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella
bacilliformis INS]
gi|166214756|sp|A1USA8.1|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
bacilliformis KC583]
gi|411174753|gb|EKS44783.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella
bacilliformis INS]
Length = 424
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R + +GF
Sbjct: 212 LLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTSIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA + A ++ + + F +E DL+ FG+IPEF+GR PI
Sbjct: 271 --------------------SATIKAPDERRVGEIF-HDLEPEDLVKFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LVRIL++PKNA+++QYQ LF M+ V+LTF +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDIDALVRILSQPKNALVKQYQHLFEMENVELTFHEDALRAIANKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 370 GLRSIMEKILLDTMFELPALEGVQKVVISSDVVEGKARPLYI 411
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTIASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALLKI 215
>gi|400754135|ref|YP_006562503.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phaeobacter
gallaeciensis 2.10]
gi|398653288|gb|AFO87258.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phaeobacter
gallaeciensis 2.10]
Length = 422
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I +R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ + S A E K +E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVRDDSDAGVGE--------TFKDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+ ILT+PKNA+++QYQ LF ++ +L F+ EAL +IA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LLD+M+E+PG D + V + E+ V + P I
Sbjct: 369 GLRSILEDILLDTMFELPGMDSVEKVVVNEEAVNSDAQPLMIHA 412
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|339498008|ref|ZP_08658984.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 415
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 137/220 (62%), Gaps = 22/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTI +VP + + + E++QVDTTNILF+ GA+ G+D +I R E+ +GFG
Sbjct: 210 LLKMLEGTIASVPPQGGRKHPQQELIQVDTTNILFIVGGAFAGIDTIIKERLGERVIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E+A V+ ++N L+ V+ D+ FG+IPEF+GR PI
Sbjct: 270 SDANENA----------------VALNDEN-----ILRHVQPEDMTKFGLIPEFIGRLPI 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L L RILTEPKNA+I+QY L +D V+L F P+AL+A+A LA+++ TGAR
Sbjct: 309 VTVLDELKVADLARILTEPKNALIKQYTALLGLDDVELEFQPDALEAMAELAIKRHTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLR+I+E+++ D MY++P D+ V ITE +V K P
Sbjct: 369 GLRSIIENVMKDVMYDIPSRDDVAKVIITEASVEKGEQPE 408
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENIILKLLQAADFNVEAAEHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKM 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 214 LEGTIASVPPQGG---RKHPQQELIQVDTTNILFI 245
>gi|147677140|ref|YP_001211355.1| ATP-dependent protease ATP-binding subunit ClpX [Pelotomaculum
thermopropionicum SI]
gi|146273237|dbj|BAF58986.1| ATP-dependent protease Clp, ATPase subunit [Pelotomaculum
thermopropionicum SI]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 216 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIMNRIGKKAMGFG 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ + ++ L ++ DL+ +G+IPEFVGR PI
Sbjct: 276 A---EIKARKELKIGEI-------------------LSKILPEDLLKYGLIPEFVGRLPI 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L+RILTEP+NA+++QY+ LF +D V L F+ +AL+A+A AL++ TGAR
Sbjct: 314 IVTLDALDEEALIRILTEPRNALVKQYEKLFELDGVTLEFTQDALKAVAEEALKRNTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MY++P SD+ +T +T+L+ P I
Sbjct: 374 GLRAILEEVMLDVMYDIPSRSDVAKCIVTRETILRREPPRII 415
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 160 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 217
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 218 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 252
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 183 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 219
>gi|210135559|ref|YP_002301998.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
pylori P12]
gi|210133527|gb|ACJ08518.1| ATP-dependent clp protease ClpX [Helicobacter pylori P12]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|425433164|ref|ZP_18813701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori GAM100Ai]
gi|410714209|gb|EKQ71689.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori GAM100Ai]
Length = 410
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 205 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 263
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 264 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 301 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 360
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 361 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 401
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 170 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 226
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 227 GNFIQIDTSDILFIC 241
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 172 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 208
>gi|255321157|ref|ZP_05362323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens SK82]
gi|421855045|ref|ZP_16287427.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|255301711|gb|EET80962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens SK82]
gi|403189545|dbj|GAB73628.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 438
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 141/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT+N+LF+ GA++GL++++ R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTSNVLFICGGAFSGLEKIVQHRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVKSKDETKKLAELFRQVEPADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 310 IATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRAVAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 370 GLRSILENVLLETMYDLPSRNDVGTVVINEAVINDGAEPEY 410
>gi|312898488|ref|ZP_07757878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
micronuciformis F0359]
gi|310620407|gb|EFQ03977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
micronuciformis F0359]
Length = 417
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 139/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT NVP + + EM+Q+DTTNILF+ GA++G+D+ I R+ EK +GFG
Sbjct: 212 LLKILEGTEANVPPQGGRKHPHQEMLQIDTTNILFICGGAFDGIDKTIRSRRTEKNMGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ S EE LK++ DL FG+IPE +GR P+
Sbjct: 272 A--------------DIHKKNEE-SVEE-------LLKEIIPTDLQKFGLIPELIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV + L++E ++ ILTEPKNA+++QYQ + MD V LTF+ +AL+AIA AL +KTGAR
Sbjct: 310 LVTLNPLDEEAMIHILTEPKNALVKQYQKMLGMDDVKLTFTDDALKAIAEEALRRKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E ++LD M++ P D+ +T+++V+ AP
Sbjct: 370 GLRSIIERIMLDVMFDAPSRKDVEECIVTKESVVDGKAP 408
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENCLLKLIQAADFDIAKAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P+ + N +I
Sbjct: 214 KILEGTEANVPPQGG---RKHPHQEMLQIDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 215
>gi|302869358|ref|YP_003837995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Micromonospora aurantiaca ATCC 27029]
gi|315504167|ref|YP_004083054.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Micromonospora sp. L5]
gi|302572217|gb|ADL48419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Micromonospora aurantiaca ATCC 27029]
gi|315410786|gb|ADU08903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Micromonospora sp. L5]
Length = 430
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLD++I R GFG
Sbjct: 214 LLKMLEGTVANVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGSGGTGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R S+++ + D QV D++ FG+IPEF+GR P+
Sbjct: 274 A--------RLRSVSE--------------RSTDDIFSQVMPEDMLKFGLIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++ LVRILTEP+NA+++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 312 ITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAIADQAMLRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP + D V IT + VL+N P+ +
Sbjct: 372 GLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENVNPTIV 413
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 216 KMLEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFIC 250
>gi|238855232|ref|ZP_04645551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii 269-3]
gi|260664593|ref|ZP_05865445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii SJ-7A-US]
gi|313471945|ref|ZP_07812437.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii 1153]
gi|238832124|gb|EEQ24442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii 269-3]
gi|239529127|gb|EEQ68128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii 1153]
gi|260561658|gb|EEX27630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
jensenii SJ-7A-US]
Length = 427
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 141/229 (61%), Gaps = 22/229 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + E++++DT NILF+ GA++G++ ++ R +K +GFG
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQELIKIDTKNILFIVGGAFDGIESIVKSRLGKKTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S D +Q A D++ K + DL+ FG+IPEF+GR P+
Sbjct: 269 AESK----------FDDVDQDA-----------DSWNKYLTTGDLVKFGLIPEFIGRIPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L + L+RILTEPKNA+++QYQ LF++DKVDL FS AL+AI+ ALE+ GAR
Sbjct: 308 ISTLDKLQKADLIRILTEPKNALVKQYQKLFSIDKVDLHFSDGALEAISEQALERNMGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYIRGIVFLD 247
GLR I+E+ ++D+MY +P D+ V IT D + K+ +P R V D
Sbjct: 368 GLRTIIENAMMDTMYTIPSEQDVAKVEITRDVITKHASPRITRKEVNKD 416
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENILLKLIQNADYDIERAQRGIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 213 LEGTIASVPPQGG---RKHPQQELIKIDTKNILFI 244
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKI 212
>gi|397676239|ref|YP_006517777.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zymomonas
mobilis subsp. mobilis ATCC 29191]
gi|395396928|gb|AFN56255.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zymomonas
mobilis subsp. mobilis ATCC 29191]
Length = 422
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLDR+I+ R K +GFG
Sbjct: 210 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIADRLEGKSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L++ E DL+ FG+IPEFVGR P+
Sbjct: 270 AHVAAPDERRTGEI----------------------LQECEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+Q LVRILTEPKNA+++QYQ LF ++ L F+ EAL AIA+ +E+KTGAR
Sbjct: 308 LATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEEALAAIAKKGIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E +LLD+M+E+P
Sbjct: 368 GLRSILEGILLDTMFELP 385
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 175 AQRGIVYIDEIDKITRKSDNPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKITRKSDNPSI--TRDVSGEGVQQALLKL 213
>gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 4 str. 40]
gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
bv. 4 str. 40]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA +E KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKVVEHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|399888211|ref|ZP_10774088.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
arbusti SL206]
Length = 448
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 28/221 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q++TTN+LF+ GA++G+D++I RR + +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPHQEFIQINTTNVLFICGGAFDGVDKIIERRTRKSSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A + KEKD LK + DL+ FG+IPEFVGR
Sbjct: 267 ADV------------------------QSKKEKDMGILLKDIMPGDLLKFGLIPEFVGRL 302
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PILV +L+++ L+ IL++PKNA+++QY+ LF MD VDL+F AL+AIA+ A+ + TG
Sbjct: 303 PILVTLDALDEKALIEILSKPKNALVKQYKKLFQMDSVDLSFKEAALKAIAKEAINRNTG 362
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
ARGLRAI+E ++ D M+++P DI V ITE+T LK+ P
Sbjct: 363 ARGLRAIIEDMMKDIMFDIPSRQDIKKVSITEET-LKSKKP 402
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQNADYDVERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVASVPPQGG---RKHPHQEFIQINTTNVLFIC 243
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>gi|372488838|ref|YP_005028403.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Dechlorosoma
suillum PS]
gi|359355391|gb|AEV26562.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Dechlorosoma
suillum PS]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 132/222 (59%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + VQVDT NILF+ GA++GL+++I R +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPNQDFVQVDTANILFICGGAFDGLEKVIRNRSTRGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++ED K L+ VE DLI FG+IPEFVGR P+
Sbjct: 273 A---------------------EVKSKEDKKAVGEVLRTVEPEDLIKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV IL EPKNA+I+QYQ LF M+ +L P AL AIAR ALE+KTGAR
Sbjct: 312 IATLDELSEAALVEILIEPKNALIKQYQKLFAMEGAELEVRPAALTAIARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LL++MYE+PG D + V I E + P I
Sbjct: 372 GLRSILEGVLLETMYELPGMDNVSKVVIDEGMISGEAKPILI 413
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQQGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
PN ++ N +I
Sbjct: 233 PNQDFVQVDTANILFIC 249
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 216
>gi|456390727|gb|EMF56122.1| clpX protein [Streptomyces bottropensis ATCC 25435]
Length = 428
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-EAVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V I D V N P+ I
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVINADVVRSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|378951823|ref|YP_005209311.1| protein ClpX [Pseudomonas fluorescens F113]
gi|359761837|gb|AEV63916.1| ClpX [Pseudomonas fluorescens F113]
Length = 427
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|385814048|ref|YP_005850441.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus
H10]
gi|323466767|gb|ADX70454.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus
H10]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 140/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------DVDKIDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ E LVR+LTEPKNA+++QY+ L ++D +DL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGIDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MY+ P DI V +T+D ++++ P IR
Sbjct: 365 GLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVIIRHAEPKVIR 407
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKIDTTNILFI 243
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|326790231|ref|YP_004308052.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
lentocellum DSM 5427]
gi|326540995|gb|ADZ82854.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
lentocellum DSM 5427]
Length = 428
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 140/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E +Q+DTTNILF+ GA++GLD++I RR +K +GFG
Sbjct: 209 LLKIIEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLDKIIERRVGQKSMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ S+ +L KQ+E +DL+ FG+IPEFVGR P
Sbjct: 269 A---NIVSKKEKSIGEL-------------------FKQIEPQDLVKFGLIPEFVGRIPS 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V ++L++E L++ILTEPKNA+ +QY+ LF +D + L F EAL A+A LA+E++TGAR
Sbjct: 307 IVSLNNLDKEALIKILTEPKNALTKQYEHLFELDGIKLEFEEEALVAVAELAIERETGAR 366
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSYI 240
GLRAI E+++ + MY+ P G + + I D + + P+ +
Sbjct: 367 GLRAIFETMMRNIMYDAPSMGDALEKIIIHADVIKEGKEPTLV 409
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 254 AVPGIHQLRDVG--GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQ 301
AV L + G GE V+ +LK+ A + GI+++DE+DKI P I
Sbjct: 139 AVADATSLTEAGYVGEDVENILLKLIQAANYDVEKAQLGIIYIDEIDKISRKSENPSI-- 196
Query: 302 LRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
RDV GEGVQQ +LK+ + P G ++P+ +I N +I
Sbjct: 197 TRDVSGEGVQQALLKIIEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 GIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKI 212
>gi|421662138|ref|ZP_16102306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC110]
gi|421693925|ref|ZP_16133557.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-692]
gi|404569764|gb|EKA74849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-692]
gi|408714941|gb|EKL60071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC110]
Length = 437
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|423096201|ref|ZP_17083997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens Q2-87]
gi|423696405|ref|ZP_17670895.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens Q8r1-96]
gi|388003112|gb|EIK64439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens Q8r1-96]
gi|397884545|gb|EJL01028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
fluorescens Q2-87]
Length = 427
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|421620750|ref|ZP_16061679.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC074]
gi|408700027|gb|EKL45499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC074]
Length = 437
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|254556941|ref|YP_003063358.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
plantarum JDM1]
gi|300768256|ref|ZP_07078161.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180930|ref|YP_003925058.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|380032875|ref|YP_004889866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
plantarum WCFS1]
gi|418275671|ref|ZP_12890994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448821642|ref|YP_007414804.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
plantarum ZJ316]
gi|38257506|sp|Q88VE2.1|CLPX_LACPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|254045868|gb|ACT62661.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
JDM1]
gi|300494320|gb|EFK29483.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308046421|gb|ADN98964.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|342242118|emb|CCC79352.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
plantarum WCFS1]
gi|376009222|gb|EHS82551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448275139|gb|AGE39658.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
plantarum ZJ316]
Length = 421
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ RR +K +GFG
Sbjct: 213 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEDIVKRRLGDKTIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
T++ G+ A +D+K + ++QV DL+ FG+IPEF+GR PI
Sbjct: 273 ---TDTDGKNAVL--------------DDSK---SLMQQVVPEDLLQFGLIPEFIGRLPI 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LVRILTEPKNA+++QYQ L +D +L F+ +AL+AIA+ AL + TGAR
Sbjct: 313 LTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAIAQEALARNTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E + D MY++P D+ V IT +TV + P +
Sbjct: 373 GLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADHAEPELV 414
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLLQNADYDVERAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 248
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 180 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
>gi|430375835|ref|ZP_19430238.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella macacae
0408225]
gi|429541066|gb|ELA09094.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella macacae
0408225]
Length = 428
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI NVP + + EM+QVDT+NIL + GA+ GLD++I +R + +GF
Sbjct: 226 LLKLIEGTITNVPPQGGRKHPNQEMIQVDTSNILVICGGAFAGLDKVIQQRTEKTGIGF- 284
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A++ +K+ KQVE DLI FG+IPE +GR P+
Sbjct: 285 --------------------NADVKAKDSSKKIGELFKQVEPEDLIKFGLIPELIGRLPV 324
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+++QY+ LF M+ L FS EAL AIA+ AL++ TGAR
Sbjct: 325 VATLEELDEESLIQILTEPKNALVKQYEYLFNMENAKLEFSQEALIAIAKQALKRNTGAR 384
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ LLD+MYE+P + V I E + N P
Sbjct: 385 GLRSIVENALLDTMYELPSMTGQKTVKIDESVINDNQTP 423
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 211 DSMYEVPGSDILMVHITED--TVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVG--G 266
D+M E+ S+IL++ T T+L T I D A+ L + G G
Sbjct: 120 DAMIELSKSNILLIGPTGSGKTLLAQTLARLI---------DVPFAIADATTLTEAGYVG 170
Query: 267 EGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV-PGIHQLRDVGGEGVQQGMLKVS 318
E V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 171 EDVENIVLKLLQSADYDIEKTQKGIIYIDEIDKISRKGENVSITRDVSGEGVQQALLKLI 230
Query: 319 TSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++PN I N
Sbjct: 231 EGTITNVPPQGG---RKHPNQEMIQVDTSN 257
>gi|330808573|ref|YP_004353035.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376681|gb|AEA68031.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 427
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|341820109|emb|CCC56341.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Weissella
thailandensis fsh4-2]
Length = 415
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ +VP + + E +QVDTTNILF+ GA+ G+++++ R K +GFG
Sbjct: 213 LLKMLEGTVASVPPQGGRKHPNQEFIQVDTTNILFIVGGAFAGIEQMVKERLGAKVIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A L N +V ++QV DL++FG+IPEF+GR PI
Sbjct: 273 TD---------AKTQQLQNSDKSV------------MQQVLPEDLMNFGLIPEFIGRLPI 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L + LVRILTEPKNA+++QYQ L ++ VDL F+ +AL+A+A LA+E++TGAR
Sbjct: 312 LTALEELTESDLVRILTEPKNALVKQYQALLALEDVDLKFTDDALKAMAHLAIERETGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M++VP ++ V ITE VL+ P +
Sbjct: 372 GLRSIVEEVMRDVMFDVPSREEVTGVVITEGAVLRQEEPELV 413
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLVQAADYDVERAETGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 217 LEGTVASVPPQGG---RKHPNQEFIQVDTTNILFI 248
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKM 216
>gi|403515256|ref|YP_006656076.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
helveticus R0052]
gi|403080694|gb|AFR22272.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
helveticus R0052]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 139/223 (62%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + E D + D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------EVDKIDADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ E LVR+LTEPKNA+++QY+ L ++D VDL F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MY+ P DI V +T+D + ++ P IR
Sbjct: 365 GLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVITRHAEPKVIR 407
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 243
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
phototrophica DFL-43]
gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
phototrophica DFL-43]
Length = 426
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILFV GA+ GLD++IS R + +GF
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFVCGGAFAGLDKIISDRGEKTSIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA+V A+ D + L+ +E DL+ FG+IPEF+GR P+
Sbjct: 272 --------------------SASVRAQ-DERRVGEVLRALEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ V+LTF ALQ IA+ + + TGAR
Sbjct: 311 LATLEDLDESALIQILTEPKNALVKQYQRLFEMEDVELTFHESALQEIAKRGIIRATGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+++ V N P YI
Sbjct: 371 GLRSIMEKILLDTMFELPALEGVREVVISDEVVNGNARPLYI 412
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N ++
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFVC 249
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|126733144|ref|ZP_01748891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
sp. CCS2]
gi|126716010|gb|EBA12874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
sp. CCS2]
Length = 421
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E +D++ +E DL+ FG+IPEFVGR P+
Sbjct: 269 ADVRE----------------------DDDRGIGEIFTDLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILT+PKNA+++QYQ LF ++ LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 307 IATLTDLDEDALITILTKPKNALVKQYQRLFDLEDTKLTFTEDALAAIAKRAIERKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG D + V + E+ V AP I
Sbjct: 367 GLRSIMEDILLDTMFDLPGMDTVTEVVVNEEAVNSEVAPLMI 408
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|169634425|ref|YP_001708161.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii SDF]
gi|169797266|ref|YP_001715059.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AYE]
gi|184156808|ref|YP_001845147.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ACICU]
gi|213155940|ref|YP_002317985.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB0057]
gi|215484707|ref|YP_002326942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii AB307-0294]
gi|239500789|ref|ZP_04660099.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB900]
gi|260556148|ref|ZP_05828367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301346761|ref|ZP_07227502.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB056]
gi|301512253|ref|ZP_07237490.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB058]
gi|301594242|ref|ZP_07239250.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB059]
gi|332851227|ref|ZP_08433300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6013150]
gi|332866081|ref|ZP_08436809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6013113]
gi|332873221|ref|ZP_08441178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6014059]
gi|384130480|ref|YP_005513092.1| clpX [Acinetobacter baumannii 1656-2]
gi|384141765|ref|YP_005524475.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii MDR-ZJ06]
gi|385236077|ref|YP_005797416.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii TCDC-AB0715]
gi|387125277|ref|YP_006291159.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Acinetobacter baumannii MDR-TJ]
gi|403673395|ref|ZP_10935692.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
NCTC 10304]
gi|407931413|ref|YP_006847056.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Acinetobacter baumannii TYTH-1]
gi|416146585|ref|ZP_11601248.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB210]
gi|417548860|ref|ZP_12199941.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-18]
gi|417554476|ref|ZP_12205545.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-81]
gi|417559835|ref|ZP_12210714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC137]
gi|417566510|ref|ZP_12217382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC143]
gi|417570410|ref|ZP_12221267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC189]
gi|417571823|ref|ZP_12222677.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Canada BC-5]
gi|417577372|ref|ZP_12228217.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-17]
gi|417871121|ref|ZP_12516064.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH1]
gi|417875783|ref|ZP_12520587.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH2]
gi|417879719|ref|ZP_12524275.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH3]
gi|417882117|ref|ZP_12526425.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH4]
gi|421201042|ref|ZP_15658201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC109]
gi|421202631|ref|ZP_15659779.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AC12]
gi|421454197|ref|ZP_15903546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-123]
gi|421533665|ref|ZP_15979946.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AC30]
gi|421625769|ref|ZP_16066615.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC098]
gi|421630631|ref|ZP_16071332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC180]
gi|421634255|ref|ZP_16074874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-13]
gi|421642783|ref|ZP_16083294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-235]
gi|421649346|ref|ZP_16089741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-251]
gi|421650920|ref|ZP_16091292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC0162]
gi|421655156|ref|ZP_16095480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-72]
gi|421659274|ref|ZP_16099495.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-83]
gi|421675826|ref|ZP_16115745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC065]
gi|421677460|ref|ZP_16117352.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC111]
gi|421688455|ref|ZP_16128155.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-143]
gi|421692612|ref|ZP_16132263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-116]
gi|421698050|ref|ZP_16137594.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-58]
gi|421702212|ref|ZP_16141697.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ZWS1122]
gi|421705951|ref|ZP_16145372.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ZWS1219]
gi|421789232|ref|ZP_16225494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-82]
gi|421792386|ref|ZP_16228541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-2]
gi|421798248|ref|ZP_16234273.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-21]
gi|421798785|ref|ZP_16234796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Canada BC1]
gi|421805852|ref|ZP_16241728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-A-694]
gi|421807882|ref|ZP_16243739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC035]
gi|424053764|ref|ZP_17791295.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab11111]
gi|424061208|ref|ZP_17798698.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab33333]
gi|424064699|ref|ZP_17802183.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab44444]
gi|425749276|ref|ZP_18867256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-348]
gi|425751578|ref|ZP_18869523.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-113]
gi|445400104|ref|ZP_21429754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-57]
gi|445446824|ref|ZP_21443455.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-A-92]
gi|445465207|ref|ZP_21449985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC338]
gi|445481642|ref|ZP_21456086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-78]
gi|445486129|ref|ZP_21457187.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii AA-014]
gi|226706570|sp|B7H092.1|CLPX_ACIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|226706571|sp|B7I5E4.1|CLPX_ACIB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238685491|sp|A3M1Y8.2|CLPX_ACIBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238688025|sp|B0V4T7.1|CLPX_ACIBY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238688111|sp|B0VKU4.1|CLPX_ACIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238691033|sp|B2I3C2.1|CLPX_ACIBC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|169150193|emb|CAM88087.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
baumannii AYE]
gi|169153217|emb|CAP02313.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
baumannii]
gi|183208402|gb|ACC55800.1| ATP-dependent protease Clp, ATPase subunit [Acinetobacter baumannii
ACICU]
gi|193076290|gb|ABO10932.2| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
baumannii ATCC 17978]
gi|213055100|gb|ACJ40002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii AB0057]
gi|213988694|gb|ACJ58993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii AB307-0294]
gi|260410203|gb|EEX03502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|322506700|gb|ADX02154.1| clpX [Acinetobacter baumannii 1656-2]
gi|323516574|gb|ADX90955.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii TCDC-AB0715]
gi|332730107|gb|EGJ61434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6013150]
gi|332734827|gb|EGJ65920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6013113]
gi|332738733|gb|EGJ69603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii 6014059]
gi|333365966|gb|EGK47980.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AB210]
gi|342224855|gb|EGT89870.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH2]
gi|342225942|gb|EGT90918.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH1]
gi|342227605|gb|EGT92524.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH3]
gi|342238366|gb|EGU02799.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ABNIH4]
gi|347592258|gb|AEP04979.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii MDR-ZJ06]
gi|385879769|gb|AFI96864.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Acinetobacter baumannii MDR-TJ]
gi|395522417|gb|EJG10506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC137]
gi|395550858|gb|EJG16867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC189]
gi|395552182|gb|EJG18190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC143]
gi|395563074|gb|EJG24727.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC109]
gi|395570593|gb|EJG31255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-17]
gi|398328014|gb|EJN44144.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AC12]
gi|400207391|gb|EJO38361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Canada BC-5]
gi|400212964|gb|EJO43921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-123]
gi|400389159|gb|EJP52231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-18]
gi|400390893|gb|EJP57940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-81]
gi|404559898|gb|EKA65149.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-116]
gi|404561198|gb|EKA66434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-143]
gi|404573096|gb|EKA78136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-58]
gi|404666890|gb|EKB34820.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab33333]
gi|404667250|gb|EKB35171.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab11111]
gi|404672782|gb|EKB40586.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acinetobacter
baumannii Ab44444]
gi|407194975|gb|EKE66111.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ZWS1122]
gi|407195364|gb|EKE66498.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ZWS1219]
gi|407899994|gb|AFU36825.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Acinetobacter baumannii TYTH-1]
gi|408508932|gb|EKK10608.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC0162]
gi|408509293|gb|EKK10968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-72]
gi|408511349|gb|EKK12997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-235]
gi|408514119|gb|EKK15731.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii IS-251]
gi|408697017|gb|EKL42537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC180]
gi|408697863|gb|EKL43369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC098]
gi|408704973|gb|EKL50329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-13]
gi|408707985|gb|EKL53263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-83]
gi|409988337|gb|EKO44509.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii AC30]
gi|410381343|gb|EKP33909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC065]
gi|410393216|gb|EKP45570.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC111]
gi|410394834|gb|EKP47158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-21]
gi|410399162|gb|EKP51359.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-82]
gi|410400693|gb|EKP52861.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-2]
gi|410408114|gb|EKP60089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-A-694]
gi|410411434|gb|EKP63305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Canada BC1]
gi|410416061|gb|EKP67836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC035]
gi|425489349|gb|EKU55661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-348]
gi|425500025|gb|EKU66053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-113]
gi|444759766|gb|ELW84228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii WC-A-92]
gi|444769614|gb|ELW93782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii AA-014]
gi|444770434|gb|ELW94591.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-78]
gi|444779339|gb|ELX03333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC338]
gi|444783486|gb|ELX07345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii Naval-57]
gi|452955760|gb|EME61157.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii MSP4-16]
Length = 437
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|417545335|ref|ZP_12196421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC032]
gi|421666371|ref|ZP_16106463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC087]
gi|421671117|ref|ZP_16111099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC099]
gi|400383223|gb|EJP41901.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC032]
gi|410383414|gb|EKP35947.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC099]
gi|410388296|gb|EKP40735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC087]
Length = 437
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
83/13]
gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
NF 2653]
gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
83/13]
gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
NF 2653]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+ +KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVVRKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|402591886|gb|EJW85815.1| ATP-dependent protease ATP-binding subunit ClpX [Wuchereria
bancrofti]
Length = 330
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 135/214 (63%), Gaps = 18/214 (8%)
Query: 21 LCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGA 80
L ++EGT V V + S G V VDTTNILF+ASGA+N LDR+IS+R ++K +GF
Sbjct: 110 LKLVEGTAVKVKQPGS----NGTRVDVDTTNILFIASGAFNNLDRIISQRLHKKLVGFST 165
Query: 81 PSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPIL 140
+ + + + +K +D L+QVE DLI FGM+PE +GRFP+L
Sbjct: 166 GKDKEKYEKDET--------------KISKHRDDLLRQVEHVDLIKFGMLPELIGRFPVL 211
Query: 141 VPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARG 200
VPF SL +ELLVRI+ EPK++++ Q + F +D + L F+ AL+ IAR A +K TGAR
Sbjct: 212 VPFTSLTEELLVRIMKEPKSSIVSQAKKQFLLDNIQLCFTDCALKEIARTAAQKGTGARA 271
Query: 201 LRAIMESLLLDSMYEVPGSDILMVHITEDTVLKN 234
LR+I E +LLD+ Y++PG+DI + I D V N
Sbjct: 272 LRSITEKVLLDAKYDLPGTDIHKLVIDADVVKGN 305
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 241 RGIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 276
RGIVFLDE DKI + + RDVGG GVQQ LK+
Sbjct: 75 RGIVFLDEFDKISSSLDLESRSFRDVGGRGVQQAFLKL 112
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 283 GIVFLDEVDKIGAVPGIHQ--LRDVGGEGVQQGMLKV 317
GIVFLDE DKI + + RDVGG GVQQ LK+
Sbjct: 76 GIVFLDEFDKISSSLDLESRSFRDVGGRGVQQAFLKL 112
>gi|445458101|ref|ZP_21446925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC047]
gi|444775745|gb|ELW99801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
baumannii OIFC047]
Length = 437
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 210 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 269 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 309 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 369 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 409
>gi|410092111|ref|ZP_11288651.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
viridiflava UASWS0038]
gi|409760539|gb|EKN45672.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
viridiflava UASWS0038]
Length = 427
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + ++ P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGSSKPLLI 413
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I +RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--MRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI P I +RDV GEGVQQ +LK+
Sbjct: 181 GIVYIDEIDKISRKSDNPSI--MRDVSGEGVQQALLKL 216
>gi|357389555|ref|YP_004904394.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kitasatospora
setae KM-6054]
gi|311896030|dbj|BAJ28438.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
[Kitasatospora setae KM-6054]
Length = 428
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+R+I R K +GFG
Sbjct: 215 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLERIIEGRAGAKGIGFG 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + D F +QV DL+ FGMIPEF+GR P+
Sbjct: 275 A---------------------TIRSKREVDSADHF-RQVMPEDLVKFGMIPEFIGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++ILTEPKNA+++QY+ LF +D V+L F+ +AL+AIA A+ + TGAR
Sbjct: 313 ITSVHNLDREALLQILTEPKNALVKQYRKLFELDGVELEFTRDALEAIADQAILRGTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MYEVP D+ V +T D V K+ P+ +
Sbjct: 373 GLRAIMEEVLMSVMYEVPSRQDVARVVVTGDVVSKHAIPTLV 414
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 159 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 216
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 217 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 250
>gi|350566317|ref|ZP_08935002.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
indolicus ATCC 29427]
gi|348662943|gb|EGY79571.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
indolicus ATCC 29427]
Length = 412
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDTTNILF+ GA++G+D +I R + +GFG
Sbjct: 209 LLKIIEGTVANVPPQGGRKHPNQEFIQVDTTNILFIVGGAFDGIDSIIESRTEKSSMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ T+ N+++ LK V D + FG+IPE +GR PI
Sbjct: 269 SELTDK-----------------------NRDRGLLLKDVRTEDFLKFGLIPELIGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ L+ ILT+PKNA+++QY+ L +D V+L F EAL+ IA+ A+EKK GAR
Sbjct: 306 TVTLEQLDEDALIEILTQPKNALVKQYKALLKLDDVELEFEDEALKYIAKSAIEKKAGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ ++D MYE+P D+ V IT+D+V + +P I
Sbjct: 366 GLRSIIENTIMDIMYEIPSRDDVEKVIITKDSVSGDKSPELI 407
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENIILKLVQAADYDIEKAEKGIIYIDEIDKIARKAENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 213 IEGTVANVPPQGG---RKHPNQEFIQVDTTNILFI 244
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKIARKAENVSITRDVSGEGVQQALLKI 212
>gi|357031708|ref|ZP_09093651.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter
morbifer G707]
gi|356414938|gb|EHH68582.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter
morbifer G707]
Length = 422
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTN+LF+ GA++GLD++I R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFSGLDKIIVARGKGSGIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR A L+ VE DL+ FG+IPEF+GR P+
Sbjct: 270 ADVRSDEERRLG----------------------AILQSVEPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L++ L++IL++PKNA+++QY LF M+ V LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 308 IAALNDLDEAALIQILSKPKNALVKQYARLFEMEGVKLTFTEDALVAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+IMES+LLD+M+++PG + + V I +D P Y+ G
Sbjct: 368 GLRSIMESILLDTMFDLPGLEGVEEVVINKDVAENKAKPVYVYG 411
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVDRAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNMLFIC 246
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 213
>gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacterales bacterium HTCC2083]
gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodobacteraceae bacterium HTCC2083]
Length = 377
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R +GFG
Sbjct: 166 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAARGKGSAMGFG 225
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ D++ ++E DL+ FG+IPEFVGR P+
Sbjct: 226 ADVRDN----------------------DDRGIGEIFTELEPEDLLRFGLIPEFVGRLPV 263
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 264 LATLEDLDEDALVTILTQPKNALVKQYQRLFELESTQLTFTEDALSAIAKRAIERKTGAR 323
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LLD+M+++PG D + V + ++ V + P I G
Sbjct: 324 GLRSILEEILLDTMFDLPGMDTVTEVVVNDEAVTSDAQPLMIHG 367
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 110 GEDVENIILKLLQASEYNVEKAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 167
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 168 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 202
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 133 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 169
>gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp.
