Query psy11091
Match_columns 408
No_of_seqs 420 out of 2445
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:43:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1219 ClpX ATP-dependent pro 100.0 3.7E-69 8.1E-74 531.3 18.3 217 4-242 180-398 (408)
2 KOG0745|consensus 100.0 1.4E-64 3E-69 513.3 19.0 235 5-248 310-544 (564)
3 TIGR00382 clpX endopeptidase C 100.0 7.8E-52 1.7E-56 423.1 16.4 212 5-239 200-412 (413)
4 PRK05342 clpX ATP-dependent pr 100.0 2.6E-51 5.6E-56 419.1 16.8 216 5-241 192-408 (412)
5 TIGR00390 hslU ATP-dependent p 100.0 1.4E-44 2.9E-49 369.9 11.7 161 5-237 264-429 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 2.3E-44 4.9E-49 368.4 12.1 161 7-239 268-433 (443)
7 COG1220 HslU ATP-dependent pro 100.0 1.7E-33 3.6E-38 280.6 11.4 155 8-234 270-429 (444)
8 COG1219 ClpX ATP-dependent pro 99.9 4.6E-24 9.9E-29 212.0 3.7 95 245-343 120-222 (408)
9 KOG0745|consensus 99.8 6E-22 1.3E-26 202.9 3.8 108 222-330 220-341 (564)
10 CHL00095 clpC Clp protease ATP 99.8 1.7E-20 3.6E-25 206.4 14.3 173 14-228 625-801 (821)
11 COG0542 clpA ATP-binding subun 99.8 1.1E-20 2.4E-25 205.4 11.9 163 15-229 608-775 (786)
12 PRK11034 clpA ATP-dependent Cl 99.8 3.4E-20 7.4E-25 202.6 12.9 162 14-229 571-736 (758)
13 TIGR02639 ClpA ATP-dependent C 99.7 6.8E-18 1.5E-22 183.7 12.5 160 14-227 567-730 (731)
14 COG1220 HslU ATP-dependent pro 99.7 5.8E-18 1.3E-22 169.9 3.7 71 264-344 235-305 (444)
15 PRK05201 hslU ATP-dependent pr 99.6 3.7E-16 7.9E-21 161.3 5.4 57 266-325 236-292 (443)
16 TIGR00390 hslU ATP-dependent p 99.6 3.8E-16 8.1E-21 161.2 5.3 59 264-325 232-290 (441)
17 TIGR03345 VI_ClpV1 type VI sec 99.6 4.2E-15 9.1E-20 164.7 13.1 152 14-216 682-834 (852)
18 PRK10865 protein disaggregatio 99.6 3.1E-15 6.7E-20 165.8 11.2 162 13-228 683-848 (857)
19 TIGR03346 chaperone_ClpB ATP-d 99.6 9.5E-15 2.1E-19 161.8 12.8 161 14-228 681-845 (852)
20 PF07724 AAA_2: AAA domain (Cd 99.6 8E-16 1.7E-20 140.7 3.2 88 5-140 84-171 (171)
21 PF10431 ClpB_D2-small: C-term 99.4 2.7E-13 5.9E-18 109.0 7.2 77 146-226 1-81 (81)
22 KOG1051|consensus 99.3 1.7E-12 3.6E-17 143.8 7.8 160 15-217 675-838 (898)
23 PRK05342 clpX ATP-dependent pr 99.1 2.6E-11 5.7E-16 125.1 3.7 76 256-332 142-225 (412)
24 PRK10787 DNA-binding ATP-depen 99.1 3.6E-10 7.7E-15 124.9 11.1 99 129-232 477-576 (784)
25 TIGR00382 clpX endopeptidase C 99.0 8.6E-11 1.9E-15 121.5 3.4 91 255-349 149-247 (413)
26 PF07724 AAA_2: AAA domain (Cd 98.7 1.5E-09 3.2E-14 99.5 -2.6 57 266-324 46-109 (171)
27 TIGR00763 lon ATP-dependent pr 98.6 1.6E-07 3.5E-12 103.8 9.2 99 129-232 476-580 (775)
28 CHL00181 cbbX CbbX; Provisiona 97.8 4.2E-05 9.2E-10 75.6 7.3 79 129-216 179-258 (287)
29 TIGR02880 cbbX_cfxQ probable R 97.2 0.0016 3.4E-08 64.3 8.5 75 129-216 178-257 (284)
30 COG0466 Lon ATP-dependent Lon 96.3 0.0084 1.8E-07 66.4 6.7 97 131-232 481-578 (782)
31 TIGR02881 spore_V_K stage V sp 95.6 0.07 1.5E-06 51.5 9.0 75 129-216 161-242 (261)
32 COG1222 RPT1 ATP-dependent 26S 92.6 0.055 1.2E-06 56.2 1.5 46 272-319 232-280 (406)
33 TIGR00368 Mg chelatase-related 92.5 0.88 1.9E-05 48.9 10.3 89 129-219 374-484 (499)
34 TIGR01817 nifA Nif-specific re 92.2 0.48 1E-05 50.6 7.9 74 128-210 350-426 (534)
35 TIGR02902 spore_lonB ATP-depen 90.7 0.87 1.9E-05 49.1 8.1 64 129-210 247-310 (531)
36 KOG0726|consensus 89.8 0.14 3E-06 52.4 1.1 75 252-336 239-324 (440)
37 KOG0738|consensus 89.4 0.27 5.9E-06 51.8 2.9 60 271-333 294-363 (491)
38 CHL00181 cbbX CbbX; Provisiona 88.9 0.21 4.5E-06 49.7 1.6 44 273-320 114-157 (287)
39 PF00004 AAA: ATPase family as 88.1 0.22 4.7E-06 41.4 1.0 54 266-321 39-96 (132)
40 TIGR02881 spore_V_K stage V sp 88.0 0.22 4.9E-06 48.0 1.2 47 270-321 94-140 (261)
41 PRK07764 DNA polymerase III su 87.8 1.1 2.5E-05 50.9 6.7 63 130-209 164-226 (824)
42 TIGR02880 cbbX_cfxQ probable R 87.1 0.28 6E-06 48.5 1.2 45 272-320 112-156 (284)
43 TIGR02974 phageshock_pspF psp 86.7 1.8 3.9E-05 43.8 6.8 76 129-211 154-232 (329)
44 PRK13341 recombination factor 86.4 0.65 1.4E-05 52.1 3.8 137 129-280 152-302 (725)
45 PF00158 Sigma54_activat: Sigm 86.4 0.27 5.8E-06 45.2 0.6 35 276-323 88-122 (168)
46 TIGR01818 ntrC nitrogen regula 86.4 3.7 8.1E-05 42.3 9.0 75 129-211 289-366 (463)
47 PF05496 RuvB_N: Holliday junc 86.2 1.8 4E-05 42.5 6.3 51 129-192 162-212 (233)
48 PRK00080 ruvB Holliday junctio 86.1 2.9 6.3E-05 41.7 7.8 64 129-208 163-226 (328)
49 KOG0727|consensus 85.9 0.27 5.8E-06 49.6 0.4 56 261-319 218-284 (408)
50 PRK11388 DNA-binding transcrip 84.7 3.7 8E-05 44.8 8.5 73 129-210 477-552 (638)
51 KOG0728|consensus 84.0 0.59 1.3E-05 47.2 1.8 37 281-319 240-276 (404)
52 PRK14700 recombination factor 83.7 1.1 2.5E-05 45.4 3.7 133 128-280 22-170 (300)
53 PRK07003 DNA polymerase III su 83.3 1.7 3.8E-05 49.3 5.3 64 129-209 162-225 (830)
54 PRK09862 putative ATP-dependen 83.1 4 8.6E-05 44.2 7.7 88 129-218 371-476 (506)
55 TIGR00764 lon_rel lon-related 82.3 2.3 5.1E-05 46.8 5.8 56 129-192 283-344 (608)
56 PF07728 AAA_5: AAA domain (dy 82.2 0.58 1.2E-05 40.2 0.9 38 281-331 65-102 (139)
57 PRK10923 glnG nitrogen regulat 81.6 5.8 0.00013 41.1 8.1 74 129-211 293-370 (469)
58 PRK11608 pspF phage shock prot 81.4 6.6 0.00014 39.6 8.2 76 129-211 161-239 (326)
59 PF00493 MCM: MCM2/3/5 family 81.3 0.47 1E-05 48.0 -0.0 39 277-328 117-155 (331)
60 PRK05022 anaerobic nitric oxid 80.6 8.5 0.00019 41.1 9.1 76 129-212 342-420 (509)
61 KOG0740|consensus 80.2 1.2 2.6E-05 47.3 2.5 62 262-326 225-294 (428)
62 COG0464 SpoVK ATPases of the A 79.2 1 2.2E-05 47.4 1.7 68 268-337 319-393 (494)
63 KOG0733|consensus 79.1 1.3 2.7E-05 49.4 2.3 52 259-312 258-312 (802)
64 TIGR02442 Cob-chelat-sub cobal 79.0 6.9 0.00015 43.2 8.0 31 176-206 247-278 (633)
65 KOG0739|consensus 78.4 1.8 4E-05 44.7 3.1 29 270-298 211-242 (439)
66 PLN00020 ribulose bisphosphate 78.1 1.1 2.3E-05 47.3 1.3 56 262-320 187-250 (413)
67 TIGR02031 BchD-ChlD magnesium 77.8 6.9 0.00015 42.9 7.5 24 13-36 97-120 (589)
68 PRK07133 DNA polymerase III su 77.7 6 0.00013 44.7 7.1 64 129-209 161-224 (725)
69 PRK08084 DNA replication initi 77.5 2.9 6.3E-05 40.0 4.1 65 129-209 148-214 (235)
70 PF00308 Bac_DnaA: Bacterial d 77.3 2.2 4.8E-05 40.5 3.2 73 119-209 139-213 (219)
71 PRK13342 recombination factor 76.9 4.6 0.0001 41.8 5.6 70 127-210 133-202 (413)
72 KOG2004|consensus 76.7 4.2 9.2E-05 46.1 5.5 36 18-59 527-562 (906)
73 PRK15115 response regulator Gl 76.7 8.1 0.00018 39.7 7.3 74 129-210 289-365 (444)
74 PRK03992 proteasome-activating 76.5 1.4 3.1E-05 45.5 1.7 46 271-318 211-259 (389)
75 smart00350 MCM minichromosome 76.3 0.72 1.6E-05 49.3 -0.4 38 277-327 296-333 (509)
76 PRK11034 clpA ATP-dependent Cl 76.3 0.99 2.2E-05 50.9 0.6 53 129-191 333-385 (758)
77 KOG0741|consensus 76.3 0.84 1.8E-05 50.0 0.0 64 233-312 281-356 (744)
78 PRK14949 DNA polymerase III su 76.0 6.5 0.00014 45.6 6.9 62 131-209 164-225 (944)
79 PRK10820 DNA-binding transcrip 75.9 11 0.00023 40.6 8.2 75 129-211 359-436 (520)
80 PRK14952 DNA polymerase III su 75.4 6.5 0.00014 43.3 6.5 65 129-210 161-225 (584)
81 KOG0652|consensus 74.1 1.4 3E-05 44.9 0.9 36 281-319 264-300 (424)
82 PRK09087 hypothetical protein; 73.8 4 8.7E-05 39.1 4.0 51 129-192 134-186 (226)
83 PRK14956 DNA polymerase III su 73.7 10 0.00022 41.0 7.4 64 129-209 164-227 (484)
84 TIGR00635 ruvB Holliday juncti 73.7 6.1 0.00013 38.5 5.3 63 129-207 142-204 (305)
85 TIGR01241 FtsH_fam ATP-depende 72.6 1.8 4E-05 45.8 1.5 49 272-320 135-187 (495)
86 TIGR02640 gas_vesic_GvpN gas v 72.6 1.8 3.9E-05 42.1 1.3 36 280-328 104-139 (262)
87 PRK12323 DNA polymerase III su 72.5 3.7 8E-05 46.1 3.8 62 130-208 168-229 (700)
88 TIGR02030 BchI-ChlI magnesium 72.1 9.4 0.0002 39.1 6.4 22 14-35 145-166 (337)
89 TIGR02902 spore_lonB ATP-depen 71.5 1.6 3.4E-05 47.2 0.6 36 276-324 170-205 (531)
90 smart00350 MCM minichromosome 71.4 11 0.00025 40.3 7.1 22 14-35 314-335 (509)
91 TIGR02442 Cob-chelat-sub cobal 71.2 1.1 2.4E-05 49.3 -0.6 47 262-321 99-153 (633)
92 TIGR02915 PEP_resp_reg putativ 71.2 24 0.00053 36.2 9.2 74 129-210 294-370 (445)
93 CHL00195 ycf46 Ycf46; Provisio 70.9 2.7 5.8E-05 45.2 2.2 27 270-296 304-333 (489)
94 PRK13406 bchD magnesium chelat 70.7 13 0.00028 41.0 7.4 72 129-206 152-224 (584)
95 PTZ00111 DNA replication licen 69.4 1.2 2.7E-05 51.1 -0.7 41 276-329 552-592 (915)
96 PRK08903 DnaA regulatory inact 69.1 6.3 0.00014 36.8 4.1 68 127-210 136-205 (227)
97 TIGR00368 Mg chelatase-related 68.9 1.6 3.4E-05 47.0 0.0 39 276-327 290-328 (499)
98 PRK09862 putative ATP-dependen 68.8 1.8 4E-05 46.7 0.5 56 259-329 274-329 (506)
99 PRK05642 DNA replication initi 68.5 7.4 0.00016 37.3 4.5 66 129-210 147-214 (234)
100 TIGR01243 CDC48 AAA family ATP 68.5 3.3 7.2E-05 46.1 2.4 21 135-155 335-355 (733)
101 PRK11361 acetoacetate metaboli 68.2 24 0.00053 36.2 8.5 74 129-211 298-375 (457)
102 KOG0482|consensus 67.3 1.9 4.1E-05 47.2 0.2 53 245-297 391-455 (721)
103 PRK15429 formate hydrogenlyase 66.8 26 0.00057 38.8 8.9 74 129-211 531-608 (686)
104 PRK05896 DNA polymerase III su 66.3 24 0.00052 39.3 8.3 63 129-208 162-224 (605)
105 PRK08727 hypothetical protein; 66.2 6.3 0.00014 37.7 3.5 66 129-210 143-210 (233)
106 KOG0479|consensus 66.1 2.6 5.6E-05 46.8 0.9 17 280-296 397-413 (818)
107 PRK13407 bchI magnesium chelat 65.8 4.7 0.0001 41.3 2.7 54 257-323 96-157 (334)
108 CHL00081 chlI Mg-protoporyphyr 65.3 29 0.00062 36.0 8.3 26 176-201 265-291 (350)
109 TIGR02030 BchI-ChlI magnesium 64.4 2 4.3E-05 44.0 -0.3 48 260-320 102-157 (337)
110 TIGR02329 propionate_PrpR prop 64.3 22 0.00048 38.7 7.5 74 129-211 368-449 (526)
111 TIGR03689 pup_AAA proteasome A 63.3 3.5 7.5E-05 44.7 1.2 18 281-298 289-306 (512)
112 TIGR01242 26Sp45 26S proteasom 63.1 3.6 7.8E-05 41.7 1.3 42 275-318 209-250 (364)
113 KOG0481|consensus 62.5 3.4 7.4E-05 45.3 1.0 31 180-210 318-348 (729)
114 CHL00081 chlI Mg-protoporyphyr 62.2 2.2 4.7E-05 44.1 -0.5 54 258-324 113-174 (350)
115 PF06068 TIP49: TIP49 C-termin 61.5 5.9 0.00013 41.7 2.5 54 126-193 329-382 (398)
116 PTZ00361 26 proteosome regulat 61.5 3.1 6.7E-05 44.2 0.5 44 272-318 264-311 (438)
117 PTZ00454 26S protease regulato 61.3 4.4 9.6E-05 42.3 1.6 25 273-297 227-254 (398)
118 TIGR03420 DnaA_homol_Hda DnaA 61.1 14 0.00031 34.0 4.8 63 131-209 142-206 (226)
119 PRK14087 dnaA chromosomal repl 60.6 9.3 0.0002 40.5 3.8 71 129-213 256-328 (450)
120 PRK06647 DNA polymerase III su 60.0 41 0.00089 36.9 8.7 62 131-209 164-225 (563)
121 PRK10365 transcriptional regul 58.9 47 0.001 33.9 8.5 74 129-210 294-370 (441)
122 COG1223 Predicted ATPase (AAA+ 58.1 6.6 0.00014 40.1 2.1 44 261-306 189-236 (368)
123 PRK04132 replication factor C 57.7 6.4 0.00014 45.2 2.2 55 136-190 419-473 (846)
124 KOG0730|consensus 57.4 5.4 0.00012 44.6 1.5 35 262-298 507-544 (693)
125 PHA02544 44 clamp loader, smal 56.9 24 0.00051 34.6 5.7 58 128-192 143-200 (316)
126 PRK06620 hypothetical protein; 56.3 12 0.00027 35.5 3.5 62 131-208 130-193 (214)
127 PRK14962 DNA polymerase III su 56.1 19 0.00042 38.5 5.3 64 129-209 160-223 (472)
128 PRK13765 ATP-dependent proteas 55.7 26 0.00057 39.1 6.4 46 13-61 239-287 (637)
129 PF05496 RuvB_N: Holliday junc 55.2 5.7 0.00012 39.1 1.1 47 268-330 91-137 (233)
130 KOG0478|consensus 55.0 1.7 3.7E-05 48.7 -2.8 44 277-333 522-565 (804)
131 smart00382 AAA ATPases associa 55.0 15 0.00032 29.3 3.4 26 272-297 69-94 (148)
132 PRK10733 hflB ATP-dependent me 54.0 5.4 0.00012 44.1 0.8 18 281-298 244-261 (644)
133 PRK12422 chromosomal replicati 53.9 15 0.00033 39.0 4.1 66 128-209 251-318 (445)
134 PRK13342 recombination factor 53.7 7.3 0.00016 40.4 1.7 30 281-323 92-121 (413)
135 TIGR02640 gas_vesic_GvpN gas v 53.5 73 0.0016 31.0 8.4 23 12-34 117-139 (262)
136 KOG0480|consensus 53.4 3 6.5E-05 46.5 -1.2 19 278-296 439-457 (764)
137 KOG0729|consensus 52.9 9 0.0002 39.3 2.1 45 271-319 257-306 (435)
138 PRK00411 cdc6 cell division co 52.8 23 0.0005 35.7 5.1 71 131-212 191-262 (394)
139 TIGR01243 CDC48 AAA family ATP 52.4 7.4 0.00016 43.5 1.5 49 270-320 257-308 (733)
140 PRK15424 propionate catabolism 52.3 4.9 0.00011 43.8 0.2 35 276-323 317-351 (538)
141 CHL00176 ftsH cell division pr 52.0 7.6 0.00017 43.2 1.6 26 272-297 263-291 (638)
142 PRK10787 DNA-binding ATP-depen 52.0 13 0.00029 42.2 3.5 30 281-319 416-445 (784)
