BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11091
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2
Length = 633
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>sp|Q5R7N3|CLPX_PONAB ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Pongo abelii GN=CLPX PE=2 SV=1
Length = 633
Score = 298 bits (764), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Rattus norvegicus GN=Clpx PE=2 SV=1
Length = 633
Score = 298 bits (764), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 387
>sp|Q9JHS4|CLPX_MOUSE ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Mus musculus GN=Clpx PE=1 SV=2
Length = 634
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTIVNVPEKNS RKLRGE VQVDTTN+LFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 385 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFG 443
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
PS GRRAA+ ADLAN+S + +D +EKD L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 444 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 503
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L + +AL+AIARLALE+KTGAR
Sbjct: 504 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 563
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
GLR+IME LLL+ M+EVP SDI+ V + ++ V P YIR
Sbjct: 564 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 606
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 36/38 (94%)
Query: 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 351 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 36/36 (100%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVFLDEVDKIG+VPGIHQLRDVGGEGVQQG+LK+
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKL 388
>sp|Q11J59|CLPX_MESSB ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Mesorhizobium sp. (strain BNC1) GN=clpX PE=3 SV=1
Length = 424
Score = 198 bits (503), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT++ILF+ GA+ GL+++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTSSILFICGGAFAGLEKIISDRGKKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A + RRA L L+QVE DL+ FG+IPEFVGR PI
Sbjct: 272 ASVSSPEDRRAGEL----------------------LRQVEPEDLLKFGLIPEFVGRLPI 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E LV+ILTEPKNA+++QYQ LF M+ V+LTF AL+AIAR A+E+KTGAR
Sbjct: 310 LATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAIARKAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+ED V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVQEVVISEDVVAGSARPLYI 411
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ + +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTSSILFIC 248
>sp|A4XHW1|CLPX_CALS8 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpX PE=3 SV=1
Length = 433
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 149/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I RR EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIERRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F EAL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K+ P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKVQRKPRL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIVYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>sp|C3PI25|CLPX_CORA7 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM
44827 / CN-1) GN=clpX PE=3 SV=1
Length = 431
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +P + + E +Q+DTTNILF+ +GA+ GLD++IS R +K +GFG
Sbjct: 223 LLKILEGTVAAIPPQGGRKHPNQEFIQLDTTNILFIVAGAFAGLDKVISERVGKKGVGFG 282
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +D KE F QV DL+ FG+IPEF+GR P+
Sbjct: 283 AKLET----------------------KDEKESVDFFSQVRPEDLVKFGLIPEFIGRLPV 320
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ +L++E LV++L EPKN++++QYQ LF+MD +L F EAL+AIA LALE+KTGAR
Sbjct: 321 VATVDNLDRESLVKVLVEPKNSLVKQYQRLFSMDGAELHFEDEALEAIAELALERKTGAR 380
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P DI VHIT+D V P ++
Sbjct: 381 GLRAIMEELLVPIMYDLPDREDIASVHITQDCVTDGGEPEFV 422
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 189 RLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDE 248
R+ E+ G G R + D E+ S+ILM+ T + +Y+
Sbjct: 99 RIKAEEAAGLEGRRKKAQ----DEEVEISKSNILMLGPT------GSGKTYL-AQTLARL 147
Query: 249 VDKIGAVPGIHQLRDVG--GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AV 296
+D A+ L + G GE V+ +LK+ A F GI+++DEVDKI
Sbjct: 148 LDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQHGIIYVDEVDKISRKSEN 207
Query: 297 PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
P I RDV GEGVQQ +LK+ + P G ++PN +I N +I
Sbjct: 208 PSI--TRDVSGEGVQQALLKILEGTVAAIPPQGG---RKHPNQEFIQLDTTNILFI 258
>sp|Q982V5|CLPX_RHILO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
loti (strain MAFF303099) GN=clpX PE=3 SV=1
Length = 424
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 144/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTANILFICGGAFAGLDKIISDRGRKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V++ ED + D F +QVE DL+ FG+IPEFVGR P+
Sbjct: 272 A---------------------TVASPEDRRTGDIF-RQVEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+++QYQ LF M+ VDLTF AL AIA+ A+E+KTGAR
Sbjct: 310 LATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME++LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 370 GLRSIMEAILLDTMFELPALEGVREVVISEEVVTGSARPLYI 411