TM1040]
gi|123077615|sp|Q1GGF7.1|CLPX_SILST RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|99037647|gb|ABF64259.1| ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria sp.
TM1040]
Length = 421
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 138/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I +R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ +S A E + +E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVREESDAGVGE--------TFRDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+ ILT+PKNA+++QYQ LF ++ +L F+ EAL AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LLD+M+E+PG + + V + E+ V P I
Sbjct: 369 GLRSILEDILLDTMFELPGMESVTKVVVNEEAVCSEAQPLMIHA 412
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|389703170|ref|ZP_10185464.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
HA]
gi|388611573|gb|EIM40673.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
HA]
Length = 436
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 142/221 (64%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +E+ K+ +QVEA DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVRNKEETKKLSDLFRQVEATDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QY+ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 310 IATLDELDEEALMQILTEPKNALTRQYKHLFDMENVDLVFEDSALRAVAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E+ LL++MY++P +D+ V ++E + P +
Sbjct: 370 GLRSILENSLLETMYDLPSRTDVGTVVVSEAVINGEAKPEF 410
>gi|338535320|ref|YP_004668654.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus fulvus
HW-1]
gi|337261416|gb|AEI67576.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus fulvus
HW-1]
Length = 425
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NV + + + E VQVDTTNILF+ GA++G+D +I RR EK LGFG
Sbjct: 218 LLKIIEGTRANVTPRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGVIKRRVGEKGLGFG 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R L L E DL+ FGMIPEF+GR P+
Sbjct: 278 AKITHREERSVGELLAL----------------------TEPEDLMRFGMIPEFIGRLPM 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L +E LV IL++PKNA+++QYQ LF M+KV LTF+ EAL+AIAR A+ + +GAR
Sbjct: 316 IATLNDLKEEDLVIILSQPKNALVKQYQKLFEMEKVKLTFTKEALRAIAREAMRRHSGAR 375
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ MY+VP + + ITE + K+ AP +
Sbjct: 376 GLRAILEDAMLEIMYDVPFREGVKECKITEQVITKHEAPQLV 417
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI G +P RDVGGEGVQQ +LK+
Sbjct: 185 RGIVYIDEIDKIARKGDMPS--ATRDVGGEGVQQALLKI 221
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A+ GIV++DE+DKI G +P RDVGGEGVQQ +LK+ P G +Y
Sbjct: 183 ASRGIVYIDEIDKIARKGDMPS--ATRDVGGEGVQQALLKIIEGTRANVTPRGG---KKY 237
Query: 337 PNTGYIWYRYPNTGYIW 353
Y+ N +I
Sbjct: 238 NQQEYVQVDTTNILFIC 254
>gi|383784112|ref|YP_005468681.1| clpX, ATPase regulatory subunit [Leptospirillum ferrooxidans C2-3]
gi|383083024|dbj|BAM06551.1| clpX, ATPase regulatory subunit [Leptospirillum ferrooxidans C2-3]
Length = 427
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDTTNILF+ GA+ GLD ++S+R + K LGFG
Sbjct: 212 LLKLVEGTVANVPPQGGRKHPHQEFIQVDTTNILFICGGAFIGLDNIVSQRISNKNLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED K+ L + DL+ +G+IPEFVGRFP+
Sbjct: 272 AD---------------------IRTVEDRKKVGELLVKSRPDDLLKYGLIPEFVGRFPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ +RILTEPKNA+I+Q++ LF+++ V LTF+ +AL+AIA A +KTGAR
Sbjct: 311 MAVLEDLDEDAFLRILTEPKNALIKQFEKLFSIEHVQLTFTLDALKAIAHKAFVQKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E ++LD MY++P +++ V I+E+T+ P IR
Sbjct: 371 GLRSILEEVMLDLMYDIPSVTNVREVIISEETINNGALPKIIR 413
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYDVEKAEKGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 214 KLVEGTVANVPPQGG---RKHPHQEFIQVDTTNILFIC 248
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 KGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 215
>gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales
bacterium HTCC2181]
gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales
bacterium HTCC2181]
Length = 425
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E VQ+DTTNILF+ GA++GL+++I R + +GFG
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPNQEFVQIDTTNILFICGGAFDGLEKIIKERTEKNSIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V + D K +K V++ DLI FG+IPEF+GR P+
Sbjct: 274 A---------------------EVQGKSDVKAFGDVVKNVQSEDLIRFGLIPEFIGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++E L+RILTEPKNA+ +Q++ LF ++ V+L F PEAL+AIA ALE+K+GAR
Sbjct: 313 ITTLESLDKEALIRILTEPKNALTKQFKKLFRIEGVELDFRPEALEAIAEKALERKSGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+I+E L ++M+E+P + D+ V I + + NT P I
Sbjct: 373 GLRSILEIALKETMFELPTTKDLEKVVIDGNVITDNTKPLMI 414
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 179 AQKGIVYIDEVDKISRKTDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 233
Query: 337 PNTGYIWYRYPNTGYIW 353
PN ++ N +I
Sbjct: 234 PNQEFVQIDTTNILFIC 250
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 181 KGIVYIDEVDKISRKTDNPSIT--RDVSGEGVQQALLKL 217
>gi|433449631|ref|ZP_20412495.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella ceti
NC36]
gi|429539145|gb|ELA07183.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella ceti
NC36]
Length = 414
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 134/223 (60%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGTI +VP + + E++QVDT NILF+ GA+ G++ ++ R K +GFG
Sbjct: 213 LLKMIEGTIASVPPQGGRKHPNQELIQVDTNNILFIVGGAFAGIESIVKERVGAKVIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ AA D + + QV DL+ FG+IPEF+GR PI
Sbjct: 273 T------SKEAAKFDD----------------SQSVMSQVLPEDLMRFGLIPEFIGRLPI 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L + LVRILTEPKNA+++QYQ LF ++ V L+F+ +AL A+A LA+E++TGAR
Sbjct: 311 LTALEELTEADLVRILTEPKNALVKQYQELFKLEDVKLSFTEDALNAMAHLAIERETGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+IME ++ D M++VP DI V I D V+ +T P I+
Sbjct: 371 GLRSIMEEVMRDIMFDVPSEDDIAEVIINADNVIAHTEPKLIK 413
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVP-- 256
+ + A++E+ L D+ E+ S+I M+ T + +YI + KI VP
Sbjct: 95 KRVNAMLENTLDDTGVELQKSNIAMIGPT------GSGKTYIA-----QSLAKILNVPFA 143
Query: 257 --GIHQLRDVG--GEGVQQGMLKVSALA-------AFGIVFLDEVDKIGA-VPGIHQLRD 304
L + G GE V+ +LK+ A GI+++DE+DKI + RD
Sbjct: 144 IADATTLTEAGYVGEDVENVVLKLLQAADGDVERAQTGIIYIDEIDKIAKKAENVSITRD 203
Query: 305 VGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
V GEGVQQ +LK+ + P G ++PN I N +I
Sbjct: 204 VSGEGVQQALLKMIEGTIASVPPQGG---RKHPNQELIQVDTNNILFI 248
>gi|258544427|ref|ZP_05704661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Cardiobacterium hominis ATCC 15826]
gi|258520316|gb|EEV89175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Cardiobacterium hominis ATCC 15826]
Length = 415
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 142/219 (64%), Gaps = 21/219 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ VP + + + E++ V+TTNILF+ GA+ GL++LI++R + +GFG
Sbjct: 209 LLKLVEGTVAAVPPQGGRKHPQQELIHVNTTNILFICGGAFAGLEKLIAKRTEQGGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A A+E+N + L+Q+E DL+ FG+IPEFVGR PI
Sbjct: 269 AHVHSKA-----------------EADENN---NRLLQQIEPEDLVKFGLIPEFVGRLPI 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+++ L+ ILTEPKNA+++Q++ +F + V L F+P+ALQAIA+ A+ +KTGAR
Sbjct: 309 IALLDTLDEDALIHILTEPKNAIVRQFEKIFGFENVALEFTPDALQAIAQKAITRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E LLD+M+ +P DI V +T T+L+ + P
Sbjct: 369 GLRSIVEQTLLDTMFNLPDQKDIDKVTVTAATILEGSTP 407
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAV-PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKGENLSITRDVSGEGVQQALLKL 212
>gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
Length = 424
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E L+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEGLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
DSM 15981]
gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
DSM 15981]
Length = 438
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ R + +GF
Sbjct: 213 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFIVGGAFDGLEKIVEARLSAGSIGFN 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + +++ D LK+VE +DL FG+IPEF+GR P+
Sbjct: 273 AEIVD----------------------KNDMNIDELLKKVEPKDLTKFGLIPEFIGRVPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V SL ++ +VRIL+EPKNA+I+QYQ L +D V L F+PEAL+ IA+LA+++K GAR
Sbjct: 311 NVSLQSLTRDAMVRILSEPKNALIKQYQKLLELDNVKLEFTPEALEEIAQLAVDRKIGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +++D MYE+P + I + IT D V P +
Sbjct: 371 GLRSIIEGVMMDLMYEIPSDESIGICTITRDVVKNRAQPELV 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLIQAADYDIARAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P+ + N +I
Sbjct: 217 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFI 248
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 216
>gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
BTAi1]
gi|166214758|sp|A5EKA7.1|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
sp. BTAi1]
Length = 424
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|420447949|ref|ZP_14946833.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-44]
gi|393066762|gb|EJB67580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
pylori Hp H-44]
Length = 448
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 302 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDDVDLIFEEEAIKEIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|302187982|ref|ZP_07264655.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
syringae pv. syringae 642]
Length = 427
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------NAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVARRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P SD+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSDVSKVVIDESVIDGSPKPLLI 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|284097336|ref|ZP_06385466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
Poribacteria sp. WGA-A3]
gi|283831155|gb|EFC35135.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
Poribacteria sp. WGA-A3]
Length = 419
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDT NIL + GA+ GL+ +I RR N+ +GF
Sbjct: 207 LLKLIEGTVANVPPQGGRKHPHQEFIQVDTKNILVICGGAFVGLEPIIERRLNQNRMGFK 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + SA R +SL L Q++ DL+ +G+IPEF+GR P+
Sbjct: 267 SDKSVSAQERPSSL----------------------LAQIQPEDLLHYGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L RIL EPKNA+ +QYQ L + DKV L F+ AL AIA A +KTGAR
Sbjct: 305 VTTLEELDERALTRILIEPKNALTKQYQKLLSFDKVKLKFTDGALHAIASKAHAQKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAIME ++LD MYEVP ++I V ITED +LK P
Sbjct: 365 GLRAIMEEVMLDIMYEVPSQTEIKEVVITEDVILKKGEP 403
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 151 GEDVENIILKLLQAADYEVERAERGIIYIDEIDKITRKADGPSITRDVSGEGVQQALLKL 210
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
+ P G ++P+ +I N
Sbjct: 211 IEGTVANVPPQGG---RKHPHQEFIQVDTKN 238
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 RGIIYIDEIDKITRKADGPSITRDVSGEGVQQALLKL 210
>gi|433461293|ref|ZP_20418903.1| ATP-dependent protease ATP-binding subunit ClpX [Halobacillus sp.
BAB-2008]
gi|432190120|gb|ELK47163.1| ATP-dependent protease ATP-binding subunit ClpX [Halobacillus sp.
BAB-2008]
Length = 425
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 136/223 (60%), Gaps = 25/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++G+D++I RR K +GFG
Sbjct: 208 LLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIDQIIKRRLGRKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ D EK L +V DL+ +G+IPEF+GR P+
Sbjct: 268 SEQAT-----------------------DESEKKELLTKVLPEDLLSYGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILT+PKNA+++QYQ LF +D V+L +AL+ IARLA+E+KTGAR
Sbjct: 305 IGSLEHLDEEALVEILTKPKNALVKQYQKLFQIDHVELEMEEDALREIARLAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVL-KNTAPSYI 240
GLR+I+E ++LD MYE+P DI IT++TV KN P +
Sbjct: 365 GLRSIIEGIMLDVMYELPSRDDIEKCIITKETVTAKNGRPKLV 407
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 210 KILEGTQASVPPQGG---RKHPHQEFIQIDTTNVLFI 243
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi
DSS-3]
gi|81350417|sp|Q5LUP9.1|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria
pomeroyi DSS-3]
Length = 424
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 213 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S R L ++E DL+ FG+IPEFVGR P+
Sbjct: 273 ADVRASDERGVGEL----------------------FTELEPEDLLKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ +L F+ +AL+AIA+ A+E+KTGAR
Sbjct: 311 LATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDDALKAIAKRAIERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++P D + V + E+ V + P I
Sbjct: 371 GLRSIMEDILLDTMFDLPSMDNVTKVVVNEEAVTSDAQPLLI 412
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|395786090|ref|ZP_10465818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bartonella
tamiae Th239]
gi|423717016|ref|ZP_17691206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bartonella
tamiae Th307]
gi|395424548|gb|EJF90735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bartonella
tamiae Th239]
gi|395427805|gb|EJF93888.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bartonella
tamiae Th307]
Length = 424
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + +E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKAVDERRIGEI----------------------FHDLEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LVRIL++PKNA+++QYQ LF M+ V LTF +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDIDALVRILSQPKNALVKQYQRLFEMENVTLTFHDDALRAIANKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVQEVVISSDVVNEKARPLYI 411
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|357406375|ref|YP_004918299.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Methylomicrobium alcaliphilum 20Z]
gi|351719040|emb|CCE24714.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Methylomicrobium alcaliphilum 20Z]
Length = 423
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QV+T NILF+ GA+ GLDR+I R + +GF
Sbjct: 211 LLKLIEGTVASVPPQGGRKHPQQEFLQVNTANILFIVGGAFAGLDRVIKARSEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V A++++K QVEA DLI +G+IPEFVGR P+
Sbjct: 270 --------------------SAEVKAKDNDKNVGEIFAQVEAEDLIKYGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILTEPKNA+++QYQ LF M+ +L F ++L AIAR ++E+KTGAR
Sbjct: 310 VATLEELDEEALVKILTEPKNALVKQYQHLFEMEGAELEFREDSLHAIARKSMERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR I+E++LLD+MY++P ++ I V + E + + P
Sbjct: 370 GLRTIVENVLLDTMYDLPSAENITKVVVDEGVISGESKP 408
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 176 AESGIVYIDEIDKISRKADNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYI 352
P ++ N +I
Sbjct: 231 PQQEFLQVNTANILFI 246
>gi|405360691|ref|ZP_11025632.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chondromyces
apiculatus DSM 436]
gi|397090380|gb|EJJ21244.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 425
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NV + + + E VQVDTTNILF+ GA++G+D +I RR EK LGFG
Sbjct: 218 LLKIIEGTRANVTPRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGVIKRRVGEKGLGFG 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R L L E DL+ FGMIPEF+GR P+
Sbjct: 278 AKITHREERSVGELLAL----------------------TEPEDLMRFGMIPEFIGRLPM 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L +E LV IL++PKNA+++QYQ LF M+KV LTF+ EAL+AIAR A+ + +GAR
Sbjct: 316 IATLNDLKEEDLVIILSQPKNALVKQYQKLFEMEKVKLTFTKEALRAIAREAMRRHSGAR 375
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ MY+VP + + ITE + K+ AP +
Sbjct: 376 GLRAILEDAMLEIMYDVPFREGVKECKITEQVITKHEAPQLV 417
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI G +P RDVGGEGVQQ +LK+
Sbjct: 185 RGIVYIDEIDKIARKGDMPS--ATRDVGGEGVQQALLKI 221
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A+ GIV++DE+DKI G +P RDVGGEGVQQ +LK+ P G +Y
Sbjct: 183 ASRGIVYIDEIDKIARKGDMPS--ATRDVGGEGVQQALLKIIEGTRANVTPRGG---KKY 237
Query: 337 PNTGYIWYRYPNTGYIW 353
Y+ N +I
Sbjct: 238 NQQEYVQVDTTNILFIC 254
>gi|50083773|ref|YP_045283.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
ADP1]
gi|61211483|sp|Q6FEP7.1|CLPX_ACIAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|49529749|emb|CAG67461.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
ADP1]
Length = 436
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRHEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------NAEVKKKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QYQ LF M+ VDL F AL+AIA+ ALE+ TGAR
Sbjct: 310 IATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVFEESALRAIAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+IME++LL++MY++P DI V + E + P Y
Sbjct: 370 GLRSIMENVLLETMYDLPSRKDIGTVVVNEAVIRGEAEPEY 410
>gi|259507909|ref|ZP_05750809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX, partial
[Corynebacterium efficiens YS-314]
gi|259164404|gb|EEW48958.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Corynebacterium efficiens YS-314]
Length = 422
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + + +Q+DTTNILF+ +GA++GL+++I R+ +K LGFG
Sbjct: 215 LLKILEGTVAAIPPQGGRKHPNQDFIQLDTTNILFIVAGAFSGLEKIIGERRGKKGLGFG 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V++++D +++D F K V DL+ FG+IPEF+GR P+
Sbjct: 275 VE---------------------VASKKDEEKEDIF-KDVRPEDLVKFGLIPEFIGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+QE LV++LTEP+N++++QY+ LF MD LTF+ +AL+AIA LALE+KTGAR
Sbjct: 313 VATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIADLALERKTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ MY++P D+ V IT + P I
Sbjct: 373 GLRAILEEILVPIMYDIPDRDDVTEVVITGEVARGEAEPELI 414
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 159 GEDVENILLKLLQAADFDVERAQRGIIYIDEVDKISRKSENPSI--TRDVSGEGVQQALL 216
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 217 KILEGTVAAIPPQGG---RKHPNQDFIQLDTTNILFI 250
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 182 RGIIYIDEVDKISRKSENPSI--TRDVSGEGVQQALLKI 218
>gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
vulgare Y25]
gi|385233714|ref|YP_005795056.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
vulgare WSH-001]
gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
vulgare Y25]
gi|343462625|gb|AEM41060.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
vulgare WSH-001]
Length = 422
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 138/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+I++R + +GF
Sbjct: 211 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIIAQRSKGQGMGFN 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R L ++E DL+ FG+IPEFVGR P+
Sbjct: 271 ANVREVDERGVGEL----------------------FMELEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + L++ILTEPKNA+++QYQ LF ++ V LTF+ +AL+AIA A+E+KTGAR
Sbjct: 309 IATLTDLDVDALIQILTEPKNALVKQYQRLFDIEAVKLTFTEDALKAIASKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAPSYIRG 242
GLR+IME +LLD+M+E+PG + + V + ED VL P I
Sbjct: 369 GLRSIMEGILLDTMFELPGLETVSEVVVNEDAVLHGAKPLQIHA 412
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 214
>gi|256842924|ref|ZP_05548412.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256848701|ref|ZP_05554135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
MV-1A-US]
gi|262045891|ref|ZP_06018855.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
crispatus MV-3A-US]
gi|293381819|ref|ZP_06627791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
crispatus 214-1]
gi|312978251|ref|ZP_07789994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
crispatus CTV-05]
gi|423317765|ref|ZP_17295662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
crispatus FB049-03]
gi|423321103|ref|ZP_17298975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
crispatus FB077-07]
gi|256614344|gb|EEU19545.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256714240|gb|EEU29227.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
MV-1A-US]
gi|260573850|gb|EEX30406.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
crispatus MV-3A-US]
gi|290921605|gb|EFD98635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
crispatus 214-1]
gi|310894770|gb|EFQ43841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
crispatus CTV-05]
gi|405596426|gb|EKB69762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
crispatus FB077-07]
gi|405597824|gb|EKB71074.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
crispatus FB049-03]
Length = 421
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 138/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + E D D + + + DL+ FGMIPEF+GR PI
Sbjct: 268 AEN-----------------------EADKINADDWTRHLTTADLVKFGMIPEFIGRIPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LVR+LTEPKNA+++QY+ L ++D V+L F+ AL+AIA LA+++ GAR
Sbjct: 305 ITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIADLAIQRNMGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MYE P DI V +T+D + K+ P IR
Sbjct: 365 GLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKHAKPKVIR 407
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 212 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 243
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 211
>gi|190573023|ref|YP_001970868.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
maltophilia K279a]
gi|254524793|ref|ZP_05136848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Stenotrophomonas sp. SKA14]
gi|344206261|ref|YP_004791402.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Stenotrophomonas maltophilia JV3]
gi|424667285|ref|ZP_18104310.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia Ab55555]
gi|229485949|sp|B2FQR3.1|CLPX_STRMK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|190010945|emb|CAQ44554.1| ATP-dependent clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia K279a]
gi|219722384|gb|EED40909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Stenotrophomonas sp. SKA14]
gi|343777623|gb|AEM50176.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Stenotrophomonas maltophilia JV3]
gi|401069420|gb|EJP77942.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia Ab55555]
gi|456738230|gb|EMF62907.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia EPM1]
Length = 429
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDVGSIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIAR AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MY++P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEHKSEPYL 413
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 216
>gi|87201066|ref|YP_498323.1| ATP-dependent protease ATP-binding subunit ClpX [Novosphingobium
aromaticivorans DSM 12444]
gi|123488135|sp|Q2G3T4.1|CLPX_NOVAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|87136747|gb|ABD27489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Novosphingobium aromaticivorans DSM 12444]
Length = 418
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GL+++I+ R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIADRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R+ L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPDKRKVGEL----------------------LQKAEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L+ E LV+IL EPKNA+++QY LF ++ V LTF+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 IATLNDLDIEALVKILKEPKNALVKQYAKLFELEDVTLTFTDDALEAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E LLLD+M++VP SDI + + +D V P
Sbjct: 369 GLRSIVEGLLLDTMFDVPTESDIAEIVVDKDVVEGRKEP 407
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQHGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
>gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
HTCC2516]
gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
HTCC2516]
Length = 422
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R + K +E DL+ FG+IPEFVGR P+
Sbjct: 269 ADVRDVEERGVGEV----------------------FKSLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILT+PKNA+++QYQ LF ++ LTF+ +A++AIA+ A+E+KTGAR
Sbjct: 307 IATLEDLDEEALVTILTQPKNALVKQYQRLFDLEDTKLTFTDDAMKAIAKRAIERKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG D + V + E+ V + P I
Sbjct: 367 GLRSIMEDILLDTMFDLPGMDSVNEVVVNEEAVGPDATPLMI 408
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|419640451|ref|ZP_14172385.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|380619512|gb|EIB38571.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 407
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S +EDNK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 DDS-----------------------KEDNK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALKAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|345876363|ref|ZP_08828135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
weaveri LMG 5135]
gi|417956978|ref|ZP_12599909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
weaveri ATCC 51223]
gi|343966610|gb|EGV34865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
weaveri LMG 5135]
gi|343969410|gb|EGV37624.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
weaveri ATCC 51223]
Length = 396
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 170 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 229
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A VS++++N + VE DLI FG+IPE +GR P+
Sbjct: 230 A---------------------VVSSKDENINISELFESVEPEDLIKFGLIPELIGRLPV 268
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV ILTEPKNA+++QYQ+LF M+ V+L PEAL IA+LA+E+KTGAR
Sbjct: 269 IATLAELDEAALVNILTEPKNALVKQYQVLFDMEGVELEVEPEALSCIAKLAMERKTGAR 328
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLD+MY +P DI V +TE V P +
Sbjct: 329 GLRSIVERSLLDTMYRLPDLKDIKKVVLTEGAVKNGQQPKLL 370
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 114 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALL 171
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 172 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 206
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 137 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 173
>gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
fimi ATCC 484]
gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
fimi ATCC 484]
Length = 425
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + E +Q+DTTN+LF+ +GA++GLD +I+ R ++ +GFG
Sbjct: 212 LLKIIEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFSGLDDIIAARARKRVVGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ES + E D F +V DL +G+IPEF+GR P+
Sbjct: 272 APLLES-----------------------HDEGDLF-SEVRPEDLQKYGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+Q LVRILTEP+NA+++QYQ +F +D V+L F EA+ AIA AL + TGAR
Sbjct: 308 VAAVSRLDQSALVRILTEPRNALVKQYQRMFQIDGVELEFEDEAVAAIADQALLRGTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L M+EVP D+ V IT+D VL+N P+ +
Sbjct: 368 GLRAIMEEVLQQVMFEVPSRDDVARVVITQDVVLENVNPTLV 409
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENILLKLIQAADYDVKKAEQGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 214 KIIEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 247
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 QGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 215
>gi|405365023|ref|ZP_11026469.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chondromyces
apiculatus DSM 436]
gi|397089588|gb|EJJ20497.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 427
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 141/238 (59%), Gaps = 28/238 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GLD++I RR + LGFG
Sbjct: 212 LLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ SL +L LK VE DL+ FGMIPEF+GR PI
Sbjct: 272 A---DVQSKKQRSLTEL-------------------LKHVEPEDLLKFGMIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ IL +PKNA+ +QY+ LF +D V L F+ AL+AIA A+ +K GAR
Sbjct: 310 ITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKAGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVP 256
GLR+I+ES +LD MYE+P V I+E+ +L+ + P +V + +K A P
Sbjct: 370 GLRSILESAMLDVMYEIPSRKTAREVLISEEVILRKSEP-----VVLHAQAEKDAAEP 422
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKL 215
>gi|311031427|ref|ZP_07709517.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus sp.