143 COG0714 MoxR-like ATPases [Gen 51.4 7.3 0.00016 39.0 1.2 35 283-330 114-148 (329)
144 PRK14956 DNA polymerase III su 51.1 7 0.00015 42.2 1.1 41 267-320 104-147 (484)
145 TIGR02928 orc1/cdc6 family rep 51.0 27 0.00059 34.7 5.2 69 133-212 185-254 (365)
146 KOG0734|consensus 50.7 12 0.00026 41.5 2.7 26 273-298 385-413 (752)
147 PRK10865 protein disaggregatio 50.5 9.3 0.0002 43.8 2.0 62 268-334 254-319 (857)
148 TIGR00362 DnaA chromosomal rep 50.0 30 0.00065 35.6 5.5 68 129-212 249-318 (405)
149 PRK12402 replication factor C 50.0 39 0.00085 33.0 6.0 49 129-191 168-216 (337)
150 PRK06893 DNA replication initi 49.3 13 0.00029 35.3 2.5 64 130-209 143-208 (229)
151 PRK13407 bchI magnesium chelat 49.1 49 0.0011 34.0 6.8 40 13-52 141-180 (334)
152 TIGR02903 spore_lon_C ATP-depe 48.9 6.5 0.00014 43.3 0.4 40 274-326 258-297 (615)
153 TIGR03346 chaperone_ClpB ATP-d 48.3 9 0.0002 43.8 1.4 62 268-334 249-314 (852)
154 PRK15424 propionate catabolism 48.2 1.1E+02 0.0023 33.6 9.5 73 129-210 383-463 (538)
155 COG1222 RPT1 ATP-dependent 26S 48.1 11 0.00023 39.8 1.8 34 243-279 247-281 (406)
156 TIGR02329 propionate_PrpR prop 47.7 5.8 0.00013 43.0 -0.2 34 276-322 302-335 (526)
157 PF01078 Mg_chelatase: Magnesi 47.5 9.3 0.0002 36.9 1.2 37 276-325 101-137 (206)
158 KOG1942|consensus 46.8 22 0.00048 37.0 3.8 62 126-206 348-409 (456)
159 COG0465 HflB ATP-dependent Zn 46.4 16 0.00035 40.5 3.0 26 273-298 231-259 (596)
160 COG1239 ChlI Mg-chelatase subu 46.2 14 0.00031 39.3 2.4 33 262-294 117-157 (423)
161 TIGR02915 PEP_resp_reg putativ 46.0 5.3 0.00012 41.1 -0.8 33 276-321 228-260 (445)
162 PRK14961 DNA polymerase III su 46.0 29 0.00063 35.4 4.6 64 129-209 162-225 (363)
163 COG1223 Predicted ATPase (AAA+ 46.0 13 0.00028 38.1 1.9 44 243-287 213-258 (368)
164 PLN03025 replication factor C 45.9 26 0.00056 34.9 4.1 50 129-192 142-191 (319)
165 PRK11388 DNA-binding transcrip 45.9 5.4 0.00012 43.5 -0.7 34 276-322 411-444 (638)
166 PRK00103 rRNA large subunit me 45.2 21 0.00045 32.9 3.1 20 50-70 98-117 (157)
167 PRK12323 DNA polymerase III su 44.5 8.4 0.00018 43.4 0.4 42 266-320 106-150 (700)
168 TIGR02974 phageshock_pspF psp 44.0 9.9 0.00021 38.5 0.8 20 276-295 88-107 (329)
169 CHL00095 clpC Clp protease ATP 43.9 18 0.00038 41.2 2.9 62 268-334 255-319 (821)
170 PRK00149 dnaA chromosomal repl 43.4 28 0.0006 36.5 4.1 66 129-210 261-328 (450)
171 TIGR00763 lon ATP-dependent pr 43.3 16 0.00034 41.4 2.3 31 281-320 414-444 (775)
172 TIGR02031 BchD-ChlD magnesium 42.2 5.3 0.00012 43.8 -1.5 37 276-325 79-115 (589)
173 PRK13406 bchD magnesium chelat 42.2 38 0.00082 37.4 5.0 40 254-293 58-105 (584)
174 COG1221 PspF Transcriptional r 42.2 70 0.0015 34.0 6.7 73 136-215 239-312 (403)
175 PF10923 DUF2791: P-loop Domai 42.1 72 0.0016 34.0 6.8 82 130-218 317-402 (416)
176 TIGR02397 dnaX_nterm DNA polym 41.6 37 0.00081 33.6 4.5 64 130-210 161-224 (355)
177 PTZ00112 origin recognition co 40.2 40 0.00087 39.8 4.9 68 130-210 919-987 (1164)
178 TIGR02903 spore_lon_C ATP-depe 40.1 29 0.00063 38.4 3.7 51 128-192 336-386 (615)
179 COG1241 MCM2 Predicted ATPase 39.3 14 0.00031 41.6 1.2 26 180-205 273-298 (682)
180 PF14532 Sigma54_activ_2: Sigm 38.5 22 0.00049 30.7 2.1 22 274-295 62-83 (138)
181 COG1224 TIP49 DNA helicase TIP 38.5 32 0.0007 36.5 3.5 61 127-206 343-403 (450)
182 KOG0736|consensus 37.4 32 0.0007 39.6 3.6 28 128-155 545-572 (953)
183 KOG0727|consensus 37.2 16 0.00036 37.2 1.2 35 243-279 251-285 (408)
184 PF01637 Arch_ATPase: Archaeal 37.2 34 0.00074 30.7 3.2 29 266-294 103-131 (234)
185 TIGR03015 pepcterm_ATPase puta 36.6 33 0.00072 32.4 3.1 69 133-213 179-247 (269)
186 PRK07994 DNA polymerase III su 36.3 12 0.00027 41.7 0.1 40 267-319 102-144 (647)
187 PF09003 Phage_integ_N: Bacter 36.3 15 0.00032 30.3 0.6 13 338-350 25-37 (75)
188 PRK14963 DNA polymerase III su 35.7 65 0.0014 34.9 5.5 65 129-210 159-223 (504)
189 smart00763 AAA_PrkA PrkA AAA d 35.7 14 0.0003 38.6 0.4 42 276-330 231-272 (361)
190 PF13401 AAA_22: AAA domain; P 35.7 26 0.00057 29.1 2.0 29 266-294 72-100 (131)
191 PF00004 AAA: ATPase family as 35.4 19 0.00041 29.6 1.1 44 242-287 60-106 (132)
192 PF01990 ATP-synt_F: ATP synth 35.4 38 0.00083 28.0 2.9 25 265-289 26-50 (95)
193 COG0470 HolB ATPase involved i 35.4 12 0.00026 36.1 -0.1 46 264-322 89-137 (325)
194 PRK09112 DNA polymerase III su 35.3 13 0.00027 38.3 0.0 45 263-320 120-167 (351)
195 TIGR03345 VI_ClpV1 type VI sec 35.2 37 0.0008 39.1 3.7 53 129-191 334-386 (852)
196 TIGR02639 ClpA ATP-dependent C 35.1 38 0.00083 38.0 3.7 52 130-191 330-381 (731)
197 PRK14949 DNA polymerase III su 34.9 17 0.00036 42.4 0.9 41 267-320 102-145 (944)
198 PRK14970 DNA polymerase III su 34.8 71 0.0015 32.3 5.3 65 128-209 150-214 (367)
199 PLN03025 replication factor C 34.7 17 0.00036 36.3 0.8 26 281-319 99-124 (319)
200 PRK14086 dnaA chromosomal repl 34.5 50 0.0011 36.9 4.4 66 129-210 427-494 (617)
201 PF02120 Flg_hook: Flagellar h 34.4 26 0.00056 27.8 1.7 49 126-178 16-72 (85)
202 PRK10365 transcriptional regul 34.2 15 0.00033 37.5 0.4 20 276-295 228-247 (441)
203 PF07202 Tcp10_C: T-complex pr 33.9 1.5E+02 0.0033 28.0 7.0 36 350-387 46-81 (179)
204 PRK11361 acetoacetate metaboli 33.8 14 0.00031 37.9 0.2 20 276-295 232-251 (457)
205 PF01637 Arch_ATPase: Archaeal 33.6 54 0.0012 29.5 3.8 49 129-190 175-223 (234)
206 COG2256 MGS1 ATPase related to 33.4 33 0.00072 36.7 2.7 32 281-325 104-135 (436)
207 TIGR01650 PD_CobS cobaltochela 33.4 23 0.00051 36.4 1.6 34 281-327 134-168 (327)
208 KOG0735|consensus 33.3 39 0.00085 38.8 3.3 63 136-213 563-625 (952)
209 TIGR02928 orc1/cdc6 family rep 33.1 34 0.00074 34.0 2.7 28 267-294 114-142 (365)
210 COG0465 HflB ATP-dependent Zn 33.0 45 0.00097 37.1 3.7 90 193-288 191-293 (596)
211 KOG0651|consensus 32.7 17 0.00037 37.9 0.5 54 262-319 205-261 (388)
212 TIGR01650 PD_CobS cobaltochela 32.5 1.3E+02 0.0028 31.1 6.7 41 12-52 146-187 (327)
213 KOG0652|consensus 32.2 18 0.0004 37.0 0.6 134 129-279 149-301 (424)
214 PRK13530 arsenate reductase; P 32.0 23 0.00049 31.3 1.1 14 47-60 1-14 (133)
215 COG0714 MoxR-like ATPases [Gen 31.8 50 0.0011 33.0 3.6 38 13-51 125-162 (329)
216 COG2256 MGS1 ATPase related to 31.8 48 0.001 35.5 3.5 72 113-191 122-202 (436)
217 PF13304 AAA_21: AAA domain; P 31.2 49 0.0011 28.9 3.1 27 266-292 238-268 (303)
218 PRK06645 DNA polymerase III su 30.5 68 0.0015 34.9 4.6 65 129-210 171-235 (507)
219 PRK14960 DNA polymerase III su 30.4 56 0.0012 37.1 4.0 64 129-209 161-224 (702)
220 PRK08691 DNA polymerase III su 30.4 48 0.001 37.6 3.5 65 129-210 162-226 (709)
221 PRK10820 DNA-binding transcrip 30.2 26 0.00056 37.8 1.3 20 276-295 293-312 (520)
222 PRK05563 DNA polymerase III su 30.1 76 0.0017 34.7 4.9 65 129-210 162-226 (559)
223 COG3829 RocR Transcriptional r 30.1 17 0.00037 39.9 0.0 18 276-293 335-352 (560)
224 PRK14958 DNA polymerase III su 29.8 18 0.0004 39.0 0.2 27 281-320 119-145 (509)
225 TIGR01817 nifA Nif-specific re 29.8 21 0.00046 38.2 0.7 20 276-295 285-304 (534)
226 PRK00440 rfc replication facto 29.5 88 0.0019 30.2 4.8 49 129-191 145-193 (319)
227 PRK07940 DNA polymerase III su 28.4 20 0.00044 37.5 0.2 42 266-320 99-143 (394)
228 PRK14957 DNA polymerase III su 28.3 74 0.0016 35.0 4.4 64 129-209 162-225 (546)
229 COG2440 FixX Ferredoxin-like p 27.9 47 0.001 28.9 2.2 20 337-356 78-98 (99)
230 COG0788 PurU Formyltetrahydrof 27.5 1.6E+02 0.0034 30.1 6.1 100 162-280 154-270 (287)
231 PRK15115 response regulator Gl 27.3 21 0.00046 36.7 0.1 20 276-295 223-242 (444)
232 PRK05022 anaerobic nitric oxid 27.1 29 0.00063 37.2 1.1 20 276-295 276-295 (509)
233 KOG0257|consensus 26.9 2.3E+02 0.005 30.5 7.5 30 162-192 193-222 (420)
234 COG2440 FixX Ferredoxin-like p 26.7 48 0.001 28.8 2.1 7 315-321 41-47 (99)
235 PRK14951 DNA polymerase III su 26.4 29 0.00063 38.6 1.0 40 267-319 107-149 (618)
236 COG0394 Wzb Protein-tyrosine-p 26.3 34 0.00073 30.7 1.2 31 125-155 65-95 (139)
237 KOG0734|consensus 26.3 35 0.00075 38.1 1.5 100 194-298 346-460 (752)
238 PRK04195 replication factor C 26.1 1.1E+02 0.0024 32.5 5.1 60 129-208 143-203 (482)
239 cd00009 AAA The AAA+ (ATPases 25.8 53 0.0011 26.5 2.2 18 276-293 79-96 (151)
240 COG0466 Lon ATP-dependent Lon 25.7 51 0.0011 37.6 2.6 36 260-296 396-432 (782)
241 PRK00080 ruvB Holliday junctio 25.5 49 0.0011 33.0 2.3 15 281-295 102-116 (328)
242 PF07726 AAA_3: ATPase family 25.4 28 0.00061 31.5 0.5 36 15-52 77-112 (131)
243 PRK07764 DNA polymerase III su 25.3 42 0.00091 38.6 2.0 42 241-295 121-165 (824)
244 PRK08769 DNA polymerase III su 25.3 22 0.00048 36.2 -0.2 45 263-320 92-139 (319)
245 PRK14088 dnaA chromosomal repl 25.1 75 0.0016 33.6 3.7 66 129-210 244-311 (440)
246 PF02590 SPOUT_MTase: Predicte 25.0 57 0.0012 30.0 2.4 23 49-72 97-119 (155)
247 PRK10923 glnG nitrogen regulat 24.8 20 0.00043 37.2 -0.6 19 276-294 227-245 (469)
248 PRK14959 DNA polymerase III su 24.6 93 0.002 34.9 4.4 62 130-208 163-224 (624)
249 PRK14964 DNA polymerase III su 24.4 1.3E+02 0.0028 32.8 5.3 65 129-210 159-223 (491)
250 KOG0731|consensus 24.3 37 0.0008 38.9 1.3 18 281-298 403-420 (774)
251 COG1221 PspF Transcriptional r 24.1 28 0.0006 36.9 0.3 18 276-293 168-185 (403)
252 PRK14953 DNA polymerase III su 24.1 1.3E+02 0.0028 32.5 5.2 62 131-209 164-225 (486)
253 PRK14958 DNA polymerase III su 23.9 93 0.002 33.7 4.2 64 129-209 162-225 (509)
254 COG2204 AtoC Response regulato 23.8 32 0.0007 37.1 0.7 19 276-294 230-248 (464)
255 PRK11608 pspF phage shock prot 23.7 34 0.00074 34.5 0.8 20 276-295 95-114 (326)
256 PRK06305 DNA polymerase III su 23.4 35 0.00076 36.2 0.9 42 266-320 103-147 (451)
257 KOG2227|consensus 23.3 1.6E+02 0.0036 32.3 5.7 61 138-210 317-377 (529)
258 PRK13341 recombination factor 23.2 42 0.00091 38.1 1.4 30 281-323 109-138 (725)
259 PF09003 Phage_integ_N: Bacter 23.2 43 0.00093 27.7 1.1 12 389-400 26-37 (75)
260 TIGR01818 ntrC nitrogen regula 23.1 28 0.00061 35.9 0.1 20 276-295 223-242 (463)
261 PF11305 DUF3107: Protein of u 23.1 2.4E+02 0.0052 23.3 5.4 58 6-80 15-74 (74)
262 PRK03957 V-type ATP synthase s 23.0 59 0.0013 27.6 2.0 23 267-289 30-52 (100)
263 PF03780 Asp23: Asp23 family; 23.0 1E+02 0.0022 25.4 3.5 38 176-213 4-41 (108)
264 PRK14971 DNA polymerase III su 23.0 1.1E+02 0.0023 34.1 4.5 65 127-208 162-226 (614)
265 KOG2170|consensus 22.5 65 0.0014 33.5 2.5 30 266-295 163-192 (344)
266 PRK10126 tyrosine phosphatase; 22.5 42 0.00091 29.9 1.0 29 127-155 66-94 (147)
267 TIGR00764 lon_rel lon-related 22.5 31 0.00066 38.2 0.2 19 276-294 212-230 (608)
268 PF07728 AAA_5: AAA domain (dy 22.2 1.1E+02 0.0025 25.9 3.7 45 13-59 78-122 (139)
269 KOG0728|consensus 22.0 59 0.0013 33.3 2.1 35 242-279 242-277 (404)
270 PF13173 AAA_14: AAA domain 22.0 61 0.0013 27.6 1.9 26 269-295 50-75 (128)
271 PRK06305 DNA polymerase III su 21.4 1.5E+02 0.0033 31.5 5.1 64 129-209 164-227 (451)
272 PRK15429 formate hydrogenlyase 21.3 51 0.0011 36.6 1.6 20 276-295 465-484 (686)
273 PRK11391 etp phosphotyrosine-p 21.3 48 0.001 29.6 1.2 29 127-155 66-94 (144)
274 TIGR00635 ruvB Holliday juncti 21.1 66 0.0014 31.3 2.2 15 281-295 81-95 (305)
275 KOG0733|consensus 20.9 70 0.0015 36.3 2.5 35 262-298 584-621 (802)
276 CHL00206 ycf2 Ycf2; Provisiona 20.8 70 0.0015 40.6 2.7 26 271-296 1722-1747(2281)
277 KOG3707|consensus 20.6 68 0.0015 36.2 2.3 102 129-277 149-256 (844)
278 PRK05564 DNA polymerase III su 20.5 2.5E+02 0.0054 27.8 6.2 24 131-155 138-161 (313)
279 COG0464 SpoVK ATPases of the A 20.4 67 0.0014 34.0 2.2 51 270-322 62-115 (494)
280 PRK08451 DNA polymerase III su 20.0 1.5E+02 0.0031 32.7 4.7 65 128-209 159-223 (535)
No 1
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-69 Score=531.32 Aligned_cols=217 Identities=48% Similarity=0.797 Sum_probs=202.7
Q ss_pred ccccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCC-CCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCC
Q psy11091 4 VTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPS 82 (408)
Q Consensus 4 ~~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~-~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~ 82 (408)
-.+|||||||||||||||||||||+++|||+|| ||| .|++++|||+||||||+|||+||++||.+|+++++|||+++.