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQSADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTANILFIC 248
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>sp|B0KBA3|CLPX_THEP3 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpX PE=3 SV=1
Length = 424
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>sp|B0K532|CLPX_THEPX ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thermoanaerobacter sp. (strain X514) GN=clpX PE=3
SV=1
Length = 424
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G++++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E R+ L+++ L + +DL+ FGMIPEF+GR PI
Sbjct: 267 A---EVQSRKEKDLSEI-------------------LSHIMPQDLLKFGMIPEFIGRVPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L+++ LVRILTEPKNA+ +QY+ LF +D V L F +AL IA +ALE+KTGAR
Sbjct: 305 VVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIADMALERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MYE+P SD I ITE+TVLK P+ +
Sbjct: 365 GLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKKAPPTLV 406
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>sp|B9MQ33|CLPX_CALBD ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=clpX PE=3 SV=1
Length = 433
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 148/242 (61%), Gaps = 28/242 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA+ G++++I +R EK LGF
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFN 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + L+Q+ +DL+ FGMIPEF+GR PI
Sbjct: 269 AKIESKKEKKIGDI----------------------LRQIMPQDLLKFGMIPEFIGRVPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++E L++ILTEPKNA+++QYQ LF MD V+L F +AL+AIA A+E+ TGAR
Sbjct: 307 IVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIADKAIERNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGI 258
GLRAIME ++LD M+E+P +D I V IT+ VLK P IV ++E K P +
Sbjct: 367 GLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKEDKP-----IVIINENKKAQKRPKL 421
Query: 259 HQ 260
Q
Sbjct: 422 KQ 423
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLRLIQNADYDIERAERGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 245
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIIYIDEIDKIARKSDNPSI--TRDVSGEGVQQALLKI 212
>sp|A3DJ11|CLPX_CLOTH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=clpX PE=3
SV=1
Length = 431
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 145/222 (65%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++G++++I R +K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKIIQNRIGKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ES + A++ ++ LK + +DL+ FG+IPEFVGR P+
Sbjct: 268 A-KIESP--KKANVGEI-------------------LKNILPQDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V HSL++E LV+ILTEPKNA+++QYQ LF MD V L F EA++AIA A+E+ TGAR
Sbjct: 306 IVTLHSLDREALVKILTEPKNALVKQYQKLFEMDDVILEFEKEAIEAIADKAIERNTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLRAI+E ++LD MY++P + + IT+DTV K P+ I
Sbjct: 366 GLRAILEEIMLDVMYDIPSQENVEKCIITKDTVEKMVPPTVI 407
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQIDTTNILFIC 244
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>sp|Q8RC24|CLPX_THETN ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=clpX PE=3 SV=1
Length = 425
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 136/224 (60%), Gaps = 27/224 (12%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI NVP + + E +Q+DTTNILF+ GA+ G+D++I R +K LGFG
Sbjct: 207 LLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIDKIIESRIGKKSLGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDA--FLKQVEARDLIDFGMIPEFVGRF 137
A + KEKD LK + DL+ FGMIPEF+GR
Sbjct: 267 AEV------------------------QSKKEKDVGEILKHIMPEDLLKFGMIPEFIGRV 302
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
PI+V L ++ LVRILTEPKNA+++QY+ LF MD V L F +AL IA +ALE+ TG
Sbjct: 303 PIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEKKALDLIAEMALERGTG 362
Query: 198 ARGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
ARGLRAI+E ++LD MYE+P + I ITE+TV K P+ +
Sbjct: 363 ARGLRAILEDIMLDVMYEIPSDETIEKCIITEETVRKIAPPTLV 406
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +L++ A + GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLRLIQAADYDIERAEKGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTIANVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 210
>sp|A1U1Q2|CLPX_MARAV ATP-dependent Clp protease ATP-binding subunit ClpX OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX
PE=3 SV=1
Length = 427
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA+ GLD++I R +GF
Sbjct: 214 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTGNILFICGGAFAGLDKVIQERSERSSIGF- 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V +++D+K +++VE DL+ FG+IPEFVGR P+
Sbjct: 273 --------------------SATVKSQDDSKSTGDIIREVETEDLVKFGLIPEFVGRLPV 312
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E LV+ILTEPKNA+ +QYQ LF M+ V+L F +AL+A+AR A+E+KTGAR
Sbjct: 313 VATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGAR 372
Query: 200 GLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240
GLR+IME+ LLD+MY++P D+ V I E + ++ P I
Sbjct: 373 GLRSIMEATLLDTMYQIPSEHDVSKVVIDESVIKGDSEPFKI 414
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 179 AQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 233
Query: 337 PNTGYIWYRYPNTGYIWY 354