m3-13]
Length = 422
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
T++ D+ E+ L +V DL+ FG+IPEF+GR P+
Sbjct: 268 TAETKA----------------------DDLEQKELLGKVLPEDLLRFGLIPEFIGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L+++ L+ ILT+PKNA+++QYQ + +D V+L F AL IA+ A+E+KTGAR
Sbjct: 306 TASLMPLDEDALIEILTKPKNALVKQYQKMLDLDNVELEFEEGALTEIAKKAIERKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD MYE+P DI IT +TV N AP I
Sbjct: 366 GLRSIIEGIMLDVMYELPSREDIKKCVITAETVADNVAPKLI 407
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|25028847|ref|NP_738901.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
efficiens YS-314]
gi|46576594|sp|Q8FN57.1|CLPX_COREF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|23494133|dbj|BAC19101.1| putative ATP-dependent Clp protease ATP-binding subunit
[Corynebacterium efficiens YS-314]
Length = 426
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + + +Q+DTTNILF+ +GA++GL+++I R+ +K LGFG
Sbjct: 218 LLKILEGTVAAIPPQGGRKHPNQDFIQLDTTNILFIVAGAFSGLEKIIGERRGKKGLGFG 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V++++D +++D F K V DL+ FG+IPEF+GR P+
Sbjct: 278 VE---------------------VASKKDEEKEDIF-KDVRPEDLVKFGLIPEFIGRLPV 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+QE LV++LTEP+N++++QY+ LF MD LTF+ +AL+AIA LALE+KTGAR
Sbjct: 316 VATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIADLALERKTGAR 375
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ MY++P D+ V IT + P I
Sbjct: 376 GLRAILEEILVPIMYDIPDRDDVTEVVITGEVARGEAEPELI 417
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 162 GEDVENILLKLLQAADFDVERAQRGIIYIDEVDKISRKSENPSI--TRDVSGEGVQQALL 219
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 220 KILEGTVAAIPPQGG---RKHPNQDFIQLDTTNILFI 253
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 185 RGIIYIDEVDKISRKSENPSI--TRDVSGEGVQQALLKI 221
>gi|227877365|ref|ZP_03995436.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
JV-V01]
gi|227863033|gb|EEJ70481.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
JV-V01]
Length = 429
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 138/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + EM+++DTTNILF+ GA++G+++++ R +K +GFG
Sbjct: 216 LLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFG 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + E D D + + + DL+ FGMIPEF+GR PI
Sbjct: 276 AEN-----------------------EADKINADDWTRHLTTADLVKFGMIPEFIGRIPI 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LVR+LTEPKNA+++QY+ L ++D V+L F+ AL+AIA LA+++ GAR
Sbjct: 313 ITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIADLAIQRNMGAR 372
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR I+E+ ++D MYE P DI V +T+D + K+ P IR
Sbjct: 373 GLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKHAKPKVIR 415
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 160 GEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 219
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P I N +I
Sbjct: 220 LEGTIASVPPQGG---RKHPQQEMIKMDTTNILFI 251
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 183 RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKI 219
>gi|297199669|ref|ZP_06917066.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sviceus ATCC 29083]
gi|197713961|gb|EDY57995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sviceus ATCC 29083]
Length = 428
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL++LI R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELEAKDQF-EDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYE+P D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|126640550|ref|YP_001083534.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
baumannii ATCC 17978]
Length = 364
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT+NILF+ GA+ GL++++ +R+ + +GF
Sbjct: 137 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQRQEKGGIGF- 195
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 196 --------------------TADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 235
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 236 IATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNTGAR 295
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 296 GLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVY 336
>gi|456354944|dbj|BAM89389.1| ATP-dependent protease ATP-binding subunit ClpX [Agromonas
oligotrophica S58]
Length = 424
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|366086058|ref|ZP_09452543.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus zeae
KCTC 3804]
Length = 416
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R EK +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIESIVKNRIGEKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S NQ + D + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 270 TDSN--------------NQ-----VDPDK----SLMQQIIPEDLMQFGIIPEFIGRIPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L LN+ LVRILTEPKNA+++QYQ L ++D DL F+P AL+AIA A+ + TGAR
Sbjct: 307 LAALEKLNENDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQAIVRDTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IME+++ D+M+++P SD+ V +T+ V P +
Sbjct: 367 GLRSIMEAIMQDTMFDLPSRSDVDKVVVTKAAVEGKAKPQLV 408
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADYDVERAEKGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
>gi|419802167|ref|ZP_14327368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parainfluenzae HK262]
gi|419845296|ref|ZP_14368572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parainfluenzae HK2019]
gi|385191489|gb|EIF38903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parainfluenzae HK262]
gi|386416071|gb|EIJ30585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
parainfluenzae HK2019]
Length = 412
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 143/219 (65%), Gaps = 21/219 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + EM++VDT+ ILF+ GA+ GLD++I +R + G G
Sbjct: 208 LLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKILFICGGAFAGLDKIIGKR-TQTDTGIG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ +L++L +QVE DL+ FG+IPEF+GR P+
Sbjct: 267 FDAKVEKEEEKENLSEL-------------------FRQVEPDDLMKFGLIPEFIGRLPM 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E L++ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGAR
Sbjct: 308 IAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
GLR+I+E++LLD+MY++P + L V + E+T++ N P
Sbjct: 368 GLRSIVEAVLLDTMYDLPSIENLQKVIVDEETIVDNKPP 406
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGI 299
+GI+++DE+DKI G RDV GEGVQQ +LK+ I +VP
Sbjct: 175 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIE------------GTIASVP-- 220
Query: 300 HQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ MLKV TS + +
Sbjct: 221 ---PQGGRKHPQQEMLKVDTSKILF 242
>gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
F0268]
gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
F0268]
Length = 438
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 135/224 (60%), Gaps = 25/224 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL+ +I +R +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLEHIIEKRIASGSIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEK-DAFLKQVEARDLIDFGMIPEFVGRFP 138
A E NK+ D LKQV+ DL FG+IPEF+GR P
Sbjct: 268 AEIVEK-----------------------NKDNYDDVLKQVQPEDLTKFGLIPEFIGRVP 304
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+ V S + + L RILT PKNA+++QYQ LF MD V L+FS +A+ AIA A+++KTGA
Sbjct: 305 VDVELSSHDVDSLKRILTTPKNALVKQYQKLFEMDGVGLSFSDDAVTAIAEKAVQRKTGA 364
Query: 199 RGLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYIR 241
RGLR+IME ++ + MYE+P DI V IT+D V P R
Sbjct: 365 RGLRSIMEGMMTEIMYEIPSDEDIAEVEITKDVVENQAKPRVER 408
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLIQAADYDISKAEIGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P I N +I
Sbjct: 212 LEGTVASVPPQGG---RKHPQQELIQIDTTNILFIC 244
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 211
>gi|386717298|ref|YP_006183624.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia D457]
gi|384076860|emb|CCH11445.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Stenotrophomonas maltophilia D457]
Length = 429
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDVGSIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIAR AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MY++P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEHKSEPYL 413
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 216
>gi|365838986|ref|ZP_09380239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeroglobus
geminatus F0357]
gi|364566007|gb|EHM43713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeroglobus
geminatus F0357]
Length = 415
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 140/219 (63%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT NVP + + EM+Q+DTTNILF+ GA++G+++ I R+ EK +GFG
Sbjct: 211 LLKILEGTEANVPPQGGRKHPHQEMLQIDTTNILFICGGAFDGIEKTIRSRRTEKNMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ S EE LK++ DL FG+IPE +GR P+
Sbjct: 271 A--------------DIHKKNEE-SVEE-------LLKEIIPTDLQKFGLIPELIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV + L++E +V ILTEPKNA+++QYQ + MD+V LTF+ +AL+AIA AL +KTGAR
Sbjct: 309 LVTLNPLDEEAMVHILTEPKNALVKQYQKMLDMDEVKLTFTDDALKAIAEEALRRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E ++LD M++ P D+ +T+++++ AP
Sbjct: 369 GLRSIIERIMLDVMFDAPSRKDVEECIVTKESIIDGKAP 407
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENCLLKLIQAADFDIARAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P+ + N +I
Sbjct: 213 KILEGTEANVPPQGG---RKHPHQEMLQIDTTNILFIC 247
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 214
>gi|225850860|ref|YP_002731094.1| ATP-dependent protease ATP-binding subunit ClpX [Persephonella
marina EX-H1]
gi|225645554|gb|ACO03740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Persephonella
marina EX-H1]
Length = 411
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ N+P + + E +Q+DT+NILF+ GA+ GL+ +I +R +K +GF
Sbjct: 208 LLKILEGTVANIPPQGGRKHPHQEFIQLDTSNILFILGGAFVGLEDIIKQRIGKKSIGF- 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A Q + EE N L +V DLI FG+IPEF+GR P+
Sbjct: 267 -----------------ATQIRSKEEEEGN-----ILSKVRVEDLIKFGLIPEFIGRIPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+LTEPKNA+I+QY+ L +MD V+L F+ +A++AIA+ A+++KTGAR
Sbjct: 305 VATLDELDEDALVRVLTEPKNALIKQYKKLLSMDGVELEFTDDAIRAIAKEAIDRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P + + V I +D VLK P I
Sbjct: 365 GLRAIVEEIMLDVMYEIPQAQGVKKVVIDKDVVLKKKQPVMI 406
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 280 AAFGIVFLDEVDKI----GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYR 335
A GI+++DE+DKI G P I RDV GEGVQQ +LK+ + P G +
Sbjct: 172 AEKGIIYIDEIDKIAKKSGENPSIT--RDVSGEGVQQALLKILEGTVANIPPQGG---RK 226
Query: 336 YPNTGYIWYRYPNTGYIW 353
+P+ +I N +I
Sbjct: 227 HPHQEFIQLDTSNILFIL 244
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 241 RGIVFLDEVDKI----GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIAKKSGENPSIT--RDVSGEGVQQALLKI 211
>gi|194364615|ref|YP_002027225.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
maltophilia R551-3]
gi|238693450|sp|B4SLN2.1|CLPX_STRM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|194347419|gb|ACF50542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Stenotrophomonas maltophilia R551-3]
Length = 429
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R + +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDVGSIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSAERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F P+AL AIAR AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MY++P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEHKSEPYL 413
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 216
>gi|34498012|ref|NP_902227.1| ATP-dependent protease ATP-binding subunit ClpX [Chromobacterium
violaceum ATCC 12472]
gi|46576429|sp|Q7NUZ0.1|CLPX_CHRVO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|34103867|gb|AAQ60227.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Chromobacterium violaceum ATCC 12472]
Length = 426
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 129/198 (65%), Gaps = 21/198 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E +QVDTTNILF+ GA++GLD++I +R + +GFG
Sbjct: 215 LLKLIEGTVASVPPQGGRKHPNQEFIQVDTTNILFICGGAFDGLDKIIRQRSEKGGIGFG 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A VS+++D K ++VE +D+I FG+IPE +GR P+
Sbjct: 275 A---------------------EVSSKDDGKSLTKLFQEVEPQDIIRFGLIPELIGRLPV 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILT+PKNA+I+QYQ LF+++ V+L P AL+ IA+ AL +KTGAR
Sbjct: 314 VATLEELDEEALVSILTQPKNALIKQYQKLFSLETVELEVRPSALRVIAKQALARKTGAR 373
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E LLD+MYE+P
Sbjct: 374 GLRSILERALLDTMYELP 391
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 180 AQRGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 234
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 235 PNQEFIQVDTTNILFIC 251
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 182 RGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 218
>gi|239827924|ref|YP_002950548.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp.
WCH70]
gi|259491261|sp|C5D5L4.1|CLPX_GEOSW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|239808217|gb|ACS25282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
sp. WCH70]
Length = 421
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 138/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++GL+ +I RR +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEPIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +S D EK+ L +V DL+ FG+IPEFVGR P+
Sbjct: 268 ADIQQS----------------------DVDEKN-LLSKVLPEDLLKFGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QYQ + +D V+L F EAL+ IA+ A+E+KTGAR
Sbjct: 305 ITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEEALREIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E ++LD M+E+P D+ IT +TV N P IR
Sbjct: 365 GLRSIIEGIMLDVMFELPSREDVQKCIITVETVRGNKPPKLIR 407
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
parainfluenzae ATCC 33392]
Length = 412
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 143/219 (65%), Gaps = 21/219 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + EM++VDT+ ILF+ GA+ GLD++I +R + G G
Sbjct: 208 LLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKILFICGGAFAGLDKIIGKR-TQTDTGIG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ +L++L +QVE DL+ FG+IPEF+GR P+
Sbjct: 267 FDAKVEKEEEKENLSEL-------------------FRQVEPDDLMKFGLIPEFIGRLPM 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E L++ILT+PKNA+ +QYQ LF ++ V+L F+PEAL+A+A+ ALE+KTGAR
Sbjct: 308 IAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E++LLD+MY++P ++ V + E+T++ N P
Sbjct: 368 GLRSIVEAVLLDTMYDLPSIENLKKVIVDEETIVDNKPP 406
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGI 299
+GI+++DE+DKI G RDV GEGVQQ +LK+ I +VP
Sbjct: 175 QGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIE------------GTIASVP-- 220
Query: 300 HQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ MLKV TS + +
Sbjct: 221 ---PQGGRKHPQQEMLKVDTSKILF 242
>gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
gi|336422808|ref|ZP_08602949.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 5_1_57FAA]
gi|167660964|gb|EDS05094.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
scindens ATCC 35704]
gi|336007149|gb|EGN37175.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 5_1_57FAA]
Length = 419
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 136/213 (63%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E++Q+DTTNILF+ GA+ G+D+++ +R ++K +GF
Sbjct: 211 LLKIVEGTVANVPPQGGRKHPHQELIQIDTTNILFICGGAFEGIDKIVEKRIDQKSIGFN 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+A + + D L QV +DL+ FG+IPE VGR P+
Sbjct: 271 A--------------DIAKKH--------ENDVDRLLAQVLPQDLVKFGLIPELVGRMPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ L++IL+EPKNA+++QYQ L +D VDL F +AL+AIA +L++KTGAR
Sbjct: 309 TVALEMLDKKALMQILSEPKNAIVKQYQKLLELDGVDLIFDQKALEAIAETSLKRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTV 231
GLRAIME++++D MY+ P + L ITED V
Sbjct: 369 GLRAIMENIMMDIMYKAPSDETLKSCRITEDVV 401
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A +GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENILLKIIQAADGDIERAEYGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ I N +I
Sbjct: 213 KIVEGTVANVPPQGG---RKHPHQELIQIDTTNILFIC 247
>gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
10507]
gi|225039573|gb|EEG49819.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
hydrogenotrophica DSM 10507]
Length = 432
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 139/221 (62%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA+ GL+++I+ RK++K +GFG
Sbjct: 210 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGLEKIIATRKDQKSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A SA+E N + L++V D I FG+IPEF+GR P+
Sbjct: 270 AD--------------------VRSAKEHNVGE--LLREVMPEDFIKFGLIPEFIGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V ++L++E L+RIL EPKN++++QY+ LF +D V+L F +AL+ IA +LE+KTGAR
Sbjct: 308 VVSLNALDEEALIRILQEPKNSLVKQYRKLFELDGVELDFQKDALKLIAEKSLERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR+IMES ++D MY+VP + + ++ TA I
Sbjct: 368 GLRSIMESTMMDLMYQVPSDHTIQKCVITKEAVEGTAEPEI 408
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ +I N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 246
>gi|116492902|ref|YP_804637.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus
pentosaceus ATCC 25745]
gi|122265634|sp|Q03F27.1|CLPX_PEDPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|116103052|gb|ABJ68195.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pediococcus
pentosaceus ATCC 25745]
Length = 418
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 139/220 (63%), Gaps = 24/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q++TTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 213 LLKILEGTIANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+ + EED + ++QV DL++FG+IPEF+GR PI
Sbjct: 273 T-------------------NASTTVEEDK----SLMQQVIPEDLLNFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LV ILTEPKNA+++QY+ L +D V+L F+P+AL AIA A+ + TGAR
Sbjct: 310 LSALEKLTEEDLVHILTEPKNALVKQYKTLLGLDGVELKFTPQALHAIANQAISRNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLR+I+E+++ D M+E+P +D+ V + + TV++ P
Sbjct: 370 GLRSIIENVMRDIMFEIPSRNDVAKVTVNKKTVIEGAEPE 409
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLLQNADYNVEAAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPQQEFIQINTTNILFI 248
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 180 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
>gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium
japonicum USDA 110]
gi|421598922|ref|ZP_16042240.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
CCGE-LA001]
gi|46576546|sp|Q89KG2.1|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium
japonicum USDA 110]
gi|404268967|gb|EJZ33329.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
CCGE-LA001]
Length = 423
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRSTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 270 A---------------------QVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILEAILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|409426235|ref|ZP_11260797.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
HYS]
Length = 427
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQARSTRGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++++ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKQEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 372 GLRSILEGILLDTMYEIPSQKDVSKVVIDESVIDGSSQPLLI 413
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|421894267|ref|ZP_16324757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
pentosaceus IE-3]
gi|385272811|emb|CCG90129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
pentosaceus IE-3]
Length = 418
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 139/220 (63%), Gaps = 24/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q++TTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 213 LLKILEGTIANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+ + EED + ++QV DL++FG+IPEF+GR PI
Sbjct: 273 T-------------------NASTTVEEDK----SLMQQVIPEDLLNFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LV ILTEPKNA+++QY+ L +D V+L F+P+AL AIA A+ + TGAR
Sbjct: 310 LSALEKLTEEDLVHILTEPKNALVKQYKTLLGLDGVELKFTPQALHAIANQAISRNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLR+I+E+++ D M+E+P +D+ V + + TV++ P
Sbjct: 370 GLRSIIENVMRDIMFEIPSRNDVAKVTVNKKTVIEGAEPE 409
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLLQNADYNVEAAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPQQEFIQINTTNILFI 248
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 180 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
>gi|213610197|ref|ZP_03370023.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 275
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 63 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 122
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 123 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 161
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E LV+IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 162 VVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAIARKAMARKTGA 221
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 222 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 266
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 30 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 66
>gi|21221074|ref|NP_626853.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
coelicolor A3(2)]
gi|23813896|sp|Q9F316.1|CLPX_STRCO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|10280517|emb|CAC09993.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
coelicolor A3(2)]
Length = 428
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F +QV DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------QIRSKREIESKDQF-EQVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QY+ LF +D V+L F AL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFERGALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D VL N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLI 413
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|335357124|ref|ZP_08548994.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
animalis KCTC 3501]
Length = 411
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E +Q+DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 210 LLKILEGTVANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S +S E + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 270 ADSKQSYD-----------------------ESKSIMQQIIPEDLLKFGLIPEFIGRLPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LVRILTEPKNA+++QY L D V L F +AL+ +A LA+E+ TGAR
Sbjct: 307 LTALEKLSEDDLVRILTEPKNALVKQYSKLLEFDGVKLEFEEDALREVAHLAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ + D M+EVP + +I V I++DTVL P+ +
Sbjct: 367 GLRSIIEATMRDIMFEVPSNKEIEKVIISKDTVLGKAEPTLV 408
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQNADYDVERAQRGIVYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTVANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKI 213
>gi|330469648|ref|YP_004407391.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
maris AB-18-032]
gi|328812619|gb|AEB46791.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
maris AB-18-032]
Length = 431
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 132/222 (59%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLD++I R GFG
Sbjct: 214 LLKMLEGTVANVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RA S + D QV D++ FG+IPEF+GR P+
Sbjct: 274 AR------LRAVS----------------ERSTDDIFGQVMPEDMLKFGLIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++ LVRILTEP+NA+++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 312 ITSVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFERPALEAIADQAMLRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP + D V IT + VL+N P+ +
Sbjct: 372 GLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENVNPTIV 413
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 216 KMLEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFIC 250
>gi|399520090|ref|ZP_10760871.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111982|emb|CCH37430.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 426
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 140/217 (64%), Gaps = 21/217 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQARSTKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++++ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------EVRSKQEGKKIGESLREVEPDDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +QY LF M+ VDL F P+AL+++A+ ALE+KTGAR
Sbjct: 311 IATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKSVAQKALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA 236
GLR+I+E +LLD+MYE+P + + +++V++ ++
Sbjct: 371 GLRSILEGILLDTMYEIPSQQGVSKVVIDESVIEGSS 407
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
NRL30031/H210]
gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
NRL30031/H210]
Length = 421
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV ++++N + A + VE DLI FG+IPE +GR P+
Sbjct: 272 A---------------------AVHSKDENADISALFETVEPEDLIKFGLIPELIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILTEPKNA+++QYQ LF M+ V L F +AL++IA+LA+E+KTGAR
Sbjct: 311 IATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIAKLAMERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E LLD+MY +P + V I ++ V K P R
Sbjct: 371 GLRSIVERCLLDTMYALPDLKGVAKVVINKEVVEKGEQPKLFR 413
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 214 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 248
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|336430078|ref|ZP_08610034.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001249|gb|EGN31394.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 424
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E++Q+DT+NILF+ GA++GLD+++ R + K +GF
Sbjct: 210 LLKIIEGTVASVPPQGGRKHPHQELIQIDTSNILFICGGAFDGLDKIVETRLDRKSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + R L L +V DL+ +G+IPEFVGR P+
Sbjct: 270 AEIADKSTREMGEL----------------------LAEVTPTDLVKYGLIPEFVGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E ++RILTEPKNA+++QYQ LF+ D V LTF P+A++AIA A+E+KTGAR
Sbjct: 308 NVSLLGLDKEAMMRILTEPKNALVKQYQKLFSFDHVKLTFEPDAVEAIAIKAMERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+I+E++++D MY +P D I IT++ V + P
Sbjct: 368 GLRSILENVMMDVMYRIPSDDTIEQCIITKEAVDGESEP 406
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLIQAADYDVERAQYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ I N +I
Sbjct: 214 IEGTVASVPPQGG---RKHPHQELIQIDTSNILFIC 246
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
aurantiaca DW4/3-1]
gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
aurantiaca DW4/3-1]
Length = 426
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NV + + + E VQVDTTNILF+ GA++G+D +I RR EK LGFG
Sbjct: 218 LLKIIEGTRANVTPRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFG 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R L +A E DL+ FGMIPEF+GR P+
Sbjct: 278 ARITHREERSVGELLAMA----------------------EPEDLMKFGMIPEFIGRLPM 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L ++ LV ILT+PKNA+++QYQ LF ++KV LTFS E+L+AIAR A+ + +GAR
Sbjct: 316 VATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAIAREAMRRNSGAR 375
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY+VP + + ITE+ + K+ P I
Sbjct: 376 GLRAIMEDAMLEVMYDVPFREGVKECKITENVITKHEPPQII 417
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
AA GIV++DE+DKI G P RDVGGEGVQQ +LK+ P G +Y
Sbjct: 183 AARGIVYIDEIDKIARKGDTPS--ATRDVGGEGVQQALLKIIEGTRANVTPRGG---KKY 237
Query: 337 PNTGYIWYRYPNTGYIW 353
Y+ N +I
Sbjct: 238 NQQEYVQVDTTNILFIC 254
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI G P RDVGGEGVQQ +LK+
Sbjct: 185 RGIVYIDEIDKIARKGDTPS--ATRDVGGEGVQQALLKI 221
>gi|365902985|ref|ZP_09440808.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
malefermentans KCTC 3548]
Length = 416
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT NVP + + + E +Q+DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 210 LLKILEGTTANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
T+SA + E +F++QV DL++FG+IPEF+GR PI
Sbjct: 270 ---TDSARNKI-------------------NENQSFMQQVVPEDLLEFGLIPEFIGRLPI 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LVRILTEPKNA+++QY L +D V+L F E+L+ +A+LA+++ TGAR
Sbjct: 308 LTALEKLSEDDLVRILTEPKNALVKQYTKLIALDGVELEFKKESLREMAKLAIDRDTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M+++PG DI V IT TV + P +
Sbjct: 368 GLRSIIEDVMRDIMFDIPGRDDIKKVIITPKTVTEKAEPEIV 409
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLLQSADYDVERAEKGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P G ++P +I N +I
Sbjct: 214 LEGTTANVPPQGG---RKHPQQEFIQIDTTNILFI 245
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKI 213
>gi|90961621|ref|YP_535537.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
salivarius UCC118]
gi|227890708|ref|ZP_04008513.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
salivarius ATCC 11741]
gi|417788215|ref|ZP_12435898.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
salivarius NIAS840]
gi|417810391|ref|ZP_12457070.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
salivarius GJ-24]
gi|122449131|sp|Q1WU81.1|CLPX_LACS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|90820815|gb|ABD99454.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
salivarius UCC118]
gi|227867646|gb|EEJ75067.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
salivarius ATCC 11741]
gi|334308392|gb|EGL99378.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
salivarius NIAS840]
gi|335349187|gb|EGM50687.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
salivarius GJ-24]
Length = 408
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 209 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V ++++ + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 269 -----------------------VDSKQEYDPDKSLMQQIIPEDLLKFGLIPEFIGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LVRILTEPKNA+I+QYQ L + D V L F +A++ IA LA+E+ TGAR
Sbjct: 306 LTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLKFEDDAVKEIAHLAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIR 241
GLR+I+E+ + D M+++P D I V IT+DTV + P ++
Sbjct: 366 GLRSIVEATMRDIMFDIPSEDNIKEVVITKDTVDGKSKPEIVK 408
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENILLKLLQNADYDVERAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 213 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 244
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
>gi|383454038|ref|YP_005368027.1| ATP-dependent protease ATP-binding subunit ClpX [Corallococcus
coralloides DSM 2259]
gi|380732367|gb|AFE08369.1| ATP-dependent protease ATP-binding subunit ClpX [Corallococcus
coralloides DSM 2259]
Length = 427
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GL+++I RR + LGFG
Sbjct: 212 LLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLEQVIERRLGGRSLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ +L++L LK VE DL+ FGMIPEF+GR PI
Sbjct: 272 A---EIQSRKQRNLSEL-------------------LKHVEPEDLLKFGMIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV IL EPKNA+ +QY+ LF +D V L F+ AL+AIA A+ +K GAR
Sbjct: 310 ITALEELDEGALVNILGEPKNALTKQYRKLFELDGVSLKFTDGALKAIASEAIRRKAGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
GLR+I+E+ +LD MYE+P V I+E+ +LK + P
Sbjct: 370 GLRSILETAMLDVMYEIPSRKTAREVLISEEVILKKSEP 408
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQRGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKIIEGTVANVPPKGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 215
>gi|399545472|ref|YP_006558780.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marinobacter
sp. BSs20148]
gi|399160804|gb|AFP31367.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marinobacter
sp. BSs20148]
Length = 427
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QV+T+NILF+ GA+ GLD++I +R +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVNTSNILFICGGAFAGLDKVIQQRSARSSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V+++++ K +K V+ DL+ FG+IPEFVGR P+
Sbjct: 273 --------------------SAEVASKDNIKSPGEIIKDVQTEDLVKFGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++ILTEPKNA+ +QYQ LF M+ V+L F EAL+A+AR A E+ TGAR
Sbjct: 313 VATLTELDEDALIQILTEPKNALTKQYQKLFEMEGVELDFREEALRAVARKAKERNTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V + E + ++ P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEQDVCKVVVDESVISGDSEPFKI 414
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>gi|333892290|ref|YP_004466165.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas sp.
SN2]
gi|332992308|gb|AEF02363.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas sp.