T Consensus 180 N~SITRDVSGEGVQQALLKiiEGTvasVPPqGG-RKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~ 258 (408)
T COG1219 180 NPSITRDVSGEGVQQALLKIIEGTVASVPPQGG-RKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEV 258 (408)
T ss_pred CCCcccccCchHHHHHHHHHHcCceeccCCCCC-CCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccc
Confidence 368999999999999999999999999999999 777 689999999999999999999999999999999999999976
Q ss_pred CCccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHH
Q psy11091 83 TESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAM 162 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~l 162 (408)
... .......+++++++|+||++||++|||+||||++..+++|++++|.+||+||||++
T Consensus 259 ~~~---------------------~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAl 317 (408)
T COG1219 259 KSK---------------------SKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNAL 317 (408)
T ss_pred cch---------------------hhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHH
Confidence 421 01123457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCC-CCceEEEEeccccccccCccccc
Q psy11091 163 IQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241 (408)
Q Consensus 163 Lkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg-~~~~~V~Id~~~V~~~~~p~~~R 241 (408)
++||+++|++.|++|+|+++|++.||++|+++++|||+||++||.+|.|.|||+|+ .++.+|+||+++|.+..+|.++.
T Consensus 318 vKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l~~ 397 (408)
T COG1219 318 VKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLLIY 397 (408)
T ss_pred HHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCCceEEEEeHHHhCCCCCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999 56999999999999999998874
Q ss_pred c
Q psy11091 242 G 242 (408)
Q Consensus 242 G 242 (408)
.
T Consensus 398 ~ 398 (408)
T COG1219 398 A 398 (408)
T ss_pred c
Confidence 3
No 2
>KOG0745|consensus
Probab=100.00 E-value=1.4e-64 Score=513.28 Aligned_cols=235 Identities=58% Similarity=0.904 Sum_probs=214.5
Q ss_pred cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84 (408)
Q Consensus 5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~ 84 (408)
....||||||||||+||||||||+|+||.++.+|+.+++.++|||+||||||+|||+||||+|.+|+++++|||+++++.
T Consensus 310 i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~ 389 (564)
T KOG0745|consen 310 IHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSK 389 (564)
T ss_pred ccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCc
Confidence 34569999999999999999999999999999788899999999999999999999999999999999999999998641
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ 164 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk 164 (408)
+.+++ ++ ..++++.....++++|+++++.||+.|||+|||+||+|++|+|++|++++|.+||+||||++++
T Consensus 390 --~vr~~----~~---~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~ 460 (564)
T KOG0745|consen 390 --GVRAN----MA---TKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGK 460 (564)
T ss_pred --cchhh----cc---cccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHH
Confidence 11211 11 1123445566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCcccccccc
Q psy11091 165 QYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIV 244 (408)
Q Consensus 165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~~RGIv 244 (408)
||+++|.+.+++|.||++|++.||+.|+++++|||+||++||++|+++||++||++++.|+||+++|+|...|.+.+.+.
T Consensus 461 Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~g~~~~~~s~~~~ 540 (564)
T KOG0745|consen 461 QYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVKGEKEPGYSRKIL 540 (564)
T ss_pred HHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCCceEEEEecHHHhcccCCCccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred chhh
Q psy11091 245 FLDE 248 (408)
Q Consensus 245 fldE 248 (408)
--||
T Consensus 541 ~~~~ 544 (564)
T KOG0745|consen 541 KGDE 544 (564)
T ss_pred cccc
Confidence 6665
No 3
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=7.8e-52 Score=423.08 Aligned_cols=212 Identities=47% Similarity=0.817 Sum_probs=194.3
Q ss_pred cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84 (408)
Q Consensus 5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~ 84 (408)
.+++||||||||||+|||+|||+.++||+.+|++.+.+++++|||+||||||+|||+|++++|++|+++++|||++....
T Consensus 200 ~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~ 279 (413)
T TIGR00382 200 PSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKK 279 (413)
T ss_pred ccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccc
Confidence 46899999999999999999999999999888444478999999999999999999999999999999999999864211
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ 164 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk 164 (408)
. .....+.++++.++||++|||+|||+||||+|++|+||++++|.+|+++|+|++++
T Consensus 280 ~-----------------------~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~k 336 (413)
T TIGR00382 280 K-----------------------SKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVK 336 (413)
T ss_pred c-----------------------chhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 01224678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCC-CCceEEEEeccccccccCccc
Q psy11091 165 QYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSY 239 (408)
Q Consensus 165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg-~~~~~V~Id~~~V~~~~~p~~ 239 (408)
||+++|+.+||+|+|+++|+++||++|+++++|||+||++|++.|+++||++|+ .+++.|+||+++|.++.+|.+
T Consensus 337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~~~~~v~i~~~~v~~~~~~~~ 412 (413)
T TIGR00382 337 QYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSLEDLEKVVITKETVLKQSEPLL 412 (413)
T ss_pred HHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCCCCCcEEEECHHHHcCcCCCcc
Confidence 999999999999999999999999999999999999999999999999999999 468999999999999988865
No 4
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=2.6e-51 Score=419.14 Aligned_cols=216 Identities=47% Similarity=0.796 Sum_probs=196.7
Q ss_pred cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84 (408)
Q Consensus 5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~ 84 (408)
.+++||||||||||+||++|||+.++||+++|++.+.+++++|||+||||||+|||.|++++|.+|+++.+|||++....
T Consensus 192 ~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~ 271 (412)
T PRK05342 192 PSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKS 271 (412)
T ss_pred CCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcccccc
Confidence 46899999999999999999999999999988444478999999999999999999999999999999999999865321
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ 164 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk 164 (408)
. .+......+++++.|+||++|||+|||+||||+||+|++|++++|.+|+++|++++++
T Consensus 272 ~---------------------~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~ 330 (412)
T PRK05342 272 K---------------------KEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVK 330 (412)
T ss_pred c---------------------cccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0011125788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCC-CCceEEEEeccccccccCccccc
Q psy11091 165 QYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241 (408)
Q Consensus 165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg-~~~~~V~Id~~~V~~~~~p~~~R 241 (408)
||+++|+++||+|+|+++|+++||++|+++++|||+|+|+|++.|+++||++|+ .+.+.|+||+++|.+..+|.++.
T Consensus 331 q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~v~~~~~~~~~~ 408 (412)
T PRK05342 331 QYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDVEKVVITKEVVEGKAKPLLIY 408 (412)
T ss_pred HHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHHhccccCCeeee
Confidence 999999999999999999999999999999999999999999999999999998 57899999999999887788764
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=1.4e-44 Score=369.86 Aligned_cols=161 Identities=39% Similarity=0.575 Sum_probs=148.3
Q ss_pred cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84 (408)
Q Consensus 5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~ 84 (408)
.+++||||||||||+||||||||+|+++ . .+|||+||||||+|||+++
T Consensus 264 ~~~~~DvS~eGVQ~~LLkilEGt~v~~k--~---------~~v~T~~ILFI~~GAF~~~--------------------- 311 (441)
T TIGR00390 264 ESSGADVSREGVQRDLLPIVEGSTVNTK--Y---------GMVKTDHILFIAAGAFQLA--------------------- 311 (441)
T ss_pred CCCCCCCCccchhccccccccCceeeec--c---------eeEECCceeEEecCCcCCC---------------------
Confidence 3579999999999999999999999983 2 3899999999999999751
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ 164 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk 164 (408)
.|+| |+|||+||||++|.|++|++++|.+||+||+|++++
T Consensus 312 -----------------------------------kp~D-----lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLik 351 (441)
T TIGR00390 312 -----------------------------------KPSD-----LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIK 351 (441)
T ss_pred -----------------------------------Chhh-----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHH
Confidence 0123 799999999999999999999999999999999999
Q ss_pred HHHHHhccCCceEEeCHHHHHHHHHHhhc-----cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCc
Q psy11091 165 QYQILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237 (408)
Q Consensus 165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d-----~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p 237 (408)
||+++|+..||+|+||++|+++||+.|++ .++|||+||+++|++|+++||++|+.+++.|+||+++|.++..+
T Consensus 352 Qy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 352 QYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLGA 429 (441)
T ss_pred HHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHH
Confidence 99999999999999999999999999998 79999999999999999999999998899999999999866433
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=2.3e-44 Score=368.41 Aligned_cols=161 Identities=39% Similarity=0.573 Sum_probs=147.9
Q ss_pred cCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCcc
Q psy11091 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESA 86 (408)
Q Consensus 7 ~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~ 86 (408)
.++|||||||||+|||||||++|+++ . .+|||+||||||+|||++.
T Consensus 268 ~~~DvS~eGVQ~~LLki~EG~~v~~k--~---------~~i~T~~ILFI~~GAF~~~----------------------- 313 (443)
T PRK05201 268 SGPDVSREGVQRDLLPLVEGSTVSTK--Y---------GMVKTDHILFIASGAFHVS----------------------- 313 (443)
T ss_pred CCCCCCccchhcccccccccceeeec--c---------eeEECCceeEEecCCcCCC-----------------------
Confidence 58999999999999999999999983 2 3899999999999999741
Q ss_pred chhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHH
Q psy11091 87 GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQY 166 (408)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~ 166 (408)
.|+| |+|||+||||++|.|++|++++|.+||+||+|++++||
T Consensus 314 ---------------------------------kp~D-----lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy 355 (443)
T PRK05201 314 ---------------------------------KPSD-----LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQY 355 (443)
T ss_pred ---------------------------------Chhh-----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHH
Confidence 0123 78999999999999999999999999999999999999
Q ss_pred HHHhccCCceEEeCHHHHHHHHHHhhc-----cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCccc
Q psy11091 167 QILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239 (408)
Q Consensus 167 ~~~f~~~gI~L~ft~~Al~~IA~~a~d-----~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~ 239 (408)
+++|+..||+|+||++|+++||+.|++ .++|||+||++||++|+++||++|+.+++.|+||+++|.++..+.+
T Consensus 356 ~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 356 QALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred HHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHH
Confidence 999999999999999999999999998 7999999999999999999999999889999999999987754443
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=280.55 Aligned_cols=155 Identities=39% Similarity=0.621 Sum_probs=143.5
Q ss_pred CCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccc
Q psy11091 8 APDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAG 87 (408)
Q Consensus 8 ~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~ 87 (408)
++|||.||||..||.|+||++|+. +.| .|.|+|||||++|||.= +
T Consensus 270 ~~dvSREGVQRDlLPlvEGstV~T--KyG---------~VkTdHILFIasGAFh~---------s--------------- 314 (444)
T COG1220 270 GPDVSREGVQRDLLPLVEGSTVST--KYG---------PVKTDHILFIASGAFHV---------A--------------- 314 (444)
T ss_pred CCCcchhhhcccccccccCceeec--ccc---------ccccceEEEEecCceec---------C---------------
Confidence 349999999999999999999998 556 69999999999999931 0
Q ss_pred hhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHH
Q psy11091 88 RRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQ 167 (408)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~ 167 (408)
+ |.| ++||+.||||..|-+++|+.+|+.+||+||++++++||+
T Consensus 315 -------------K-------------------PSD-----LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~ 357 (444)
T COG1220 315 -------------K-------------------PSD-----LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYK 357 (444)
T ss_pred -------------C-------------------hhh-----cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHH
Confidence 1 113 799999999999999999999999999999999999999
Q ss_pred HHhccCCceEEeCHHHHHHHHHHhhc-----cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccc
Q psy11091 168 ILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKN 234 (408)
Q Consensus 168 ~~f~~~gI~L~ft~~Al~~IA~~a~d-----~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~ 234 (408)
++|+.+|+.|.||++|++.||+.|++ .+.|||.|..++|++|++..|++|+..++.|.||+++|..+
T Consensus 358 aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~ 429 (444)
T COG1220 358 ALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEK 429 (444)
T ss_pred HHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCccCCcCCCCeEEEcHHHHHHH
Confidence 99999999999999999999999996 57999999999999999999999999999999999999876
No 8
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.6e-24 Score=212.05 Aligned_cols=95 Identities=33% Similarity=0.455 Sum_probs=82.8
Q ss_pred chhhhcccCCCCcceeccccCcchHHHHHHHHHHh-------hccceEEeeccccccccC-CCccccCCCcccccccccc
Q psy11091 245 FLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSAL-------AAFGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLK 316 (408)
Q Consensus 245 fldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~-------a~~Givfideidki~~~~-~~~~~~dvs~egvQ~~ll~ 316 (408)
.||.+=.+|++|+.++++|| |||||.+|+|||.+ ||.||||||||||||+++ +.+.+||||||||||+||+
T Consensus 120 ~LnVPFaiADATtLTEAGYV-GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLK 198 (408)
T COG1219 120 ILNVPFAIADATTLTEAGYV-GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 198 (408)
T ss_pred HhCCCeeeccccchhhcccc-chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHH
Confidence 34555558899999999999 99999999999765 599999999999999985 5567999999999999999
Q ss_pred ccccceeeeCCCCcceeeecCCceeEE
Q psy11091 317 VSTSYLFYRYPNTGYLWYRYPNTGYIW 343 (408)
Q Consensus 317 ~~eg~~v~~~~~~~~~~~~~~~~~~~~ 343 (408)
|+|||++++|||+|. ..|+--+|-
T Consensus 199 iiEGTvasVPPqGGR---KHP~Qe~iq 222 (408)
T COG1219 199 IIEGTVASVPPQGGR---KHPQQEFIQ 222 (408)
T ss_pred HHcCceeccCCCCCC---CCCccceEE
Confidence 999999999999995 456665554
No 9
>KOG0745|consensus
Probab=99.84 E-value=6e-22 Score=202.87 Aligned_cols=108 Identities=34% Similarity=0.378 Sum_probs=88.6
Q ss_pred eEEEEeccccc-----cccCcccccccc-chhhhcccCCCCcceeccccCcchHHHHHHHHHHh-------hccceEEee
Q psy11091 222 LMVHITEDTVL-----KNTAPSYIRGIV-FLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSAL-------AAFGIVFLD 288 (408)
Q Consensus 222 ~~V~Id~~~V~-----~~~~p~~~RGIv-fldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~-------a~~Givfid 288 (408)
..|.+++++|. |..+..+-+... +||.+=.|++.++.+|++|| |||||++|.|||.. ||.||||||
T Consensus 220 ~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYV-GeDVEsvi~KLl~~A~~nVekAQqGIVflD 298 (564)
T KOG0745|consen 220 EDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYV-GEDVESVIQKLLQEAEYNVEKAQQGIVFLD 298 (564)
T ss_pred cceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccc-cccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence 47888998885 333344433333 56777778999999999999 99999999999654 599999999
Q ss_pred cccccccc-CCCccccCCCccccccccccccccceeeeCCCCc
Q psy11091 289 EVDKIGAV-PGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTG 330 (408)
Q Consensus 289 eidki~~~-~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~ 330 (408)
|||||+.+ ++.+..||||||||||+||||+||++|++|+..-
T Consensus 299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~ 341 (564)
T KOG0745|consen 299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341 (564)
T ss_pred hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCC
Confidence 99999966 4556679999999999999999999999986654
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=1.7e-20 Score=206.40 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=135.6
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
..||++||++||...++.. .|. +||++|.+|||+..+ |- ++|.+ ...++||++......