P ++ +TG I +
Sbjct: 234 PQQEFLQV---DTGNILF 248
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 217
>sp|Q0I4F0|CLPX_HAES1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus
somnus (strain 129Pt) GN=clpX PE=3 SV=1
Length = 414
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE--KYLG 77
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R N K +G
Sbjct: 209 LLKLVEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKIIEKRTNTGGKGIG 268
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGA D+ VS E KQVE DL+ FG+IPEF+GR
Sbjct: 269 FGA--------------DVRIDEEKVSLTE-------LFKQVEPDDLMKFGLIPEFIGRL 307
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ P L++E LV+ILTEPKNA+ +QYQ+LF+++ ++L F+ EAL A+A+ AL +KTG
Sbjct: 308 PVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTG 367
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
ARGLR+I+E+LLLD+MY++P + L V + E+TV +N AP
Sbjct: 368 ARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTENKAP 408
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVP 297
+GI+++DE+DKI P I RDV GEGVQQ +LK+ + ++P
Sbjct: 176 QGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALLKLVE------------GTVASIP 221
Query: 298 GIHQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ ML+V TS + +
Sbjct: 222 P-----QGGRKHPQQEMLRVDTSKILF 243
>sp|B1Z9C8|CLPX_METPB ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=clpX PE=3 SV=1
Length = 423
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 143/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEVF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG D + V I + V + P +I G
Sbjct: 368 GLRSILETILLDTMYDLPGLDSVEQVVIGPEVVDGKSKPLFIHG 411
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|A9W5F6|CLPX_METEP ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium extorquens (strain PA1) GN=clpX PE=3
SV=1
Length = 423
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 142/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEVF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P +I G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLFIHG 411
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|B7KNT1|CLPX_METC4 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB
13688) GN=clpX PE=3 SV=1
Length = 423
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 142/224 (63%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A +V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------SVQAPDDRRTGEVF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++E L +IL EPKNA+++QYQ LF M+ V+LTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P +I G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLFIHG 411
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=clpX PE=3 SV=1
Length = 411
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 146/220 (66%), Gaps = 23/220 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGTI ++P + + + EMV++DT+ ILF+ GA+ GLD++I +R + +GF
Sbjct: 209 LLKLIEGTIASIPPQGGRKHPQQEMVKLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGF 268
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
+A V +E + +QVE DL+ FG+IPEF+GR P
Sbjct: 269 ---------------------NAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
++ P L+++ L++ILT+PKNA+I+QYQ LF ++KV+L F+PEAL+A+A+ ALE+KTGA
Sbjct: 308 MIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
RGLR+I+E++LLD+MY++P ++ V + E T++ N AP
Sbjct: 368 RGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 241 RGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 176 KGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 280 AAFGIVFLDEVDKIG-AVPGIHQLRDVGGEGVQQGMLKV 317
A GI+++DE+DKI G RDV GEGVQQ +LK+
Sbjct: 174 AEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKL 212
>sp|B0UD19|CLPX_METS4 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium sp. (strain 4-46) GN=clpX PE=3 SV=1
Length = 423
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RAVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L RIL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+ES+LL++MY++PG D + V I + V P YI G
Sbjct: 368 GLRSILESILLETMYDLPGLDSVEQVVIGPEVVEGKARPLYIHG 411
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|B1LW29|CLPX_METRJ ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium radiotolerans (strain ATCC 27329 /
DSM 1819 / JCM 2831) GN=clpX PE=3 SV=1
Length = 423
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 140/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS+R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RSVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L +IL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDEALSLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
GLR+I+E++LLD+MY++PG + V I + V + P YI G
Sbjct: 368 GLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGKSRPLYIHG 411
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|B2IGP2|CLPX_BEII9 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Beijerinckia
indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB
8712) GN=clpX PE=3 SV=1
Length = 421
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKTTSIGF- 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A+V A +D + + F ++VE DL+ FG+IPEFVGR P+
Sbjct: 269 --------------------AASVQAPDDRRTGEIF-RKVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L +ILTEPKNA+++QYQ LF M+ +LTF EAL +A+ A+E+KTGAR
