BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11091
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 229
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ E + KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 230 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 266
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 267 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 326
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 327 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 367
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPN 338
A GIVF+DE+DKI + + RDV GEGVQQ +LK+ L P G ++P
Sbjct: 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG---RKHPE 192
Query: 339 TGYIWYRYPNTGYIW 353
+I + +I
Sbjct: 193 GNFIQIDTSDILFIC 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQL-RDVGGEGVQQGMLKV 276
+GIVF+DE+DKI + + RDV GEGVQQ +LK+
Sbjct: 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 150 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 210 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 249 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 309 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 353
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 117 RGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++D++DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 115 AQRGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVAAVPPQGG---RKH 169
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ +I
Sbjct: 170 PQQEFLQVDTSKILFIC 186
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 23/225 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ VP + + + E +QVDT+ ILF+ GA+ GLD++IS R + +GF
Sbjct: 150 LLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA V A+ D + L QVE DLI FG+IPEF+GR P
Sbjct: 210 GA---------------------TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTGA
Sbjct: 249 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
RGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 309 RGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 353
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 117 RGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++D++DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 115 AQRGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVAAVPPQGG---RKH 169
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ +I
Sbjct: 170 PQQEFLQVDTSKILFIC 186
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 185 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 244
Query: 189 RLA--LEKKT---GARGLRAIMESLL 209
A + +KT GAR L +ME L+
Sbjct: 245 EAAFRVNEKTENIGARRLHTVMERLM 270
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 248 EVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGG 307
EVD I I L D G + A+ GIVF+DE+DKI G + DV
Sbjct: 95 EVDSI-----IRDLTDSAGGAI-------DAVEQNGIVFIDEIDKI-CKKGEYSGADVSR 141
Query: 308 EGVQQGML 315
EGVQ+ +L
Sbjct: 142 EGVQRDLL 149
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G + DV EGVQ+ +L
Sbjct: 118 GIVFIDEIDKI-CKKGEYSGADVSREGVQRDLL 149
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 378
Query: 189 RLA--LEKKT---GARGLRAIMESLL 209
A + +KT GAR L +ME L+
Sbjct: 379 EAAFRVNEKTENIGARRLHTVMERLM 404
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 315
+ A+ GIVF+DE+DKI G + DV EGVQ+ +L
Sbjct: 245 IDAVEQNGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLL 283
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G + DV EGVQ+ +L
Sbjct: 252 GIVFIDEIDKI-CKKGEYSGADVSREGVQRDLL 283
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEGVNIAFTTDAVKKIA 378
Query: 189 RLA--LEKKT---GARGLRAIMESL 208
A + +KT GAR L + E L
Sbjct: 379 EAAFRVNEKTENIGARRLHTVXERL 403
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 315
+ A+ GIVF+DE+DKI G + DV EGVQ+ +L
Sbjct: 245 IDAVEQNGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLL 283
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G + DV EGVQ+ +L
Sbjct: 252 GIVFIDEIDKI-CKKGEYSGADVSREGVQRDLL 283
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L RILTEP ++ QY+ L + V++ F+ ++ IA
Sbjct: 317 LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIA 376
Query: 189 RLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED 229
A + + GAR L ++E L+ + Y+ SD+ +IT D
Sbjct: 377 EAAWQVNESTENIGARRLHTVLERLMEEISYD--ASDLSGQNITID 420
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 315
+ A+ GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 243 IDAVEQHGIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 281
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 250 GIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 281
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L RILTEP ++ QY+ L + V++ F+ ++ IA
Sbjct: 324 LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIA 383
Query: 189 RLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED 229
A + + GAR L ++E L+ + Y+ SD+ +IT D
Sbjct: 384 EAAWQVNESTENIGARRLHTVLERLMEEISYD--ASDLSGQNITID 427
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 315
+ A+ GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 250 IDAVEQHGIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 288
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 257 GIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 288
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L RILTEP ++ QY+ L + V++ F+ ++ IA
Sbjct: 318 LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIA 377
Query: 189 RLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED 229
A + + GAR L ++E L+ + Y+ SD+ +IT D
Sbjct: 378 EAAWQVNESTENIGARRLHTVLERLMEEISYD--ASDLSGQNITID 421
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 315
+ A+ GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 244 IDAVEQHGIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 282
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGML 274
GIVF+DE+DKI G DV EGVQ+ +L
Sbjct: 251 GIVFIDEIDKI-CKRGESSGPDVSREGVQRDLL 282
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEF+ R ++ FHSL ++ L I++ M Q + + + A +A
Sbjct: 647 PEFINRIDEIIVFHSLEKKHLTEIVS----LMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702
Query: 191 ALEKKTGARGLRAIMESLLLDSMYE 215
++ + GAR LR ++ + D + E
Sbjct: 703 GVDLEYGARPLRRAIQKHVEDRLSE 727
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 153 RILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDS 212
RI+TE A ++ KV E L +AR +L K A L ++ ++DS
Sbjct: 109 RIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAE-LADVLTEAVVDS 167
Query: 213 MYEVPGS----DILMVHITEDTVLKNTAPSYIRGIVF 245
+ + D+ MV I E T S IRG+V
Sbjct: 168 ILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVL 204
>pdb|2P9R|A Chain A, Human Alpha2-Macroglogulin Is Composed Of Multiple
Domains, As Predicted By Homology With Complement
Component C3
pdb|2P9R|B Chain B, Human Alpha2-Macroglogulin Is Composed Of Multiple
Domains, As Predicted By Homology With Complement
Component C3
Length = 102
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 143 FHSLNQELLVRILTEPKNAMI---QQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
FH LN+ + + + +PK I Q +Q+ + + S E Q ++ ++KK+G R
Sbjct: 30 FHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGR 89
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 143 FHSLNQELLVRILTEPKNAMI---QQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
FH LN+ + + + +PK I Q +Q+ + + S E Q ++ ++KK+G R
Sbjct: 132 FHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGR 191
>pdb|1GVM|A Chain A, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|B Chain B, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|C Chain C, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|D Chain D, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|E Chain E, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|F Chain F, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
Length = 136
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 310 VQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYI----WYRYPNTGYIWYRYPNTGYLWTS 365
++ G++ SY ++ WY + ++GY+ W ++ + WY + N+G + T
Sbjct: 1 MKGGIVHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGN--WYWFDNSGEMATG 58
Query: 366 YPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGY 401
+ WY + G + KTG W +Y +T Y
Sbjct: 59 WKKIADKWYYFNEEGAM-----KTG--WVKYKDTWY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,259,505
Number of Sequences: 62578
Number of extensions: 608146
Number of successful extensions: 1594
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 80
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)