T Consensus 625 ~~v~~~Llq~le~g~~~d~-~g~---------~v~~~~~i~I~Tsn~-g~-~~i~~--~~~~~gf~~~~~~~~------- 683 (821)
T CHL00095 625 PDIFNLLLQILDDGRLTDS-KGR---------TIDFKNTLIIMTSNL-GS-KVIET--NSGGLGFELSENQLS------- 683 (821)
T ss_pred HHHHHHHHHHhccCceecC-CCc---------EEecCceEEEEeCCc-ch-HHHHh--hccccCCcccccccc-------
Confidence 5699999999998888863 222 789999999999886 42 44432 236799986431100
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
.... ..++....+++.++ |+|||+||||.||+|+||+.+++.+|+ +..++++.++|+.+
T Consensus 684 ---------------~~~~-~~~~~~~~~~~~~~-f~peflnRid~ii~F~pL~~~~l~~Iv----~~~l~~l~~rl~~~ 742 (821)
T CHL00095 684 ---------------EKQY-KRLSNLVNEELKQF-FRPEFLNRLDEIIVFRQLTKNDVWEIA----EIMLKNLFKRLNEQ 742 (821)
T ss_pred ---------------cccH-HHHHHHHHHHHHHh-cCHHHhccCCeEEEeCCCCHHHHHHHH----HHHHHHHHHHHHHC
Confidence 0000 11122222455566 999999999999999999999999999 89999999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEec
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITE 228 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~ 228 (408)
||.|+++++|+++||+.||++.+|||||+|+|++.+++++++. .+ ..+..|.|+.
T Consensus 743 ~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~ 801 (821)
T CHL00095 743 GIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDV 801 (821)
T ss_pred CcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999988 33 4667777775
No 11
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=205.35 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=124.2
Q ss_pred hHhhhhhhhhcCCeEeeCCCCCCCC-CCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 15 VHMWKLLCMLEGTIVNVPEKNSPRK-LRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 15 GVQQaLLKiLEGt~V~Vp~~gg~Rk-~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
-|++-||++|+...++.- .| |+ .+.++|.|.|||+ |+ +.+.+. .++ .....
T Consensus 608 dV~nilLQVlDdGrLTD~--~G-r~VdFrNtiIImTSN~-----Gs----~~i~~~------~~~-~~~~~--------- 659 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDG--QG-RTVDFRNTIIIMTSNA-----GS----EEILRD------ADG-DDFAD--------- 659 (786)
T ss_pred HHHHHHHHHhcCCeeecC--CC-CEEecceeEEEEeccc-----ch----HHHHhh------ccc-cccch---------
Confidence 489999999999999962 24 33 3677777777777 55 332221 111 00000
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
....+... - +.++..|+|||+||||.||+|++|+++++.+|+ +.+|++++++|+.+
T Consensus 660 --------------~~~~~~~v-----~-~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~~~L~~~ 715 (786)
T COG0542 660 --------------KEALKEAV-----M-EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLAKRLAER 715 (786)
T ss_pred --------------hhhHHHHH-----H-HHHHhhCCHHHHhhcccEEeccCCCHHHHHHHH----HHHHHHHHHHHHhC
Confidence 00001111 1 234455999999999999999999999999999 89999999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
|+.|+++++|+++|+++||++.||||||+|+||+.|++++++. .+ .++..|.|+.+
T Consensus 716 ~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~v~~~ 775 (786)
T COG0542 716 GITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred CceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEec
Confidence 9999999999999999999999999999999999999999987 33 45677777655
No 12
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.82 E-value=3.4e-20 Score=202.58 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=132.2
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
-.||+.||++||...++. ..| | ++|++|++||++.. .|.+.+. +.++||.....
T Consensus 571 ~~v~~~LLq~ld~G~ltd--~~g-~-------~vd~rn~iiI~TsN-~g~~~~~-----~~~~g~~~~~~---------- 624 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTD--NNG-R-------KADFRNVVLVMTTN-AGVRETE-----RKSIGLIHQDN---------- 624 (758)
T ss_pred HHHHHHHHHHHhcCeeec--CCC-c-------eecCCCcEEEEeCC-cCHHHHh-----hcccCcccchh----------
Confidence 369999999999887774 223 1 68999999999987 5765543 35689864210
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
....+ +.++..|+|||+||||.||+|+||+++++.+|+ +..+++++++|+.+
T Consensus 625 ------------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~----~~~l~~~~~~l~~~ 676 (758)
T PRK11034 625 ------------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQAQLDQK 676 (758)
T ss_pred ------------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHH----HHHHHHHHHHHHHC
Confidence 00011 233456999999999999999999999999999 89999999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
|+.|+++++|+++|++.||++.+|||+|+|+|++.|++++++. .+ .++..+.|+.+
T Consensus 677 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~~~ 736 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALD 736 (758)
T ss_pred CCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999987 33 46677888764
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=6.8e-18 Score=183.68 Aligned_cols=160 Identities=18% Similarity=0.334 Sum_probs=126.3
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
..||+.||++||...++. ..| | ++|.+|.+|||+... |.+.+ .+.++||.....
T Consensus 567 ~~~~~~Ll~~ld~g~~~d--~~g-~-------~vd~~~~iii~Tsn~-g~~~~-----~~~~~~f~~~~~---------- 620 (731)
T TIGR02639 567 PDIYNILLQVMDYATLTD--NNG-R-------KADFRNVILIMTSNA-GASEM-----SKPPIGFGSENV---------- 620 (731)
T ss_pred HHHHHHHHHhhccCeeec--CCC-c-------ccCCCCCEEEECCCc-chhhh-----hhccCCcchhhh----------
Confidence 469999999999988864 233 2 577778888877663 43322 234588853210
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
.. ...+.++..|.|||+||||.+|+|+||+.+++.+|+ +..+++++++|+.+
T Consensus 621 ------------------~~------~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv----~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 621 ------------------ES------KSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIV----QKFVDELSKQLNEK 672 (731)
T ss_pred ------------------HH------HHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHH----HHHHHHHHHHHHhC
Confidence 00 012334556999999999999999999999999999 88999999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEe
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHIT 227 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id 227 (408)
|+.|.++++++++|++.+|++.+|||+|+|+|++.|++++++. .+ .++..+.|+
T Consensus 673 ~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~~ 730 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKVD 730 (731)
T ss_pred CCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEEe
Confidence 9999999999999999999999999999999999999999987 33 456666665
No 14
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.8e-18 Score=169.85 Aligned_cols=71 Identities=31% Similarity=0.436 Sum_probs=58.6
Q ss_pred cCcchHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCcceeeecCCceeEE
Q psy11091 264 VGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIW 343 (408)
Q Consensus 264 V~gedv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~~~~~~~~~~~~ 343 (408)
+..|.+.+..++..| |+||||||||||||++++ ++++||||||||||||||||||+|+|- |+--.|-+|-
T Consensus 235 id~e~i~~eAi~~aE--~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~TK-------yG~VkTdHIL 304 (444)
T COG1220 235 IDQEEIKQEAIDAAE--QNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVSTK-------YGPVKTDHIL 304 (444)
T ss_pred cCHHHHHHHHHHHHH--hcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceeecc-------ccccccceEE
Confidence 556788888888888 999999999999999976 345599999999999999999999973 5544555554
Q ss_pred E
Q psy11091 344 Y 344 (408)
Q Consensus 344 ~ 344 (408)
|
T Consensus 305 F 305 (444)
T COG1220 305 F 305 (444)
T ss_pred E
Confidence 3
No 15
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.61 E-value=3.7e-16 Score=161.33 Aligned_cols=57 Identities=35% Similarity=0.448 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
.++|.+..++..| |+||||||||||||+++++ +++||||||||||||||+|||+|+|
T Consensus 236 ~~~v~~~ai~~ae--~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~ 292 (443)
T PRK05201 236 MEEIKQEAIERVE--QNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVST 292 (443)
T ss_pred hHHHHHHHHHHHH--cCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeee
Confidence 3455555554444 9999999999999998654 5789999999999999999999998
No 16
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.61 E-value=3.8e-16 Score=161.16 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=49.7
Q ss_pred cCcchHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 264 VGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 264 V~gedv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
+..++|.+..++..| |+||||||||||||++++ +.++||||||||||||||+|||+|+|
T Consensus 232 id~~~v~~~a~~~~e--~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilEGt~v~~ 290 (441)
T TIGR00390 232 VDPEEIKQEAIDAVE--QSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVEGSTVNT 290 (441)
T ss_pred cChHHHHHHHHHHHH--cCCEEEEEchhhhcccCC-CCCCCCCccchhccccccccCceeee
Confidence 444566666666555 999999999999998864 35799999999999999999999998
No 17
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=4.2e-15 Score=164.75 Aligned_cols=152 Identities=18% Similarity=0.321 Sum_probs=113.3
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
..||+.||++|+...++.. .| | .||++|.+||++... |-+.+.+. . .++.....
T Consensus 682 ~~v~~~Llq~ld~g~l~d~--~G-r-------~vd~~n~iiI~TSNl-g~~~~~~~-~----~~~~~~~~---------- 735 (852)
T TIGR03345 682 PDVLELFYQVFDKGVMEDG--EG-R-------EIDFKNTVILLTSNA-GSDLIMAL-C----ADPETAPD---------- 735 (852)
T ss_pred HHHHHHHHHHhhcceeecC--CC-c-------EEeccccEEEEeCCC-chHHHHHh-c----cCcccCcc----------
Confidence 4689999999998887752 23 1 588888888887653 43333221 1 11110000
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
... +.......+.+ .|+|||+||++ +|+|+||+.+++.+|+ ...++++.+++..+
T Consensus 736 ------------------~~~-~~~~~~~~~~~-~f~PEflnRi~-iI~F~pLs~e~l~~Iv----~~~L~~l~~rl~~~ 790 (852)
T TIGR03345 736 ------------------PEA-LLEALRPELLK-VFKPAFLGRMT-VIPYLPLDDDVLAAIV----RLKLDRIARRLKEN 790 (852)
T ss_pred ------------------hHH-HHHHHHHHHHH-hccHHHhccee-EEEeCCCCHHHHHHHH----HHHHHHHHHHHHHh
Confidence 000 11111123333 49999999997 8999999999999999 78888888888766
Q ss_pred -CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC
Q psy11091 174 -KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV 216 (408)
Q Consensus 174 -gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~ 216 (408)
|+.|+++++|+++|++.|+++.+|||+|+|+|++.|.+++++.
T Consensus 791 ~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 791 HGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred cCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986
No 18
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=3.1e-15 Score=165.84 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=123.6
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhh
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAAS 92 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~ 92 (408)
...||+.||++||...++- ..| .++|.+|.+|||+..+ |-+. +.++ |+....
T Consensus 683 ~~~v~~~Ll~ile~g~l~d--~~g--------r~vd~rn~iiI~TSN~-g~~~-~~~~-------~~~~~~--------- 734 (857)
T PRK10865 683 HPDVFNILLQVLDDGRLTD--GQG--------RTVDFRNTVVIMTSNL-GSDL-IQER-------FGELDY--------- 734 (857)
T ss_pred CHHHHHHHHHHHhhCceec--CCc--------eEEeecccEEEEeCCc-chHH-HHHh-------ccccch---------
Confidence 3569999999998777653 222 2688888888888776 3222 3322 221100
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhcc
Q psy11091 93 LADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTM 172 (408)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~ 172 (408)
+. ..... .+.++..|+|||+||||.+++|+||+.+++.+|+ +..++++.++++.
T Consensus 735 -~~---------------~~~~~------~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv----~~~L~~l~~rl~~ 788 (857)
T PRK10865 735 -AH---------------MKELV------LGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIA----QIQLQRLYKRLEE 788 (857)
T ss_pred -HH---------------HHHHH------HHHHcccccHHHHHhCCeeEecCCCCHHHHHHHH----HHHHHHHHHHHHh
Confidence 00 00000 1234456999999999999999999999999999 8899998888888
Q ss_pred CCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEec
Q psy11091 173 DKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITE 228 (408)
Q Consensus 173 ~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~ 228 (408)
+|+.+.++++|+++|++.+|++.||||||+|+|++.+++++++. .+ .++..|.|+.
T Consensus 789 ~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 789 RGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred CCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEE
Confidence 89999999999999999999999999999999999999999987 33 4667777775
No 19
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=9.5e-15 Score=161.77 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=121.4
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
-.||+.||++||...++. ..| .++|.+|.+|||+... |.+.+... . -++ . .
T Consensus 681 ~~v~~~Ll~~l~~g~l~d--~~g--------~~vd~rn~iiI~TSn~-g~~~~~~~-~----~~~--~-~---------- 731 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTD--GQG--------RTVDFRNTVIIMTSNL-GSQFIQEL-A----GGD--D-Y---------- 731 (852)
T ss_pred HHHHHHHHHHHhcCceec--CCC--------eEEecCCcEEEEeCCc-chHhHhhh-c----ccc--c-H----------
Confidence 368999999998887773 222 2677777777777663 44333211 0 000 0 0
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
....... .+.++..|+|||+||||.|++|+||+.+++.+|+ ...+..+.++++.+
T Consensus 732 ---------------~~~~~~~------~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~----~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 732 ---------------EEMREAV------MEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIV----EIQLGRLRKRLAER 786 (852)
T ss_pred ---------------HHHHHHH------HHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHH----HHHHHHHHHHHHHC
Confidence 0000001 1222345999999999999999999999999999 78899999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEec
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITE 228 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~ 228 (408)
|+.+.++++|+++|++.++++.+|||+|+++|++.+++++++. .+ ..+..+.|+.