SN2]
Length = 425
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 143/237 (60%), Gaps = 27/237 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIEQRAQKGTGIGF 271
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA A S E+ + KQVE +DL+ +G+IPEF+GR P
Sbjct: 272 GA--------------------AVKSKSENTAQISELFKQVEPQDLVKYGLIPEFIGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ LN+E L++IL EPKNA+ +QY LF M+ V+L F +AL AIA+ A+E+KTGA
Sbjct: 312 VVTSLEELNEEALIQILKEPKNAITKQYSALFDMEDVELEFRDDALHAIAKKAMERKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
RGLR+I+E++LLD+MYE+P + D+ V I E + + P I+ D DK A
Sbjct: 372 RGLRSIVEAVLLDTMYELPSAVDVSKVVIDETVIRGESKP-----ILIYDNTDKKAA 423
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 215
>gi|254477070|ref|ZP_05090456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
R11]
gi|214031313|gb|EEB72148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
R11]
Length = 422
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I +R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ +S A E K +E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVREESDAGVGE--------TFKDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+ ILT+PKNA+++QYQ LF ++ +L F+ EAL AIA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAKRAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LLD+M+++PG + + V + E+ V + P I
Sbjct: 369 GLRSILEDILLDTMFDLPGMESVEKVVVNEEAVTSDAQPLMIHA 412
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|329934562|ref|ZP_08284603.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
griseoaurantiacus M045]
gi|329305384|gb|EGG49240.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
griseoaurantiacus M045]
Length = 428
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + KD F + V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKRELESKDQF-QDVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYE+P D+ V IT D V N P+ I
Sbjct: 372 GLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNVNPTLI 413
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|398823689|ref|ZP_10582045.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Bradyrhizobium sp. YR681]
gi|398225662|gb|EJN11928.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Bradyrhizobium sp. YR681]
Length = 423
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVMAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEVSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILEAILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|451944932|ref|YP_007465568.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
gi|451904319|gb|AGF73206.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
Length = 427
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 27/233 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT ++P + + E +Q+DT+NILF+ +GA+ GL+++IS R +K LGFG
Sbjct: 219 LLKILEGTTASIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLEKVISERVGKKGLGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E+A R EK QV DL+ FG+IPEF+GR P+
Sbjct: 279 S-QIETASDR---------------------EKLDLFAQVRPEDLVKFGLIPEFIGRLPV 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LVR+LTEPKN++++QYQ LF MD V LTF P++L IA ALE+ TGAR
Sbjct: 317 VATVDNLDRESLVRVLTEPKNSLVKQYQRLFDMDGVQLTFEPDSLNVIADHALERGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDEVDK 251
GLRAIME LL+ MY++P D+ V ITE L P +V +E +K
Sbjct: 377 GLRAIMEELLVPVMYDLPDREDVAEVIITEAAALGEGEPE----LVLTEEAEK 425
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++PN +I N +I
Sbjct: 221 KILEGTTASIPPQGG---RKHPNQEFIQLDTSNILFI 254
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>gi|367473665|ref|ZP_09473213.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. ORS 285]
gi|365274061|emb|CCD85681.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. ORS 285]
Length = 424
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISSRGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A++R A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|268678828|ref|YP_003303259.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Sulfurospirillum deleyianum DSM 6946]
gi|268616859|gb|ACZ11224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Sulfurospirillum deleyianum DSM 6946]
Length = 412
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DTTNILFV +GA++GL+ +I RR + LGF
Sbjct: 209 LLKIIEGSVVNIPPKGGRKHPNQEFIQIDTTNILFVCAGAFDGLEEIIKRRIGKNVLGF- 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
E R S +DN VE DL+ +G+IPE +GR +
Sbjct: 268 ----EQEKR---------------SKSQDN----GLFDLVEPDDLVHYGLIPELIGRLHV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +E +VRILTEPKNA+ +QYQ LF +D V+LTF EAL+A+A LA+++KTGAR
Sbjct: 305 TAKLSPITKEDMVRILTEPKNAIYKQYQKLFGIDNVELTFEKEALEAVAELAIKRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME L++D MYE+P + V +T+D V K P Y++
Sbjct: 365 GLRSIMEELMVDVMYELPELEGYEVIVTKDAVQKGEKPLYVK 406
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ + P G ++PN
Sbjct: 174 AEQGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGG---RKHPN 230
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 231 QEFIQIDTTNILFVC 245
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 176 QGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 212
>gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
mucosa ATCC 25996]
gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
mucosa ATCC 25996]
Length = 422
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E + VDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 210 LLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V ++++N + + VE DLI FG+IPE +GR P+
Sbjct: 270 A---------------------SVHSKDENADITGLFEIVEPEDLIKFGLIPELIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILTEPKNA+++QYQ LF M+ V L F EAL++IAR A+E+KTGAR
Sbjct: 309 IATLAELDEDALVNILTEPKNALVKQYQTLFGMENVQLEFEEEALRSIARQAMERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E LLD+MY++P + V I +D + K P +R
Sbjct: 369 GLRSIVERCLLDTMYQLPDLKGVTKVVIDKDVIEKGKQPKLLR 411
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 212 KLIEGTVASVPPQGG---RKHPNQEFINVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 213
>gi|414173787|ref|ZP_11428414.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia
broomeae ATCC 49717]
gi|410890421|gb|EKS38220.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia
broomeae ATCC 49717]
Length = 424
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISSRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI 409
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|410479151|ref|YP_006766788.1| ATP-dependent protease Clp, ATPase [Leptospirillum ferriphilum
ML-04]
gi|424867690|ref|ZP_18291470.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II 'C75']
gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum
rubarum]
gi|387221744|gb|EIJ76257.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II 'C75']
gi|406774403|gb|AFS53828.1| ATP-dependent protease Clp, ATPase subunit [Leptospirillum
ferriphilum ML-04]
Length = 426
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 135/223 (60%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDT+NILF+ GA+ GLD +IS+R + K LGFG
Sbjct: 211 LLKLVEGTVANVPPQGGRKHPHQEFIQVDTSNILFICGGAFIGLDNIISQRLSSKNLGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED K L V DL+ +G+IPEFVGRFP+
Sbjct: 271 A---------------------EIRTPEDRKRTGELLANVRPDDLLKYGLIPEFVGRFPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ RILTEPKNA+++Q++ LF ++KV L + AL+AIA A +KTGAR
Sbjct: 310 MAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIAHKAFIQKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++LD MYE+P ++L V +TE+T+ + P +R
Sbjct: 370 GLRAILEEVMLDLMYEIPSVQNVLEVLVTEETINNHEPPGVVR 412
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQAADYDVEKAERGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 213 KLVEGTVANVPPQGG---RKHPHQEFIQVDTSNILFIC 247
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 214
>gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way
CG']
Length = 426
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 135/223 (60%), Gaps = 22/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDT+NILF+ GA+ GLD +IS+R + K LGFG
Sbjct: 211 LLKLVEGTVANVPPQGGRKHPHQEFIQVDTSNILFICGGAFIGLDNIISQRLSSKNLGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED K L V DL+ +G+IPEFVGRFP+
Sbjct: 271 A---------------------EIRTPEDRKRTGELLANVRPDDLLKYGLIPEFVGRFPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ RILTEPKNA+++Q++ LF ++KV L + AL+AIA A +KTGAR
Sbjct: 310 MAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIAHKAFIQKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++LD MYE+P ++L V +TE+T+ + P +R
Sbjct: 370 GLRAILEEVMLDLMYEIPSVQNVLEVLVTEETINNHEPPGVVR 412
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQAADYDVEKAERGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 213 KLVEGTVANVPPQGG---RKHPHQEFIQVDTSNILFIC 247
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
aurantiaca DW4/3-1]
gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
aurantiaca DW4/3-1]
Length = 320
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NV + + + E VQVDTTNILF+ GA++G+D +I RR EK LGFG
Sbjct: 112 LLKIIEGTRANVTPRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFG 171
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R L +A E DL+ FGMIPEF+GR P+
Sbjct: 172 ARITHREERSVGELLAMA----------------------EPEDLMKFGMIPEFIGRLPM 209
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L ++ LV ILT+PKNA+++QYQ LF ++KV LTFS E+L+AIAR A+ + +GAR
Sbjct: 210 VATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAIAREAMRRNSGAR 269
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY+VP + + ITE+ + K+ P I
Sbjct: 270 GLRAIMEDAMLEVMYDVPFREGVKECKITENVITKHEPPQII 311
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
AA GIV++DE+DKI G P RDVGGEGVQQ +LK+ P G +Y
Sbjct: 77 AARGIVYIDEIDKIARKGDTP--SATRDVGGEGVQQALLKIIEGTRANVTPRGG---KKY 131
Query: 337 PNTGYIWYRYPNTGYIW 353
Y+ N +I
Sbjct: 132 NQQEYVQVDTTNILFIC 148
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI G P RDVGGEGVQQ +LK+
Sbjct: 79 RGIVYIDEIDKIARKGDTP--SATRDVGGEGVQQALLKI 115
>gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|384418135|ref|YP_005627495.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
oryzae pv. oryzicola BLS256]
gi|81311961|sp|Q5H433.1|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|123522986|sp|Q2P6Y9.1|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|353461049|gb|AEQ95328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
oryzae pv. oryzicola BLS256]
Length = 428
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKY-LGF 78
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I +R N+ +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGF 272
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V + E +E L +VE DLI FG+IPEFVGR P
Sbjct: 273 GA---------------------KVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLP 311
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++ L++ILTEPKNA+ +Q++ LF M+ V+L F +AL AIA+ AL++KTGA
Sbjct: 312 VVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKTGA 371
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
RGLR I+ES+LLD+MYE+P + + + +++V+++ + Y+
Sbjct: 372 RGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEHKSEPYL 413
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKL 216
>gi|402699100|ref|ZP_10847079.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas fragi
A22]
Length = 427
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL++++ R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVVQARSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYGKLFEMEGVDLEFRADALKAVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LLD+M+E+P S++ V I E + + P I
Sbjct: 372 GLRSILESVLLDTMFEIPSQSEVSKVVIDESVIEGKSKPLLI 413
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
>gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter
hamburgensis X14]
gi|122417675|sp|Q1QL77.1|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter
hamburgensis X14]
Length = 424
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL AIAR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAIARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|341894609|gb|EGT50544.1| hypothetical protein CAEBREN_04608 [Caenorhabditis brenneri]
Length = 520
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 141/212 (66%), Gaps = 8/212 (3%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++V V + +P V +DTTNILF++SGA++ ++ +I+RR +++ LGF
Sbjct: 297 LLKLVEGSLVKVRDPLAP----NSKVTIDTTNILFISSGAFSNIEHIIARRMDKRSLGFS 352
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + + G ++ L + + + K +D ++ + DLI FGMIPE VGRFP+
Sbjct: 353 SIKSLNEGSEQSTSEQLRDADEEIVS----KARDEMMRHCDQGDLISFGMIPELVGRFPV 408
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VPFH L++ L+ +LTEPK +++ Q + F M+ VDL FSP A++ IA +A+++KTGAR
Sbjct: 409 IVPFHCLDKTHLMSVLTEPKGSLVAQTKKFFEMENVDLKFSPGAIEKIAEMAVKRKTGAR 468
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTV 231
L++I+E ++++ YEVPGSD+ V IT + +
Sbjct: 469 ALKSIVEKAVMNAKYEVPGSDVKYVEITAENL 500
>gi|428318944|ref|YP_007116826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
nigro-viridis PCC 7112]
gi|428242624|gb|AFZ08410.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
nigro-viridis PCC 7112]
Length = 460
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 142/232 (61%), Gaps = 16/232 (6%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL MLEGT+VNVP + + + +QVDT+ ILF+ GA+ GL+
Sbjct: 227 TSITRDVSGEGVQQALLKMLEGTVVNVPPQGGRKHPYQDFIQVDTSKILFICGGAFVGLE 286
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
+++ +R +K LGF P TES S + +D + D L+QV+ DL
Sbjct: 287 KIVEQRLGKKSLGFIQP-TES-------------DSNSTLPAKDKRAAD-ILQQVQPEDL 331
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+ FG+IPEFVGR P++ L++ L++ILTEP+NA+++QYQ L MD V+L F PEAL
Sbjct: 332 VKFGLIPEFVGRIPVVTVISPLDEAALMQILTEPRNALVKQYQKLLKMDSVELEFQPEAL 391
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNT 235
+AIA+ A +KTGAR LR+I+E L+LD MYE+P D+ IT + V K +
Sbjct: 392 RAIAQEAYRRKTGARALRSILEELMLDVMYELPSRKDVAHCKITPEMVEKRS 443
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 238 SYIRGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
S RGI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 206 SAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKM 245
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
G+ V+ +L++ ++ F GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 186 GDDVENILLRLLQMSDFDVESAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKM 245
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P +I +I
Sbjct: 246 LEGTVVNVPPQGG---RKHPYQDFIQVDTSKILFIC 278
>gi|359493519|ref|XP_002264217.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Vitis vinifera]
Length = 685
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 154/237 (64%), Gaps = 24/237 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 428 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFG 487
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L + A V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 488 APV--RANMRTGGLTN-----AVVTS--------SLLESVESSDLIAYGLIPEFIGRFPI 532
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ LV++LTEPKNA+ +QY+ LF+M+ V L F+ +AL+ IA+ A+ K TGAR
Sbjct: 533 LVSLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNTGAR 592
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTVLKNTAP----SYIRGIVFLD 247
GLRA++ES+L ++MYE+P G D + V + E++V AP +RG LD
Sbjct: 593 GLRALLESILTEAMYEIPDVKTGKDRVDAVVVDEESVGSVNAPGCGGKILRGDGALD 649
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 372 GEDVESILYKLLTVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 431
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 230 TVLKNTAPSYIRGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
TV + + +G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 384 TVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 431
>gi|437849000|ref|ZP_20847210.1| ATP-dependent protease ATP-binding subunit ClpX, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 6.0562-1]
gi|435338625|gb|ELP07836.1| ATP-dependent protease ATP-binding subunit ClpX, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 6.0562-1]
Length = 365
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 153 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 212
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 213 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 251
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 252 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 311
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 312 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 356
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 120 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 156
>gi|56551845|ref|YP_162684.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260752593|ref|YP_003225486.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|384411290|ref|YP_005620655.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Zymomonas
mobilis subsp. mobilis ATCC 10988]
gi|61211394|sp|Q5NNY7.1|CLPX_ZYMMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|56543419|gb|AAV89573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
mobilis subsp. mobilis ZM4]
gi|258551956|gb|ACV74902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|335931664|gb|AEH62204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
mobilis subsp. mobilis ATCC 10988]
Length = 422
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 124/198 (62%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLDR+I+ R K +GFG
Sbjct: 210 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIADRLEGKSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L++ E DL+ FG+IPEFVGR P+
Sbjct: 270 AHVAAPDERRTGEI----------------------LQECEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+Q LVRILTEPKNA+++QYQ LF ++ L F+ +AL AIA+ +E+KTGAR
Sbjct: 308 LATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEDALAAIAKKGIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E +LLD+M+E+P
Sbjct: 368 GLRSILEGILLDTMFELP 385
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 175 AQRGIVYIDEIDKITRKSDNPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKITRKSDNPSI--TRDVSGEGVQQALLKL 213
>gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29142799|ref|NP_806141.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|213160793|ref|ZP_03346503.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425857|ref|ZP_03358607.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213646004|ref|ZP_03376057.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|289827299|ref|ZP_06545982.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|378960581|ref|YP_005218067.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|21263470|sp|Q8Z8V1.1|CLPX_SALTI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|25296072|pir||AD0558 ATP-dependent clp protease ATP-binding chain ClpX [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16501720|emb|CAD08908.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138431|gb|AAO70001.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|374354453|gb|AEZ46214.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 423
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E LV+IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|213022612|ref|ZP_03337059.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 266
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 54 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 113
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 114 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 152
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E LV+IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 153 VVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAIARKAMARKTGA 212
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 213 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 257
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 21 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 57
>gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis
alaskensis RB2256]
gi|123379515|sp|Q1GPH4.1|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis
alaskensis RB2256]
Length = 423
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 139/213 (65%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+A GA+ GL+++I R K +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFIAGGAFAGLEKIIGDRLQGKSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RRA + LKQ+E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVAGPDERRAGEV----------------------LKQIEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+IL EPKNA+++QY+ LF +++V LTF+ +AL A+A+ A+E+KTGAR
Sbjct: 309 IATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTV 231
GLR+I+E++LLD+M+++P +D++ + + +D V
Sbjct: 369 GLRSIVEAILLDTMFDLPDLTDVVEIVVDKDVV 401
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQRGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYI 352
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFI 246
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKL 214
>gi|416052900|ref|ZP_11578535.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
gi|347991692|gb|EGY33155.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
Length = 414
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKRTSVATAIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA + +E+D KQVE DL+ +G+IPEF+GR P
Sbjct: 269 GAE---------------------IKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGA
Sbjct: 308 VVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 368 RGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 410
>gi|335042769|ref|ZP_08535796.1| ATP-dependent protease Clp, ATPase subunit [Methylophaga
aminisulfidivorans MP]
gi|333789383|gb|EGL55265.1| ATP-dependent protease Clp, ATPase subunit [Methylophaga
aminisulfidivorans MP]
Length = 423
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + + E +QVDT+ ILF+ GA+ GLD++I R + +GF
Sbjct: 210 LLKLIEGTIASVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIRNRTQKGGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA + + +DNK L+ VE DLI +G+IPEFVGR P+
Sbjct: 269 --------------------SAELKSVDDNKPLSESLRTVEPEDLIQYGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV+ILTEPKNA+ +QYQ LF M+ +L F +AL+AIAR A+E+KTGAR
Sbjct: 309 VATLDELDEKALVQILTEPKNALTKQYQQLFNMENAELEFRDDALRAIARKAMERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+M+E+P +D + V I E + +P I
Sbjct: 369 GLRSIIENVLLDTMFELPSADNVSKVVIDESVIAGENSPILI 410
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AETGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTIASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ +I
Sbjct: 230 PQQEFLQVDTSKILFIC 246
>gi|331086219|ref|ZP_08335301.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406378|gb|EGG85892.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 9_1_43BFAA]
Length = 425
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 145/236 (61%), Gaps = 23/236 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++ +DTTNILF+ GA+ G++++I R ++K +GF
Sbjct: 209 LLKILEGTVASVPPQGGRKHPHQELIPIDTTNILFICGGAFEGIEKIIESRVDKKSIGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ T + + +KD L QV +DL+ FG+IPE VGR P+
Sbjct: 269 SKMTGA----------------------NEHDKDKLLSQVLPQDLVKFGLIPELVGRVPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ L+RILTEPK+A+++QYQ L +D VDL F +AL+ IA+++L +KTGAR
Sbjct: 307 TVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEIAKISLSRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
GLRAI+E++++D+M++VP D I ITE+ V P Y V L + +K+ +
Sbjct: 367 GLRAILENVMMDTMFKVPSDDKIKTCRITENVVKGLEDPEYGYERVLLPKREKVAS 422
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A +GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKIIQAADGDIERAEYGIIYIDEIDKITRKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ I N +I
Sbjct: 211 KILEGTVASVPPQGG---RKHPHQELIPIDTTNILFIC 245
>gi|224120816|ref|XP_002318424.1| predicted protein [Populus trichocarpa]
gi|222859097|gb|EEE96644.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 144/217 (66%), Gaps = 19/217 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVP+K + + RG+ +Q++T +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 196 LLKMLEGTVVNVPDKEARKHPRGDNIQINTKDILFICGGAFIDLEKTISERRQDSSIGFG 255
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R + SAA+++ + L+ E+ DL+ +G+IPEFVGRFPI
Sbjct: 256 APV--RANMRTGGVT-----SAAMTS--------SLLETAESSDLVSYGLIPEFVGRFPI 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ LV++LTEPKNA+ +QY+ LF M+ V L + AL++IA A+ K TGAR
Sbjct: 301 LVSLSALTEDQLVQVLTEPKNALGKQYRKLFQMNGVKLHVTEHALRSIAIKAITKNTGAR 360
Query: 200 GLRAIMESLLLDSMYEVP----GSDILMVHITEDTVL 232
LR+I+E++L+DSMYE+P G+DI+ + ++ +
Sbjct: 361 ALRSILENILMDSMYEIPDVRRGADIIDAVVVDEEAI 397
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 278 ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A A GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 159 AAAQQGIIYIDEVDKITKKAESVNISRDVSGEGVQQALLKM 199
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 163 QGIIYIDEVDKITKKAESVNISRDVSGEGVQQALLKM 199
>gi|289449742|ref|YP_003475568.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184289|gb|ADC90714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 440
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 141/232 (60%), Gaps = 27/232 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LE TI NVP + + E +Q+DTTNILF+ GA++GLD++I RR N K +GFG
Sbjct: 227 LLKILESTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLDKIIRRRTNRKSIGFG 286
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ SL D D L Q+E RDL+ FG+IPEF+GR PI
Sbjct: 287 AEIGSNS-----SLDD-----------------DDVLSQLEPRDLLKFGLIPEFIGRVPI 324
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V +L+Q+ L+++L+EPKN++I+QY+ L +D VDL F+PEA+ IA A+++KTGAR
Sbjct: 325 NVTLKALDQQQLIKVLSEPKNSLIKQYKYLLELDGVDLEFTPEAINEIAAAAIKRKTGAR 384
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDEVD 250
GLRAIME ++LD MYE+P DI I V P + VF E D
Sbjct: 385 GLRAIMEEIMLDVMYELPSRHDIKKCVIGASVVRHEATPEF----VFKTEAD 432
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 171 GEDVENILLRLIQNANFDIAQAQRGIIYIDEIDKITRRSDNPSI--TRDVSGEGVQQALL 228
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ S + P G ++P+ +I N +I
Sbjct: 229 KILESTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 263
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 194 RGIIYIDEIDKITRRSDNPSI--TRDVSGEGVQQALLKI 230
>gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
ORS 278]
gi|166214759|sp|A4YVM3.1|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. ORS 278]
Length = 424
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A++R A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|167628598|ref|YP_001679097.1| ATP-dependent protease ATP-binding subunit ClpX [Heliobacterium
modesticaldum Ice1]
gi|238687890|sp|B0TFI7.1|CLPX_HELMI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|167591338|gb|ABZ83086.1| ATP-dependent clp protease, ATP-binding subunit clpx
[Heliobacterium modesticaldum Ice1]
Length = 420
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+++LI R +K +GF
Sbjct: 209 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKLIMNRIGKKTMGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + G++ + + L+++ DL+ FG+IPEFVGR P+
Sbjct: 269 A---DIKGKQEKKIGET-------------------LREILPVDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRILTEPKNA+++QYQ F +D+V L F+ +AL+AIA+ A+++ TGAR
Sbjct: 307 IVTLDALDEDALVRILTEPKNALVKQYQKFFELDQVQLEFTDDALRAIAQEAIKRNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MY++P +D+ +T++ +LK P +
Sbjct: 367 GLRAILEEVMLDVMYDIPSRNDVTKCAVTKEVILKQKEPVLV 408
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 245
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 212
>gi|149916366|ref|ZP_01904886.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
AzwK-3b]
gi|149809820|gb|EDM69672.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
AzwK-3b]
Length = 420
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 125/199 (62%), Gaps = 22/199 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ VP + + + E +QVDTTNILF+ GA+ GLDR+IS+R +GFG
Sbjct: 209 LLKLMEGTVAAVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISQRGKGSAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R + K +E DL+ FG+IPEFVGR P+
Sbjct: 269 ADVRDVDARNTGEV----------------------FKDLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV ILTEPKNA+I+QYQ LF ++ LTF+ +AL AIAR A+ +KTGAR
Sbjct: 307 IATLEDLDEEALVTILTEPKNALIKQYQRLFELENAQLTFTDDALTAIARRAIARKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG 218
GLR+I+E +LL++M+E+PG
Sbjct: 367 GLRSILEDILLNTMFELPG 385
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQSSEYNVERAQRGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KLMEGTVAAVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSENPSIT--RDVSGEGVQQALLKL 212
>gi|160871875|ref|ZP_02062007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
grylli]
gi|159120674|gb|EDP46012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
grylli]
Length = 439
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E VQ+DTTNILF+ G ++GL+++I R + +GF
Sbjct: 220 LLKLLEGTVASVPLQGGRKHPNQETVQIDTTNILFICGGTFSGLEKIIRERTEKTGIGF- 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V +++D K L ++++ DLI +G+IPE +GR P+
Sbjct: 279 --------------------SADVRSKKDKKSLTTLLSRLDSEDLIKYGIIPELIGRLPV 318
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ +L++IL EPKNA+I+QY LF MD VDL F +ALQ +AR AL +KTGAR
Sbjct: 319 IATLEELDESMLIQILKEPKNALIKQYFKLFKMDNVDLEFREDALQMVARKALARKTGAR 378
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+ES+LLD+MYE+P ++ + I TV K P I
Sbjct: 379 GLRAILESVLLDTMYELPSMQNVNKIVIEASTVSKGAKPLLI 420
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQG+LK+ + P G ++
Sbjct: 185 AQLGIIYIDEIDKISRRAENPSIT--RDVSGEGVQQGLLKLLEGTV-ASVPLQG--GRKH 239
Query: 337 PNTGYIWYRYPNTGYIW 353
PN + N +I
Sbjct: 240 PNQETVQIDTTNILFIC 256
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDV GEGVQQG+LK+
Sbjct: 188 GIIYIDEIDKISRRAENPSIT--RDVSGEGVQQGLLKL 223
>gi|385840311|ref|YP_005863635.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
salivarius CECT 5713]
gi|300214432|gb|ADJ78848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
salivarius CECT 5713]
Length = 408
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 209 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V ++++ + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 269 -----------------------VDSKQEYDPDKSLMQQIIPEDLLKFGLIPEFIGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LVRILTEPKNA+I+QYQ L + D V L F +A++ IA LA+E+ TGAR
Sbjct: 306 LTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLRFEDDAVKEIAHLAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIR 241
GLR+I+E+ + D M+++P D I V IT+DTV + P ++
Sbjct: 366 GLRSIVEATMRDIMFDIPSEDNIKEVVITKDTVDGKSKPEIVK 408
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENILLKLLQNADYDVERAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 213 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 244
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
>gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
phenanthrenivorans Sphe3]
Length = 426
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 138/222 (62%), Gaps = 25/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTN+LF+ +GA+ GL+ +I R K +GFG
Sbjct: 219 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEEIIGSRSGRKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP E++ K+ D++ +V DL+ FG+IPEF+GR P+
Sbjct: 279 APLNEAS-----------------------KKVDSY-GEVMPEDLLKFGLIPEFIGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L+++ L++IL+ PKNA+++QYQ +F +D V+L F AL AIA ALE+ TGAR
Sbjct: 315 ITTVSNLDRDALIQILSTPKNALVKQYQKMFQIDGVELVFDETALNAIADQALERGTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL M+++P D+ V ITED VLK P+ I
Sbjct: 375 GLRAIMEEVLLPVMFDLPSREDVASVVITEDVVLKGAEPTMI 416
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLIQAADYDVKKAEQGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 221 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNVLFI 254
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 186 QGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKI 222
>gi|365888481|ref|ZP_09427243.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. STM 3809]
gi|365335846|emb|CCD99774.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. STM 3809]
Length = 380
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 166 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 224
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 225 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 263
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A++R A+E+KTGAR
Sbjct: 264 VATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGAR 323
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 324 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 365
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 110 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 167
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 168 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 202
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 133 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 169
>gi|365879288|ref|ZP_09418720.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. ORS 375]
gi|365292813|emb|CCD91251.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. ORS 375]
Length = 424
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A++R A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|418464910|ref|ZP_13035849.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756865|gb|EHK91022.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 413
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKRTSVATAIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA + +E+D KQVE DL+ +G+IPEF+GR P
Sbjct: 269 GA---------------------EIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGA
Sbjct: 308 VVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 368 RGLRSIIEGILLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 410
>gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix
cholodnii SP-6]
gi|238689116|sp|B1Y6H2.1|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix
cholodnii SP-6]
Length = 424
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + +Q+DTTNILF+ GA++GL+++I+ R + +GFG
Sbjct: 216 LLKLVEGTMASVPPQGGRKHPNQDFLQIDTTNILFICGGAFDGLEKVIANRSEKSGIGFG 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + +S R+ S +Q+E DLI FG+IPE VGR P+
Sbjct: 276 A-TVKSKAERSVS---------------------EVFRQIEPEDLIKFGIIPELVGRLPV 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L ++ LV+ILTEPKNA+++QYQ LF MD V+L P L AIA+ AL++KTGAR
Sbjct: 314 IATLGELTEDALVQILTEPKNALLKQYQRLFGMDGVELEIRPSGLAAIAQKALKRKTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+I+E L+D+M+E+P D + V + E+T+ NT P
Sbjct: 374 GLRSIVEQALMDTMFELPAMDGVAKVVVDENTIEDNTMP 412
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 181 AQRGIVYIDEIDKISRKADNPSIT--RDVSGEGVQQALLKLVEGTMASVPPQGG---RKH 235
Query: 337 PNTGYIWYRYPNTGYIW 353
PN ++ N +I
Sbjct: 236 PNQDFLQIDTTNILFIC 252
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 183 RGIVYIDEIDKISRKADNPSIT--RDVSGEGVQQALLKL 219
>gi|260913094|ref|ZP_05919576.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
gi|260632681|gb|EEX50850.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
Length = 412
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 143/222 (64%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R ++G G
Sbjct: 208 LLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKVIEKRV---HVGSG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++D +QVE DL+ FG+IPEF+GR P+
Sbjct: 265 I-----------------GFSAEVKGKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E LV+ILTEPKNA+I+QYQ LF ++ V L F+ EAL A+A+ ALE+KTGAR
Sbjct: 308 VAPLAELDEEALVKILTEPKNALIKQYQALFGLEDVALEFTQEALIAMAKKALERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LLD+MY++P ++ V + E T+ + AP+ +
Sbjct: 368 GLRSIVEAVLLDTMYDLPSLVNLEKVLVEERTITEKQAPTLV 409
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVP 297
+GI+++DE+DKI P I RDV GEGVQQ +LK+ + ++P
Sbjct: 175 KGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALLKLIE------------GTVASIP 220
Query: 298 GIHQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ ML+V TS + +
Sbjct: 221 P-----QGGRKHPQQEMLRVDTSKILF 242
>gi|67923460|ref|ZP_00516937.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
gi|67854695|gb|EAM49977.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
Length = 444
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 24/218 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + + +Q+DT+NILF+ GA+ GLDR+I +R +K +GF
Sbjct: 232 LLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDRVIEQRIGKKSMGFV 291
Query: 80 APST-ESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
P +S R A L +++VE DL+ FGMIPEFVGR P
Sbjct: 292 RPGEGQSKEERTADL----------------------MQRVEPDDLVKFGMIPEFVGRIP 329
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L +E L+ ILT+P+NA+++QYQ L MD V+L FSPEA++AIA+ A +KTGA
Sbjct: 330 VMAALNPLTEETLIAILTKPRNALVKQYQKLLNMDNVELEFSPEAVKAIAQEAYRRKTGA 389
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNT 235
R LR I+E L+LD MYE+P D+ IT + V K +
Sbjct: 390 RALRGIVEELMLDVMYELPSRKDVQKCMITGEMVEKRS 427
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ +A GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 176 GEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 233
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P I N +I
Sbjct: 234 KMLEGTVANVPPQGG---RKHPYQDCIQIDTSNILFIC 268
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 199 RGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKM 235
>gi|254382768|ref|ZP_04998125.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
gi|194341670|gb|EDX22636.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
Length = 428
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 23/230 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GF
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFA 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R+ + +NQ ++V DL+ FGMIPEF+GR P+
Sbjct: 274 ATI------RSKREIEASNQ----------------FQEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 ITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
GLRAIME +L+ MYEVP D+ V IT D V N P+ + IV D+
Sbjct: 372 GLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNVNPTLVPRIVPKDQ 421
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|365895291|ref|ZP_09433412.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. STM 3843]
gi|365424010|emb|CCE05954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
sp. STM 3843]
Length = 424
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|358062800|ref|ZP_09149438.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
hathewayi WAL-18680]
gi|356698983|gb|EHI60505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
hathewayi WAL-18680]
Length = 433
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E++Q+DTTNILF+ GA++GL++++ R N +GF
Sbjct: 210 LLKILEGTVASVPPQGGRKHPHQELLQIDTTNILFICGGAFDGLEKIVENRLNVSSIGFN 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ D+ ++ +N + D LK+V +DL FG+IPEF+GR P+
Sbjct: 270 S--------------DVLDR--------NNMDIDGLLKKVLPQDLTKFGLIPEFIGRVPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L +E LVRIL+EPKNA+ +QYQ LF +D V L F+ +AL IA+LA E+KTGAR
Sbjct: 308 TVSLDMLTEEALVRILSEPKNALTKQYQRLFELDDVKLEFTQDALLEIAKLASERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES+++D MYEVP S+I + IT++ V + P +
Sbjct: 368 GLRSIMESIMMDLMYEVPSDSNIGICTITKELVDGSGEPEIV 409
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENILLKLIQAADYDISKAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P+ + N +I
Sbjct: 214 LEGTVASVPPQGG---RKHPHQELLQIDTTNILFIC 246
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 178 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 213
>gi|71907347|ref|YP_284934.1| ATP-dependent protease ATP-binding subunit ClpX [Dechloromonas
aromatica RCB]
gi|123774411|sp|Q47FB7.1|CLPX_DECAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|71846968|gb|AAZ46464.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB]
Length = 420
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT ++P + + + VQVDTTNILF+ GA+ GL+++I R +GFG
Sbjct: 209 LLKLIEGTTASIPPQGGRKHPNQDFVQVDTTNILFICGGAFAGLEKVIQSRSERGGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V +++D K L E DLI FG+IPE +GR P+
Sbjct: 269 A---------------------EVKSKDDGKAVGKILLDAEPEDLIKFGLIPELIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L + LV+ILTEPKNA+++QYQ LF+M+ V+L P AL AIA+ AL +KTGAR
Sbjct: 308 VATLQELEESALVQILTEPKNALVKQYQKLFSMEDVELEIRPTALSAIAKKALARKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLD+MYE+PG + + V I E+T+ +T P I
Sbjct: 368 GLRSILEHALLDTMYELPGMESVEKVVIDENTITGDTPPLLI 409
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 QGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 212
>gi|417363849|ref|ZP_12136956.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353599187|gb|EHC55427.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 436
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 224 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 283
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 284 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 322
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 323 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 382
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 383 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 427
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 191 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 227
>gi|344999626|ref|YP_004802480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SirexAA-E]
gi|344315252|gb|AEN09940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
sp. SirexAA-E]
Length = 431
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 273 A---------------------TIRSKLEIQASDQF-QEVMPEDLVKFGMIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 311 LTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ +
Sbjct: 371 GLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNVNPTLV 412
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
>gi|218189491|gb|EEC71918.1| hypothetical protein OsI_04712 [Oryza sativa Indica Group]
Length = 630
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 140/211 (66%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
V+ DV LL +LEGT+V++PEK S + R E +Q+DT +ILF+ GA+ L++
Sbjct: 362 VSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKT 421
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP + R++ + D S+ L+ VE+ DL
Sbjct: 422 ISERRQDSSIGFGAPIRTNM--RSSEVTDPMVTSS-------------LLESVESGDLAR 466
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GR PILV +LN++ LV++LTEPKN++ +QY+ +F+++KV L F+ AL+
Sbjct: 467 YGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRI 526
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
+A+ A+ + TGARGLRAI+ESLLL++MYE+P
Sbjct: 527 VAKKAIARNTGARGLRAILESLLLEAMYEIP 557
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 342 QGIVYIDEVDKITKKAESVNVSRDVSGEGVQQALLKI 378
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 340 AQQGIVYIDEVDKITKKAESVNVSRDVSGEGVQQALLKI 378
>gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 420
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 134/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD+LI+ R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKLIAGRDTGAGIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R+ L L +E DLI FG+IPEFVGR P+
Sbjct: 269 ADVRDPDDRKIGEL----------------------LGSLEPEDLIKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LVRILTEPKNA+++QY+ LF MD V L F +AL+A+A+ A+ +KTGAR
Sbjct: 307 IATLEDLDEEALVRILTEPKNALVKQYEKLFEMDDVRLEFRDDALRAVAQKAIARKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAP 237
GLR+IME++L++ M+++P S DI V I D V P
Sbjct: 367 GLRSIMENILMEPMFDIPTSGDIEEVVINGDVVEGGAQP 405
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKISRKADNPSI--TRDVSGEGVQQALLKI 212
>gi|418055592|ref|ZP_12693646.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hyphomicrobium
denitrificans 1NES1]
gi|353209870|gb|EHB75272.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hyphomicrobium
denitrificans 1NES1]
Length = 415
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++ISRR +GF
Sbjct: 205 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISRRGKGSSIGFS 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T RR + L+ VE DL+ FG+IPEF+GR P+
Sbjct: 265 AKVTGPDERRTGDI----------------------LRGVEPEDLLKFGLIPEFIGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LT + +AL+AI+R A+E+KTGAR
Sbjct: 303 IATLEDLDEAALVQILTEPKNAIVKQYQRLFEMEDVKLTITLDALKAISRKAIERKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+IME +LLD+MY++P
Sbjct: 363 GLRSIMEGILLDTMYDLP 380
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 207 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 241
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 172 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 208
>gi|406038260|ref|ZP_11045615.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
ursingii DSM 16037 = CIP 107286]
Length = 436
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +Q+DT NILF+ GA++GL++++ +R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFSGLEKIVQQRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVKNKDESKKLAELFRQVEPTDLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 310 IATLEELDEAALMQILTEPKNALTRQYQYLFNMEDVDLVFEDAALRAVAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MYE+P D+ V I E + + P +
Sbjct: 370 GLRSILENVLLETMYELPSRDDVGTVIINEAVITEGAQPVF 410
>gi|403237696|ref|ZP_10916282.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus sp.