Sbjct: 308 IATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IMES+LLD+M+++PG D + V I D V + P YI
Sbjct: 368 GLRSIMESILLDTMFDLPGLDSVEQVVIGPDVVEGKSRPLYI 409
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|Q2RL30|CLPX_MOOTA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpX PE=3 SV=1
Length = 419
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q+DTTNILF+ GA++GLD++I R ++K +GFG
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGLDKIIKNRISQKTMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E G+ + D+ LKQV DL+ +G+IPEFVGR P+
Sbjct: 268 A---EIRGKNDVQVGDI-------------------LKQVLPVDLLKYGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L++ L+R+LTEP+NA+++QYQ LF MD V L F +AL IAR A++++TGAR
Sbjct: 306 IVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAREAIKRETGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++LD MYE+P ++I IT+D VL+ P
Sbjct: 366 GLRAILEEIMLDVMYEIPSRNNISKCIITKDVVLRKEEP 404
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDVEKAEKGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTIASVPPQGG---RKHPHQEFIQLDTTNILFIC 244
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIVYIDEIDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>sp|B0UW19|CLPX_HAES2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus
somnus (strain 2336) GN=clpX PE=3 SV=1
Length = 414
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 145/221 (65%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE--KYLG 77
LL ++EGT+ ++P + + + EM++VDT+ ILF+ GA+ GLD++I +R N K +G
Sbjct: 209 LLKLVEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGAFAGLDKIIEKRTNTSGKGIG 268
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGA D+ VS E KQVE DL+ FG+IPEF+GR
Sbjct: 269 FGA--------------DVRIDEEKVSLTE-------LFKQVEPDDLMKFGLIPEFIGRL 307
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ P L++E LV+ILTEPKNA+ +QYQ+LF+++ ++L F+ EAL A+A+ AL +KTG
Sbjct: 308 PVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTG 367
Query: 198 ARGLRAIMESLLLDSMYEVPGSDILM-VHITEDTVLKNTAP 237
ARGLR+I+E+LLLD+MY++P + L V + E+TV +N P
Sbjct: 368 ARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTENKVP 408
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVP 297
+GI+++DE+DKI P I RDV GEGVQQ +LK+ + ++P
Sbjct: 176 QGIIYIDEIDKITRKSENPSI--TRDVSGEGVQQALLKLVE------------GTVASIP 221
Query: 298 GIHQLRDVGGEGVQQGMLKVSTSYLFY 324
G + QQ ML+V TS + +
Sbjct: 222 P-----QGGRKHPQQEMLRVDTSKILF 243
>sp|A8MIS7|CLPX_ALKOO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Alkaliphilus
oremlandii (strain OhILAs) GN=clpX PE=3 SV=1
Length = 426
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+D +I +R ++K +GFG
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIDSIIQKRTSKKSMGFG 267
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A E ++ L L LKQ++ DL+ FG+IPEFVGR P+
Sbjct: 268 A---EIESKQVLDLGSL-------------------LKQIQPEDLLKFGLIPEFVGRLPV 305
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E L++ILTEPKNA+ +QY+ LF +D V L EAL+ IA+ A+E+KTGAR
Sbjct: 306 VVTLEQLDEEALIKILTEPKNALTKQYKRLFEIDGVHLEIEEEALRLIAKKAIERKTGAR 365
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E +++D+MYE+P DI V IT + + +N P +
Sbjct: 366 GLRGIVEGIMMDTMYEIPSRDDIEKVIITAEAITENKEPKIL 407
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 152 GEDVENILLKLIQAADYDIERAEKGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 209
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P+ +I N +I
Sbjct: 210 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFI 243
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 175 KGIIYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 211
>sp|B8IN27|CLPX_METNO ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=clpX PE=3 SV=1
Length = 423
Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 23/224 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+R+IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F + VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RNVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L RIL EPKNA+++QYQ LF M+ VDLTF EAL +AR A+E+KTGAR
Sbjct: 308 LATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRG 242
GLR+I+ES+LL++MY++PG D + V I + V P YI G
Sbjct: 368 GLRSILESILLETMYDLPGLDSVEQVVIGPEVVDGKARPLYIHG 411
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|Q2K9U6|CLPX_RHIEC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1
Length = 425
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|B3PVY5|CLPX_RHIE6 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
etli (strain CIAT 652) GN=clpX PE=3 SV=1
Length = 425
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|B5ZY09|CLPX_RHILW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=clpX PE=3
SV=1
Length = 425
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVKAQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|A7ILC7|CLPX_XANP2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=clpX PE=3
SV=1
Length = 422
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 28/237 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R K +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISSRSKGSTSIGF 269
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
A V+ ED + + F ++VE DL+ +G+IPEF+GR P