T Consensus 787 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~ 845 (852)
T TIGR03346 787 KITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred CCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999987 33 4567777775
No 20
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.57 E-value=8e-16 Score=140.69 Aligned_cols=88 Identities=26% Similarity=0.429 Sum_probs=66.3
Q ss_pred cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091 5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84 (408)
Q Consensus 5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~ 84 (408)
.+.++||||++||++|||+||+++++.. . + .+|||+|++|||+|+|.+.......+.. ..
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le~g~~~d~-~-g--------~~vd~~n~ifI~Tsn~~~~~~~~~~~~~-------~~--- 143 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLEGGTLTDS-Y-G--------RTVDTSNIIFIMTSNFGAEEIIDASRSG-------EA--- 143 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSEEEET-T-C--------CEEEGTTEEEEEEESSSTHHHHHCHHHC-------TC---
T ss_pred ccccchhhHHHHHHHHHHHhcccceecc-c-c--------eEEEeCCceEEEecccccchhhhhhccc-------cc---
Confidence 4678999999999999999999999952 1 1 4899999999999999987655443332 00
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCce
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPIL 140 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~I 140 (408)
.........++++++||+|||+||||+|
T Consensus 144 ----------------------------~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 144 ----------------------------IEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ----------------------------CHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ----------------------------cHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0111233456899999999999999986
No 21
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.43 E-value=2.7e-13 Score=109.03 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCC--C--CCc
Q psy11091 146 LNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVP--G--SDI 221 (408)
Q Consensus 146 Ls~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~p--g--~~~ 221 (408)
|++++|.+|+ +..+++++++|+.+|++|+|+++++++|++.|+++.+|||||+|+|++.+++++++.- + .++
T Consensus 1 L~~~~l~~I~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g 76 (81)
T PF10431_consen 1 LSEEDLEKIA----DLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEG 76 (81)
T ss_dssp --HHHHHHHH----HSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTT
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 7899999999 7899999999999999999999999999999999999999999999999999999882 2 356
Q ss_pred eEEEE
Q psy11091 222 LMVHI 226 (408)
Q Consensus 222 ~~V~I 226 (408)
..|.|
T Consensus 77 ~~v~v 81 (81)
T PF10431_consen 77 DTVRV 81 (81)
T ss_dssp CEEEE
T ss_pred CEeeC
Confidence 66654
No 22
>KOG1051|consensus
Probab=99.33 E-value=1.7e-12 Score=143.76 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=118.8
Q ss_pred hHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhhh
Q psy11091 15 VHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLA 94 (408)
Q Consensus 15 GVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~~ 94 (408)
=||..||++||-..++-- +|. +||.+|++||++-. .|-+.+... .+ .++|-...... .
T Consensus 675 ~v~n~llq~lD~GrltDs-~Gr---------~Vd~kN~I~IMTsn-~~~~~i~~~-~~--~~~~l~~~~~~---~----- 732 (898)
T KOG1051|consen 675 DVLNILLQLLDRGRLTDS-HGR---------EVDFKNAIFIMTSN-VGSSAIAND-AS--LEEKLLDMDEK---R----- 732 (898)
T ss_pred HHHHHHHHHHhcCccccC-CCc---------EeeccceEEEEecc-cchHhhhcc-cc--cccccccchhh---h-----
Confidence 489999999999999862 222 68888888887755 232322221 11 23332211000 0
Q ss_pred hhhhhccchhhhhhhhhHHHHhhhccchhhhh----cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHh
Q psy11091 95 DLANQSAAVSAEEDNKEKDAFLKQVEARDLID----FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILF 170 (408)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik----~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f 170 (408)
...-+......|..+ ..|+|||+||+|.++.|++|+.+++.+|+ +.++.+..+++
T Consensus 733 -----------------~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~----~~~~~e~~~r~ 791 (898)
T KOG1051|consen 733 -----------------GSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIV----NKQLTEIEKRL 791 (898)
T ss_pred -----------------hhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhh----hhHHHHHHHHh
Confidence 000001122234444 67999999999999999999999999999 89999999999
Q ss_pred ccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCC
Q psy11091 171 TMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVP 217 (408)
Q Consensus 171 ~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~p 217 (408)
+..++.+.+++.+..+++.++|++.||||+|+|.|++.+++.|+..-
T Consensus 792 ~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051|consen 792 EERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred hhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999998763
No 23
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.13 E-value=2.6e-11 Score=125.12 Aligned_cols=76 Identities=37% Similarity=0.474 Sum_probs=63.3
Q ss_pred CcceeccccCcchHHHHHHHHH-------HhhccceEEeeccccccccCC-CccccCCCccccccccccccccceeeeCC
Q psy11091 256 PGIHQLRDVGGEGVQQGMLKVS-------ALAAFGIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327 (408)
Q Consensus 256 ~~~~~tRDV~gedv~~~l~kll-------~~a~~Givfideidki~~~~~-~~~~~dvs~egvQ~~ll~~~eg~~v~~~~ 327 (408)
+.++..+++ |+|++.++.+++ ++|+.||||||||||+..+.. .+.++||||+|||+.||+++||+.+++|+
T Consensus 142 ~~l~~~gyv-G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 142 TTLTEAGYV-GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhcccCCcc-cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 344555677 889999988875 456899999999999998733 34579999999999999999999999999
Q ss_pred CCcce
Q psy11091 328 NTGYL 332 (408)
Q Consensus 328 ~~~~~ 332 (408)
+.|..
T Consensus 221 ~gg~~ 225 (412)
T PRK05342 221 QGGRK 225 (412)
T ss_pred CCCcC
Confidence 98843
No 24
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.10 E-value=3.6e-10 Score=124.95 Aligned_cols=99 Identities=14% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.|++|+. +|.|.+++.+++.+|+. ..++.+..++....+.+|+++++|+++|++ +|++.+|||+|+|.|+++
T Consensus 477 i~~aLl~R~~-ii~~~~~t~eek~~Ia~---~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i 551 (784)
T PRK10787 477 IPAPLLDRME-VIRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKL 551 (784)
T ss_pred CCHHHhccee-eeecCCCCHHHHHHHHH---HhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHH
Confidence 6788999995 78999999999999993 445533334445667799999999999997 999999999999999999
Q ss_pred hhhhhccCC-CCCceEEEEeccccc
Q psy11091 209 LLDSMYEVP-GSDILMVHITEDTVL 232 (408)
Q Consensus 209 L~d~l~d~p-g~~~~~V~Id~~~V~ 232 (408)
+..++.++- +.....|+|+.+.+.
T Consensus 552 ~r~~l~~~~~~~~~~~v~v~~~~~~ 576 (784)
T PRK10787 552 CRKAVKQLLLDKSLKHIEINGDNLH 576 (784)
T ss_pred HHHHHHHHHhcCCCceeeecHHHHH
Confidence 999999873 345678999988875
No 25
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.05 E-value=8.6e-11 Score=121.47 Aligned_cols=91 Identities=33% Similarity=0.439 Sum_probs=68.8
Q ss_pred CCcceeccccCcchHHHHHHHHHH-------hhccceEEeeccccccccC-CCccccCCCccccccccccccccceeeeC
Q psy11091 255 VPGIHQLRDVGGEGVQQGMLKVSA-------LAAFGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKVSTSYLFYRY 326 (408)
Q Consensus 255 ~~~~~~tRDV~gedv~~~l~kll~-------~a~~Givfideidki~~~~-~~~~~~dvs~egvQ~~ll~~~eg~~v~~~ 326 (408)
.+..+..+++ |+|++.+|.+++. +|+.||||||||||++.+. +.+.++||||||||+.||+++||+.+++|
T Consensus 149 a~~L~~~gyv-G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLTEAGYV-GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhccccccc-cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 3444455677 8899998888754 5688999999999999863 33457999999999999999999999999
Q ss_pred CCCcceeeecCCceeEEEEeCCc
Q psy11091 327 PNTGYLWYRYPNTGYIWYRYPNT 349 (408)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (408)
++.|.. .|...+|-.-=-|-
T Consensus 228 ~~~gr~---~~~~~~i~i~TsNi 247 (413)
T TIGR00382 228 PQGGRK---HPYQEFIQIDTSNI 247 (413)
T ss_pred cCCCcc---ccCCCeEEEEcCCc
Confidence 988754 23344444433343
No 26
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.67 E-value=1.5e-09 Score=99.49 Aligned_cols=57 Identities=32% Similarity=0.427 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHh-------hccceEEeeccccccccCCCccccCCCccccccccccccccceee
Q psy11091 266 GEGVQQGMLKVSAL-------AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFY 324 (408)
Q Consensus 266 gedv~~~l~kll~~-------a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~ 324 (408)
++|++..+-+|+.. ++.||||||||||+..+ .+.++||||++||++||+++|+..+.
T Consensus 46 ~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~ 109 (171)
T PF07724_consen 46 GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLT 109 (171)
T ss_dssp HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEE
T ss_pred cchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhccccee
Confidence 56666666666544 38899999999999987 33578999999999999999999998
No 27
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.57 E-value=1.6e-07 Score=103.77 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|+|++|+. ++.|.+++.+++.+|+. ..++.+..+......-.++++++|+++|++ +|.+.+|+|+|+|.|+++
T Consensus 476 i~~~L~~R~~-vi~~~~~~~~e~~~I~~---~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 476 IPRPLLDRME-VIELSGYTEEEKLEIAK---KYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKI 550 (775)
T ss_pred CCHHHhCCee-EEecCCCCHHHHHHHHH---HHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHH
Confidence 6789999995 78999999999999993 444444333222222378999999999999 799999999999999999
Q ss_pred hhhhhccCCC-CCc-----eEEEEeccccc
Q psy11091 209 LLDSMYEVPG-SDI-----LMVHITEDTVL 232 (408)
Q Consensus 209 L~d~l~d~pg-~~~-----~~V~Id~~~V~ 232 (408)
+.....++.. ... -.|.|+++.+.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 580 (775)
T TIGR00763 551 CRKAAVKLVEQGEKKKSEAESVVITPDNLK 580 (775)
T ss_pred HHHHHHHHHhccCcccCCcccccCCHHHHH
Confidence 9999887653 222 23778777653
No 28
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=4.2e-05 Score=75.61 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCc-chhHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG-ARGLRAIMES 207 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~G-AR~LrriIe~ 207 (408)
+.|+|.+|++.++.|.+++.+++.+|+ ..++++....+...+ .+.+.+++++.+.++.+| ||.+|+++++
T Consensus 179 ~np~L~sR~~~~i~F~~~t~~el~~I~----~~~l~~~~~~l~~~~-----~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 179 SNPGLSSRIANHVDFPDYTPEELLQIA----KIMLEEQQYQLTPEA-----EKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cCHHHHHhCCceEEcCCcCHHHHHHHH----HHHHHHhcCCCChhH-----HHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 459999999999999999999999999 676666543333222 234456666667778999 9999999999
Q ss_pred hhhhhhccC
Q psy11091 208 LLLDSMYEV 216 (408)
Q Consensus 208 ~L~d~l~d~ 216 (408)
.+...-..+
T Consensus 250 ~~~~~~~r~ 258 (287)
T CHL00181 250 ARMRQANRI 258 (287)
T ss_pred HHHHHHHHH
Confidence 988776555
No 29
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.16 E-value=0.0016 Score=64.30 Aligned_cols=75 Identities=25% Similarity=0.327 Sum_probs=59.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHH----hhccCCc-chhHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL----ALEKKTG-ARGLRA 203 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~----a~d~~~G-AR~Lrr 203 (408)
+.|+|.+|++..+.|.+++.+++..|+ ...+++.. ..+++++.+.+++. ..++.+| ||.|+.
T Consensus 178 ~np~L~sR~~~~i~fp~l~~edl~~I~----~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 178 SNPGFSSRVAHHVDFPDYSEAELLVIA----GLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred hCHHHHhhCCcEEEeCCcCHHHHHHHH----HHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 479999999999999999999999999 56665532 34677777776654 4567788 999999
Q ss_pred HHHHhhhhhhccC
Q psy11091 204 IMESLLLDSMYEV 216 (408)
Q Consensus 204 iIe~~L~d~l~d~ 216 (408)
++++.+...-..+
T Consensus 245 ~ve~~~~~~~~r~ 257 (284)
T TIGR02880 245 AIDRARLRQANRL 257 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988765544
No 30
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0084 Score=66.41 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=73.2
Q ss_pred ccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhh
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLL 210 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~ 210 (408)
+-++.|+- ||.+..-++++=.+|++ +-++.+..+.-....-+|+|+++|+..|.+. |.++-|.|.|+|.|.+++.
T Consensus 481 ~PLlDRME-iI~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 481 APLLDRME-VIRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICR 555 (782)
T ss_pred hHHhccee-eeeecCCChHHHHHHHH---HhcchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHH
Confidence 33455554 77899999999999994 5555554444344455899999999999976 8999999999999999888
Q ss_pred hhhccCCCCCceE-EEEeccccc
Q psy11091 211 DSMYEVPGSDILM-VHITEDTVL 232 (408)
Q Consensus 211 d~l~d~pg~~~~~-V~Id~~~V~ 232 (408)
-..-++-..+.+. |.||...+.
T Consensus 556 K~~~~i~~~~~k~~~~i~~~~l~ 578 (782)
T COG0466 556 KAAKKILLKKEKSIVKIDEKNLK 578 (782)
T ss_pred HHHHHHHhcCcccceeeCHHHHH
Confidence 7777764444444 688887765
No 31
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.56 E-value=0.07 Score=51.53 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=57.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh------ccCCc-chhH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL------EKKTG-ARGL 201 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~------d~~~G-AR~L 201 (408)
+.|.|..|++..+.|.+++.+++.+|+ ...+++ . .+.++++|+++|++..- ...+| ||-+
T Consensus 161 ~~p~L~sRf~~~i~f~~~~~~el~~Il----~~~~~~-------~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIA----ERMVKE-------R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred cChHHHhccceEEEECCCCHHHHHHHH----HHHHHH-------c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 568999999999999999999999999 333322 2 34689999999977531 22233 7999
Q ss_pred HHHHHHhhhhhhccC
Q psy11091 202 RAIMESLLLDSMYEV 216 (408)
Q Consensus 202 rriIe~~L~d~l~d~ 216 (408)
+.++++.+......+
T Consensus 228 ~n~~e~a~~~~~~r~ 242 (261)
T TIGR02881 228 RNIIEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887776554
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.055 Score=56.17 Aligned_cols=46 Identities=35% Similarity=0.400 Sum_probs=31.3
Q ss_pred HHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 272 GMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 272 ~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
+..+|-+.| .--||||||||-|+++.-..++ . +..=|||-||.|+.
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t-~-gDrEVQRTmleLL~ 280 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGT-S-GDREVQRTMLELLN 280 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCC-C-chHHHHHHHHHHHH
Confidence 344444444 7789999999999987432111 1 23469999999875
No 33
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=92.45 E-value=0.88 Score=48.92 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=56.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHH----H----HHHHhccC-Cce-------------EEeCHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ----Q----YQILFTMD-KVD-------------LTFSPEALQA 186 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk----q----~~~~f~~~-gI~-------------L~ft~~Al~~ 186 (408)
+.+.|+.|||.++.+.+++.++|.+--.+.....++ + ..++|+.. ++. ..+++++.+.
T Consensus 374 is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 374 LSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred ccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 678899999999999999988775411111111111 1 12233221 112 2457778777
Q ss_pred HHHHhhccCCcchhHHHHHHHhhhhhhccCCCC
Q psy11091 187 IARLALEKKTGARGLRAIMESLLLDSMYEVPGS 219 (408)
Q Consensus 187 IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg~ 219 (408)
+.+..-..+..+|+..|++. +...++|+.+.
T Consensus 454 l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 454 LEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred HHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 77777677899999999885 45566777653
No 34
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.17 E-value=0.48 Score=50.58 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCCccccccCCc-eeecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 128 GMIPEFVGRFPI-LVPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 128 Gf~PEFlgRLd~-IV~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
.|+++|..||+. .|.+-||. .+|+..++ +..++++.+.+. ..+.|+++|++.|.+.... --.|-|+++
T Consensus 350 ~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~----~~~l~~~~~~~~---~~~~~s~~a~~~L~~~~WP--GNvrEL~~v 420 (534)
T TIGR01817 350 EFRADLYYRINVVPIFLPPLRERREDIPLLA----EAFLEKFNRENG---RPLTITPSAIRVLMSCKWP--GNVRELENC 420 (534)
T ss_pred CCCHHHHHHhcCCeeeCCCcccccccHHHHH----HHHHHHHHHHcC---CCCCCCHHHHHHHHhCCCC--ChHHHHHHH
Confidence 389999999987 46677788 68899888 788888776543 3368999999999986553 346899999
Q ss_pred HHHhhh
Q psy11091 205 MESLLL 210 (408)
Q Consensus 205 Ie~~L~ 210 (408)
|++.+.