10403023]
Length = 420
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGKKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S V E D K + L + DL+ FG+IPEF+GR P+
Sbjct: 268 --------------------SNIVEEELDQK---SLLSKSLPEDLLKFGLIPEFIGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV ILT+PKNA+++QYQ + +D+V+L F +AL IA+ A+E+KTGAR
Sbjct: 305 IASLEPLDEGALVEILTKPKNALVKQYQKMLELDEVELDFEDDALIEIAKKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+++P DI IT +TVLKNT+P +
Sbjct: 365 GLRSIIEGIMLDVMFDLPSRDDIKKCIITAETVLKNTSPKLL 406
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|392375229|ref|YP_003207062.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
Methylomirabilis oxyfera]
gi|258592922|emb|CBE69231.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
Methylomirabilis oxyfera]
Length = 415
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 134/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E +QVDTTNILF+ GA+ GL++ I R +K +GFG
Sbjct: 208 LLKILEGTVANVPPQGGRKHPQQEYLQVDTTNILFICGGAFVGLEKAIEHRTGQKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A GRR + L L V+ DL+ +G+IPE VGR P+
Sbjct: 268 AEIQARRGRRISEL----------------------LAHVQPEDLLRYGLIPELVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L+++ LVRIL EPKNA+++QYQ F + V LTF+ +A+ A+A+ A +++TGAR
Sbjct: 306 MAVVHELDEKALVRILVEPKNALLRQYQRFFDFEHVKLTFTDDAISAVAQEAAKRQTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++LD MYE+P S I I +TV++ AP
Sbjct: 366 GLRAILEEIMLDIMYEIPSQSGIAECIINRETVVERKAP 404
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ +A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENIILRLLQVADYDVERAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P Y+ N +I
Sbjct: 210 KILEGTVANVPPQGG---RKHPQQEYLQVDTTNILFIC 244
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 211
>gi|442771748|gb|AGC72426.1| ATP-dependent Clp protease ATP-binding subunit ClpX [uncultured
bacterium A1Q1_fos_2037]
Length = 414
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTNILF+ GA+ GLD I +R N+K +GFG
Sbjct: 210 LLKILEGTVCNVPPQGGRKHPHQEFLQIDTTNILFICGGAFVGLDEHIEKRLNQKTMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ S +E +K+ L++ D+I FGMIPEFVGR +
Sbjct: 270 A--------------DIK------SKKEQSKQNP--LEKALPEDIIKFGMIPEFVGRLAV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LVRIL EPKN++++QYQ +F + V+L FS EAL A+A+ AL++ GAR
Sbjct: 308 MASLEQLDEESLVRILKEPKNSLVRQYQTMFEFEDVELRFSDEALHAVAKEALKRNVGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAP 237
GLR I+E L+LD MY +P +I ITEDTV++ + P
Sbjct: 368 GLRIILEELMLDLMYTIPSQREIQECVITEDTVVRRSQP 406
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 283 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNT 339
GIV++DEVDKI G P I RDV GEGVQQ +LK+ + P G ++P+
Sbjct: 178 GIVYIDEVDKIARKGENPSI--TRDVSGEGVQQALLKILEGTVCNVPPQGG---RKHPHQ 232
Query: 340 GYIWYRYPNTGYIW 353
++ N +I
Sbjct: 233 EFLQIDTTNILFIC 246
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 234 NTAPSYIRGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
N RGIV++DEVDKI G P I RDV GEGVQQ +LK+
Sbjct: 170 NDKEKTQRGIVYIDEVDKIARKGENPSI--TRDVSGEGVQQALLKI 213
>gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 2_1_46FAA]
gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Lachnospiraceae bacterium 2_1_46FAA]
Length = 415
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 135/223 (60%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI +VP + + E++Q+DTTNILF+ GA+ G+D++I R ++K +GF
Sbjct: 207 LLKIIEGTIASVPPQGGRKHPHQELIQIDTTNILFICGGAFEGIDKIIETRIDKKSIGFN 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AE+ + D L QV +DL+ FG+IPE VGR P+
Sbjct: 267 AEI----------------------AEKHEYDIDRLLGQVLPQDLVKFGLIPELVGRVPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L++E L+RILTEPK+A+++QYQ L +D V+L F EAL IA+ +L +KTGAR
Sbjct: 305 TVSLEMLDEEALIRILTEPKSAIVKQYQKLLELDGVELVFDKEALVEIAKTSLARKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIR 241
GLRAIME +++D+MY VP D I IT++ V P Y R
Sbjct: 365 GLRAIMEKIMMDTMYHVPSDDSIKYCRITKEVVQGIGEPVYER 407
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A +GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKIIQAADGDIQRAEYGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ I N +I
Sbjct: 209 KIIEGTIASVPPQGG---RKHPHQELIQIDTTNILFIC 243
>gi|108804373|ref|YP_644310.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrobacter
xylanophilus DSM 9941]
gi|108765616|gb|ABG04498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rubrobacter
xylanophilus DSM 9941]
Length = 420
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + +Q+DT NILF+ GA+ GL+ +I +R ++ +GF
Sbjct: 206 LLKILEGTVASVPPQGGRKHPHQDFLQIDTKNILFICGGAFGGLEDIIRQRIGKRSIGFS 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ RR EED+ D L+ V+ DL+ +G+IPEFVGR P+
Sbjct: 266 S----GLDRRL---------------EEDS---DEILRHVQPEDLLKYGLIPEFVGRLPV 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ HSL + LVRILTEPKNA+++QY+ +F DKVDLTF+ EAL AIA ALE+ TGAR
Sbjct: 304 ISTLHSLQERDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIAEQALERGTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E+ LL +MYE+P SD+ + DTV + P+ +
Sbjct: 364 GLRSILEAALLPTMYELPSRSDVTKCVVDADTVREGVRPALV 405
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 150 GEDVENILLKLIQAADFDVKKAETGIIYIDEIDKIARKADNPSI--TRDVSGEGVQQALL 207
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ ++ N +I
Sbjct: 208 KILEGTVASVPPQGG---RKHPHQDFLQIDTKNILFIC 242
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 GIIYIDEIDKIARKADNPSI--TRDVSGEGVQQALLKI 209
>gi|146328686|ref|YP_001209153.1| ATP-dependent protease ATP-binding subunit ClpX [Dichelobacter
nodosus VCS1703A]
gi|146232156|gb|ABQ13134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dichelobacter
nodosus VCS1703A]
Length = 425
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 140/223 (62%), Gaps = 21/223 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI VP + + EM VDT NILF+ GA++GL+++I++R ++ +GF
Sbjct: 218 LLKLVEGTIAAVPPHGGRKHPQQEMTHVDTRNILFICGGAFDGLEKIIAKRTDKGSIGFN 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A R SL + A LKQVE DL+ FG+IPEFVGR PI
Sbjct: 278 A-----AVRGKNSLVEGAEAQ--------------LLKQVEPEDLVKFGLIPEFVGRLPI 318
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++ LVRILTEPKNA+++Q+ +F+ ++VDL F AL AIA+ A+ +KTGAR
Sbjct: 319 VTLLDTLDESALVRILTEPKNAIVRQFSKIFSYEQVDLEFEDAALTAIAQKAIARKTGAR 378
Query: 200 GLRAIMESLLLDSMYEVP--GSDILMVHITEDTVLKNTAPSYI 240
GLR+I+E LLLD+M+E+P +D+ + I+ + V T P+ I
Sbjct: 379 GLRSIVEQLLLDTMFELPTTSTDVEKIVISAENVNDGTQPTKI 421
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 185 RGIIYIDEIDKIARKGDSASITRDVSGEGVQQALLKL 221
>gi|402822002|ref|ZP_10871511.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas sp.
LH128]
gi|402264483|gb|EJU14337.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas sp.
LH128]
Length = 420
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 130/198 (65%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIADRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPDKRRVGEL----------------------LQKAEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L+ E LV+IL EPKNA+I+QY LF ++ V+LTF+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 IATLNDLDIEALVKILKEPKNALIKQYARLFELEDVELTFTDDALEAIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E LLLD+M+++P
Sbjct: 369 GLRSIVEGLLLDTMFDLP 386
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASDYNVEKAQQGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ P G ++P ++ N +I
Sbjct: 213 KLMEGTTASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 QGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKL 214
>gi|115441503|ref|NP_001045031.1| Os01g0886600 [Oryza sativa Japonica Group]
gi|56784314|dbj|BAD82240.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
Japonica Group]
gi|56785236|dbj|BAD82124.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
Japonica Group]
gi|113534562|dbj|BAF06945.1| Os01g0886600 [Oryza sativa Japonica Group]
Length = 496
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 139/211 (65%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
V+ DV LL +LEGT+V++PEK S + R E +Q+DT +ILF+ GA+ L++
Sbjct: 228 VSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKT 287
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP R++ + D S+ L+ VE+ DL
Sbjct: 288 ISERRQDSSIGFGAPI--RINMRSSEVTDPMVTSS-------------LLESVESGDLAR 332
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GR PILV +LN++ LV++LTEPKN++ +QY+ +F+++KV L F+ AL+
Sbjct: 333 YGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRI 392
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
+A+ A+ + TGARGLRAI+ESLLL++MYE+P
Sbjct: 393 VAKKAIARNTGARGLRAILESLLLEAMYEIP 423
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 208 QGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKI 244
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 206 AQQGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKI 244
>gi|261868694|ref|YP_003256616.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769955|ref|ZP_11484570.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D17P-2]
gi|416076386|ref|ZP_11585467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|416106801|ref|ZP_11590050.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|444337396|ref|ZP_21151380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
gi|444345797|ref|ZP_21153803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|261414026|gb|ACX83397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|348004990|gb|EGY45480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|348006003|gb|EGY46469.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|348656988|gb|EGY74585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542530|gb|ELT52855.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|443546980|gb|ELT56559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
Length = 413
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKRTSVATAIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA + +E+D KQVE DL+ +G+IPEF+GR P
Sbjct: 269 GAE---------------------IKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGA
Sbjct: 308 VVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 368 RGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 410
>gi|387121381|ref|YP_006287264.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|415764271|ref|ZP_11482328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D17P-3]
gi|416031732|ref|ZP_11572600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|416045631|ref|ZP_11575470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|416057701|ref|ZP_11580314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype e str.
SCC393]
gi|429733791|ref|ZP_19267845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans Y4]
gi|347995169|gb|EGY36379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|348000484|gb|EGY41266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype e str.
SCC393]
gi|348001110|gb|EGY41868.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|348654308|gb|EGY69942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D17P-3]
gi|385875873|gb|AFI87432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|429154179|gb|EKX96925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans Y4]
Length = 410
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 206 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKRTSVATAIGF 265
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA + +E+D KQVE DL+ +G+IPEF+GR P
Sbjct: 266 GAE---------------------IKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLP 304
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGA
Sbjct: 305 VVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGA 364
Query: 199 RGLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 365 RGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 407
>gi|262380155|ref|ZP_06073310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens SH164]
gi|262298349|gb|EEY86263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens SH164]
Length = 438
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT+N+LF+ GA++GL++++ R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTSNVLFICGGAFSGLEKIVQHRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVKSKDETKKLAELFRQVEPADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++ILTEPKNA+ +QYQ LF M+ VDL F AL+ +A+ ALE+ TGAR
Sbjct: 310 IATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRTVAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 370 GLRSILENVLLETMYDLPSRNDVGTVVINEAVINDGAEPEY 410
>gi|339442437|ref|YP_004708442.1| hypothetical protein CXIVA_13740 [Clostridium sp. SY8519]
gi|338901838|dbj|BAK47340.1| hypothetical protein CXIVA_13740 [Clostridium sp. SY8519]
Length = 422
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 133/213 (62%), Gaps = 23/213 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + + E++Q+DTTNILF+ GA+ G+D++I R ++ +GF
Sbjct: 212 LLKILEGTIASVPPQGGRKHPQQELIQIDTTNILFICGGAFEGIDKIIEARMDKSSIGFN 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R +++D+ L Q +D + FGMIPEFVGR P+
Sbjct: 272 A---EVYDRNDVNISDV-------------------LAQALPQDFVKFGMIPEFVGRVPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V +L+QE LVRIL EPKN++I+QYQ LF +D V+LTF A++AIA L +KTGAR
Sbjct: 310 TVSLDALDQEALVRILKEPKNSLIRQYQKLFELDGVELTFDDGAVEAIAEKTLARKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTV 231
GLRAIMES+++D M+ +P D I IT + +
Sbjct: 370 GLRAIMESVMMDLMFRIPSDDSITACRITRECI 402
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ +LK+ A +GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 156 GEDVENILLKIIQAADYDIEKAQYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKI 215
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P I N +I
Sbjct: 216 LEGTIASVPPQGG---RKHPQQELIQIDTTNILFIC 248
>gi|416405033|ref|ZP_11687844.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Crocosphaera
watsonii WH 0003]
gi|357261368|gb|EHJ10639.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Crocosphaera
watsonii WH 0003]
Length = 397
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 24/218 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + + +Q+DT+NILF+ GA+ GLDR+I +R +K +GF
Sbjct: 185 LLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDRVIEQRIGKKSMGFV 244
Query: 80 APST-ESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
P +S R A L +++VE DL+ FGMIPEFVGR P
Sbjct: 245 RPGEGQSKEERTADL----------------------MQRVEPDDLVKFGMIPEFVGRIP 282
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L +E L+ ILT+P+NA+++QYQ L MD V+L FSPEA++AIA+ A +KTGA
Sbjct: 283 VMAALNPLTEETLIAILTKPRNALVKQYQKLLNMDNVELEFSPEAVKAIAQEAYRRKTGA 342
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNT 235
R LR I+E L+LD MYE+P D+ IT + V K +
Sbjct: 343 RALRGIVEELMLDVMYELPSRKDVQKCMITGEMVEKRS 380
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 152 RGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKM 188
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ +A GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 129 GEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 186
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P I N +I
Sbjct: 187 KMLEGTVANVPPQGG---RKHPYQDCIQIDTSNILFIC 221
>gi|184155096|ref|YP_001843436.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
fermentum IFO 3956]
gi|227514779|ref|ZP_03944828.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
ATCC 14931]
gi|260663639|ref|ZP_05864528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
fermentum 28-3-CHN]
gi|183226440|dbj|BAG26956.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
fermentum IFO 3956]
gi|227086888|gb|EEI22200.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
ATCC 14931]
gi|260551865|gb|EEX24980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
fermentum 28-3-CHN]
Length = 416
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +QVDT NILF+ GA++G++ ++ R +K +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E D EK+ L+ V DL+ FG+IPEF+GR P+
Sbjct: 270 TDSKEI---------------------NDVTEKN-ILQHVIPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LVRILTEPKNA+++QYQ L +D +L F+ ALQA+A++A+++ TGAR
Sbjct: 308 MTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMAKMAIDRNTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M+++P D++ V I ++ V K+TAP Y+
Sbjct: 368 GLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKHTAPEYV 409
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENIILKLLQAADFDIDRAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQVDTKNILFI 245
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
>gi|222619642|gb|EEE55774.1| hypothetical protein OsJ_04339 [Oryza sativa Japonica Group]
Length = 572
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 140/211 (66%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
V+ DV LL +LEGT+V++PEK S + R E +Q+DT +ILF+ GA+ L++
Sbjct: 155 VSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKT 214
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP + +S+ V+ D + L+ VE+ DL
Sbjct: 215 ISERRQDSSIGFGAP------------IRINMRSSEVT---DPMVTSSLLESVESGDLAR 259
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GR PILV +LN++ LV++LTEPKN++ +QY+ +F+++KV L F+ AL+
Sbjct: 260 YGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRI 319
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
+A+ A+ + TGARGLRAI+ESLLL++MYE+P
Sbjct: 320 VAKKAIARNTGARGLRAILESLLLEAMYEIP 350
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
A GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 133 AQQGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKI 171
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 135 QGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKI 171
>gi|260438108|ref|ZP_05791924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
crossotus DSM 2876]
gi|292809589|gb|EFF68794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
crossotus DSM 2876]
Length = 436
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 141/220 (64%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E++Q+DTTNILF+ GA++GL+++I R ++K +GF
Sbjct: 214 LLKILEGTMASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLEKIIENRMDQKSIGFN 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + A++ + E F +V +DL+ FG+IPEFVGR P+
Sbjct: 274 S----------------------IIADKTDFEIGEFFDKVLPQDLVKFGLIPEFVGRIPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ LV+I+TEPKNA+++QY+ LF D+V L + EA++AIA+ +LE+KTGAR
Sbjct: 312 TVALDMLDEDALVKIITEPKNALVKQYRKLFEYDEVQLEITEEAVRAIAKKSLERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPS 238
GLR+IME ++D MYE+P D I +TE+T+ + P
Sbjct: 372 GLRSIMEKAMMDVMYEIPSDDNISKCIVTENTITGDGKPE 411
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 158 GEDVENILLKLIQAADYDIDKAEKGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 217
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P I N +I
Sbjct: 218 LEGTMASVPPQGG---RKHPQQELIQIDTTNILFIC 250
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 181 KGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKI 217
>gi|357413453|ref|YP_004925189.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptomyces
flavogriseus ATCC 33331]
gi|320010822|gb|ADW05672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
flavogriseus ATCC 33331]
Length = 432
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKLEIQASDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 LTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ +
Sbjct: 372 GLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNVNPTLV 413
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|416084919|ref|ZP_11587102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|348010288|gb|EGY50347.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
Length = 413
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKN-EKYLGF 78
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKRTSVATAIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA + +E+D KQVE DL+ +G+IPEF+GR P
Sbjct: 269 GA---------------------EIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGA
Sbjct: 308 VVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
RGLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 368 RGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 410
>gi|182438718|ref|YP_001826437.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326779367|ref|ZP_08238632.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
griseus XylebKG-1]
gi|238688994|sp|B1VXA8.1|CLPX_STRGG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|178467234|dbj|BAG21754.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326659700|gb|EGE44546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
griseus XylebKG-1]
Length = 432
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKLEIQASDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 LTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ +
Sbjct: 372 GLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNVNPTLV 413
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|168031008|ref|XP_001768014.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680856|gb|EDQ67289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 143/218 (65%), Gaps = 21/218 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+VNVPEK + + RGE +Q+DT +ILF+ GA+ L++ I+ RK + +GFG
Sbjct: 179 LLKMLEGTVVNVPEKGARKHPRGEHIQIDTKDILFICGGAFVELEKSIAERKQDSSIGFG 238
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L D AA+++ + L+ VE+ DLI +G+IPEF+GRFP+
Sbjct: 239 APV--RANMRGNKLID-----AAITS--------SLLETVESSDLISYGLIPEFIGRFPV 283
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LV++LTEP+NA+ +QY+ +F M+ V L ++ L+ IA+ A+ K TGAR
Sbjct: 284 IVSLSALDEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEGGLRRIAQKAVVKNTGAR 343
Query: 200 GLRAIMESLLLDSMYEVP------GSDILMVHITEDTV 231
GLR+ +E++L ++MY+VP G + V + ED V
Sbjct: 344 GLRSTLETVLTEAMYQVPDSISNEGEQVDAVVLDEDAV 381
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 317
GE V+ + K+ A F GI+++DEVDKI + RDV GEGVQQ +LK+
Sbjct: 123 GEDVESILYKLLVEAEFNVLAAQQGIIYIDEVDKITKKAESKNISRDVSGEGVQQALLKM 182
>gi|449447519|ref|XP_004141515.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Cucumis sativus]
gi|449510687|ref|XP_004163734.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Cucumis sativus]
Length = 699
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 143/211 (67%), Gaps = 15/211 (7%)
Query: 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRL 66
++ DV LL MLEGTIVNVPEK S + RG+ +Q+DT +ILF+ GA+ L++
Sbjct: 431 ISRDVSGEGVQQALLKMLEGTIVNVPEKGSRKHPRGDNIQIDTKDILFICGGAFVDLEKT 490
Query: 67 ISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLID 126
IS R+ + +GFGAP A++ SAAV++ + L+ VE+ DLI
Sbjct: 491 ISDRRQDSSIGFGAPVR-------ANMRIGGATSAAVTS--------SLLESVESSDLIA 535
Query: 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQA 186
+G+IPEF+GRFPILV +L ++ LV++LTEPKNA+ +QY+ LF M+KV L ++ +AL+
Sbjct: 536 YGLIPEFIGRFPILVSLLALTEDQLVQVLTEPKNALGKQYKKLFGMNKVKLHYTEKALRM 595
Query: 187 IARLALEKKTGARGLRAIMESLLLDSMYEVP 217
IA+ A+ K TGARGLRAI+ES+L ++MYE+P
Sbjct: 596 IAKKAIAKNTGARGLRAILESILTEAMYEIP 626
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ A A F G++++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 388 GEDVESILYKLLAAAEFNVQAAQQGMIYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 447
>gi|442319290|ref|YP_007359311.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus
stipitatus DSM 14675]
gi|441486932|gb|AGC43627.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus
stipitatus DSM 14675]
Length = 427
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 130/219 (59%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GLD++I RR + LGFG
Sbjct: 212 LLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRLGGRSLGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R L LK VE DL+ FGMIPEF+GR PI
Sbjct: 272 ADIQSKKQRNLTEL----------------------LKHVEPEDLLKFGMIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ IL +PKNA+ +QY+ LF +D V L F+ AL+AIA A+ +K GAR
Sbjct: 310 ITALEELDEPALINILNQPKNALTKQYRKLFELDGVALKFTDGALKAIASEAIRRKAGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES +LD MYE+P + V I+E+ +LK + P
Sbjct: 370 GLRSILESAMLDVMYEIPSRKTVREVLISEEVILKKSEP 408
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQRGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKIIEGTVANVPPKGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTTNILFIC 248
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 215
>gi|438047873|ref|ZP_20856089.1| ATP-dependent protease ATP-binding subunit ClpX, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
gi|435319477|gb|ELO92304.1| ATP-dependent protease ATP-binding subunit ClpX, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
Length = 419
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|254448887|ref|ZP_05062343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
proteobacterium HTCC5015]
gi|198261577|gb|EDY85866.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
proteobacterium HTCC5015]
Length = 426
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GLD++I R + +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSEKGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V EED+ L +VE DL+ +G+IPEF+GR P+
Sbjct: 271 --------------------AAEVKTEEDDLAIGQLLHEVEPEDLVKYGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L +E L+ ILT+PKNA+I+Q++ LF M+ V++ F AL AIA+ A+E+KTGAR
Sbjct: 311 VATLEELGEEALIEILTQPKNAIIKQFKYLFEMEGVEIEFLDAALSAIAQKAMERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR I+E++LLD+MYEVP + + + +D V++ + YI
Sbjct: 371 GLRTILENILLDTMYEVPSMESVSKVVIDDAVIRGESEPYI 411
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKVSRKADNPSI--TRDVSGEGVQQALLKL 215
>gi|365861629|ref|ZP_09401395.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
W007]
gi|364008917|gb|EHM29891.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
W007]
Length = 432
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKLEIQASDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 LTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ +
Sbjct: 372 GLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNVNPTLV 413
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|159039406|ref|YP_001538659.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
arenicola CNS-205]
gi|189044146|sp|A8M1K7.1|CLPX_SALAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|157918241|gb|ABV99668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salinispora
arenicola CNS-205]
Length = 429
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 132/222 (59%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLD++I R GFG
Sbjct: 212 LLKMLEGTVANVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RA S + D QV D++ FG+IPEF+GR P+
Sbjct: 272 AR------LRAVS----------------ERSTDDTFSQVMPEDMLKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++ LVRILTEP+NA+++QYQ LF +D V+L F AL+A+A A+ + TGAR
Sbjct: 310 ITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAVADQAMLRGTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP + D V IT + VL+N P+ +
Sbjct: 370 GLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENVNPTIV 411
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENILLKLIQAADYDIKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 214 KMLEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFIC 248
>gi|7594817|dbj|BAA94669.1| ATPase subunit [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 423
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|16763830|ref|NP_459445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|56414395|ref|YP_151470.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62179061|ref|YP_215478.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161615357|ref|YP_001589321.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167990433|ref|ZP_02571533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168231438|ref|ZP_02656496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168237564|ref|ZP_02662622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168261114|ref|ZP_02683087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168465543|ref|ZP_02699425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168818939|ref|ZP_02830939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194445635|ref|YP_002039692.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194451482|ref|YP_002044484.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194471272|ref|ZP_03077256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194734820|ref|YP_002113480.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197250772|ref|YP_002145430.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197263118|ref|ZP_03163192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197363315|ref|YP_002142952.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198242558|ref|YP_002214403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200390026|ref|ZP_03216637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205351760|ref|YP_002225561.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|224582287|ref|YP_002636085.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|238911420|ref|ZP_04655257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|374978475|ref|ZP_09719817.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|375000177|ref|ZP_09724517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|375113376|ref|ZP_09758546.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|375117885|ref|ZP_09763052.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|375122545|ref|ZP_09767709.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|378443953|ref|YP_005231585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|378448787|ref|YP_005236146.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378698412|ref|YP_005180369.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|378983054|ref|YP_005246209.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|378987851|ref|YP_005251015.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379699670|ref|YP_005241398.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383495257|ref|YP_005395946.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. 798]
gi|386590382|ref|YP_006086782.1| ATP-dependent Clp protease ATP-binding ClpX [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|409248895|ref|YP_006884733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|416424705|ref|ZP_11691886.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|416432830|ref|ZP_11696435.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|416440100|ref|ZP_11700681.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|416444541|ref|ZP_11703774.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|416453747|ref|ZP_11709821.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|416458587|ref|ZP_11713106.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|416465623|ref|ZP_11716945.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|416473281|ref|ZP_11719748.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416484369|ref|ZP_11724165.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|416501556|ref|ZP_11732146.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416510474|ref|ZP_11737072.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|416520601|ref|ZP_11740313.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|416526652|ref|ZP_11742557.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|416536138|ref|ZP_11748205.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|416542340|ref|ZP_11751510.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|416552362|ref|ZP_11757078.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|416557283|ref|ZP_11759412.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|416573529|ref|ZP_11767875.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|416576688|ref|ZP_11769270.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|416583720|ref|ZP_11773476.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|416595068|ref|ZP_11780882.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|416596607|ref|ZP_11781499.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|416605756|ref|ZP_11787188.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|416614719|ref|ZP_11792971.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|416623398|ref|ZP_11797373.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|416634044|ref|ZP_11802325.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|416639006|ref|ZP_11804305.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|416648502|ref|ZP_11809147.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|416653402|ref|ZP_11811846.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|416670922|ref|ZP_11820411.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|416673585|ref|ZP_11820908.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|416691333|ref|ZP_11826155.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|416706819|ref|ZP_11832008.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|416713233|ref|ZP_11836875.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|416719436|ref|ZP_11841292.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|416723572|ref|ZP_11844238.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|416734154|ref|ZP_11850809.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|416740074|ref|ZP_11854162.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|416745271|ref|ZP_11857203.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|416757172|ref|ZP_11863002.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|416764386|ref|ZP_11867990.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|416766795|ref|ZP_11869411.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|417324523|ref|ZP_12110765.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Adelaide str. A4-669]
gi|417339755|ref|ZP_12121241.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|417356091|ref|ZP_12131736.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Give str. S5-487]
gi|417379166|ref|ZP_12147615.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|417388735|ref|ZP_12152776.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Minnesota str. A4-603]
gi|417406176|ref|ZP_12157836.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|417451306|ref|ZP_12163047.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Montevideo str. S5-403]
gi|417504470|ref|ZP_12174141.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|417516427|ref|ZP_12179333.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|417525810|ref|ZP_12184554.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|417537134|ref|ZP_12190098.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
gi|418485273|ref|ZP_13054257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|418490799|ref|ZP_13057335.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|418493156|ref|ZP_13059624.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|418498100|ref|ZP_13064515.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|418504394|ref|ZP_13070752.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|418507975|ref|ZP_13074283.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|418511865|ref|ZP_13078113.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|418525615|ref|ZP_13091595.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|418763193|ref|ZP_13319317.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|418766727|ref|ZP_13322799.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|418771898|ref|ZP_13327904.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|418774851|ref|ZP_13330812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|418781196|ref|ZP_13337081.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|418784658|ref|ZP_13340495.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|418791370|ref|ZP_13347133.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|418793870|ref|ZP_13349596.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|418799552|ref|ZP_13355218.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|418804742|ref|ZP_13360346.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|418807602|ref|ZP_13363160.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|418812140|ref|ZP_13367664.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|418815499|ref|ZP_13371000.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|418821320|ref|ZP_13376745.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|418831777|ref|ZP_13386727.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|418835779|ref|ZP_13390670.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|418838763|ref|ZP_13393605.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|418844393|ref|ZP_13399185.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|418848965|ref|ZP_13403700.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|418853325|ref|ZP_13408018.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|418860807|ref|ZP_13415382.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|418864290|ref|ZP_13418825.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|418866313|ref|ZP_13420776.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|419727609|ref|ZP_14254577.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|419733912|ref|ZP_14260807.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|419738878|ref|ZP_14265634.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|419743019|ref|ZP_14269687.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|419749565|ref|ZP_14276044.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|419788920|ref|ZP_14314603.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|419793962|ref|ZP_14319578.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|421357761|ref|ZP_15808069.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|421365244|ref|ZP_15815466.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|421368980|ref|ZP_15819164.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|421372428|ref|ZP_15822577.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|421376039|ref|ZP_15826148.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|421380609|ref|ZP_15830671.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|421383973|ref|ZP_15834002.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|421392474|ref|ZP_15842431.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|421396009|ref|ZP_15845941.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|421398668|ref|ZP_15848573.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|421405150|ref|ZP_15854985.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|421407750|ref|ZP_15857557.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|421412092|ref|ZP_15861855.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|421419439|ref|ZP_15869131.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|421423884|ref|ZP_15873535.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|421425638|ref|ZP_15875273.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|421429986|ref|ZP_15879580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|421436813|ref|ZP_15886339.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|421439186|ref|ZP_15888677.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|421445861|ref|ZP_15895282.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|421451187|ref|ZP_15900553.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|421572545|ref|ZP_16018191.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|421577454|ref|ZP_16023042.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|421582043|ref|ZP_16027584.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|421584558|ref|ZP_16030066.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|421884327|ref|ZP_16315542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|422024584|ref|ZP_16371061.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|422029607|ref|ZP_16375863.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427545786|ref|ZP_18926372.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427562134|ref|ZP_18931137.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427580637|ref|ZP_18935959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427602845|ref|ZP_18940735.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427627513|ref|ZP_18945645.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427650794|ref|ZP_18950401.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427659814|ref|ZP_18955355.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427664927|ref|ZP_18960101.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|427698522|ref|ZP_18965035.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|436615596|ref|ZP_20514265.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|436810602|ref|ZP_20529640.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|436813650|ref|ZP_20531838.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|436831374|ref|ZP_20536042.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|436849786|ref|ZP_20540923.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|436856199|ref|ZP_20545304.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|436863184|ref|ZP_20549727.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|436871660|ref|ZP_20554834.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|436878811|ref|ZP_20559230.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|436886926|ref|ZP_20563332.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|436894407|ref|ZP_20567885.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|436904533|ref|ZP_20574550.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|436909990|ref|ZP_20576575.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|436918243|ref|ZP_20581414.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|436925536|ref|ZP_20585968.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|436934283|ref|ZP_20590287.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|436941289|ref|ZP_20594849.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|436949279|ref|ZP_20599293.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|436959669|ref|ZP_20603866.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|436975114|ref|ZP_20611390.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|436987195|ref|ZP_20615839.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|436999732|ref|ZP_20620305.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|437010050|ref|ZP_20624030.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|437018153|ref|ZP_20626645.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|437035562|ref|ZP_20633488.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|437046588|ref|ZP_20638404.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|437049339|ref|ZP_20639959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|437056847|ref|ZP_20644215.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|437065299|ref|ZP_20648984.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|437078921|ref|ZP_20656415.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|437081945|ref|ZP_20658020.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|437089969|ref|ZP_20662541.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|437117165|ref|ZP_20669785.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|437122540|ref|ZP_20672382.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|437132641|ref|ZP_20678091.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|437137748|ref|ZP_20680543.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|437149061|ref|ZP_20687934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|437151980|ref|ZP_20689651.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|437160928|ref|ZP_20695001.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|437172785|ref|ZP_20701308.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|437176840|ref|ZP_20703644.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|437188249|ref|ZP_20710253.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|437238183|ref|ZP_20714100.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|437259710|ref|ZP_20717230.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|437272721|ref|ZP_20724471.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|437274739|ref|ZP_20725431.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|437288359|ref|ZP_20730693.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|437307006|ref|ZP_20734648.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|437353360|ref|ZP_20747851.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|437404297|ref|ZP_20752073.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|437456276|ref|ZP_20760395.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|437470001|ref|ZP_20765016.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|437485280|ref|ZP_20769392.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|437499043|ref|ZP_20773852.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|437513522|ref|ZP_20777500.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|437531376|ref|ZP_20780746.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|437554752|ref|ZP_20784524.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|437571698|ref|ZP_20788807.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|437595755|ref|ZP_20796008.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|437602361|ref|ZP_20798368.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|437625361|ref|ZP_20805446.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|437632903|ref|ZP_20806596.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|437658473|ref|ZP_20811680.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|437672065|ref|ZP_20816064.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|437694787|ref|ZP_20821862.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|437710352|ref|ZP_20826457.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|437726123|ref|ZP_20829928.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|437811613|ref|ZP_20841205.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|437833274|ref|ZP_20844622.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SARB17]