Sbjct: 270 ---------------------QAKVAPPEDRRPGEVF-REVEPEDLLKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L L++E L +IL+EPKNA+++QYQ LF M+ VDLT EAL AIAR A+E+KTGA
Sbjct: 308 VLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
RGLR+IMES+LLD+M+++PG + + V I+ + V ++ P YI + D V GA
Sbjct: 368 RGLRSIMESILLDTMFDLPGLEGVEEVVISREVVEQSARPLYI----YADRVGDAGA 420
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|C3MA45|CLPX_RHISN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
sp. (strain NGR234) GN=clpX PE=3 SV=1
Length = 425
Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+LTF +AL+ IA+ A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAKRAIIRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|Q8UFY5|CLPX_AGRT5 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=clpX PE=3 SV=1
Length = 425
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 143/222 (64%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V AE+D + + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 A---------------------TVKAEDDRRVGE-VLRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+LTF +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYI 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|A6TM62|CLPX_ALKMQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Alkaliphilus
metalliredigens (strain QYMF) GN=clpX PE=3 SV=1
Length = 420
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + E +Q+DTTNILF+ GA++G+++LI +R + +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKLIQKRTGKTSMGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A ++ + D+ LKQ++ DL+ FG+IPEFVGR P+
Sbjct: 267 ADV------KSKVVKDIG----------------GLLKQIQPEDLLKFGLIPEFVGRLPV 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++ L+ ILTEPKNA+++QY+ LF +D V++ F EAL+ IA A+E+KTGAR
Sbjct: 305 IVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEFEGEALKLIAEKAIERKTGAR 364
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR I+E L++D MY+VP DI V +T+DTV+ + P+ I
Sbjct: 365 GLRGIVEGLMMDIMYDVPSRDDIEKVIVTKDTVVNASLPTII 406
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 151 GEDVENILLKLIQAADYDIEKAEKGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALL 208
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 209 KILEGTVASVPPQGG---RKHPHQEFIQIDTTNILFIC 243
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 174 KGIIYIDEIDKVARKSENPSIT--RDVSGEGVQQALLKI 210
>sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus
denitrificans (strain Pd 1222) GN=clpX PE=3 SV=1
Length = 421
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 134/201 (66%), Gaps = 22/201 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+I++R +GFG
Sbjct: 209 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIAQRNKGTAMGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A AV E+D+K KQ+E DL+ FG+IPEFVGR P+
Sbjct: 269 A---------------------AVK-EDDDKGVGELFKQLEPEDLLKFGLIPEFVGRLPV 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+++ L+ ILT+PKNA+++QYQ LF ++ V LTF+ +AL AIA+ A+++KTGAR
Sbjct: 307 IATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPGSD 220
GLR+IME +LLD+M+++PG D
Sbjct: 367 GLRSIMEDILLDTMFDLPGMD 387
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 211 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 245
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKITRKSDNPSI--TRDVSGEGVQQALLKI 212
>sp|Q1MIM6|CLPX_RHIL3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=clpX PE=3 SV=1
Length = 425
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ASVKSQDDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+I+QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIARKAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+E+ V + P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISEEVVRGSARPLYI 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|A8HYF4|CLPX_AZOC5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=clpX PE=3 SV=1
Length = 422
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 145/237 (61%), Gaps = 28/237 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRR-KNEKYLGF 78
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R K +GF
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISSRSKGGTSIGF 269
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
GA RR L ++VE DL+ +G+IPEF+GR P
Sbjct: 270 GAKVAPVEERRPGEL----------------------FREVEPEDLLKYGLIPEFIGRLP 307
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L + L++ L +IL EPKNA+++QYQ LF M+ VDLT EAL AIAR A+E+KTGA
Sbjct: 308 VLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGA 367
Query: 199 RGLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGA 254
RGLR+IME +LLD+M+++PG + + V I+++ V +N P YI + D V GA
Sbjct: 368 RGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVVEQNARPLYI----YADRVGDAGA 420
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium
meliloti (strain 1021) GN=clpX PE=3 SV=1
Length = 425
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVRAPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V+K TA P YI
Sbjct: 371 GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYI 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|Q6NFU7|CLPX_CORDI ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=clpX PE=3 SV=1
Length = 430
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ ++P + + + +Q+DT+NILF+ +GA+ GL+++I R+ +K +GFG