T Consensus 421 ~~~a~~ 426 (534)
T TIGR01817 421 LERTAT 426 (534)
T ss_pred HHHHHH
Confidence 998875
No 35
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=90.74 E-value=0.87 Score=49.09 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. .+.|.+|+.+++.+|+ ...+++ .+ +.++++|++.|++.+. -.|-+..+++..
T Consensus 247 L~paLrsR~~-~I~f~pL~~eei~~Il----~~~a~k-------~~--i~is~~al~~I~~y~~----n~Rel~nll~~A 308 (531)
T TIGR02902 247 IPPALRSRCV-EIFFRPLLDEEIKEIA----KNAAEK-------IG--INLEKHALELIVKYAS----NGREAVNIVQLA 308 (531)
T ss_pred CChHHhhhhh-eeeCCCCCHHHHHHHH----HHHHHH-------cC--CCcCHHHHHHHHHhhh----hHHHHHHHHHHH
Confidence 4577777875 6679999999999999 332222 23 5789999999988664 258888888776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
..
T Consensus 309 a~ 310 (531)
T TIGR02902 309 AG 310 (531)
T ss_pred HH
Confidence 54
No 36
>KOG0726|consensus
Probab=89.77 E-value=0.14 Score=52.44 Aligned_cols=75 Identities=28% Similarity=0.346 Sum_probs=47.9
Q ss_pred cCCCCcceeccccCcchHHH----------HHHHHHHhhccceEEeeccccccccCC-CccccCCCcccccccccccccc
Q psy11091 252 IGAVPGIHQLRDVGGEGVQQ----------GMLKVSALAAFGIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 252 ia~~~~~~~tRDV~gedv~~----------~l~kll~~a~~Givfideidki~~~~~-~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.|-+++.+-.|-||-|=+|. .|.++.+.-.-.||||||||-|..+.= ++++ +..-+||-+|-++.
T Consensus 239 VANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg---gerEiQrtmLELLN- 314 (440)
T KOG0726|consen 239 VANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG---GEREIQRTMLELLN- 314 (440)
T ss_pred HhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc---cHHHHHHHHHHHHH-
Confidence 34456666677786665554 334444444779999999999987632 1111 23569999998764
Q ss_pred ceeeeCCCCcceeeec
Q psy11091 321 YLFYRYPNTGYLWYRY 336 (408)
Q Consensus 321 ~~v~~~~~~~~~~~~~ 336 (408)
--.||-++++
T Consensus 315 ------QldGFdsrgD 324 (440)
T KOG0726|consen 315 ------QLDGFDSRGD 324 (440)
T ss_pred ------hccCccccCC
Confidence 2346666554
No 37
>KOG0738|consensus
Probab=89.43 E-value=0.27 Score=51.83 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=36.6
Q ss_pred HHHHHHHHhhccceEEeeccccccccCCCccccCCCc----------cccccccccccccceeeeCCCCccee
Q psy11091 271 QGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGG----------EGVQQGMLKVSTSYLFYRYPNTGYLW 333 (408)
Q Consensus 271 ~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~----------egvQ~~ll~~~eg~~v~~~~~~~~~~ 333 (408)
..|.+|...-.-.+|||||||.||++.++.+-...|+ .|||..+=- .-.|.|=.-+++-|
T Consensus 294 RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~---~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 294 RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN---SKVVMVLAATNFPW 363 (491)
T ss_pred HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc---ceeEEEEeccCCCc
Confidence 3444444333788999999999999865433334444 366654321 24567766666665
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=88.91 E-value=0.21 Score=49.66 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 273 MLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 273 l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..+++++|..||+||||+|.++...+ ..+.+ .-+|..|+.++|.
T Consensus 114 ~~~~l~~a~ggVLfIDE~~~l~~~~~---~~~~~-~e~~~~L~~~me~ 157 (287)
T CHL00181 114 TKEVLKKAMGGVLFIDEAYYLYKPDN---ERDYG-SEAIEILLQVMEN 157 (287)
T ss_pred HHHHHHHccCCEEEEEccchhccCCC---ccchH-HHHHHHHHHHHhc
Confidence 45678888999999999999976422 23443 4577899998874
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.15 E-value=0.22 Score=41.37 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHhh---c-cceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 266 GEGVQQGMLKVSALA---A-FGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 266 gedv~~~l~kll~~a---~-~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
..+.++.+.+++.+| . ..|+||||+|+++...+ ...+...+.+++.|+..++..
T Consensus 39 ~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~~~~~~~~~~~L~~~l~~~ 96 (132)
T PF00004_consen 39 AGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSSSSFEQRLLNQLLSLLDNP 96 (132)
T ss_dssp TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSSSHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccceeeeeccchhcccccc--cccccccccccceeeeccccc
Confidence 345666777777765 3 68999999999998762 122333455666777766643
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.04 E-value=0.22 Score=48.02 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 270 QQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 270 ~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+..+.+++++|..||+||||||.++...+ .+ .+.-+|..||+.+|..
T Consensus 94 ~~~~~~~~~~a~~~VL~IDE~~~L~~~~~----~~-~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 94 AQKTREVIKKALGGVLFIDEAYSLARGGE----KD-FGKEAIDTLVKGMEDN 140 (261)
T ss_pred HHHHHHHHHhccCCEEEEechhhhccCCc----cc-hHHHHHHHHHHHHhcc
Confidence 44556788889999999999999975321 11 2334677899988764
No 41
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.85 E-value=1.1 Score=50.91 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=43.8
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
.+.+..|. .++.|++|+.++|.++| ++.|+.+| +.++++++..|++.+- -..|.+.+.|++++
T Consensus 164 l~TIrSRc-~~v~F~~l~~~~l~~~L-----------~~il~~EG--v~id~eal~lLa~~sg---GdlR~Al~eLEKLi 226 (824)
T PRK07764 164 IGTIRSRT-HHYPFRLVPPEVMRGYL-----------ERICAQEG--VPVEPGVLPLVIRAGG---GSVRDSLSVLDQLL 226 (824)
T ss_pred hHHHHhhe-eEEEeeCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 34444554 37789999999998888 22334456 4579999999988874 23567777777766
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.12 E-value=0.28 Score=48.53 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=32.9
Q ss_pred HHHHHHHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 272 GMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 272 ~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
-+.+++++|..|++||||||.++...+ .++. +.-+|..||.++|.
T Consensus 112 ~~~~~~~~a~~gvL~iDEi~~L~~~~~---~~~~-~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 112 KTKEILKRAMGGVLFIDEAYYLYRPDN---ERDY-GQEAIEILLQVMEN 156 (284)
T ss_pred HHHHHHHHccCcEEEEechhhhccCCC---ccch-HHHHHHHHHHHHhc
Confidence 345678889999999999999975422 1233 34578889999974
No 43
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.68 E-value=1.8 Score=43.83 Aligned_cols=76 Identities=13% Similarity=0.264 Sum_probs=57.8
Q ss_pred CCccccccCCc-eeecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||.. .|.+-||. .+|+..++ +..+.++...+.. .+...|+++|++.|.+.....+ .|-|+++|
T Consensus 154 fr~dL~~rl~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~~~~~-~~~~~ls~~a~~~L~~y~WPGN--vrEL~n~i 226 (329)
T TIGR02974 154 FRADLLDRLAFDVITLPPLRERQEDIMLLA----EHFAIRMARELGL-PLFPGFTPQAREQLLEYHWPGN--VRELKNVV 226 (329)
T ss_pred hHHHHHHHhcchhcCCCchhhhhhhHHHHH----HHHHHHHHHHhCC-CCCCCcCHHHHHHHHhCCCCch--HHHHHHHH
Confidence 88899999954 78888898 68888888 6777777665421 2225799999999998766443 68899999
Q ss_pred HHhhhh
Q psy11091 206 ESLLLD 211 (408)
Q Consensus 206 e~~L~d 211 (408)
++.+..
T Consensus 227 ~~~~~~ 232 (329)
T TIGR02974 227 ERSVYR 232 (329)
T ss_pred HHHHHh
Confidence 988764
No 44
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=86.43 E-value=0.65 Score=52.13 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|. .++.|.||+.+++..|+ ...+++....+... .+.++++|++.|++.+ .--+|.+..+++..
T Consensus 152 l~~aL~SR~-~v~~l~pLs~edi~~IL----~~~l~~~~~~~g~~--~v~I~deaL~~La~~s---~GD~R~lln~Le~a 221 (725)
T PRK13341 152 VNKALVSRS-RLFRLKSLSDEDLHQLL----KRALQDKERGYGDR--KVDLEPEAEKHLVDVA---NGDARSLLNALELA 221 (725)
T ss_pred hhhHhhccc-cceecCCCCHHHHHHHH----HHHHHHHHhhcCCc--ccCCCHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 556777785 47889999999999999 55566554433333 4678999999999987 44589999999987
Q ss_pred hhhhhccCCCCCceEEEEeccccccc---cCcccc-ccccchhhhcccCCC---Cc-------ceeccccCcchHHHHHH
Q psy11091 209 LLDSMYEVPGSDILMVHITEDTVLKN---TAPSYI-RGIVFLDEVDKIGAV---PG-------IHQLRDVGGEGVQQGML 274 (408)
Q Consensus 209 L~d~l~d~pg~~~~~V~Id~~~V~~~---~~p~~~-RGIvfldE~dkia~~---~~-------~~~tRDV~gedv~~~l~ 274 (408)
+... .......+.||.+.++.- ....+- .|....|.+..+-+. .. ..+.= -+|||...++.
T Consensus 222 ~~~~----~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml-~~Gedp~~I~R 296 (725)
T PRK13341 222 VEST----PPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMV-EAGEDPRFIFR 296 (725)
T ss_pred HHhc----ccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHH
Confidence 6321 112223455665554421 111122 245566666542221 00 22222 35999999999
Q ss_pred HHHHhh
Q psy11091 275 KVSALA 280 (408)
Q Consensus 275 kll~~a 280 (408)
+|+..|
T Consensus 297 rl~~~a 302 (725)
T PRK13341 297 RMLIAA 302 (725)
T ss_pred HHHHHH
Confidence 997665
No 45
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=86.40 E-value=0.27 Score=45.17 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
+++.|+.|++||||||.+... +|.-||.+++.-.+
T Consensus 88 ~l~~A~~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~ 122 (168)
T PF00158_consen 88 LLEQANGGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKF 122 (168)
T ss_dssp HHHHTTTSEEEEETGGGS-HH-------------HHHHHHHHHHHSEE
T ss_pred ceeeccceEEeecchhhhHHH-------------HHHHHHHHHhhchh
Confidence 789999999999999998643 67778888875444
No 46
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=86.35 E-value=3.7 Score=42.32 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCccccccCCc-eeecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||.. .|.+-||. .+|+..++ +..++++...+.. -...|+++|++.|.+..... -.|-|++++
T Consensus 289 f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~wpg--NvreL~~~~ 360 (463)
T TIGR01818 289 FREDLFHRLNVIRIHLPPLRERREDIPRLA----RHFLALAARELDV--EPKLLDPEALERLKQLRWPG--NVRQLENLC 360 (463)
T ss_pred cHHHHHHHhCcceecCCCcccchhhHHHHH----HHHHHHHHHHhCC--CCCCcCHHHHHHHHhCCCCC--hHHHHHHHH
Confidence 77788888876 77888888 78999988 7888887665422 12368999999999886533 358899999
Q ss_pred HHhhhh
Q psy11091 206 ESLLLD 211 (408)
Q Consensus 206 e~~L~d 211 (408)
++.+..
T Consensus 361 ~~~~~~ 366 (463)
T TIGR01818 361 RWLTVM 366 (463)
T ss_pred HHHHHh
Confidence 988753
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=86.22 E-value=1.8 Score=42.47 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
+.+.|..|+..+..|+..+.++|.+|+.. . ..-..+.+++++..+||+.+-
T Consensus 162 ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r---------~----a~~l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 162 LSSPLRDRFGIVLRLEFYSEEELAKIVKR---------S----ARILNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp TSHCCCTTSSEEEE----THHHHHHHHHH---------C----CHCTT-EE-HHHHHHHHHCTT
T ss_pred cchhHHhhcceecchhcCCHHHHHHHHHH---------H----HHHhCCCcCHHHHHHHHHhcC
Confidence 45778899999999999999999999921 1 113567889999999999864
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.07 E-value=2.9 Score=41.74 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+.+|+..++.|.+++.+++.+|+ ....+ . ..+.+++++++.||+.+-. -.|-+.+++++.
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il----~~~~~-------~--~~~~~~~~~~~~ia~~~~G---~pR~a~~~l~~~ 226 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIV----KRSAR-------I--LGVEIDEEGALEIARRSRG---TPRIANRLLRRV 226 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHH----HHHHH-------H--cCCCcCHHHHHHHHHHcCC---CchHHHHHHHHH
Confidence 445577799889999999999999999 22222 1 2456899999999987632 124455555443
No 49
>KOG0727|consensus
Probab=85.86 E-value=0.27 Score=49.63 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=35.7
Q ss_pred ccccCcchHHHHH----------HHHHHhhccceEEeeccccccccCC-CccccCCCccccccccccccc
Q psy11091 261 LRDVGGEGVQQGM----------LKVSALAAFGIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 261 tRDV~gedv~~~l----------~kll~~a~~Givfideidki~~~~~-~~~~~dvs~egvQ~~ll~~~e 319 (408)
.|=||-|=||.-| .+|...-.-.||||||||.||.+.= ...+. ..-|||=||-++.
T Consensus 218 irvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga---drevqril~elln 284 (408)
T KOG0727|consen 218 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA---DREVQRILIELLN 284 (408)
T ss_pred eeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc---cHHHHHHHHHHHH
Confidence 4566666565433 3333334678999999999998742 22222 3459998887764
No 50
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=84.72 E-value=3.7 Score=44.85 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=55.3
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|++++.-||.. .|.+-||.+ +|+..++ +..++++.+.+ +..+.|+++|++.|.+.....+. |-|+.+|
T Consensus 477 f~~dL~~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~~~---~~~~~~s~~a~~~L~~y~WPGNv--reL~~~l 547 (638)
T PRK11388 477 FSRQLYYALHAFEITIPPLRMRREDIPALV----NNKLRSLEKRF---STRLKIDDDALARLVSYRWPGND--FELRSVI 547 (638)
T ss_pred ChHHHhhhhceeEEeCCChhhhhhHHHHHH----HHHHHHHHHHh---CCCCCcCHHHHHHHHcCCCCChH--HHHHHHH
Confidence 77788778765 456667764 6788888 77788776544 33467999999999998776665 9999999
Q ss_pred HHhhh
Q psy11091 206 ESLLL 210 (408)
Q Consensus 206 e~~L~ 210 (408)
++.+.
T Consensus 548 ~~~~~ 552 (638)
T PRK11388 548 ENLAL 552 (638)
T ss_pred HHHHH
Confidence 98765
No 51
>KOG0728|consensus
Probab=84.00 E-value=0.59 Score=47.20 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=26.2
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
.-.|||+||||.|.+....++++ +..-|||-+|-++.