gi|438091448|ref|ZP_20860959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
81-2625]
gi|438105779|ref|ZP_20866397.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|438114454|ref|ZP_20870070.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|440761975|ref|ZP_20941041.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440768722|ref|ZP_20947687.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440772486|ref|ZP_20951390.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|445132410|ref|ZP_21382197.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|445144198|ref|ZP_21386947.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|445150703|ref|ZP_21389849.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|445172333|ref|ZP_21396424.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|445214949|ref|ZP_21401733.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|445232596|ref|ZP_21406109.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|445343521|ref|ZP_21416990.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|445354599|ref|ZP_21421498.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|452121290|ref|YP_007471538.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
gi|21263472|sp|Q8ZRC0.1|CLPX_SALTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|81309773|sp|Q57SB4.1|CLPX_SALCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|81360133|sp|Q5PFN5.1|CLPX_SALPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|189044148|sp|A9MWX5.1|CLPX_SALPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238689941|sp|B5BD82.1|CLPX_SALPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238690000|sp|B5EXI9.1|CLPX_SALA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238690231|sp|B4T9E4.1|CLPX_SALHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238690324|sp|B5FKV4.1|CLPX_SALDC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238690478|sp|B5R6V0.1|CLPX_SALG2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238690697|sp|B4TMC7.1|CLPX_SALSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|238693543|sp|B4SWU2.1|CLPX_SALNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|254763861|sp|C0Q7X4.1|CLPX_SALPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|16418956|gb|AAL19404.1| specificity component of clpA-clpP ATP-dependent serine protease,
chaperone [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56128652|gb|AAV78158.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62126694|gb|AAX64397.1| specificity component of clpA-clpP ATP-dependent serine protease,
chaperone [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161364721|gb|ABX68489.1| hypothetical protein SPAB_03128 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404298|gb|ACF64520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194409786|gb|ACF70005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194457636|gb|EDX46475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194710322|gb|ACF89543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195631578|gb|EDX50098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094792|emb|CAR60325.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|197214475|gb|ACH51872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197241373|gb|EDY23993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197289504|gb|EDY28867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197937074|gb|ACH74407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199602471|gb|EDZ01017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205271541|emb|CAR36359.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|205330906|gb|EDZ17670.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205333989|gb|EDZ20753.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205344101|gb|EDZ30865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349962|gb|EDZ36593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224466814|gb|ACN44644.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|261245732|emb|CBG23529.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267992165|gb|ACY87050.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157060|emb|CBW16544.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312911482|dbj|BAJ35456.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320084723|emb|CBY94514.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321226027|gb|EFX51078.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322614727|gb|EFY11656.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322618833|gb|EFY15721.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322623540|gb|EFY20379.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629161|gb|EFY25940.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322631882|gb|EFY28636.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322637381|gb|EFY34083.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322642066|gb|EFY38676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322647885|gb|EFY44360.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322652563|gb|EFY48917.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322653275|gb|EFY49608.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660576|gb|EFY56812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664728|gb|EFY60921.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669219|gb|EFY65369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322670764|gb|EFY66897.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678997|gb|EFY75052.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322682026|gb|EFY78051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685145|gb|EFY81142.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322713522|gb|EFZ05093.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|323128769|gb|ADX16199.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|323192961|gb|EFZ78184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323196957|gb|EFZ82099.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203942|gb|EFZ88959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323214176|gb|EFZ98934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323214500|gb|EFZ99251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323223057|gb|EGA07400.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323227006|gb|EGA11187.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230176|gb|EGA14296.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323233914|gb|EGA18003.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238392|gb|EGA22450.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244079|gb|EGA28088.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323246240|gb|EGA30223.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251866|gb|EGA35729.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323257863|gb|EGA41542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323261124|gb|EGA44716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264946|gb|EGA48445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323272509|gb|EGA55916.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326622152|gb|EGE28497.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|326626795|gb|EGE33138.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|332987398|gb|AEF06381.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353074865|gb|EHB40625.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353578761|gb|EHC40500.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Adelaide str. A4-669]
gi|353597182|gb|EHC53973.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Give str. S5-487]
gi|353618301|gb|EHC69017.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353624601|gb|EHC73596.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Minnesota str. A4-603]
gi|353628151|gb|EHC76287.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353636600|gb|EHC82615.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Montevideo str. S5-403]
gi|353651590|gb|EHC93637.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353654324|gb|EHC95628.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|353668980|gb|EHD06017.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
gi|353669716|gb|EHD06540.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|357959982|gb|EHJ84000.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|363549143|gb|EHL33500.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|363554590|gb|EHL38825.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|363557704|gb|EHL41909.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|363564588|gb|EHL48635.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|363565244|gb|EHL49280.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|363571796|gb|EHL55700.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|363578797|gb|EHL62599.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|366056251|gb|EHN20577.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|366065086|gb|EHN29281.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|366065331|gb|EHN29521.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|366071236|gb|EHN35336.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|366073877|gb|EHN37941.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|366080281|gb|EHN44253.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|366084182|gb|EHN48093.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|366829496|gb|EHN56372.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|372206384|gb|EHP19888.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|379986041|emb|CCF87815.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|380462078|gb|AFD57481.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. 798]
gi|381299099|gb|EIC40173.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|381300718|gb|EIC41776.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|381301191|gb|EIC42247.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|381310721|gb|EIC51547.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|381312571|gb|EIC53368.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|383797426|gb|AFH44508.1| ATP-dependent Clp protease ATP-binding ClpX [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|392616052|gb|EIW98487.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|392616386|gb|EIW98819.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|392733473|gb|EIZ90675.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|392734437|gb|EIZ91619.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|392736738|gb|EIZ93900.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|392747923|gb|EJA04914.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|392750051|gb|EJA07027.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|392754189|gb|EJA11108.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|392755459|gb|EJA12369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|392763550|gb|EJA20357.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|392763870|gb|EJA20676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|392769771|gb|EJA26500.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|392776880|gb|EJA33566.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|392778865|gb|EJA35536.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|392790915|gb|EJA47408.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|392791951|gb|EJA48419.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|392798674|gb|EJA54945.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|392803054|gb|EJA59255.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|392814589|gb|EJA70540.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|392815213|gb|EJA71157.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|392822312|gb|EJA78124.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|392826191|gb|EJA81924.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|392827373|gb|EJA83082.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|392831551|gb|EJA87184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|392840223|gb|EJA95759.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|395980755|gb|EJH89978.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|395983275|gb|EJH92468.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|395989998|gb|EJH99130.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|396000078|gb|EJI09093.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|396003266|gb|EJI12254.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|396003658|gb|EJI12645.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|396008035|gb|EJI16970.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|396011053|gb|EJI19964.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|396020535|gb|EJI29376.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|396024461|gb|EJI33247.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|396029682|gb|EJI38418.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|396030458|gb|EJI39192.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|396035579|gb|EJI44251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|396035932|gb|EJI44603.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|396044340|gb|EJI52937.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|396052133|gb|EJI60641.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|396056909|gb|EJI65382.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|396057303|gb|EJI65775.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|396063942|gb|EJI72330.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|396064296|gb|EJI72683.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|396071392|gb|EJI79717.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|402515480|gb|EJW22894.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|402516042|gb|EJW23455.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|402516371|gb|EJW23782.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|402531076|gb|EJW38289.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|414023308|gb|EKT06742.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414023849|gb|EKT07263.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414025325|gb|EKT08655.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414037189|gb|EKT19973.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414038659|gb|EKT21366.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414042388|gb|EKT24926.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414051735|gb|EKT33819.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414053184|gb|EKT35196.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414057650|gb|EKT39403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414061848|gb|EKT43225.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414067322|gb|EKT47700.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|434965094|gb|ELL58057.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|434967685|gb|ELL60486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434975158|gb|ELL67468.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|434982331|gb|ELL74154.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|434988363|gb|ELL79962.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|434991632|gb|ELL83120.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|434997711|gb|ELL88950.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|435000875|gb|ELL91997.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|435007487|gb|ELL98340.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|435011458|gb|ELM02178.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|435017055|gb|ELM07563.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|435018221|gb|ELM08696.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|435028363|gb|ELM18442.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|435030975|gb|ELM20964.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|435039929|gb|ELM29698.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|435041423|gb|ELM31165.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|435045120|gb|ELM34765.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|435050065|gb|ELM39570.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|435053977|gb|ELM43413.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|435054334|gb|ELM43769.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|435059776|gb|ELM49051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|435060273|gb|ELM49543.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|435066950|gb|ELM56021.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|435074929|gb|ELM63752.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|435078058|gb|ELM66802.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|435081745|gb|ELM70386.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|435096365|gb|ELM84637.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|435096877|gb|ELM85139.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|435099947|gb|ELM88138.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|435101277|gb|ELM89431.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|435111113|gb|ELM99018.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|435113537|gb|ELN01383.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|435114987|gb|ELN02777.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|435122188|gb|ELN09710.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|435123366|gb|ELN10859.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|435130870|gb|ELN18098.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|435134382|gb|ELN21510.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|435143453|gb|ELN30319.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|435143862|gb|ELN30716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|435146441|gb|ELN33234.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|435155565|gb|ELN42109.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|435156169|gb|ELN42671.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|435165098|gb|ELN51158.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|435168053|gb|ELN53906.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|435175817|gb|ELN61220.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|435183759|gb|ELN68720.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|435185206|gb|ELN70089.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435186994|gb|ELN71807.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|435205372|gb|ELN88971.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|435206983|gb|ELN90475.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|435212165|gb|ELN95190.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435214886|gb|ELN97634.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|435216455|gb|ELN98930.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|435223966|gb|ELO05950.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|435230159|gb|ELO11493.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|435243442|gb|ELO23700.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|435243628|gb|ELO23885.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|435248151|gb|ELO28072.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|435250914|gb|ELO30624.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|435253180|gb|ELO32668.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|435260049|gb|ELO39262.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|435270472|gb|ELO48968.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|435278367|gb|ELO56238.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|435279707|gb|ELO57451.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|435282537|gb|ELO60152.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435289125|gb|ELO66115.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|435292073|gb|ELO68862.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|435297967|gb|ELO74224.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|435302260|gb|ELO78235.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SARB17]
gi|435315857|gb|ELO89077.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
81-2625]
gi|435321468|gb|ELO93883.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|435328853|gb|ELP00311.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|436416441|gb|ELP14347.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|436418435|gb|ELP16319.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436424267|gb|ELP22050.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|444847338|gb|ELX72488.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|444849098|gb|ELX74215.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|444856540|gb|ELX81567.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|444859545|gb|ELX84489.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444860440|gb|ELX85355.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|444862184|gb|ELX87044.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|444881325|gb|ELY05369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|444887689|gb|ELY11382.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|451910294|gb|AGF82100.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
Length = 423
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 414
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|338974251|ref|ZP_08629613.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Bradyrhizobiaceae bacterium SG-6C]
gi|338232978|gb|EGP08106.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Bradyrhizobiaceae bacterium SG-6C]
Length = 424
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISGRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +IL EPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI 409
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|153006263|ref|YP_001380588.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
sp. Fw109-5]
gi|152029836|gb|ABS27604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Anaeromyxobacter sp. Fw109-5]
Length = 412
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP K + + E +QVDTTNILF+ GA+ GL+++I RR + LGFG
Sbjct: 205 LLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFCGLEQIIERRSGGRSLGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ T + + L L VE DL+ FGMIPEFVGR P+
Sbjct: 265 SDVTSKSEKNIGEL----------------------LAMVEPDDLLKFGMIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ ILT+P+NA+++QY+ L MD V L F+ AL+AIAR A + K GAR
Sbjct: 303 ITSLEELDEPALIEILTKPRNALVKQYKRLLEMDGVSLKFTDGALKAIARAATKNKAGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+ES +LD MY+VP ++ + I+ED + K AP
Sbjct: 363 GLRAILESAMLDIMYDVPSRRNVREIVISEDVIDKKEAP 401
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 170 AQKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKIIEGTVANVPPKGG---RKH 224
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 225 PQQEFLQVDTTNILFIC 241
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|365966448|ref|YP_004948010.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745361|gb|AEW76266.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 413
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 21/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGTI ++P + + + EM+++DT+ ILF+ GA+ GLD++I +R
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILFICGGAFAGLDKVIEKR--------- 259
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S+A SA + +E+D KQVE DL+ +G+IPEF+GR P+
Sbjct: 260 -----------TSVATAIGFSAEIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L++E LVRILTEPKNA+ +QYQ LF +++V L F+ EAL A+A+ AL +KTGAR
Sbjct: 309 VAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSDIL-MVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MY++P + L V + E+ + N +P I
Sbjct: 369 GLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDNQSPELI 410
>gi|207855929|ref|YP_002242580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|436653599|ref|ZP_20516816.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|436797183|ref|ZP_20523129.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|437323567|ref|ZP_20739301.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|437338517|ref|ZP_20743722.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|445246810|ref|ZP_21408350.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|445337410|ref|ZP_21415967.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|238690386|sp|B5QTJ7.1|CLPX_SALEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|206707732|emb|CAR32017.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|434961255|gb|ELL54573.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|435025337|gb|ELM15493.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|435194618|gb|ELN79046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|435195908|gb|ELN80264.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|444873410|gb|ELX97707.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|444890254|gb|ELY13607.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 423
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|406942058|gb|EKD74393.1| hypothetical protein ACD_44C00469G0003 [uncultured bacterium]
Length = 422
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 134/219 (61%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I R + +GF
Sbjct: 210 LLKLIEGTVASVPPQGGRKHPQQEFIQVDTKNILFICGGAFAGLEKVIRERSEKSGIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA + ++ED K D L +VE DLI FG+IPE +GR P+
Sbjct: 269 --------------------SAEIHSKEDAKSIDQLLHEVEPADLIRFGLIPELIGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E+L+RILTEPKNA+++QY+ LF M+ V L F ALQ IA ++EKKTGAR
Sbjct: 309 VATLEELDKEVLLRILTEPKNALVKQYRKLFEMEGVSLEFRDTALQLIAERSVEKKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E LLD MYE+P S + V + E + ++P
Sbjct: 369 GLRSILEKTLLDIMYELPSLSHVTKVIVDESCIKGESSP 407
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 278 ALAAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334
A A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G
Sbjct: 173 AKAQTGIVYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---R 227
Query: 335 RYPNTGYIWYRYPNTGYIW 353
++P +I N +I
Sbjct: 228 KHPQQEFIQVDTKNILFIC 246
>gi|358462021|ref|ZP_09172167.1| ATP-dependent Clp protease ATP-binding subunit clpX [Frankia sp.
CN3]
gi|357072370|gb|EHI81914.1| ATP-dependent Clp protease ATP-binding subunit clpX [Frankia sp.
CN3]
Length = 430
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GLDR+I R +K LGF
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++D D F V DL+ +GMIPEF+GR P+
Sbjct: 273 --------------------RAVLHGKDDPDASDVF-GDVMPEDLLKYGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L +L++E L+RILTEPKNA+++QY+ LF +D VDL F+ +AL+AIA A+ + TGAR
Sbjct: 312 LTSVQNLDREALIRILTEPKNALVRQYKRLFELDNVDLDFTSDALEAIADQAILRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY++P D+ V +T + VL++ P+ +
Sbjct: 372 GLRAIMEEVLMSVMYDIPSRKDVARVVVTREVVLEHVNPTLV 413
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 182 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 217
>gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp.
EuI1c]
gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
EuI1c]
Length = 430
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GLDR+I R +K LGF
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++D D F V DL+ +GMIPEF+GR P+
Sbjct: 273 --------------------RAVLHGKDDPDAADVF-GDVMPEDLLKYGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L +L++E L+RILTEPKNA+++QY+ LF +D VDL F+ +AL+AIA A+ + TGAR
Sbjct: 312 LTSVQNLDREALIRILTEPKNALVRQYKRLFELDNVDLDFTSDALEAIADQAILRGTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L+ MY++P D+ V +T + VL++ P+ +
Sbjct: 372 GLRAIMEEVLMSVMYDIPSRKDVARVVVTREVVLEHVNPTLV 413
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 182 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 217
>gi|239987604|ref|ZP_04708268.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
roseosporus NRRL 11379]
gi|291444567|ref|ZP_06583957.1| ATP-dependent protease ATP-binding subunit [Streptomyces
roseosporus NRRL 15998]
gi|411005732|ref|ZP_11382061.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
globisporus C-1027]
gi|291347514|gb|EFE74418.1| ATP-dependent protease ATP-binding subunit [Streptomyces
roseosporus NRRL 15998]
Length = 432
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA++GL+++I R K +GFG
Sbjct: 214 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFG 273
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 274 A---------------------TIRSKLEIQASDQF-QEVMPEDLVKFGMIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L H+L++E L++IL EP+NA+++QYQ LF +D V+L F EAL+AIA A+ ++TGAR
Sbjct: 312 LTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +L MYEVP D+ V IT D V N P+ +
Sbjct: 372 GLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRDNVNPTLV 413
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 158 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 215
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 216 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 249
>gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Halothermothrix orenii H 168]
gi|254763850|sp|B8CY73.1|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Halothermothrix orenii H 168]
Length = 416
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 142/223 (63%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+A GA++GLD++I R + K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIAGGAFDGLDKIIKSRIDNKVMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ +++ EE+ E LK + DL+ +G+IPEF+GR P+
Sbjct: 268 A--------------DIKSKT-----EENVGET---LKYILPEDLLRYGLIPEFIGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V + L +E LV+ILTEP+NA+++QY+ F MD V+L F+PEAL AIA+ ALE+ TGAR
Sbjct: 306 IVTLNELVEEDLVKILTEPRNALVKQYKKFFEMDNVELEFTPEALTAIAQKALERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYIR 241
GLRA++E +LD MY++P I IT + + + P IR
Sbjct: 366 GLRAVVEEAILDIMYDLPSEPGIAKCVITPEVIKNHKNPELIR 408
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIEKAERGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFI 243
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|414166620|ref|ZP_11422852.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia
clevelandensis ATCC 49720]
gi|410892464|gb|EKS40256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Afipia
clevelandensis ATCC 49720]
Length = 424
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISGRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F ++VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-REVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +IL EPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEATARPLYI 409
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|377557322|ref|ZP_09786972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
gastricus PS3]
gi|376165728|gb|EHS84669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
gastricus PS3]
Length = 415
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +QVDT+NILF+ GA++G++ ++ R +K +GFG
Sbjct: 210 LLKILEGTIANVPPQGGRKHPQQEFIQVDTSNILFIVGGAFDGIETIVKERLGDKTIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E D L+ V DL+ FG+IPEF+GR P+
Sbjct: 270 TNSREI----------------------DTVTDKNVLQHVVPEDLLKFGLIPEFIGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVRILTEPKNA+++QYQ L +D +L F+ AL+A+A+LA+E++TGAR
Sbjct: 308 MTALEKLDEDDLVRILTEPKNALVKQYQTLIGLDDCELEFTDGALKAMAQLAIERQTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D MY++P D+ V I + V ++TAP Y+
Sbjct: 368 GLRSIIEDVMRDVMYDLPSRQDVAKVVIEKRCVTQHTAPRYV 409
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 154 GEDVENIILKLLQAADFDIDRAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 214 LEGTIANVPPQGG---RKHPQQEFIQVDTSNILFI 245
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 177 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213
>gi|107101234|ref|ZP_01365152.1| hypothetical protein PaerPA_01002267 [Pseudomonas aeruginosa PACS2]
Length = 426
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+R+I R +GF
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGF- 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++E K+ K+VE DL+ FG+IPEFVGR P+
Sbjct: 271 --------------------NAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L++ILTEPKNA+ +QY LF M+ VDL F P+AL+A+A ALE+KTGAR
Sbjct: 311 IATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVAHKALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMI 412
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
palustris BisB18]
gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
palustris BisA53]
gi|122296221|sp|Q07NN5.1|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|122476340|sp|Q215J1.1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodopseudomonas palustris BisB18]
gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodopseudomonas palustris BisA53]
Length = 424
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|419694486|ref|ZP_14222451.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380670838|gb|EIB86083.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9872]
Length = 407
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALKAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|399992449|ref|YP_006572689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398657004|gb|AFO90970.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 422
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I +R +GFG
Sbjct: 211 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRGKGSAMGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ + S A E K +E DL+ FG+IPEFVGR P+
Sbjct: 271 A--------------DVRDDSDAGVGE--------TFKDLEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L+ ILT+PKNA+++QYQ LF ++ +L F+ EAL +IA+ A+E+KTGAR
Sbjct: 309 LATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAKKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LL++M+E+PG D + V + E+ V + P I
Sbjct: 369 GLRSILEDILLNTMFELPGMDSVEKVVVNEEAVNSDAQPLMIHA 412
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 213 KLMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 247
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 214
>gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter
winogradskyi Nb-255]
gi|123773227|sp|Q3SRD3.1|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255]
Length = 424
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|260654936|ref|ZP_05860424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
anthropi E3_33 E1]
gi|260630251|gb|EEX48445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
anthropi E3_33 E1]
Length = 435
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 24/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E + +DT NILF+ +GA++GL+ +I+RR N +GFG
Sbjct: 217 LLKILEGTVANVPPQGGRKHPQQEFIAIDTRNILFICAGAFDGLEEIIARRLNRHVIGFG 276
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E R+ DL L QVE DLI +G IPE GR P+
Sbjct: 277 GENQE---RKRDVSYDL-------------------LSQVEPEDLIHYGFIPELTGRLPL 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V +L+++ LVR+LTEPKN++++QYQ +F + +L F+P+AL+AIA+ A+ KK GAR
Sbjct: 315 AVALRTLDEDALVRVLTEPKNSLVRQYQAIFAQEGAELEFTPQALRAIAQKAVNKKAGAR 374
Query: 200 GLRAIMESLLLDSMYEVPGSD--ILMVHITEDTVLKNTAPSYIRG 242
GLR+IME+L+LD MYEVP S + V I E V P I G
Sbjct: 375 GLRSIMENLMLDLMYEVPSSSRPVSRVVIGEACVTGGEEPEIIYG 419
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 269 VQQGMLKVSALAAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327
+Q VSA A GI++LDE+DKI + RDV GEGVQQ +LK+ + P
Sbjct: 172 IQAANFDVSA-AEHGIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVANVPP 230
Query: 328 NTGYLWYRYPNTGYIWYRYPNTGYIW 353
G ++P +I N +I
Sbjct: 231 QGG---RKHPQQEFIAIDTRNILFIC 253
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
GI++LDE+DKI + RDV GEGVQQ +LK+
Sbjct: 185 GIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKI 220
>gi|340758792|ref|ZP_08695374.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fusobacterium
varium ATCC 27725]
gi|251836567|gb|EES65102.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fusobacterium
varium ATCC 27725]
Length = 416
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 136/217 (62%), Gaps = 23/217 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT VP + + E++++DT NILF+ GA+ GL+++I R N+K +GFG
Sbjct: 212 LLKIIEGTKSQVPPQGGRKHPNQELIEIDTANILFIVGGAFEGLEKVIKSRTNKKVIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V +E + K + F+K V DL+ G+IPE VGR P+
Sbjct: 272 AD---------------------VKSETEEKVGEVFVK-VLPEDLVRQGIIPELVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+RILTEPKNA+++QY+ LF ++ VDL F+PEAL+ IA LALE+K GAR
Sbjct: 310 ITTLKDLDEEALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAVLALERKIGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNT 235
GLRAI+E +L+ MYEVP D I V I E+ VL +T
Sbjct: 370 GLRAIIEQTMLELMYEVPSDDSITKVTIGEEAVLDST 406
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GI+++DE+DKI + RDV GEGVQQ +LK+ P G ++PN
Sbjct: 177 AERGIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGG---RKHPN 233
Query: 339 TGYIWYRYPNTGYI 352
I N +I
Sbjct: 234 QELIEIDTANILFI 247
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 179 RGIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKI 215
>gi|424844796|ref|ZP_18269407.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Jonquetella
anthropi DSM 22815]
gi|363986234|gb|EHM13064.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Jonquetella
anthropi DSM 22815]
Length = 433
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 24/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + + E + +DT NILF+ +GA++GL+ +I+RR N +GFG
Sbjct: 215 LLKILEGTVANVPPQGGRKHPQQEFIAIDTRNILFICAGAFDGLEEIIARRLNRHVIGFG 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E R+ DL L QVE DLI +G IPE GR P+
Sbjct: 275 GENQE---RKRDVSYDL-------------------LSQVEPEDLIHYGFIPELTGRLPL 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V +L+++ LVR+LTEPKN++++QYQ +F + +L F+P+AL+AIA+ A+ KK GAR
Sbjct: 313 AVALRTLDEDALVRVLTEPKNSLVRQYQAIFAQEGAELEFTPQALRAIAQKAVNKKAGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGSD--ILMVHITEDTVLKNTAPSYIRG 242
GLR+IME+L+LD MYEVP S + V I E V P I G
Sbjct: 373 GLRSIMENLMLDLMYEVPSSSRPVSRVVIGEACVTGGEEPEIIYG 417
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 269 VQQGMLKVSALAAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327
+Q VSA A GI++LDE+DKI + RDV GEGVQQ +LK+ + P
Sbjct: 170 IQAANFDVSA-AEHGIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVANVPP 228
Query: 328 NTGYLWYRYPNTGYIWYRYPNTGYIW 353
G ++P +I N +I
Sbjct: 229 QGG---RKHPQQEFIAIDTRNILFIC 251
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 242 GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
GI++LDE+DKI + RDV GEGVQQ +LK+
Sbjct: 183 GIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKI 218
>gi|354557891|ref|ZP_08977148.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Desulfitobacterium metallireducens DSM 15288]
gi|353549565|gb|EHC19006.1| ATP-dependent Clp protease ATP-binding subunit clpX
[Desulfitobacterium metallireducens DSM 15288]
Length = 421
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 135/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+++LI R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFIVGGAFDGIEKLIQSRIGKKTMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + + LK++ DL+ FG+IPEFVGR PI
Sbjct: 268 AEIQKKSELKIGET----------------------LKEILPSDLLKFGLIPEFVGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E LVRILTEPKNA+++QY+ L +D V L F EAL +IA A+ + TGAR
Sbjct: 306 IVTLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKNEALTSIAEEAIRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++L+ MY++P +D+ IT+D VLK P
Sbjct: 366 GLRAIVEEIMLNVMYDIPSRTDVTKCVITQDVVLKKEEP 404
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFI 243
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|297734727|emb|CBI16961.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 149/223 (66%), Gaps = 20/223 (8%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGTIVNVPEK + + RG+ +Q+DT +ILF+ GA+ L++ IS R+ + +GFG
Sbjct: 304 LLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFG 363
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP A R L + A V++ + L+ VE+ DLI +G+IPEF+GRFPI
Sbjct: 364 APV--RANMRTGGLTN-----AVVTS--------SLLESVESSDLIAYGLIPEFIGRFPI 408
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV +L ++ LV++LTEPKNA+ +QY+ LF+M+ V L F+ +AL+ IA+ A+ K TGAR
Sbjct: 409 LVSLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNTGAR 468
Query: 200 GLRAIMESLLLDSMYEVP----GSD-ILMVHITEDTVLKNTAP 237
GLRA++ES+L ++MYE+P G D + V + E++V AP
Sbjct: 469 GLRALLESILTEAMYEIPDVKTGKDRVDAVVVDEESVGSVNAP 511
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ + K+ +A F G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 248 GEDVESILYKLLTVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 307
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 230 TVLKNTAPSYIRGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
TV + + +G+V++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 260 TVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKM 307
>gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
Length = 426
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 23/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E++Q+DTTNILF+ GA+ GLD++I R + K +GF
Sbjct: 218 LLKIIEGTVASVPPQGGRKHPHQELIQIDTTNILFICGGAFEGLDKIIETRMDRKSMGFN 277
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ N EDN D L QV +DL+ FG+IPE VGR P+
Sbjct: 278 A--------------EVGNHH------EDNV--DRLLSQVLPQDLVKFGLIPELVGRVPV 315
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
V L+++ L+RILTEPK+A+++QYQ L +D V+L F EAL+ IA +L +KTGAR
Sbjct: 316 NVTLEMLDRDALIRILTEPKSAIVKQYQKLLELDGVELEFDKEALEKIADTSLARKTGAR 375
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSY 239
GLRAIME++++D+MY VP +D I IT++ V P Y
Sbjct: 376 GLRAIMENVMMDTMYHVPSNDRIKTCRITKEAVEGTGEPVY 416
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A GI++LDE+DKI P I RDV GEGVQQ +L
Sbjct: 162 GEDVENILLKIIQAADGDIERAEHGIIYLDEIDKITRKSENPSI--TRDVSGEGVQQALL 219
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ I N +I
Sbjct: 220 KIIEGTVASVPPQGG---RKHPHQELIQIDTTNILFIC 254
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
GI++LDE+DKI P I RDV GEGVQQ +LK+
Sbjct: 186 GIIYLDEIDKITRKSENPSI--TRDVSGEGVQQALLKI 221
>gi|407472867|ref|YP_006787267.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
acidurici 9a]
gi|407049375|gb|AFS77420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
acidurici 9a]
Length = 423
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+ ++ +R +K +GFG
Sbjct: 206 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIQDVVQQRIGKKSMGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A QS +++K+ LK ++ DL+ FG+IPEFVGR PI
Sbjct: 266 AEI----------------QS------KNDKDTSELLKNLQPEDLLKFGLIPEFVGRLPI 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LV ILT+PKNA+ +QY+ L MD V+L EAL+ +A A+E+KTGAR
Sbjct: 304 MVTLEQLDRDALVDILTKPKNALTKQYKELLAMDGVELEIEKEALELVAEKAIERKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E ++LD MYE+P DI IT+DT+ +N P+ +
Sbjct: 364 GLRGIIEEIMLDIMYEIPSREDIEKCIITKDTIKENKEPTLV 405
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 150 GEDVENIILKLIQAADYDVERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 207
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 208 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFI 241
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 173 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 209
>gi|110680062|ref|YP_683069.1| ATP-dependent protease ATP-binding subunit ClpX [Roseobacter
denitrificans OCh 114]
gi|123361806|sp|Q165G0.1|CLPX_ROSDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|109456178|gb|ABG32383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
denitrificans OCh 114]
Length = 421
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V +D + F +E DL+ FG+IPEFVGR P+
Sbjct: 270 AD---------------------VRGNDDRGVGEIF-TDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ +LTF+ +AL AIA+ A+E+KTGAR
Sbjct: 308 LATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+M+++PG + V + E+ V + AP I
Sbjct: 368 GLRSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAPLMI 409
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 213
>gi|419642386|ref|ZP_14174187.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|380624983|gb|EIB43598.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni ATCC 33560]
Length = 407
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMIDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|333908457|ref|YP_004482043.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
posidonica IVIA-Po-181]
gi|333478463|gb|AEF55124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
posidonica IVIA-Po-181]
Length = 426
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 136/219 (62%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GL+R+I R + +GF
Sbjct: 216 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLERVIGERTEKSSIGF- 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++++ K + VE DL+ FG+IPEFVGR P+
Sbjct: 275 --------------------SAKVKSKDEGKSFSETVHNVETEDLVKFGLIPEFVGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+QE LV IL+EPKNA+++QYQ LF ++ V L F+PE+L A LALE+KTGAR
Sbjct: 315 VATLSELDQEALVTILSEPKNALVKQYQHLFELEGVALEFTPESLLEAASLALERKTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES LLD MY++P D++ V + ++ +AP
Sbjct: 375 GLRSILESALLDCMYDLPTRQDVVKVVMDAPSIRGESAP 413
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 183 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 219
>gi|386846307|ref|YP_006264320.1| ATP-dependent protease ATP-binding subunit ClpX [Actinoplanes sp.