Sbjct: 219 LLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGKKGIGFG 278
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A T A D D F + V DL+ FG+IPEF+GR PI
Sbjct: 279 AELTTKA---------------------DTDAVDVF-RDVLPEDLVKFGLIPEFIGRLPI 316
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ ++L+Q LV++LTEP+N++++QYQ LF MD+VDL F PEALQAIA LA+++ TGAR
Sbjct: 317 VATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGAR 376
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAIME LL+ MY++P D+ +V I E V P I
Sbjct: 377 GLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DEVDKI P I RDV GEGVQQ +L
Sbjct: 163 GEDVENILLKLLQAADFDVQRAQRGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALL 220
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++PN +I N +I
Sbjct: 221 KILEGTVASIPPQGG---RKHPNQDFIQLDTSNILFI 254
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGI+++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 186 RGIIYVDEVDKISRKSDNPSIT--RDVSGEGVQQALLKI 222
>sp|A5WC69|CLPX_PSYWF ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Psychrobacter sp. (strain PRwf-1) GN=clpX PE=3 SV=1
Length = 425
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 138/219 (63%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +P + E++QVDT+NIL + GA++GLD++I +R + +GF
Sbjct: 225 LLKLIEGTVAAIPPHGGRKHPNQELIQVDTSNILIIVGGAFSGLDKVIQQRTEKTGIGF- 283
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+A V +++D K+ KQVE DLI FG+IPE +GR P+
Sbjct: 284 --------------------NAEVKSKDDGKQLSELFKQVEPEDLIKFGLIPELIGRLPV 323
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L++ILTEPKNA+++QYQ LF M+ +L+F+ L+AIA A+E+KTGAR
Sbjct: 324 IATLEELDEEALMQILTEPKNAIVKQYQYLFEMEDAELSFTEAGLKAIAHKAMERKTGAR 383
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+E+ LLD+MYE+P SD V + ED + + AP
Sbjct: 384 GLRSIVENALLDTMYELPSMSDAKQVVVDEDVINEGAAP 422
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 34/178 (19%)
Query: 184 LQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITED--TVLKNT------ 235
L+ A+LA +KK G D+M E+ S+IL++ T T+L T
Sbjct: 100 LKVAAKLAEDKKQAKLGAD--------DAMVELSKSNILLIGPTGSGKTLLAQTLARMLD 151
Query: 236 APSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVS----ALAAFGIVFLDEVD 291
P + L E +G DV E + Q +L+ + A GI+++DE+D
Sbjct: 152 VPFAMADATTLTEAGYVG--------EDV--ENIVQKLLQAADYDVEKAEQGIIYVDEID 201
Query: 292 KIGAV-PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPN 348
KI + RDV GEGVQQ +LK+ + P+ G ++PN I N
Sbjct: 202 KISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGG---RKHPNQELIQVDTSN 256
>sp|A8ZXB8|CLPX_DESOH ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3)
GN=clpX PE=3 SV=1
Length = 417
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP K + + + V+VDTTNILF+ G + GLD+LI RR EK +GFG
Sbjct: 207 LLKIMEGTLASVPPKGGRKHPQQDFVKVDTTNILFICGGTFTGLDKLIERRVGEKTIGFG 266
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ V+ E+D K + L+ VE +DLI FG+IPEF+GR PI
Sbjct: 267 S---------------------KVTGEKD-KNYNQSLQLVEPQDLIRFGLIPEFLGRLPI 304
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V L++E LV+ILTEPKNA+I+Q+Q LF ++ V+L F+ AL +A LA+++K+GAR
Sbjct: 305 IVTLDELSEESLVKILTEPKNALIKQFQKLFEIEGVNLRFTDSALATVASLAMKRKSGAR 364
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+I+ES +LD MYE+P + + I E+ + K AP I
Sbjct: 365 GLRSILESCMLDLMYEIPSQEGVKECVIGEEVIKKKEAPMLI 406
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ L P G ++
Sbjct: 172 AQRGIVYVDEIDKIAQRSDNPSIT--RDVSGEGVQQALLKIMEGTLASVPPKGG---RKH 226
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 227 PQQDFVKVDTTNILFIC 243
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 174 RGIVYVDEIDKIAQRSDNPSIT--RDVSGEGVQQALLKI 210
>sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nocardioides
sp. (strain BAA-499 / JS614) GN=clpX PE=3 SV=1
Length = 426
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT +VP + + E +Q+DTTNILFV GA+ GL+ +I +R +K LGF
Sbjct: 216 LLKIIEGTTASVPPQGGRKHPHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKTLGFT 275
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A A R A L L QV DL FG+IPEF+GR P+
Sbjct: 276 AEVRGKAEREAEDL----------------------LAQVRPEDLTKFGLIPEFIGRLPL 313
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+QE LV+ILTEP+NA+++QYQ LF +D V+L F+P+A++AIA ALE+ TGAR
Sbjct: 314 IASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIADNALERGTGAR 373
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLRAI+E +LL MY+VP DI V +T + V+ +P+ I
Sbjct: 374 GLRAIIEEVLLHVMYDVPSRGDIAKVIVTREVVMDGVSPTLI 415
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GI+++DE+DK+ P I RDV GEGVQQ +L
Sbjct: 160 GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKAENPSI--TRDVSGEGVQQALL 217
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ P G ++P+ +I N ++
Sbjct: 218 KIIEGTTASVPPQGG---RKHPHQEFIQIDTTNILFV 251
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
GI+++DE+DK+ P I RDV GEGVQQ +LK+
Sbjct: 184 GIIYIDEIDKVARKAENPSI--TRDVSGEGVQQALLKI 219
>sp|B9JVD6|CLPX_AGRVS ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Agrobacterium vitis (strain S4 / ATCC BAA-846)
GN=clpX PE=3 SV=1
Length = 425
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLD++IS R + +GFG
Sbjct: 213 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + L+++E DL+ FG+IPEF+GR P+