T Consensus 240 apsiifmdeidsigs~r~e~~~g--gdsevqrtmlelln 276 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSG--GDSEVQRTMLELLN 276 (404)
T ss_pred CCceEeeecccccccccccCCCC--ccHHHHHHHHHHHH
Confidence 67899999999998763321111 34569999887764
No 52
>PRK14700 recombination factor protein RarA; Provisional
Probab=83.66 E-value=1.1 Score=45.37 Aligned_cols=133 Identities=12% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
-+.|-++.|. .++.|++|+.+++.+|| ..-+.... .+. ...+.++++|+++||+.+- -=||..=..+|-
T Consensus 22 ~vn~ALlSR~-~v~~l~~L~~~di~~il----~ral~~~~-~~~--~~~~~i~~~al~~ia~~a~---GDaR~aLN~LE~ 90 (300)
T PRK14700 22 YLNDALVSRL-FILRLKRLSLVATQKLI----EKALSQDE-VLA--KHKFKIDDGLYNAMHNYNE---GDCRKILNLLER 90 (300)
T ss_pred eecHhhhhhh-heeeecCCCHHHHHHHH----HHHHHhhh-ccC--CcCCCcCHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 3678888888 68899999999999999 33344321 122 2357899999999999863 235555556665
Q ss_pred hhhhhhccCCCCCceEEEEeccccccc---cCcccc-ccccchhhhcccCCCCcceeccc------------cCcchHHH
Q psy11091 208 LLLDSMYEVPGSDILMVHITEDTVLKN---TAPSYI-RGIVFLDEVDKIGAVPGIHQLRD------------VGGEGVQQ 271 (408)
Q Consensus 208 ~L~d~l~d~pg~~~~~V~Id~~~V~~~---~~p~~~-RGIvfldE~dkia~~~~~~~tRD------------V~gedv~~ 271 (408)
.+.. .++.+. +.||.+.|+.- ....+- .|.-+-|-+..+-+ ..+.-| -||||..-
T Consensus 91 a~~~----~~~~~~--~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~K---SiRGSDpDAAlYyLArml~~GEDp~~ 161 (300)
T PRK14700 91 MFLI----STRGDE--IYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHK---SVRGTDPDAAIFWLSVMLDNGVDPLV 161 (300)
T ss_pred HHhh----ccccCC--CccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHH---HhhcCCccHHHHHHHHHHHcCCCHHH
Confidence 4421 111111 34777776532 111111 23334443333111 112222 25888888
Q ss_pred HHHHHHHhh
Q psy11091 272 GMLKVSALA 280 (408)
Q Consensus 272 ~l~kll~~a 280 (408)
+..+|+.-|
T Consensus 162 IaRRLii~A 170 (300)
T PRK14700 162 IARRMLCIA 170 (300)
T ss_pred HHHHHHHHH
Confidence 888886554
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.33 E-value=1.7 Score=49.33 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=44.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|+ .++.|++|+.+++.+.| ..+ ++.+|| .+++++++.|++.+-. ..|...+++++.
T Consensus 162 Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L----~~I-------l~~EgI--~id~eAL~lIA~~A~G---smRdALsLLdQA 224 (830)
T PRK07003 162 IPVTVLSRC-LQFNLKQMPAGHIVSHL----ERI-------LGEERI--AFEPQALRLLARAAQG---SMRDALSLTDQA 224 (830)
T ss_pred ccchhhhhe-EEEecCCcCHHHHHHHH----HHH-------HHHcCC--CCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 567788888 68899999999998888 222 333454 5799999999998631 234444444443
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 225 i 225 (830)
T PRK07003 225 I 225 (830)
T ss_pred H
Confidence 3
No 54
>PRK09862 putative ATP-dependent protease; Provisional
Probab=83.08 E-value=4 Score=44.20 Aligned_cols=88 Identities=9% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCccccccCCceeecCCCCHHHHHhhc--ccchHHHHHHH---HHHh-ccC---Cc---------eEEeCHHHHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRIL--TEPKNAMIQQY---QILF-TMD---KV---------DLTFSPEALQAIARL 190 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~IL--tePk~~lLkq~---~~~f-~~~---gI---------~L~ft~~Al~~IA~~ 190 (408)
+.+-|+.|||..|...+++.++|.+-. .|+...+.++. ++.. +.+ +- ...+++++.+.+.+.
T Consensus 371 ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~ 450 (506)
T PRK09862 371 LSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEET 450 (506)
T ss_pred CCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999999877664411 11111111111 1110 000 10 134566777766666
Q ss_pred hhccCCcchhHHHHHHHhhhhhhccCCC
Q psy11091 191 ALEKKTGARGLRAIMESLLLDSMYEVPG 218 (408)
Q Consensus 191 a~d~~~GAR~LrriIe~~L~d~l~d~pg 218 (408)
..+.+..+|+..+++. +...++|+.+
T Consensus 451 ~~~~~lS~Ra~~rlLr--vARTiADL~g 476 (506)
T PRK09862 451 LIHLGLSIRAWQRLLK--VARTIADIDQ 476 (506)
T ss_pred HHHcCCCHHHHHHHHH--HHHHHHHHcC
Confidence 6666777888777764 3344555554
No 55
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=82.35 E-value=2.3 Score=46.75 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCccccccCC---ceeecCC---CCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 129 MIPEFVGRFP---ILVPFHS---LNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 129 f~PEFlgRLd---~IV~F~p---Ls~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
|.|+|..||+ ..+.|+. .+.+...+++ .- + .+.++..|....|+++|++.|.+.+-
T Consensus 283 l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~----~~-i---~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 283 MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLV----QF-V---AQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHH----HH-H---HHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 6788888888 6566554 4555555554 22 2 22233344444788888888887543
No 56
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.22 E-value=0.58 Score=40.16 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=29.2
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCcc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGY 331 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~ 331 (408)
+.+|+|||||++.. ..||..|+++++...+..|...+.
T Consensus 65 ~~~il~lDEin~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~ 102 (139)
T PF07728_consen 65 KGGILVLDEINRAP-------------PEVLESLLSLLEERRIQLPEGGEE 102 (139)
T ss_dssp EEEEEEESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSE
T ss_pred ceeEEEECCcccCC-------------HHHHHHHHHHHhhCcccccCCCcE
Confidence 78999999998865 238889999999999988765443
No 57
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=81.57 E-value=5.8 Score=41.13 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCccccccCC-ceeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCce-EEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 129 MIPEFVGRFP-ILVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVD-LTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 129 f~PEFlgRLd-~IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~-L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
|+++|..||. ..|.+-||.+ +|+..++ +..++++...+ |.. ..++++|++.|.+..+..+ -|-|+++
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~----~~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~wpgN--v~eL~~~ 363 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAREL---GVEAKLLHPETEAALTRLAWPGN--VRQLENT 363 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHH----HHHHHHHHHHc---CCCCCCcCHHHHHHHHhCCCCCh--HHHHHHH
Confidence 7888888985 4666667764 6787787 77787776643 333 4689999999988777544 6889999
Q ss_pred HHHhhhh
Q psy11091 205 MESLLLD 211 (408)
Q Consensus 205 Ie~~L~d 211 (408)
|++.+..
T Consensus 364 i~~~~~~ 370 (469)
T PRK10923 364 CRWLTVM 370 (469)
T ss_pred HHHHHHh
Confidence 9998763
No 58
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=81.44 E-value=6.6 Score=39.57 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCccccccCC-ceeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFP-ILVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd-~IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||. ..|.+-||.+ +|+..++ +..++++.+.+.. .+...|+++|++.|.+.....+ .|-|++++
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~~~~~-~~~~~~s~~al~~L~~y~WPGN--vrEL~~vl 233 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMA----EHFAIQMCRELGL-PLFPGFTERARETLLNYRWPGN--IRELKNVV 233 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHH----HHHHHHHHHHhCC-CCCCCCCHHHHHHHHhCCCCcH--HHHHHHHH
Confidence 7888888985 4777888874 6888888 6777777655422 2235799999999998877644 58899999
Q ss_pred HHhhhh
Q psy11091 206 ESLLLD 211 (408)
Q Consensus 206 e~~L~d 211 (408)
++.+..
T Consensus 234 ~~a~~~ 239 (326)
T PRK11608 234 ERSVYR 239 (326)
T ss_pred HHHHHh
Confidence 988763
No 59
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=81.34 E-value=0.47 Score=48.00 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCC
Q psy11091 277 SALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPN 328 (408)
Q Consensus 277 l~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~ 328 (408)
+..|..||+||||+||+-... +..|+-.||-.+|++.+.
T Consensus 117 lvlad~GiccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~ka 155 (331)
T PF00493_consen 117 LVLADGGICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKA 155 (331)
T ss_dssp HHHCTTSEEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTS
T ss_pred hhcccCceeeecccccccchH-------------HHHHHHHHHcCeeccchh
Confidence 455799999999999987532 337888888888888653
No 60
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=80.62 E-value=8.5 Score=41.12 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCccccccCCce-eecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPIL-VPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~I-V~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||.++ |.+-||.+ +|+..++ +..++++...+... .+.|+++|++.|.+.....+ .|-|+++|
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~----~~fl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPGN--vrEL~~~i 413 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLA----GYFLEQNRARLGLR--SLRLSPAAQAALLAYDWPGN--VRELEHVI 413 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHH----HHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCCc--HHHHHHHH
Confidence 888888888765 67777774 6777777 67788876654332 35799999999988766544 68899999
Q ss_pred HHhhhhh
Q psy11091 206 ESLLLDS 212 (408)
Q Consensus 206 e~~L~d~ 212 (408)
++.+...
T Consensus 414 ~ra~~~~ 420 (509)
T PRK05022 414 SRAALLA 420 (509)
T ss_pred HHHHHhc
Confidence 9887644
No 61
>KOG0740|consensus
Probab=80.18 E-value=1.2 Score=47.27 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=36.9
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCc-----cccccccccccccceeeeC
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGG-----EGVQQGMLKVSTSYLFYRY 326 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~-----egvQ~~ll~~~eg~~v~~~ 326 (408)
.++ ||. |-.+..|...| |-+||||||||++..+... +..+.|+ -=+|.+.+..--.+.|-+-
T Consensus 225 K~~-Ge~-eK~vralf~vAr~~qPsvifidEidslls~Rs~-~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 225 KYV-GES-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred hcc-ChH-HHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC-cccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 466 766 55554454444 9999999999999876421 2234443 2455555555444444443
No 62
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=1 Score=47.40 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccc----cceeeeCCCCcceeeecC
Q psy11091 268 GVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST----SYLFYRYPNTGYLWYRYP 337 (408)
Q Consensus 268 dv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e----g~~v~~~~~~~~~~~~~~ 337 (408)
..+..+.++.+.| +-.||||||||+|+...+.. .+.+++=+..-||-.+. ...|.+..-+++-+.-+|
T Consensus 319 esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~--~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 319 ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS--EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC--CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence 4566677777766 58999999999999875431 12222223333444332 233455555555555444
No 63
>KOG0733|consensus
Probab=79.13 E-value=1.3 Score=49.36 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=38.2
Q ss_pred eeccccCcchHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccc
Q psy11091 259 HQLRDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQ 312 (408)
Q Consensus 259 ~~tRDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~ 312 (408)
+..-.|||| -|.-|.+|.+.| .--||||||||-|+.+... .+++..+.=|-|
T Consensus 258 eivSGvSGE-SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQ 312 (802)
T KOG0733|consen 258 EIVSGVSGE-SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQ 312 (802)
T ss_pred hhhcccCcc-cHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHH
Confidence 345678885 577889999888 6689999999999987543 345666555554
No 64
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=79.01 E-value=6.9 Score=43.16 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.1
Q ss_pred eEEeCHHHHHHHHHHhhccCC-cchhHHHHHH
Q psy11091 176 DLTFSPEALQAIARLALEKKT-GARGLRAIME 206 (408)
Q Consensus 176 ~L~ft~~Al~~IA~~a~d~~~-GAR~LrriIe 206 (408)
.+.++++++++|++.+.+-+. |.|....+++
T Consensus 247 ~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r 278 (633)
T TIGR02442 247 SVRISDSLIRFISELCIEFGVDGHRADIVMAR 278 (633)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 356688999999998887666 6666654443
No 65
>KOG0739|consensus
Probab=78.45 E-value=1.8 Score=44.66 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=21.7
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
|...-+|.|.| .-.||||||||.+|.+.+
T Consensus 211 EkLVknLFemARe~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhccCCC
Confidence 44555666666 678999999999997643
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=78.15 E-value=1.1 Score=47.33 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=33.8
Q ss_pred cccCcchHHHHHHHHHHhh--------ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 262 RDVGGEGVQQGMLKVSALA--------AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a--------~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+++ | +-+..|.++...| +.-|+||||||+++.+.+. +...|...=|..-||-++.+
T Consensus 187 k~v-G-EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~D~ 250 (413)
T PLN00020 187 ENA-G-EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIADN 250 (413)
T ss_pred CcC-C-cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHhcC
Confidence 455 5 3466677776655 3679999999999976432 12233333333456665544
No 67
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=77.75 E-value=6.9 Score=42.93 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=18.8
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCC
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNS 36 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg 36 (408)
...+|..||..||-..|+|...|.
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~ 120 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGI 120 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCC
Confidence 357899999999988888854444
No 68
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=77.68 E-value=6 Score=44.73 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|+- ++.|.+|+.+++.++| .. .++..| +.++++|++.||+.+- -..|.+.+.++++
T Consensus 161 Ll~TI~SRcq-~ieF~~L~~eeI~~~L----~~-------il~keg--I~id~eAl~~LA~lS~---GslR~AlslLekl 223 (725)
T PRK07133 161 IPLTILSRVQ-RFNFRRISEDEIVSRL----EF-------ILEKEN--ISYEKNALKLIAKLSS---GSLRDALSIAEQV 223 (725)
T ss_pred hhHHHHhhce-eEEccCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3455677774 7899999999999888 22 233345 5678999999998765 3356666666665
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 224 ~ 224 (725)
T PRK07133 224 S 224 (725)
T ss_pred H
Confidence 3
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.51 E-value=2.9 Score=40.00 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=50.4
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|.+..|+- .++.+++++.+++.+||. +++..+| +.++++++++|++..- --.|.|..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~--~~l~~~v~~~L~~~~~---~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQ-----------LRARLRG--FELPEDVGRFLLKRLD---REMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhhc---CCHHHHHHHHH
Confidence 4689999997 799999999999999981 2223335 6799999999999863 34677878888
Q ss_pred Hhh
Q psy11091 207 SLL 209 (408)
Q Consensus 207 ~~L 209 (408)
++.
T Consensus 212 ~l~ 214 (235)
T PRK08084 212 QLD 214 (235)
T ss_pred HHH
Confidence 753
No 70
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.34 E-value=2.2 Score=40.54 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=47.2
Q ss_pred ccchhhhhcCCCccccccCCc--eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCC
Q psy11091 119 VEARDLIDFGMIPEFVGRFPI--LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT 196 (408)
Q Consensus 119 v~~eDLik~Gf~PEFlgRLd~--IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~ 196 (408)
..|.+|. ++.|.+..||.- ++.+++++.++..+|| +++++.+|+. +++++.++|++.. .-
T Consensus 139 ~~P~~l~--~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il-----------~~~a~~~~~~--l~~~v~~~l~~~~---~~ 200 (219)
T PF00308_consen 139 RPPSELS--GLLPDLRSRLSWGLVVELQPPDDEDRRRIL-----------QKKAKERGIE--LPEEVIEYLARRF---RR 200 (219)
T ss_dssp S-TTTTT--TS-HHHHHHHHCSEEEEE----HHHHHHHH-----------HHHHHHTT----S-HHHHHHHHHHT---TS
T ss_pred CCCcccc--ccChhhhhhHhhcchhhcCCCCHHHHHHHH-----------HHHHHHhCCC--CcHHHHHHHHHhh---cC
Confidence 4455543 477888899877 8899999999999999 3344455655 9999999999985 23
Q ss_pred cchhHHHHHHHhh
Q psy11091 197 GARGLRAIMESLL 209 (408)
Q Consensus 197 GAR~LrriIe~~L 209 (408)
-.|.|..+|+++.
T Consensus 201 ~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 201 DVRELEGALNRLD 213 (219)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5677777777664
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.88 E-value=4.6 Score=41.85 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=52.3
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.+.|.++.|+ .++.|.+|+.+++..++ ...+.+.. .++ +.+++++++.|++.+ .--+|.+..+++
T Consensus 133 ~~l~~aL~SR~-~~~~~~~ls~e~i~~lL----~~~l~~~~-----~~~-i~i~~~al~~l~~~s---~Gd~R~aln~Le 198 (413)
T PRK13342 133 FEVNPALLSRA-QVFELKPLSEEDIEQLL----KRALEDKE-----RGL-VELDDEALDALARLA---NGDARRALNLLE 198 (413)
T ss_pred hhccHHHhccc-eeeEeCCCCHHHHHHHH----HHHHHHhh-----cCC-CCCCHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 34678899999 78899999999999999 34444331 244 588999999999876 334677777777
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
....