SE50/110]
gi|359833811|gb|AEV82252.1| ATP-dependent protease ATP-binding subunit ClpX [Actinoplanes sp.
SE50/110]
Length = 429
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ NVP + + E +Q+DTTN+LF+ GA+ GLDR+I +R + +GFG
Sbjct: 213 LLKILEGTVANVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLDRIIEQRVGQGGVGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R S+++ + D +V D++ FG+IPEF+GR P+
Sbjct: 273 A--------RLRSISE--------------RNTDDIFSKVMPEDMLKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E L++ILTEP+NA ++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 311 ITTVRNLDREALIKILTEPRNAYVKQYQRLFELDGVELEFDEGALEAIADQAMLRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MYEVP + D V IT + VL+N P+ +
Sbjct: 371 GLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENVNPTIV 412
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKRAEQGIIYIDEVDKIARKSENPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 215 KILEGTVANVPPQGG---RKHPHQEFIQIDTTNVLFI 248
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 QGIIYIDEVDKIARKSENPSI--TRDVSGEGVQQALLKI 216
>gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
Length = 424
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISNRSRGSSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 ADVRAPDDRRTGEV----------------------LREVEPEDLLKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L ++ LV ILT+PKNA+++QYQ LF M+ V L F +AL+AIAR A+++KTGAR
Sbjct: 311 LATLEDLEEDALVDILTKPKNALVKQYQRLFEMEDVRLEFRDDALRAIARKAIDRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+IME++LLD MY++P D + + I D V + P
Sbjct: 371 GLRSIMENILLDPMYDLPQLDGVDEIIINGDVVNQGAKP 409
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
Nb-311A]
gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
Nb-311A]
Length = 400
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA++GL+++IS R +GF
Sbjct: 186 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRTTSIGF- 244
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 245 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 283
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 284 VATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 343
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 344 GLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 385
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 130 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 187
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 188 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 222
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 153 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 189
>gi|365848315|ref|ZP_09388792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yokenella
regensburgei ATCC 43003]
gi|364571023|gb|EHM48622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yokenella
regensburgei ATCC 43003]
Length = 436
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 223 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 282
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ + + L QVE DLI FG+IPEF+GR P
Sbjct: 283 GA---------------------TVKAKSEKANEGELLSQVEPEDLIKFGLIPEFIGRLP 321
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 322 VVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 381
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + +AP I G
Sbjct: 382 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSAPLLIYG 426
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 190 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 226
>gi|89098928|ref|ZP_01171808.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
B-14911]
gi|89086332|gb|EAR65453.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
B-14911]
Length = 376
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I RR +K +GFG
Sbjct: 163 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFG 222
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ + E D KE L +V DL+ FG+IPEF+GR P+
Sbjct: 223 SEQKQQ--------------------ELDQKE---LLSKVLPEDLLKFGLIPEFIGRLPV 259
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+ ILT+PKNA+++QYQ + +D V+L F AL IA+ A+E+KTGAR
Sbjct: 260 IASLTQLDEEALIEILTKPKNALVKQYQKMLELDDVELEFEEGALHEIAKKAIERKTGAR 319
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++LD M+++P DI IT++TV N+ P +
Sbjct: 320 GLRSIIEGIMLDVMFDLPSRDDISKCIITKETVTDNSVPKLV 361
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 107 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 164
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 165 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 199
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 130 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 166
>gi|350571079|ref|ZP_08939417.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
wadsworthii 9715]
gi|349793446|gb|EGZ47280.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
wadsworthii 9715]
Length = 455
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 135/219 (61%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + E +QVDTTNILF+ GA+ GL+++I +R + +GFG
Sbjct: 243 LLKLIEGTVASVPPQGGRKHPNQEFIQVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFG 302
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV +++D+ + + VE DLI FG+IPE +GR P+
Sbjct: 303 A---------------------AVHSKDDDSKITELFQTVEPEDLIKFGLIPELIGRLPV 341
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILTEPKNA+++QYQ LF M+ +L AL+++A+LALE+KTGAR
Sbjct: 342 IAALAELDEDALINILTEPKNALVKQYQALFEMEGAELEIEEAALRSVAKLALERKTGAR 401
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E LLD+MY +P D+ V IT D V K P
Sbjct: 402 GLRSILEKSLLDTMYLLPDLKDVKRVLITADVVEKGEQP 440
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+Q + K+ F GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 187 GEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 244
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++PN +I N +I
Sbjct: 245 KLIEGTVASVPPQGG---RKHPNQEFIQVDTTNILFIC 279
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 210 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 246
>gi|420156784|ref|ZP_14663624.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
sp. MSTE9]
gi|394756794|gb|EJF39853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
sp. MSTE9]
Length = 437
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEG++ NVP + + + E +Q+DT+NILF+ GA++GL+++I RR +GFG
Sbjct: 213 LLKILEGSVCNVPPQGGRKHPQQEFLQIDTSNILFICGGAFDGLEKIIERRTASSSMGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + S +L + A++ +V DL+ +G+IPE VGR P+
Sbjct: 273 A--------QIKSKKEL--------------DTTAWMSEVIPHDLVKYGLIPELVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L++E LVRILTEPKN++++QY+ LF +DKVDL F P+AL+ IA+ +E++TGAR
Sbjct: 311 ITALNGLDEEALVRILTEPKNSLVKQYKHLFQLDKVDLDFQPDALREIAKKTIERQTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+I+E +L MY+VP + V IT + V K TAP +
Sbjct: 371 GLRSILEEILTPLMYDVPSEYTVEKVMITPEAVKKGTAPELV 412
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLRLIQAADFDIERAENGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KILEGSVCNVPPQGG---RKHPQQEFLQIDTSNILFIC 249
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 216
>gi|419697490|ref|ZP_14225222.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|380677900|gb|EIB92759.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23211]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|317510940|ref|ZP_07968311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 305]
gi|384440933|ref|YP_005657236.1| ATP-dependent Clp protease ATP-binding subunit clpX [Campylobacter
jejuni subsp. jejuni M1]
gi|407941726|ref|YP_006857366.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni PT14]
gi|415732418|ref|ZP_11473881.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|415744693|ref|ZP_11474672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 327]
gi|419624272|ref|ZP_14157381.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|419632206|ref|ZP_14164764.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|419637286|ref|ZP_14169464.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|419649597|ref|ZP_14180835.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|419655752|ref|ZP_14186593.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|419661463|ref|ZP_14191789.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|419663347|ref|ZP_14193545.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|419677031|ref|ZP_14206193.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 87330]
gi|419684907|ref|ZP_14213483.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1577]
gi|307747216|gb|ADN90486.1| ATP-dependent Clp protease ATP-binding subunit clpX [Campylobacter
jejuni subsp. jejuni M1]
gi|315927197|gb|EFV06547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315929560|gb|EFV08749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 305]
gi|315932559|gb|EFV11491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 327]
gi|380598690|gb|EIB19079.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|380609322|gb|EIB29001.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|380615845|gb|EIB35078.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|380630130|gb|EIB48375.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|380636478|gb|EIB54175.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|380640219|gb|EIB57679.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|380643100|gb|EIB60341.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|380655390|gb|EIB71707.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 87330]
gi|380665916|gb|EIB81476.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1577]
gi|407905564|gb|AFU42393.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni PT14]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|86151365|ref|ZP_01069580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 260.94]
gi|85841712|gb|EAQ58959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 260.94]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
Length = 420
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 138/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIADRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + R+ L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPEKRKVGEL----------------------LEKSEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H L+ + LV IL EPKNA+++QY+ LF ++ VDLTF+ EAL AIA A+++KTGAR
Sbjct: 309 IATLHDLDVDALVTILKEPKNALVKQYRKLFELEDVDLTFTDEALVAIAERAIKRKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E +LLD+M+++P + + + I +D V P + G
Sbjct: 369 GLRSIVEGILLDTMFDLPDMEGVAEIVIDQDVVEGKKDPIRVHG 412
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQHGIVYIDEIDKITRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
>gi|300930259|ref|ZP_07145672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
coli MS 187-1]
gi|300461831|gb|EFK25324.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
coli MS 187-1]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
I+ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 IVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella canis
ATCC 23365]
gi|376276280|ref|YP_005116719.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brucella canis
HSK A52141]
gi|189082485|sp|A9M5C1.1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
canis ATCC 23365]
gi|363404847|gb|AEW15142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
canis HSK A52141]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ LDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFASLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA +E KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKVVEHKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>gi|419644561|ref|ZP_14176140.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|380621809|gb|EIB40591.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9081]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|419619814|ref|ZP_14153272.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 51494]
gi|419670593|ref|ZP_14200280.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|419673880|ref|ZP_14203329.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 51037]
gi|419678864|ref|ZP_14207898.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 87459]
gi|380602105|gb|EIB22398.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 51494]
gi|380650477|gb|EIB67111.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|380652831|gb|EIB69288.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 51037]
gi|380659140|gb|EIB75125.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 87459]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKALLIK 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|389795693|ref|ZP_10198807.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
fulvus Jip2]
gi|388430345|gb|EIL87519.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodanobacter
fulvus Jip2]
Length = 430
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 21/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I +R +GF
Sbjct: 213 LLKLIEGTLASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLEKVIQQRSETTGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E + L VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKERTENLGKVLADVEPEDLVRFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +Q++ LF M++V+L F PEALQAIA+ AL++KTGAR
Sbjct: 312 VATLDELDEAALVKILTEPKNAVTKQFKKLFEMEEVELEFRPEALQAIAKKALKRKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLR I+E +LL++MYE+P + + + +D V+ A Y+
Sbjct: 372 GLRTILEQVLLETMYELPSLEHVSKVVVDDAVINGQAEPYL 412
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 178 AQSGIVYIDEIDKISRKSENPSIT--RDVSGEGVQQALLKLIEGTLASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTKNILFIC 249
>gi|302545418|ref|ZP_07297760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
hygroscopicus ATCC 53653]
gi|302463036|gb|EFL26129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
himastatinicus ATCC 53653]
Length = 428
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 273 A---------------------TIRSKREIEASDQF-QEVMPEDLVKFGMIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 311 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ +MYEVP D+ V ITED V N P+ +
Sbjct: 371 GLRAIIEEVLMSAMYEVPSRKDVARVVITEDVVHSNVNPTLV 412
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
>gi|339503122|ref|YP_004690542.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Roseobacter
litoralis Och 149]
gi|338757115|gb|AEI93579.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Roseobacter
litoralis Och 149]
Length = 421
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R +GFG
Sbjct: 210 LLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAARGKGSAMGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V +D + F +E DL+ FG+IPEFVGR P+
Sbjct: 270 AD---------------------VRGNDDRGVGEIF-TDLEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT+PKNA+++QYQ LF ++ +L+F+ +AL AIA+ A+E+KTGAR
Sbjct: 308 LATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELSFTDDALSAIAKRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LL++M+E+PG D + V + E+ V + AP I
Sbjct: 368 GLRSILEDILLNTMFELPGLDSVTEVVVNEEAVNSDAAPLMI 409
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DEVDKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 175 AQRGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKLMEGTVASVPPQGG---RKH 229
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 230 PQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEVDKITRKSENPSI--TRDVSGEGVQQALLKL 213
>gi|269914470|pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
gi|269914471|pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
gi|269914472|pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
gi|269914473|pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
gi|269914474|pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
gi|269914475|pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 150 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 210 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 249 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 309 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 353
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 117 RGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
>gi|421464270|ref|ZP_15912960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens WC-A-157]
gi|400205023|gb|EJO36004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
radioresistens WC-A-157]
Length = 438
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 140/221 (63%), Gaps = 22/221 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL M+EGT+ ++P + + + E +QVDT+N+LF+ GA++GL++++ R+ + +GF
Sbjct: 211 LLKMIEGTVASIPPQGGRKHPQQEFIQVDTSNVLFICGGAFSGLEKIVQHRQEKGGIGF- 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V ++++ K+ +QVE DL+ FG+IPEF+GR P+
Sbjct: 270 --------------------TAEVKSKDETKKLAELFRQVEPADLVKFGLIPEFIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++IL EPKNA+ +QYQ LF M+ VDL F AL+A+A+ ALE+ TGAR
Sbjct: 310 IATLEELDEDALMQILIEPKNALTRQYQYLFNMEDVDLVFEDSALRAVAKKALERNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239
GLR+I+E++LL++MY++P +D+ V I E + P Y
Sbjct: 370 GLRSILENVLLETMYDLPSRNDVGTVVINEAVINDGAEPEY 410
>gi|253579814|ref|ZP_04857082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848813|gb|EES76775.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 438
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 136/224 (60%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R++ K +GFG
Sbjct: 211 LLKILEGTVASVPPQGGRKHPHQEFLQIDTTNILFICGGAFDGIEKIIESRQDTKSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A VS +ED + LK V D I FG+IPEF+GR P+
Sbjct: 271 A---------------------EVSVKED-RNVGEILKDVMPEDFIKFGLIPEFIGRVPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ L+ IL EPKN++ +QY LF +D V+L F +AL+ +A+ +LE+KTGAR
Sbjct: 309 VVTLDALDENALISILKEPKNSLTKQYHRLFELDGVELDFEDDALELVAKKSLERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLRAIME L+D MY++P D I IT+D V P +RG
Sbjct: 369 GLRAIMEGSLMDLMYKIPSDDTIRKCTITKDVVDGTGEPEIVRG 412
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALA-------AFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A +GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 155 GEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALL 212
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ ++ N +I
Sbjct: 213 KILEGTVASVPPQGG---RKHPHQEFLQIDTTNILFIC 247
>gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
Brasil 5]
Length = 324
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 127/196 (64%), Gaps = 22/196 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 151 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 210
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 211 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 248
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 249 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 308
Query: 200 GLRAIMESLLLDSMYE 215
GLR+IME +LLD+M+E
Sbjct: 309 GLRSIMEKILLDTMFE 324
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 95 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 152
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 153 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 187
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 118 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 154
>gi|121613694|ref|YP_999990.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 81-176]
gi|157414572|ref|YP_001481828.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
subsp. jejuni 81116]
gi|167004946|ref|ZP_02270704.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205356070|ref|ZP_03222838.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
jejuni subsp. jejuni CG8421]
gi|419617458|ref|ZP_14151032.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419622033|ref|ZP_14155276.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|419627522|ref|ZP_14160423.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|419635920|ref|ZP_14168209.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 55037]
gi|419652619|ref|ZP_14183689.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|419657565|ref|ZP_14188215.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|419659350|ref|ZP_14189886.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|419666702|ref|ZP_14196694.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|419687999|ref|ZP_14216329.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1854]
gi|424847109|ref|ZP_18271691.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni NW]
gi|87250025|gb|EAQ72983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 81-176]
gi|157385536|gb|ABV51851.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
jejuni subsp. jejuni 81116]
gi|205346194|gb|EDZ32829.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
jejuni subsp. jejuni CG8421]
gi|356485396|gb|EHI15389.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni NW]
gi|380597153|gb|EIB17815.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380600520|gb|EIB20853.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|380606578|gb|EIB26480.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|380611397|gb|EIB30948.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 55037]
gi|380628588|gb|EIB46886.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|380634543|gb|EIB52418.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|380639774|gb|EIB57249.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|380647152|gb|EIB64076.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|380666368|gb|EIB81911.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1854]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|269914476|pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
gi|269914477|pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
gi|269914478|pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
gi|269914479|pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
gi|269914480|pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
gi|269914481|pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 150 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 210 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 249 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 309 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 353
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 117 RGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
>gi|399060627|ref|ZP_10745702.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Novosphingobium sp. AP12]
gi|398037345|gb|EJL30539.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Novosphingobium sp. AP12]
Length = 420
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 130/198 (65%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + + E +QVDTTNILF+ GA+ GLD++I+ R ++ +GFG
Sbjct: 211 LLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIADRLQKRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR L L++ E DL+ FG+IPEFVGR P+
Sbjct: 271 AHVADPDKRRVGEL----------------------LQKAEPEDLLKFGLIPEFVGRLPV 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + L+ E LV+IL EPKNA+I+QY LF ++ V+LTF+ +AL+AIA+ A+E+KTGAR
Sbjct: 309 IATLNDLDIEALVKILKEPKNALIKQYARLFELEDVELTFTDDALEAIAQKAIERKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E LLLD+M+++P
Sbjct: 369 GLRSIVEGLLLDTMFDLP 386
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ P G ++
Sbjct: 176 AQQGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKLMEGTTASVPPQGG---RKH 230
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 231 PQQEFLQVDTTNILFIC 247
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 QGIVYIDEIDKISRKAENPSI--TRDVSGEGVQQALLKL 214
>gi|418323186|ref|ZP_12934474.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Staphylococcus pettenkoferi VCU012]
gi|365230196|gb|EHM71308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Staphylococcus pettenkoferi VCU012]
Length = 420
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 138/234 (58%), Gaps = 25/234 (10%)
Query: 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLD 64
T + DV LL +LEGT +VP + + E++Q+DTTNILF+ GA++G++
Sbjct: 194 TSITRDVSGEGVQQALLKILEGTSASVPPQGGRKHPNQELIQIDTTNILFILGGAFDGIE 253
Query: 65 RLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDL 124
+I RR EK +GF S+E ++DA L+Q+ DL
Sbjct: 254 DVIKRRLGEKVIGFA------------------------SSEASKYDEDALLEQIRPEDL 289
Query: 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEAL 184
+G+IPEF+GR PI+ L+ E L ILT+PKNA+++QY + +D V+L F+ EAL
Sbjct: 290 QSYGLIPEFIGRVPIVANLEQLDVEALKNILTQPKNALVKQYTKMLELDNVELEFTDEAL 349
Query: 185 QAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
AI+ A+E+KTGARGLR+I+E L+D MY+VP SD ++ V ITE T+ T P
Sbjct: 350 AAISNKAIERKTGARGLRSIIEEALIDIMYDVPSSDGVVKVVITEQTITDETEP 403
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
G+ V+ +L++ A F GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 153 GDDVENILLRLIQAADFDVDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
P G ++PN I N +I
Sbjct: 213 LEGTSASVPPQGG---RKHPNQELIQIDTTNILFIL 245
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI RDV GEGVQQ +LK+
Sbjct: 176 KGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKI 212
>gi|86153860|ref|ZP_01072063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|419626482|ref|ZP_14159465.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|419654250|ref|ZP_14185193.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|419666078|ref|ZP_14196123.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|419669613|ref|ZP_14199389.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|419681783|ref|ZP_14210601.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 140-16]
gi|419687029|ref|ZP_14215444.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1798]
gi|419690078|ref|ZP_14218293.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1893]
gi|85842821|gb|EAQ60033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|380603263|gb|EIB23388.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380631584|gb|EIB49766.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|380641884|gb|EIB59195.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|380646766|gb|EIB63715.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|380657276|gb|EIB73358.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 140-16]
gi|380663113|gb|EIB78774.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1798]
gi|380669638|gb|EIB84915.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1893]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|57237331|ref|YP_178344.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni RM1221]
gi|384442613|ref|YP_005658865.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni S3]
gi|419629155|ref|ZP_14161890.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 60004]
gi|419633969|ref|ZP_14166387.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|419638725|ref|ZP_14170777.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 86605]
gi|419645885|ref|ZP_14177365.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 53161]
gi|419647883|ref|ZP_14179236.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|419695943|ref|ZP_14223822.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23210]
gi|57166135|gb|AAW34914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni RM1221]
gi|315057700|gb|ADT72029.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni S3]
gi|380608363|gb|EIB28166.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 60004]
gi|380610598|gb|EIB30184.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|380618054|gb|EIB37203.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 86605]
gi|380624598|gb|EIB43241.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 53161]
gi|380627104|gb|EIB45522.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380676173|gb|EIB91058.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni LMG 23210]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|385812152|ref|YP_005848543.1| ATP-dependent Clp protease ATP-binding subunit ClpX, partial
[Lactobacillus fermentum CECT 5716]
gi|299783051|gb|ADJ41049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
fermentum CECT 5716]
Length = 290
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +QVDT NILF+ GA++G++ ++ R +K +GFG
Sbjct: 84 LLKILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFG 143
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E D EK+ L+ V DL+ FG+IPEF+GR P+
Sbjct: 144 TDSKEI---------------------NDVTEKN-ILQHVIPEDLLKFGLIPEFIGRLPV 181
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LVRILTEPKNA+++QYQ L +D +L F+ ALQA+A++A+++ TGAR
Sbjct: 182 MTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMAKMAIDRNTGAR 241
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E ++ D M+++P D++ V I ++ V K+TAP Y+
Sbjct: 242 GLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKHTAPEYV 283
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 28 GEDVENIILKLLQAADFDIDRAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 87
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 88 LEGTIANVPPQGG---RKHPQQEFIQVDTKNILFI 119
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 51 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 87
>gi|283955698|ref|ZP_06373189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1336]
gi|283792653|gb|EFC31431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1336]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|419682694|ref|ZP_14211420.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1213]
gi|380661164|gb|EIB77080.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. jejuni 1213]
Length = 407
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 208 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 268 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 302 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 362 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 173 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 229
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 230 QEFIQIDTSNILFVC 244
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 175 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 211
>gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Hyphomicrobium denitrificans ATCC 51888]
Length = 415
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 22/198 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++ISRR +GF
Sbjct: 205 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISRRGKGSSIGFS 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T RR + L+ VE DL+ FG+IPEF+GR P+
Sbjct: 265 ARVTGPDERRTGDI----------------------LRGVEPEDLLKFGLIPEFIGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+++QYQ LF M+ V LT + +AL+AI+R A+E+KTGAR
Sbjct: 303 IATLEDLDEAALVQILTEPKNAIVKQYQRLFEMEDVKLTITLDALRAISRKAIERKTGAR 362
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+IME +LLD+MY++P
Sbjct: 363 GLRSIMEGILLDTMYDLP 380
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 207 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 241
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 172 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 208
>gi|417120998|ref|ZP_11970452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
coli 97.0246]
gi|386148728|gb|EIG95163.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
coli 97.0246]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P DI V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDIEKVVIDESVIDGQSKPLLIYG 414
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|386748933|ref|YP_006222140.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
cetorum MIT 00-7128]
gi|384555176|gb|AFI03510.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
cetorum MIT 00-7128]
Length = 448
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 135/222 (60%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 243 LLKIIEGSVVNIPPKGGRKHPDGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 301
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++ L E DL+++G+IPE +GR +
Sbjct: 302 --THEKMSK---------------------KEQEEILHLAETHDLVNYGLIPELIGRLHV 338
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 339 LSTLDSISLEAMVEILQKPKNALIKQYQQLFRMDEVDLIFEEEAIKKIAQLALERKTGAR 398
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E LD M+++P V IT+D VLK P ++
Sbjct: 399 GLRAIIEDFCLDIMFDLPKLKGCEVRITKDCVLKQAEPLIVK 440
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ + P G ++P+
Sbjct: 208 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGG---RKHPD 264
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 265 GNFIQIDTSDILFIC 279
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 210 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 246
>gi|410995554|gb|AFV97019.1| hypothetical protein B649_03525 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 410
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG +VN+P K + + +Q+DT+ ILF+ GA++GL +++ R+K + +GFG
Sbjct: 206 LLKIIEGAVVNIPPKGGRKHPNQDFIQIDTSGILFICGGAFDGLGQILERKKGKNVMGFG 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+R+ + D D+F + VE DL+ +G+IPE +GR PI
Sbjct: 266 HD------KRSTTDID-----------------DSF-ENVEPDDLVSYGLIPELIGRLPI 301
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + + +E +VRILTEPKN++++QY LF +D V+LTF EAL AIA AL +KTGAR
Sbjct: 302 IASLNKITEEEMVRILTEPKNSLVKQYTKLFAIDDVELTFDNEALNAIAAKALARKTGAR 361
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLRAIME + D+MYE+P + V IT++ V +N +P YI+
Sbjct: 362 GLRAIMEETMGDTMYELPEYNGYEVLITKEVVEENVSPVYIK 403
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ + P G ++PN
Sbjct: 171 AQQGIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGG---RKHPN 227
Query: 339 TGYIW 343
+I
Sbjct: 228 QDFIQ 232
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSALAAFGI 284
+GIVF+DE+DKI + + RDV GEGVQQ +LK+ A I
Sbjct: 173 QGIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNI 217
>gi|433603210|ref|YP_007035579.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Saccharothrix
espanaensis DSM 44229]
gi|407881063|emb|CCH28706.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Saccharothrix
espanaensis DSM 44229]
Length = 426
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ +GA+ GL+++I R ++ LGFG
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIQDRVGKRGLGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A R + D A+ A E DLI FG+IPEF+GR P+
Sbjct: 273 AEV------RTKAEVDAADYYADSMPE----------------DLIKFGLIPEFIGRLPM 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++E LVRILTEPKNA+++QYQ LF MD V+L F+ A++A+A A+ + TGAR
Sbjct: 311 VASVTSLDKESLVRILTEPKNALVKQYQKLFEMDGVELEFTKTAMEAVADQAILRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MY++P +D+ V ITE TV +N P+ +
Sbjct: 371 GLRAIMEEVLLPVMYDIPSRTDVAKVVITEQTVKENVNPTIV 412
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 216
>gi|297517735|ref|ZP_06936121.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
OP50]
Length = 334
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 121 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 180
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 181 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 219
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 220 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 279
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 280 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 324
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 88 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQVLLKL 124
>gi|126668932|ref|ZP_01739873.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
gi|126626595|gb|EAZ97251.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
Length = 427
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QV+T+NILF+ GA+ GL+++I +R +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVNTSNILFICGGAFAGLEKVIQQRSARSSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V+++++ K +K V+ DL+ FG+IPEFVGR P+
Sbjct: 273 --------------------SAEVASKDNIKSAGEIIKDVQTEDLVKFGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L++ILTEPKNA+ +QYQ LF M+ V+L F EAL+A+AR A E+ TGAR
Sbjct: 313 VATLTELDEDALIQILTEPKNALTKQYQKLFEMEGVELDFREEALRAVARKAKERNTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V + E + ++ P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEQDVCKVVVDESVISGDSEPFKI 414
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>gi|114777029|ref|ZP_01452049.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
ferrooxydans PV-1]
gi|114552550|gb|EAU55010.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
ferrooxydans PV-1]
Length = 423
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ VP + + + E +QVDTTNILFV GA+ GL+++I + ++ +GFG
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTTNILFVLGGAFAGLEKMIESKGKQRSIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ED K+ L VE DLI FG+IPE VGR P
Sbjct: 271 AKVSS----------------------EDEKDIGEILSHVEPEDLIKFGLIPELVGRLPA 308
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++ L+RIL EPKNA+I+QYQ L D V+L+FS +AL+AIA AL +KTGAR
Sbjct: 309 VATLGNLDKAALLRILKEPKNALIKQYQALMQYDGVELSFSDDALEAIAEKALARKTGAR 368
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+IMES++LD MY++PG D+ + D V + P +
Sbjct: 369 GLRSIMESVMLDVMYDIPGMPDVEQCVVNADAVEGRSKPVLV 410
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GIV++DEVDK+ G RDV GEGVQQ +LK+
Sbjct: 155 GEDVENIILKLLQAADYDVDKAQRGIVYIDEVDKLSRKAEGPSITRDVSGEGVQQALLKL 214
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P ++ N ++
Sbjct: 215 IEGTVAAVPPQGG---RKHPQQEFLQVDTTNILFVL 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDK+ G RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEVDKLSRKAEGPSITRDVSGEGVQQALLKL 214
>gi|331695809|ref|YP_004332048.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
dioxanivorans CB1190]
gi|326950498|gb|AEA24195.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
dioxanivorans CB1190]
Length = 426
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ +GA+ GL+++I R + LGFG
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIGDRVGRRGLGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ D + ++F + DLI FG+IPEF+GR P+
Sbjct: 273 AE---------------------IRSKTDLESSESFADTM-PEDLIKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ SL++E LV+ILTEP+NA+++QY+ LF MD V+L F+ +AL+A+A A+ + TGAR
Sbjct: 311 VASVTSLDKEALVKILTEPRNALVKQYRKLFEMDGVELEFTDDALEAVADQAILRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME +LL MY++P D+ V +TEDTV N P+ +
Sbjct: 371 GLRAIMEEVLLPVMYDIPSRDDVAKVVVTEDTVRSNVNPTIV 412
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N +I
Sbjct: 215 KILEGTTASVPPQGG---RKHPHQEFIQIDTTNVLFI 248
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 216