Sbjct: 273 ATVVSPEDRRVGEV----------------------LRELEPEDLVKFGLIPEFIGRLPV 310
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L+++ L++IL+EPKNA+++QYQ LF M+ V+L+F +AL+ IAR A+ +KTGAR
Sbjct: 311 LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIARKAITRKTGAR 370
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTA-PSYI 240
GLR+IME +LLD+M+E+P + + + D V++ A P YI
Sbjct: 371 GLRSIMEKILLDTMFELPELEGVREVVISDEVVRGAARPLYI 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 157 GEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 214
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 215 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 249
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 180 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 216
>sp|B8EIL3|CLPX_METSB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=clpX PE=3 SV=1
Length = 421
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GL+++IS R +GFG
Sbjct: 210 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKGTSIGFG 269
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V A +D + + F ++VE DL+ FG+IPEFVGR P+
Sbjct: 270 A---------------------TVQAPDDRRTGEIF-RKVEPEDLLKFGLIPEFVGRLPV 307
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L +ILTEPKNA+++QYQ LF M+ +L+F EAL +A+ A+E++TGAR
Sbjct: 308 IATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAKKAIERRTGAR 367
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+++PG D + V I D V + P YI
Sbjct: 368 GLRSIMEGILLDTMFDLPGLDSVEQVVIGPDVVEGKSRPLYI 409
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ + + GIV++DE+DKI P I RDV GEGVQQ +L
Sbjct: 154 GEDVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALL 211
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 212 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 246
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 177 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKI 213
>sp|B2GGB7|CLPX_KOCRD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Kocuria
rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 /
DC2201) GN=clpX PE=3 SV=1
Length = 431
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 140/220 (63%), Gaps = 26/220 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGT+ +VP + + + E + +DTTN+LF+ +GA+ GL+ ++ +R +K +GFG
Sbjct: 220 LLKILEGTVASVPPQGGRKHPQQEFLHIDTTNVLFIVAGAFAGLEEIVQQRTGKKGIGFG 279
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
AP ++A D+A Q V+ DL+ FG+IPEF+GR P+
Sbjct: 280 APIRDTAD------VDIAGQ-------------------VQPEDLLKFGLIPEFIGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ +VRILTEP+NA+++QY+ LF +D V+LTF P+AL+AIA LALE+ TGAR
Sbjct: 315 VATLSKLSVADMVRILTEPRNALVKQYRKLFQLDGVELTFDPQALEAIAELALERGTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPS 238
GLRAI+E +L+ M+++PG D+ V +TED V K P
Sbjct: 375 GLRAILEDILMPVMFDLPGREDVAAVLVTEDAVAKLADPE 414
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A F GI+++DE+DKI P I RDV GEGVQQ +L
Sbjct: 164 GEDVENILLKLIQAADFDLKKAEQGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALL 221
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI 352
K+ + P G ++P ++ N +I
Sbjct: 222 KILEGTVASVPPQGG---RKHPQQEFLHIDTTNVLFI 255
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
+GI+++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 187 QGIIYIDEIDKISRKSENPSI--TRDVSGEGVQQALLKI 223
>sp|Q67SJ9|CLPX_SYMTH ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=clpX PE=3 SV=1
Length = 424
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL +LEGTI +VP + + E +Q++TTNILF+ GA++G+D++I+ R LGFG
Sbjct: 209 LLKILEGTIASVPPQGGRKHPHQEFIQINTTNILFICGGAFDGIDKIIANRVGRSGLGFG 268
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A D+ ++ E LKQ+ DL+ FG+IPEF+GR PI
Sbjct: 269 A--------------DIRSKQEQNVGE--------LLKQIMPEDLLKFGLIPEFIGRLPI 306
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+V +L+++ LVRIL EPKNA+++QYQ L +D ++L F EA++AIA+ AL + TGAR
Sbjct: 307 VVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGAR 366
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLRAI+E ++ D MYEVP +D+ IT+D VLK P
Sbjct: 367 GLRAIIEDIMTDVMYEVPSRTDVTKCVITKDVVLKKQEP 405
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 153 GEDVENILLKLIQAADYDIEKAERGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALL 210
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P+ +I N +I
Sbjct: 211 KILEGTIASVPPQGG---RKHPHQEFIQINTTNILFIC 245
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIG---AVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 176 RGIVYIDEVDKIARKSENPSIT--RDVSGEGVQQALLKI 212
>sp|A6VW21|CLPX_MARMS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Marinomonas
sp. (strain MWYL1) GN=clpX PE=3 SV=1
Length = 426
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 142/219 (64%), Gaps = 22/219 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT+NILF+ GA+ GL+R+IS R + +GF
Sbjct: 216 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLERVISDRTEKSSIGF- 274
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ + + +VE DL+ FG+IPEFVGR P+
Sbjct: 275 --------------------SATVKSKEEGRSFSEAVHRVETEDLVKFGLIPEFVGRLPV 314
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L++E L+ IL++PKNA+++QYQ LF ++ V+L F+PE+L+ A+LALE+KTGAR
Sbjct: 315 VATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPESLREAAKLALERKTGAR 374
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAP 237
GLR+I+ES LLD MYE+P +D++ V + ++ TAP
Sbjct: 375 GLRSILESALLDCMYELPTRNDVVKVVMDATSIRGETAP 413
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 181 AQRGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 235
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 236 PQQEFLQVDTSNILFIC 252
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 183 RGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 219
>sp|Q88KI9|CLPX_PSEPK ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain KT2440) GN=clpX PE=3 SV=1
Length = 442
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 228 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 287
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 288 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 326
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 327 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 386
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 387 GLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIEGTSQPLMI 428
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 193 AQMGIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 247
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 248 PQQEFLQVDTRNILFIC 264
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 196 GIVYIDEIDKISRKSDNPSIT--RDVSGEGVQQALLKL 231
>sp|A5W634|CLPX_PSEP1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=clpX PE=3 SV=1
Length = 427
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I R + +GFG
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFG 272
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 273 A---------------------EVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+A+AR ALE+KTGAR
Sbjct: 312 LATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVARKALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P D+ V I E + + P I
Sbjct: 372 GLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIEGTSQPLMI 413
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 216
>sp|A5VQN3|CLPX_BRUO2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Brucella
ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=clpX
PE=3 SV=1
Length = 427
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 23/222 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDTTNILF+ GA+ GLDR+IS R + +GFG
Sbjct: 212 LLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFG 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
A RR + K++E DL+ FG+IPEFVGR P+
Sbjct: 272 ATVKSVDERRIGEV----------------------FKELEPEDLLKFGLIPEFVGRLPV 309
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
+ L+ + LV+ILTEPKNA+++QYQ LF M+ V+L F +AL+AIA A+E+KTGAR
Sbjct: 310 IATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGAR 369
Query: 200 GLRAIMESLLLDSMYEVPGSD-ILMVHITEDTVLKNTAPSYI 240
GLR+IME +LLD+M+E+P + + V I+ D V + P YI
Sbjct: 370 GLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYI 411
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 266 GEGVQQGMLKVSALAAF-------GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGML 315
GE V+ +LK+ A + GIV++DEVDKI P I RDV GEGVQQ +L
Sbjct: 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALL 213
Query: 316 KVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIW 353
K+ + P G ++P ++ N +I
Sbjct: 214 KIMEGTVASVPPQGG---RKHPQQEFLQVDTTNILFIC 248
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
RGIV++DEVDKI P I RDV GEGVQQ +LK+
Sbjct: 179 RGIVYIDEVDKISRKSDNPSI--TRDVSGEGVQQALLKI 215
>sp|C3JYJ9|CLPX_PSEFS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
fluorescens (strain SBW25) GN=clpX PE=3 SV=1
Length = 427
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 22/222 (9%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EGT+ +VP + + + E +QVDT NILF+ GA++GL+++I +R +GF
Sbjct: 213 LLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGF- 271
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
SA V ++E+ K+ L++VE DL+ FG+IPEFVGR P+
Sbjct: 272 --------------------SAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPV 311
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L L++ L++ILTEPKNA+ +QY LF M+ VDL F +AL+++A+ ALE+KTGAR
Sbjct: 312 LATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGAR 371
Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYI 240
GLR+I+E +LLD+MYE+P S++ V I E + + P YI
Sbjct: 372 GLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSKPLYI 413
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 280 AAFGIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRY 336
A GIV++DE+DKI P I RDV GEGVQQ +LK+ + P G ++
Sbjct: 178 AQMGIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKLIEGTVASVPPQGG---RKH 232
Query: 337 PNTGYIWYRYPNTGYIW 353
P ++ N +I
Sbjct: 233 PQQEFLQVDTRNILFIC 249
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 242 GIVFLDEVDKIGAV---PGIHQLRDVGGEGVQQGMLKV 276
GIV++DE+DKI P I RDV GEGVQQ +LK+
Sbjct: 181 GIVYIDEIDKISRKSDNPSI--TRDVSGEGVQQALLKL 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,004,963
Number of Sequences: 539616
Number of extensions: 7306598
Number of successful extensions: 22754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 16833
Number of HSP's gapped (non-prelim): 3798
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)