>gi|114567170|ref|YP_754324.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114338105|gb|ABI68953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 416
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 136/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DT+NILF+ GA+ G+D++I R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTSNILFICGGAFEGIDKIIENRVGQKVMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ + K+ L + +DL+ +G+IPEFVGR PI
Sbjct: 268 A--------------DIKSR--------EEKKIGEILNMILPQDLLKYGLIPEFVGRVPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+ + L+ ILTEPKNA+++QY+ LF +D VDL F +ALQAIA AL + TGAR
Sbjct: 306 IVTLEALDMDALISILTEPKNALVKQYKKLFELDGVDLEFKEDALQAIADEALRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAP 237
GLRAI+E ++L+ MYE+P D+ V IT D + K P
Sbjct: 366 GLRAIIEDIMLEVMYEIPSRLDVTKVAITRDVIEKKEKP 404
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQSADYDIEKAEKGIIYIDEIDKIARKTDNPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTSNILFIC 244
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKTDNPSIT--RDVSGEGVQQALLKI 211
>gi|218549894|ref|YP_002383685.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
fergusonii ATCC 35469]
gi|422804517|ref|ZP_16852949.1| ATP-dependent Clp protease [Escherichia fergusonii B253]
gi|424817251|ref|ZP_18242402.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
fergusonii ECD227]
gi|226706591|sp|B7LME1.1|CLPX_ESCF3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|218357435|emb|CAQ90074.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
protease [Escherichia fergusonii ATCC 35469]
gi|324114665|gb|EGC08633.1| ATP-dependent Clp protease [Escherichia fergusonii B253]
gi|325498271|gb|EGC96130.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
fergusonii ECD227]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIEGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|357142782|ref|XP_003572692.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
[Brachypodium distachyon]
Length = 548
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 136/198 (68%), Gaps = 15/198 (7%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+V+VPEK + R RG+ +Q+DT NILF+ GA+ L++ IS R+++ +GF
Sbjct: 293 LLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFQ 352
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP + R S+ + A +++ L+ VE+ DLI +G+IPEFVGRFP+
Sbjct: 353 APV--RSNMRTGSVIN-----AEITS--------TLLETVESGDLIAYGLIPEFVGRFPV 397
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ LV +LT+PKNA+ +QY LF M+ V L F+ +AL+ I++ A+ K TGAR
Sbjct: 398 LVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLISKRAISKNTGAR 457
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+ES+L ++MYE+P
Sbjct: 458 GLRSILESVLTEAMYEIP 475
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI ++ RDV GEGVQQ +LK+
Sbjct: 260 QGIVYIDEVDKITKKAESMNLSRDVSGEGVQQALLKM 296
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 283 GIVFLDEVDKI-GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGY 341
GIV++DEVDKI ++ RDV GEGVQQ +LK+ + P G R+P
Sbjct: 261 GIVYIDEVDKITKKAESMNLSRDVSGEGVQQALLKMLEGTVVS-VPEKG--ARRHPRGDN 317
Query: 342 IWYRYPNTGYIW 353
I N +I
Sbjct: 318 IQIDTKNILFIC 329
>gi|301299297|ref|ZP_07205583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300853141|gb|EFK80739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 408
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q+DTTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 209 LLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
V ++++ + ++Q+ DL+ FG+IPEF+GR PI
Sbjct: 269 -----------------------VDSKQEYDPDKSLMQQIIPEDLLKFGLIPEFIGRLPI 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LVRILTEPKNA+I+QYQ L + D V L F +A++ IA LA+E+ TGAR
Sbjct: 306 LTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVLLKFEDDAVKEIAHLAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIR 241
GLR+I+E+ + D M+++P D I V IT+DTV + P ++
Sbjct: 366 GLRSIVEATMRDIMFDIPSEDNIKEVVITKDTVDGKSKPEIVK 408
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 153 GEDVENILLKLLQNADYDVERAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 213 LEGTIANVPPQGG---RKHPQQEFIQIDTTNILFI 244
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 212
>gi|146307079|ref|YP_001187544.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mendocina ymp]
gi|421501786|ref|ZP_15948743.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mendocina DLHK]
gi|166214806|sp|A4XTZ6.1|CLPX_PSEMY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|145575280|gb|ABP84812.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
mendocina ymp]
gi|400347529|gb|EJO95882.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mendocina DLHK]
Length = 426
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQARSTKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++++ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------EVRSKQEGKKIGESLREVEPDDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 311 IATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAQRALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + ++ P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSKPLLI 412
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|153951402|ref|YP_001398676.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
jejuni subsp. doylei 269.97]
gi|152938848|gb|ABS43589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
jejuni subsp. doylei 269.97]
Length = 406
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 26/222 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + E +Q+DT+NILFV GA++GL+ ++ R+ +K +GF
Sbjct: 207 LLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFF 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A+E+NK A L+++E DL+ FG+IPE +GR +
Sbjct: 267 D-----------------------DAKEENK---ALLEKIEPDDLVHFGLIPELIGRLHV 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ + LN+E +VRILTEPKNA+I+QYQ LF +D V+L F +AL+AIA+LALE+KTGAR
Sbjct: 301 IASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGAR 360
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+E+P + IT++ V N I+
Sbjct: 361 GLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKALLIK 402
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++PN
Sbjct: 172 AQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGG---RKHPN 228
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 229 QEFIQIDTSNILFVC 243
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 174 KGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 210
>gi|386703657|ref|YP_006167504.1| ATP-dependent Clp protease ATP-binding subunit clpX, partial
[Escherichia coli P12b]
gi|383101825|gb|AFG39334.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
coli P12b]
Length = 283
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 70 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 129
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 130 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 168
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 169 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 228
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 229 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 273
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 37 RGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 73
>gi|390939368|ref|YP_006403105.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Sulfurospirillum barnesii SES-3]
gi|390192475|gb|AFL67530.1| endopeptidase Clp ATP-binding regulatory subunit ClpX
[Sulfurospirillum barnesii SES-3]
Length = 412
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 24/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + + +Q+DTTNILFV +GA++GL+ ++ RR + LGF
Sbjct: 209 LLKIIEGSVVNIPPKGGRKHPNQDFIQIDTTNILFVCAGAFDGLEEIVKRRIGKNVLGF- 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+R S + + VE DL+ +G+IPE +GR +
Sbjct: 268 -----EQEKRTKS------------------QDEGLFDLVEPDDLVHYGLIPELIGRLHV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
S+ +E +VRILTEPKNA+ +QYQ LF +D V+LTF EAL+A+A LA+++KTGAR
Sbjct: 305 SAKLSSITKEDMVRILTEPKNAIYKQYQKLFAIDTVELTFEKEALEAVAELAIKRKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
GLR+IME +++D MYE+P + V +T+D V K P YI+
Sbjct: 365 GLRSIMEEMMVDVMYELPELEGYEVVVTKDAVQKGEKPLYIK 406
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ + P G ++PN
Sbjct: 174 AEQGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGG---RKHPN 230
Query: 339 TGYIWYRYPNTGYIW 353
+I N ++
Sbjct: 231 QDFIQIDTTNILFVC 245
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 176 QGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKI 212
>gi|330503118|ref|YP_004379987.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mendocina NK-01]
gi|328917404|gb|AEB58235.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
mendocina NK-01]
Length = 426
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GL+++I R + +GFG
Sbjct: 212 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQARSTKGGIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++++ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------EVRSKQEGKKIGESLREVEPDDLVKFGLIPEFVGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ LV+ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 311 IATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAQKALERKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 371 GLRSILEGILLDTMYEIPSQQDVSKVVIDESVIEGTSKPLLI 412
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 177 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 231
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 232 PQQEFLQVDTRNILFIC 248
>gi|325290595|ref|YP_004266776.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Syntrophobotulus glycolicus DSM 8271]
gi|324965996|gb|ADY56775.1| ATP-dependent Clp protease ATP-binding subunit ClpX
[Syntrophobotulus glycolicus DSM 8271]
Length = 417
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 139/223 (62%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFIVGGAFDGIEKIIQNRTGKKTMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + + L L+Q+ DL+ +G+IPEFVGR P+
Sbjct: 268 AEIQKKSEKNVGEL----------------------LRQIMPGDLLKYGLIPEFVGRIPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+Q+ LVRILTEPKNA+++QY+ L MD V L F+ +AL+AIA A+ + TGAR
Sbjct: 306 VVTLEALDQDALVRILTEPKNALVKQYEKLLEMDGVQLEFTEDALKAIAEEAIRRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLRAI+E +L+ MY++P +D+ + +++++K P I+
Sbjct: 366 GLRAIVEETMLNVMYDIPTRTDVTKCVVNKESIVKKADPELIK 408
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQASDFDIEKAERGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFI 243
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|320102131|ref|YP_004177722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
pallida ATCC 43644]
gi|319749413|gb|ADV61173.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
pallida ATCC 43644]
Length = 478
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 125/198 (63%), Gaps = 19/198 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL MLEGT+ NVP + + + +Q+DTTNILF+ G + GLD +I+RR K +GFG
Sbjct: 234 LLKMLEGTVANVPPQGGRKHPEQQYIQMDTTNILFICGGTFVGLDNIIARRIGRKTIGFG 293
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+S R +LADL NQ V + D+++FG+IPEF+GR P+
Sbjct: 294 GAMGDSDSAREKNLADLLNQ-------------------VTSDDVLEFGLIPEFIGRLPV 334
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ P L+ E LV+ILTEP+NA+++QYQ LF M+ L F EAL+ IA LA E+ TGAR
Sbjct: 335 ICPLMPLDVEALVQILTEPRNALVKQYQRLFEMEGAKLQFDSEALREIAILAKERDTGAR 394
Query: 200 GLRAIMESLLLDSMYEVP 217
GLR+I+E +LD M+E+P
Sbjct: 395 GLRSIIEDTMLDIMFELP 412
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A F GIV++DE+DKIG + RDV GEGVQQ +LK+
Sbjct: 178 GEDVENILLKLLHAANFDLEAAQRGIVYIDEIDKIGKTSHNVSITRDVSGEGVQQALLKM 237
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
+ P G ++P YI N +I
Sbjct: 238 LEGTVANVPPQGG---RKHPEQQYIQMDTTNILFIC 270
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKIG + RDV GEGVQQ +LK+
Sbjct: 201 RGIVYIDEIDKIGKTSHNVSITRDVSGEGVQQALLKM 237
>gi|295695313|ref|YP_003588551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kyrpidia
tusciae DSM 2912]
gi|295410915|gb|ADG05407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kyrpidia
tusciae DSM 2912]
Length = 421
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DT+NILF+ GA++GL+++I RR K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTSNILFICGGAFDGLEQIIKRRLGRKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
S E+ G DL+ +D L +V DL+ +G+IPEFVGR P+
Sbjct: 268 --SEEARG------TDLS--------------RDEVLSKVLPEDLLKYGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++ L RIL EPKNA+++QYQ L +D V L F+ EAL IAR A+++ TGAR
Sbjct: 306 ITTLAALDETALKRILLEPKNALVKQYQRLLELDDVQLEFTDEALTEIAREAIKRNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLRAI+E ++LD MYE+P DI +T++TVL +P ++
Sbjct: 366 GLRAIIEGIMLDVMYEIPSRDDITKCVVTKETVLLKESPILVKA 409
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTSNILFIC 244
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|282883080|ref|ZP_06291680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
lacrimalis 315-B]
gi|300813661|ref|ZP_07093983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
sp. oral taxon 836 str. F0141]
gi|281297057|gb|EFA89553.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
lacrimalis 315-B]
gi|300512203|gb|EFK39381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
sp. oral taxon 836 str. F0141]
Length = 409
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 138/223 (61%), Gaps = 24/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDTTNILF+ GA++GL+++I +R + +GF
Sbjct: 206 LLKIIEGTVANVPPQGGRKHPNQEFIQVDTTNILFIVGGAFDGLEKIIEQRTMKSSMGFE 265
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + N E+ A LK+VE DL+ FG+IPE +GR P+
Sbjct: 266 A-----------------------AIYDKNIERKAILKKVETEDLLKFGLIPELIGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LV ILT+PKNA+++QY+ L +D VDL F +AL+ IA+ A+EKK GAR
Sbjct: 303 TITLEELDEDALVEILTKPKNALVKQYKELMKLDNVDLIFDDDALRDIAKKAIEKKAGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR ++E+ +++ MYEVP D++ V +T+ +V AP I+
Sbjct: 363 GLRGVIENTIMNIMYEVPSREDVVGVEVTKASVEGKEAPKLIK 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A + GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 150 GEDVENIILKLIQNADYDIERAEKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKI 209
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN +I N +I
Sbjct: 210 IEGTVANVPPQGG---RKHPNQEFIQVDTTNILFI 241
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 173 KGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKI 209
>gi|384218432|ref|YP_005609598.1| ATP-dependent Clp protease, ATP-binding subunit [Bradyrhizobium
japonicum USDA 6]
gi|354957331|dbj|BAL10010.1| ATP-dependent Clp protease, ATP-binding subunit [Bradyrhizobium
japonicum USDA 6]
Length = 423
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILEAILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|417082905|ref|ZP_11951074.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
cloneA_i1]
gi|355353089|gb|EHG02261.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
cloneA_i1]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|366160316|ref|ZP_09460178.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia sp.
TW09308]
gi|432371212|ref|ZP_19614276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
coli KTE11]
gi|430900425|gb|ELC22444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
coli KTE11]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIEGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|188590512|ref|YP_001921997.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
botulinum E3 str. Alaska E43]
gi|251778366|ref|ZP_04821286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|238691974|sp|B2UX12.1|CLPX_CLOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|188500793|gb|ACD53929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
botulinum E3 str. Alaska E43]
gi|243082681|gb|EES48571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 429
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 138/223 (61%), Gaps = 23/223 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q++T+NILF+ GA++G+D++I R + +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGVDKIIENRTRKSSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E G+ + L LK++ DL+ FG+IPEFVGR PI
Sbjct: 267 A---EIQGKHEKDIGKL-------------------LKEIMPGDLLKFGLIPEFVGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
LV SL+++ L+ ILT+PKNA+++QY+ LF +D V+L F+ EAL +IA A+E+KTGAR
Sbjct: 305 LVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIR 241
GLRAI+E ++ + MYE+P + I V ITE+ + P R
Sbjct: 365 GLRAIIEEMMTEIMYEIPSDEQITKVIITEECIKDKENPQVER 407
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQNADYDVERAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVASVPPQGG---RKHPHQEFIQINTSNILFIC 243
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKI 210
>gi|383771491|ref|YP_005450556.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
sp. S23321]
gi|381359614|dbj|BAL76444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
sp. S23321]
Length = 423
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRSTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILTEPKNA+++QYQ LF M+ ++LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDEASLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARRAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+E++LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILEAILLETMFDLPGLEGVEEVVISREVVEGTARPLYI 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|381401274|ref|ZP_09926183.1| ATP-dependent protease ATP-binding subunit ClpX [Kingella kingae
PYKK081]
gi|380833719|gb|EIC13578.1| ATP-dependent protease ATP-binding subunit ClpX [Kingella kingae
PYKK081]
Length = 422
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 22/224 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + R + + VDT+NILF+ GA+ GLD++I +R + +GFG
Sbjct: 211 LLKLIEGTVANVPPQGGRRNPNQQFIAVDTSNILFICGGAFAGLDKVIRQRTEKGGIGFG 270
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A S +ED++ + F +QVE DLI FG+IPE +GR P+
Sbjct: 271 A--------------------NVHSKDEDSRISELF-EQVEPEDLIRFGLIPELIGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ LVRILTEPKNA+++QYQ LF M+K L +AL+A+A+LA+++KTGAR
Sbjct: 310 LTSLAELDEAALVRILTEPKNALVKQYQALFAMEKKALQIDDDALRAVAQLAMKRKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYIRG 242
GLR+IME LL++MY +P D + + V++N P ++R
Sbjct: 370 GLRSIMERALLETMYLLPTLDDVATVVVNKNVIENQVLPKFLRA 413
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI P I RDV GEGVQQ +LK+ + P G R
Sbjct: 176 AQKGIIYIDEIDKISRKSDSPSI--TRDVSGEGVQQALLKLIEGTVANVPPQGG---RRN 230
Query: 337 PNTGYIWYRYPNTGYIW 353
PN +I N +I
Sbjct: 231 PNQQFIAVDTSNILFIC 247
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 KGIIYIDEIDKISRKSDSPSI--TRDVSGEGVQQALLKL 214
>gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9]
gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9]
Length = 422
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 133/215 (61%), Gaps = 21/215 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ NVP + + E +QVDTTNILF+ GA++GL+++I +R + +GFG
Sbjct: 213 LLKLVEGTVANVPPQGGRKNPNAEFIQVDTTNILFICGGAFDGLEKIIRQRTEKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V+++ D K L+ E DLI FG+IPEF+GR P+
Sbjct: 273 A---------------------EVASKNDQKAVGELLRDTEPEDLIKFGLIPEFIGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+ ILTEPKNA+ +QY+ LF M+ V+L P AL AIA+ AL ++TGAR
Sbjct: 312 VALLEPLDEEALMTILTEPKNALAKQYRKLFEMEGVELDLKPSALLAIAKQALARRTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKN 234
GLR+I+E LLD+MYE+P + + + ++ V+ N
Sbjct: 372 GLRSIVERALLDTMYELPSLENVATVVVDEKVIDN 406
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIIYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 216
>gi|169831634|ref|YP_001717616.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Desulforudis audaxviator MP104C]
gi|169638478|gb|ACA59984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
Desulforudis audaxviator MP104C]
Length = 417
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA+ G+D++I R +K +GFG
Sbjct: 205 LLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILFICGGAFEGIDKIIQSRVAKKTMGFG 264
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T R+ L D+ L+ + +DL+ +G+IPEFVGR P+
Sbjct: 265 AELTLKRDRK---LGDI-------------------LRNILPQDLLKYGLIPEFVGRLPV 302
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V LNQE LVRIL EP+NA+++QY+ LF +D V L F EALQAIA A+ + TGAR
Sbjct: 303 IVTLDPLNQEDLVRILVEPRNALVKQYEKLFEIDGVALEFQEEALQAIAEEAIRRNTGAR 362
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++L+ MY++P D+ I+ +TV+ P I
Sbjct: 363 GLRAILEEIMLNVMYDIPSRGDVAKCTISRETVVNRENPLII 404
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 149 GEDVENILLKLIQAADYDVEKAEKGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 206
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 207 KILEGTVASVPPQGG---RKHPHQEFIQLDTTNILFIC 241
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 172 KGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 208
>gi|417674454|ref|ZP_12323887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
dysenteriae 155-74]
gi|420345497|ref|ZP_14846929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
boydii 965-58]
gi|332085738|gb|EGI90902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
dysenteriae 155-74]
gi|391276381|gb|EIQ35153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
boydii 965-58]
Length = 424
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|374989862|ref|YP_004965357.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
bingchenggensis BCW-1]
gi|297160514|gb|ADI10226.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
bingchenggensis BCW-1]
Length = 428
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 137/222 (61%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT +VP + + E +Q+DTTN+LF+ GA+ GL+++I R K +GFG
Sbjct: 213 LLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + ++ + + D F ++V DL+ FGMIPEF+GR P+
Sbjct: 273 A---------------------TIRSKREIEASDQF-QEVMPEDLVKFGMIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ H+L++E L++IL EP+NA+++QYQ LF +D V+L F AL+AIA A+ + TGAR
Sbjct: 311 ITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELHFDRPALEAIADQAILRGTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +L+ +MYEVP D+ V ITED V N P+ +
Sbjct: 371 GLRAIIEEVLMSAMYEVPSRKDVARVVITEDVVHSNVNPTLV 412
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 280 AAFGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DK+ P I RDV GEGVQQ +LK+ P G ++
Sbjct: 178 AETGIIYIDEIDKVARKSENPSI--TRDVSGEGVQQALLKILEGTTASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYI 352
P+ +I N +I
Sbjct: 233 PHQEFIQIDTTNVLFI 248
>gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX
[Lactococcus lactis subsp. lactis KF147]
gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX
[Lactococcus lactis subsp. lactis KF147]
gi|374673161|dbj|BAL51052.1| ATP dependent Clp protease [Lactococcus lactis subsp. lactis IO-1]
Length = 411
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 25/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + EM+Q+DT NILF+ GA++G++ ++ +R EK +GFG
Sbjct: 208 LLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + L D D++++++ A D+ FG+IPEF+GR PI
Sbjct: 268 ANNKK--------LND----------------DDSYMQEIIAEDIQKFGLIPEFIGRLPI 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L +E L++ILTEPKNA+I+QY+ L D V+L F EAL AIAR A+E+KTGAR
Sbjct: 304 VAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+EVP +I V I E V P IR
Sbjct: 364 GLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKAEPQMIR 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN I N +I
Sbjct: 212 IEGTVASVPPQGG---RKHPNQEMIQIDTKNILFI 243
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
>gi|427439827|ref|ZP_18924391.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus lolii
NGRI 0510Q]
gi|425787959|dbj|GAC45179.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus lolii
NGRI 0510Q]
Length = 418
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q++TTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 213 LLKILEGTIANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
++ S E + ++QV DL+ FG+IPEF+GR PI
Sbjct: 273 TNASTSL-----------------------DESKSLMQQVIPEDLLKFGLIPEFIGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LVRILTEPKNA+++QY+ L +D V+L F+P+AL AIA A+ + TGAR
Sbjct: 310 LTALEKLTEEDLVRILTEPKNALVKQYKALLALDGVELKFTPQALHAIAEQAISRNTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+I+E+++ D M+E+P D + V + + TV+ P
Sbjct: 370 GLRSIIENVMRDIMFEIPSRDNVAKVTVNKKTVVDGVEP 408
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKV-------SALAAFGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 157 GEDVENILLKLLQNADYDVEAAEHGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 217 LEGTIANVPPQGG---RKHPQQEFIQINTTNILFI 248
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 180 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 216
>gi|376259870|ref|YP_005146590.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Clostridium
sp. BNL1100]
gi|373943864|gb|AEY64785.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [Clostridium
sp. BNL1100]
Length = 431
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 27/224 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D++I R +K LGFG
Sbjct: 208 LLKILEGTLASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSLGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A E NK+KD LK + +DL+ FG+IPEFVGR
Sbjct: 268 AKI------------------------ESNKDKDVGQLLKDILPQDLLKFGLIPEFVGRL 303
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PI+V SL++ LV+ILTEPKNA+++QYQ LF MD V L EAL+ IA A+E+ TG
Sbjct: 304 PIVVTLQSLDKNALVQILTEPKNALVKQYQKLFEMDDVILEIQDEALELIAEKAIERNTG 363
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
ARGLRAI+E ++ MY++P +++ I ++ + +++ P I
Sbjct: 364 ARGLRAILEEAMMGVMYDIPSMTNVEKCIIGKEVIAEHSEPEMI 407
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLRLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ L P G ++P+ +I N +I
Sbjct: 210 KILEGTLASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|270291413|ref|ZP_06197635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
acidilactici 7_4]
gi|304385126|ref|ZP_07367472.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
acidilactici DSM 20284]
gi|270280259|gb|EFA26095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
acidilactici 7_4]
gi|304329320|gb|EFL96540.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
acidilactici DSM 20284]
Length = 421
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 24/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + + E +Q++TTNILF+ GA++G++ ++ R +K +GFG
Sbjct: 216 LLKILEGTIANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFG 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
++ S E + ++QV DL+ FG+IPEF+GR PI
Sbjct: 276 TNASTSL-----------------------DESKSLMQQVIPEDLLKFGLIPEFIGRLPI 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L +E LVRILTEPKNA+++QY+ L +D V+L F+P+AL AIA A+ + TGAR
Sbjct: 313 LTALEKLTEEDLVRILTEPKNALVKQYKALLALDGVELKFTPQALHAIAEQAISRNTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAP 237
GLR+I+E+++ D M+E+P D + V + + TV+ P
Sbjct: 373 GLRSIIENVMRDIMFEIPSRDNVAKVTVNKKTVVDGVEP 411
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKV-------SALAAFGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ A GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 160 GEDVENILLKLLQNADYDVEAAEHGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 219
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++P +I N +I
Sbjct: 220 LEGTIANVPPQGG---RKHPQQEFIQINTTNILFI 251
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 183 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 219
>gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Anaerococcus
prevotii DSM 20548]
gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
prevotii DSM 20548]
Length = 404
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 134/213 (62%), Gaps = 27/213 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT NVP + + E +QVDTTNILF+ GA++G++ +I+RR +EK +GFG
Sbjct: 207 LLKLIEGTEANVPPQGGRKHPSQEYIQVDTTNILFILGGAFDGIEDIINRRLSEKTIGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T++A A LK+V DL+ +G+IPEF+GR PI
Sbjct: 267 ASVTKNAS--------------------------ASLKEVNTEDLLKYGLIPEFIGRVPI 300
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L + LV+IL EPKN+ ++QYQ LF +D V LTF EAL+ IA A +KTGAR
Sbjct: 301 VVSLDALEVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDEALEKIAEKAYNQKTGAR 360
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTV 231
GLR IME+LLLD M+E+P D+ V +T++++
Sbjct: 361 GLRTIMENLLLDLMFEIPSIDDLEEVIVTKESI 393
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 254 AVPGIHQLRDVG--GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQ 301
A+ L + G GE V+ +LK+ A + GI+++DE+DKI P I
Sbjct: 137 AIADATSLTEAGYVGEDVENIILKLVQAADYDIDIAERGIIYVDEIDKITRKSENPSIT- 195
Query: 302 LRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
RDV GEGVQQ +LK+ P G ++P+ YI N +I
Sbjct: 196 -RDVSGEGVQQALLKLIEGTEANVPPQGG---RKHPSQEYIQVDTTNILFIL 243
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIIYVDEIDKITRKSENPSIT--RDVSGEGVQQALLKL 210
>gi|84515417|ref|ZP_01002779.1| ATP-dependent protease ATP-binding subunit [Loktanella
vestfoldensis SKA53]
gi|84510700|gb|EAQ07155.1| ATP-dependent protease ATP-binding subunit [Loktanella
vestfoldensis SKA53]
Length = 421
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 144/232 (62%), Gaps = 26/232 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++I+RR +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIARRSKGSGMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + D+ D + + +E DL+ FG+IPEFVGR P+
Sbjct: 269 A-----------DVKDV-----------DERGIGEVFQDLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILT+PKNA+++QYQ LF ++ LTF+ +AL AIA+ A+++KTGAR
Sbjct: 307 IATLTDLDEDALITILTKPKNALVKQYQRLFELENTKLTFTDDALTAIAKRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDK 251
GLR+IME +LLD+M+++PG D +TE V + S ++ ++ D+V K
Sbjct: 367 GLRSIMEGILLDTMFDLPGMDT----VTEVVVNEEAVTSDVQPLMIHDDVKK 414
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>gi|384261375|ref|YP_005416561.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodospirillum
photometricum DSM 122]
gi|378402475|emb|CCG07591.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodospirillum
photometricum DSM 122]
Length = 446
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 234 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGKGSSIGFG 293
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RR + L+ VE DL+ +G+IPEFVGR P+
Sbjct: 294 ADVRDPETRRTGEI----------------------LRNVEPEDLLKYGLIPEFVGRLPV 331
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ LV ILT PKNA+++QYQ LF M+ L+F EAL+ IA+ A+ +KTGAR
Sbjct: 332 LATLDDLDEDALVDILTSPKNALVKQYQKLFEMESTHLSFKDEALRGIAKKAIARKTGAR 391
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME +LLD+M+++PG S + V + ++ V + P +I G
Sbjct: 392 GLRSIMEGILLDTMFDLPGLSGVDEVVVNKEVVDGRSKPLFIYG 435
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 199 AQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKIMEGTVASVPPQGG---RKH 253
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 254 PQQEFLQVDTTNILFIC 270
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 201 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 237
>gi|373857603|ref|ZP_09600344.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus sp.
1NLA3E]
gi|372452735|gb|EHP26205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus sp.
1NLA3E]
Length = 422
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 145/238 (60%), Gaps = 26/238 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G++ +I RR +K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGQKVIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
N+ +S +E L +V DL+ FG+IPEF+GR P+
Sbjct: 268 GTD---------------NKQVDISQKE-------LLGKVLPEDLLRFGLIPEFIGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L+ ILT+PKNA+++QYQ + +D V+L F +AL IA+ A+E+KTGAR
Sbjct: 306 IASLEQLDESALIEILTKPKNALVKQYQKMLELDDVELEFEEKALTEIAKKAIERKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI--RGIVFLDEVDKIGA 254
GLR+I+E ++LD M+++P DI IT++TV++N+ P I G +F DE K A
Sbjct: 366 GLRSIIEGIMLDVMFDLPSRDDISKCIITDETVIENSIPKLILEDGTIF-DEKRKTSA 422
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQSADYDVEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>gi|161504374|ref|YP_001571486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:- str.
RSK2980]
gi|339998421|ref|YP_004729304.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
bongori NCTC 12419]
gi|189044147|sp|A9MM22.1|CLPX_SALAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|160865721|gb|ABX22344.1| hypothetical protein SARI_02485 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|339511782|emb|CCC29491.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
bongori NCTC 12419]
Length = 423
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++I+ R + +GF
Sbjct: 211 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGF 270
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 271 GA---------------------TVKAKSDKASEGELLSQVEPEDLIKFGLIPEFIGRLP 309
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIAR A+ +KTGA
Sbjct: 310 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGA 369
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 370 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 178 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 214
>gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
palustris CGA009]
gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
palustris TIE-1]
gi|61211520|sp|Q6N5L4.1|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|229484081|sp|B3Q7P4.1|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX
[Rhodopseudomonas palustris CGA009]
gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
[Rhodopseudomonas palustris TIE-1]
Length = 424
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V A ED + + F + VE DL+ +G+IPEFVGR P+
Sbjct: 269 --------------------AAQVLAPEDRRTGEIF-RHVEPEDLLKYGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++ L +ILT+PKNA+++QYQ LF M+ V+LTF+ EAL A+AR A+E+KTGAR
Sbjct: 308 VATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES+LL++M+++PG + + V I+ + V P YI
Sbjct: 368 GLRSILESILLETMFDLPGLEGVEEVVISREVVDGTARPLYI 409
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>gi|385830690|ref|YP_005868503.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
lactis subsp. lactis CV56]
gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
lactis subsp. lactis CV56]
Length = 411
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 25/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + EM+Q+DT NILF+ GA++G++ ++ +R EK +GFG
Sbjct: 208 LLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + L D D++++++ A D+ FG+IPEF+GR PI
Sbjct: 268 ANNKK--------LND----------------DDSYMQEIIAEDIQKFGLIPEFIGRLPI 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L +E L++ILTEPKNA+I+QY+ L D V+L F EAL AIAR A+E+KTGAR
Sbjct: 304 VAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+EVP +I V I E V P IR
Sbjct: 364 GLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKAEPQMIR 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN I N +I
Sbjct: 212 IEGTVASVPPQGG---RKHPNQEMIQIDTKNILFI 243
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
>gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis
subsp. lactis Il1403]
gi|13878442|sp|Q9CGE6.1|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis
Il1403]
Length = 411
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 25/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + EM+Q+DT NILF+ GA++G++ ++ +R EK +GFG
Sbjct: 208 LLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + + L D D++++++ A D+ FG+IPEF+GR PI
Sbjct: 268 ANNKK--------LND----------------DDSYMQEIIAEDIQKFGLIPEFIGRLPI 303
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L +E L++ILTEPKNA+I+QY+ L D V+L F EAL AIAR A+E+KTGAR
Sbjct: 304 VAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGAR 363
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
GLR+I+E +++D M+EVP +I V I E V P IR
Sbjct: 364 GLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKAEPQMIR 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 317
GE V+ +LK+ + F GI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 152 GEDVENILLKLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
Query: 318 STSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
+ P G ++PN I N +I
Sbjct: 212 IEGTVASVPPQGG---RKHPNQEMIQIDTKNILFI 243
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGA-VPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI + RDV GEGVQQ +LK+
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKI 211
>gi|423350553|ref|ZP_17328206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Turicella
otitidis ATCC 51513]
gi|404387452|gb|EJZ82570.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Turicella
otitidis ATCC 51513]
Length = 428
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 27/226 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + E +Q+DT+NILF+ +GA+ GLD++I R LGFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDKVIGERAGGSKLGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA A E K + QV DL+ FG+IPEF+GR P+
Sbjct: 279 --------------------SALKPAGEKKKSQGDVYAQVRPEDLVKFGLIPEFIGRLPV 318
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ LVR+LTEP+NA+++QYQ LF MD V+L+F+ EAL A+A LA+E+ GAR
Sbjct: 319 VATVDDLDRDALVRVLTEPRNALVKQYQRLFEMDDVELSFTDEALGAVADLAIERGAGAR 378
Query: 200 GLRAIMESLLLDSMYEVPGSD------ILMVHIT-EDTVLKNTAPS 238
GLRAIME LL+ MYE+P D I H+ E+ V + AP+
Sbjct: 379 GLRAIMEELLVPVMYEIPDRDEPGQVAITAAHVRGEEPVEVDQAPA 424
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GI+++DE+DKI G P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 184 AQRGIIYIDEIDKITRKGDNPSI--TRDVSGEGVQQALLKILEGTVASIPPQGG---RKH 238
Query: 337 PNTGYIWYRYPNTGYI 352
PN +I N +I
Sbjct: 239 PNQEFIQLDTSNILFI 254
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI G P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYIDEIDKITRKGDNPSI--TRDVSGEGVQQALLKI 222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,976,963,755
Number of Sequences: 23463169
Number of extensions: 317215802
Number of successful extensions: 732231
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6418
Number of HSP's successfully gapped in prelim test: 1299
Number of HSP's that attempted gapping in prelim test: 692872
Number of HSP's gapped (non-prelim): 26926
length of query: 408
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 263
effective length of database: 8,957,035,862
effective search space: 2355700431706
effective search space used: 2355700431706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)