T Consensus 199 ~~~~ 202 (413)
T PRK13342 199 LAAL 202 (413)
T ss_pred HHHH
Confidence 7653
No 72
>KOG2004|consensus
Probab=76.73 E-value=4.2 Score=46.08 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=22.2
Q ss_pred hhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCC
Q psy11091 18 WKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGA 59 (408)
Q Consensus 18 QaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GA 59 (408)
-|||-+|+ |+++..-..+==.|.+|-|.+||||+-.
T Consensus 527 sALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 527 SALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred HHHHHhcC------hhhccchhhhccccccchhheEEEEecc
Confidence 46776665 4443311111124789999999999865
No 73
>PRK15115 response regulator GlrR; Provisional
Probab=76.73 E-value=8.1 Score=39.69 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|++++..||.. .|.+-||.+ +|+..++ +..++++...... ....++++|++.|.+..... --|-|+++|
T Consensus 289 f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~Wpg--NvreL~~~i 360 (444)
T PRK15115 289 FREDLYYRLNVVSLKIPALAERTEDIPLLA----NHLLRQAAERHKP--FVRAFSTDAMKRLMTASWPG--NVRQLVNVI 360 (444)
T ss_pred ccHHHHHhhceeeecCCChHhccccHHHHH----HHHHHHHHHHhCC--CCCCcCHHHHHHHHhCCCCC--hHHHHHHHH
Confidence 55666666554 334444543 6777777 6677776554321 23368999999999776543 368899999
Q ss_pred HHhhh
Q psy11091 206 ESLLL 210 (408)
Q Consensus 206 e~~L~ 210 (408)
++.+.
T Consensus 361 ~~~~~ 365 (444)
T PRK15115 361 EQCVA 365 (444)
T ss_pred HHHHH
Confidence 98765
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=76.46 E-value=1.4 Score=45.48 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccccccccc
Q psy11091 271 QGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVS 318 (408)
Q Consensus 271 ~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~ 318 (408)
..+..+.+.| +.+||||||||.|+......+ +.+..-+|+-|+.++
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL 259 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLL 259 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCC--CCccHHHHHHHHHHH
Confidence 3444455544 568999999999987643211 111234677666665
No 75
>smart00350 MCM minichromosome maintenance proteins.
Probab=76.33 E-value=0.72 Score=49.30 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCC
Q psy11091 277 SALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327 (408)
Q Consensus 277 l~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~ 327 (408)
+..|+.|++||||||++... .|..|+..||...|++.+
T Consensus 296 l~~A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k 333 (509)
T smart00350 296 LVLADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAK 333 (509)
T ss_pred EEecCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEe
Confidence 55689999999999998642 477888888887776654
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.29 E-value=0.99 Score=50.93 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=39.2
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
.-|-|..|+. .|.+.+++.++..+|| ..+...|.. + -.+.++++|++.+++.+
T Consensus 333 ~D~AL~rRFq-~I~v~ePs~~~~~~IL----~~~~~~ye~----~-h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 333 KDRALARRFQ-KIDITEPSIEETVQII----NGLKPKYEA----H-HDVRYTAKAVRAAVELA 385 (758)
T ss_pred ccHHHHhhCc-EEEeCCCCHHHHHHHH----HHHHHHhhh----c-cCCCcCHHHHHHHHHHh
Confidence 4577899996 7999999999999999 444444433 2 25677888888776654
No 77
>KOG0741|consensus
Probab=76.25 E-value=0.84 Score=50.00 Aligned_cols=64 Identities=28% Similarity=0.369 Sum_probs=42.1
Q ss_pred cccCccccccccchhhhcccCCCCcceeccccCcchHHHHHHHHHHhh-----------ccceEEeeccccccccCCCc-
Q psy11091 233 KNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALA-----------AFGIVFLDEVDKIGAVPGIH- 300 (408)
Q Consensus 233 ~~~~p~~~RGIvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~a-----------~~Givfideidki~~~~~~~- 300 (408)
...+|++++|+--|+ ++| || -|+-+.||.+.| .-=||+.||||-||+..++.
T Consensus 281 NArePKIVNGPeIL~--------------KYV-Ge-SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~ 344 (744)
T KOG0741|consen 281 NAREPKIVNGPEILN--------------KYV-GE-SEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA 344 (744)
T ss_pred cCCCCcccCcHHHHH--------------Hhh-cc-cHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC
Confidence 337899999998888 677 53 355567776555 33488889999999875542
Q ss_pred cccCCCcccccc
Q psy11091 301 QLRDVGGEGVQQ 312 (408)
Q Consensus 301 ~~~dvs~egvQ~ 312 (408)
++.+|...=|-|
T Consensus 345 g~TGVhD~VVNQ 356 (744)
T KOG0741|consen 345 GSTGVHDTVVNQ 356 (744)
T ss_pred CCCCccHHHHHH
Confidence 234444433333
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.95 E-value=6.5 Score=45.57 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=42.4
Q ss_pred ccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
|-++.|+ .++.|++|+.+++.+.| ...++ .++ +.|+++|++.||+.+ +-..|..-+++++.+
T Consensus 164 ~TIlSRC-q~f~fkpLs~eEI~~~L----~~il~-------~Eg--I~~edeAL~lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 164 VTVLSRC-LQFNLKSLTQDEIGTQL----NHILT-------QEQ--LPFEAEALTLLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHhh-eEEeCCCCCHHHHHHHH----HHHHH-------HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 3344455 68899999999998888 22222 234 578999999999885 333566666666555
No 79
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=75.88 E-value=11 Score=40.60 Aligned_cols=75 Identities=8% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|++++..||.. .+.+-||.+ +|+..++ +..++++.+.... -...++++|++.|.+..... -.|-|+++|
T Consensus 359 f~~dL~~rL~~~~i~lPpLreR~~Di~~L~----~~fl~~~~~~~g~--~~~~ls~~a~~~L~~y~WPG--NvreL~nvl 430 (520)
T PRK10820 359 FREDLYYRLNVLTLNLPPLRDRPQDIMPLT----ELFVARFADEQGV--PRPKLAADLNTVLTRYGWPG--NVRQLKNAI 430 (520)
T ss_pred ccHHHHhhcCeeEEeCCCcccChhHHHHHH----HHHHHHHHHHcCC--CCCCcCHHHHHHHhcCCCCC--HHHHHHHHH
Confidence 78888888864 677778875 5777777 6778877664322 13479999999998665533 468898888
Q ss_pred HHhhhh
Q psy11091 206 ESLLLD 211 (408)
Q Consensus 206 e~~L~d 211 (408)
++.+..
T Consensus 431 ~~a~~~ 436 (520)
T PRK10820 431 YRALTQ 436 (520)
T ss_pred HHHHHh
Confidence 888763
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.41 E-value=6.5 Score=43.29 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-+..|. .++.|++++.+++.+.| +..++..| +.++++++..|++.+- -..|..-++++++
T Consensus 161 ll~TI~SRc-~~~~F~~l~~~~i~~~L-----------~~i~~~eg--i~i~~~al~~Ia~~s~---GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRT-HHYPFRLLPPRTMRALI-----------ARICEQEG--VVVDDAVYPLVIRAGG---GSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhc-eEEEeeCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 334455553 47889999999888777 22233445 4578999999988653 4477777778776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 224 ~~ 225 (584)
T PRK14952 224 LA 225 (584)
T ss_pred Hh
Confidence 53
No 81
>KOG0652|consensus
Probab=74.08 E-value=1.4 Score=44.85 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=26.7
Q ss_pred ccceEEeeccccccccCCCccccCCC-ccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVG-GEGVQQGMLKVST 319 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs-~egvQ~~ll~~~e 319 (408)
.--||||||+|-|..+.-. .+.+ ..-|||-+|-++.
T Consensus 264 aP~IIFIDElDAIGtKRfD---Sek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFD---SEKAGDREVQRTMLELLN 300 (424)
T ss_pred CCeEEEEechhhhcccccc---ccccccHHHHHHHHHHHH
Confidence 6789999999999887432 1333 3579999988764
No 82
>PRK09087 hypothetical protein; Validated
Probab=73.81 E-value=4 Score=39.09 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=41.0
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
+.|.+..|+. .++.+++++.+++.+|+ . +.++..+ +.++++++++||+..-
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL----~-------~~~~~~~--~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVI----F-------KLFADRQ--LYVDPHVVYYLVSRME 186 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHH----H-------HHHHHcC--CCCCHHHHHHHHHHhh
Confidence 3688999996 79999999999999999 2 2223334 6799999999999875
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.69 E-value=10 Score=40.97 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|+ .++.|.+|+.+++.+.| .. .++..| +.++++|++.||+.+- -..|..-.+++++
T Consensus 164 I~~TI~SRC-q~~~f~~ls~~~i~~~L----~~-------i~~~Eg--i~~e~eAL~~Ia~~S~---Gd~RdAL~lLeq~ 226 (484)
T PRK14956 164 IPETILSRC-QDFIFKKVPLSVLQDYS----EK-------LCKIEN--VQYDQEGLFWIAKKGD---GSVRDMLSFMEQA 226 (484)
T ss_pred ccHHHHhhh-heeeecCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence 445566666 36789999999888777 22 223345 5689999999998864 4466666777776
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 227 i 227 (484)
T PRK14956 227 I 227 (484)
T ss_pred H
Confidence 5
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=73.69 E-value=6.1 Score=38.49 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
+.|.+..|+..++.|++++.+++.+|+ ....+ ..+ +.++++++++|++.+-. -+|-+-+++++
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il----~~~~~-------~~~--~~~~~~al~~ia~~~~G---~pR~~~~ll~~ 204 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIV----SRSAG-------LLN--VEIEPEAALEIARRSRG---TPRIANRLLRR 204 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHH----HHHHH-------HhC--CCcCHHHHHHHHHHhCC---CcchHHHHHHH
Confidence 456688999999999999999999999 22222 123 46899999999987432 12444445544
No 85
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.63 E-value=1.8 Score=45.83 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHhh---ccceEEeeccccccccCCCc-cccCCCcccccccccccccc
Q psy11091 272 GMLKVSALA---AFGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 272 ~l~kll~~a---~~Givfideidki~~~~~~~-~~~dvs~egvQ~~ll~~~eg 320 (408)
.+.++.+.| +.+||||||||.|+.+.+.. ++.+-..+.+...||.-++|
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 344555555 44899999999999764321 11122233444556655543
No 86
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=72.58 E-value=1.8 Score=42.08 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=28.3
Q ss_pred hccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCC
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPN 328 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~ 328 (408)
++.|+++|||||+.-. -+|..||.++|.-.+..|..
T Consensus 104 ~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 104 REGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HcCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCC
Confidence 3778999999998432 26889999999888777653
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.55 E-value=3.7 Score=46.10 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=38.1
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
.|=++.|+ .++.|++|+.+++.+.| ... +..+| +.+++++++.|++.+- -..|...+++++.
T Consensus 168 lpTIrSRC-q~f~f~~ls~eei~~~L----~~I-------l~~Eg--i~~d~eAL~~IA~~A~---Gs~RdALsLLdQa 229 (700)
T PRK12323 168 PVTVLSRC-LQFNLKQMPPGHIVSHL----DAI-------LGEEG--IAHEVNALRLLAQAAQ---GSMRDALSLTDQA 229 (700)
T ss_pred hhHHHHHH-HhcccCCCChHHHHHHH----HHH-------HHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 34455555 47789999998888877 222 22335 4578999999988742 2334444444443
No 88
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=72.11 E-value=9.4 Score=39.14 Aligned_cols=22 Identities=14% Similarity=-0.148 Sum_probs=17.1
Q ss_pred hhHhhhhhhhhcCCeEeeCCCC
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKN 35 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~g 35 (408)
..+|+.||..|+...+++...|
T Consensus 145 ~~~Q~~Ll~~l~~g~~~v~r~G 166 (337)
T TIGR02030 145 DHLVDVLLDVAASGWNVVEREG 166 (337)
T ss_pred HHHHHHHHHHHHhCCeEEEECC
Confidence 5789999999987777775444
No 89
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=71.51 E-value=1.6 Score=47.20 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=29.1
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceee
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFY 324 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~ 324 (408)
++++|+.|++||||||++... +|..||+++|--.+.
T Consensus 170 ~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 170 AVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVF 205 (531)
T ss_pred hhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeee
Confidence 677899999999999998642 677899988865554
No 90
>smart00350 MCM minichromosome maintenance proteins.
Probab=71.40 E-value=11 Score=40.30 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=17.4
Q ss_pred hhHhhhhhhhhcCCeEeeCCCC
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKN 35 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~g 35 (408)
.-.|++||..||...|++...|
T Consensus 314 ~~~q~~L~e~me~~~i~i~k~G 335 (509)
T smart00350 314 DSDRTAIHEAMEQQTISIAKAG 335 (509)
T ss_pred HHHHHHHHHHHhcCEEEEEeCC
Confidence 3579999999999999886433
No 91
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=71.25 E-value=1.1 Score=49.27 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=32.8
Q ss_pred cccCcchHHHHHH--------HHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 262 RDVGGEGVQQGML--------KVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 262 RDV~gedv~~~l~--------kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+=+|+.|++..+. -+|+.|+.||+|||||+++... +|..||..+|--
T Consensus 99 ~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g 153 (633)
T TIGR02442 99 RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-------------LVDVLLDAAAMG 153 (633)
T ss_pred HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------------HHHHHHHHHhcC
Confidence 3456666665542 2577899999999999998743 466777777533
No 92
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=71.24 E-value=24 Score=36.22 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCccccccCCc-eeecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||.. .|.+-||. .+|+..++ +..++++....... ...++++|++.|.+.... --.|-|+++|
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wp--gNvreL~~~i 365 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLA----NAFLERFARELKRK--TKGFTDDALRALEAHAWP--GNVRELENKV 365 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHH----HHHHHHHHHHhCCC--CCCCCHHHHHHHHhCCCC--ChHHHHHHHH
Confidence 66666666653 34455554 35777777 67777776653221 256899999999887663 3479999999
Q ss_pred HHhhh
Q psy11091 206 ESLLL 210 (408)
Q Consensus 206 e~~L~ 210 (408)
++.+.
T Consensus 366 ~~a~~ 370 (445)
T TIGR02915 366 KRAVI 370 (445)
T ss_pred HHHHH
Confidence 98875
No 93
>CHL00195 ycf46 Ycf46; Provisional
Probab=70.94 E-value=2.7 Score=45.22 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHHH---hhccceEEeecccccccc
Q psy11091 270 QQGMLKVSA---LAAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 270 ~~~l~kll~---~a~~Givfideidki~~~ 296 (408)
+.-+.+++. ..+..|||||||||+...
T Consensus 304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~~ 333 (489)
T CHL00195 304 ESRMRQMIRIAEALSPCILWIDEIDKAFSN 333 (489)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhhhcc
Confidence 334444444 347899999999999865
No 94
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=70.68 E-value=13 Score=40.98 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCC-cchhHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKT-GARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~-GAR~LrriIe 206 (408)
+.+-++.||+..|.+..++..++..-... ...|...++++. .+.++++.+++|++.+..-+. |.|+...++.
T Consensus 152 L~~~lLDRf~l~v~v~~~~~~~~~~~~~~--~~~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 152 APAALADRLAFHLDLDGLALRDAREIPID--ADDIAAARARLP----AVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred CCHHhHhheEEEEEcCCCChHHhcccCCC--HHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 56669999999999999998877542211 234555666663 467799999999998887776 7787765554
No 95
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=69.44 E-value=1.2 Score=51.13 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=31.4
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCC
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNT 329 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~ 329 (408)
.|+.|..|++|||||||+... .|..||..||..+|++.+.+
T Consensus 552 aLvlAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 552 AVVLANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred cEEEcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 366789999999999998532 56788888888877655533
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=69.10 E-value=6.3 Score=36.82 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=49.2
Q ss_pred cCCCccccccC--CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 127 FGMIPEFVGRF--PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 127 ~Gf~PEFlgRL--d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
..+.+++..|+ ...+.+.||++++...++. +. +...| +.++++++++|++. -.--.|-|+.+
T Consensus 136 ~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~--------~~---~~~~~--v~l~~~al~~L~~~---~~gn~~~l~~~ 199 (227)
T PRK08903 136 LPLREDLRTRLGWGLVYELKPLSDADKIAALK--------AA---AAERG--LQLADEVPDYLLTH---FRRDMPSLMAL 199 (227)
T ss_pred CCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH--------HH---HHHcC--CCCCHHHHHHHHHh---ccCCHHHHHHH
Confidence 34678888899 4699999999988777662 22 22334 67899999999983 33346788888
Q ss_pred HHHhhh
Q psy11091 205 MESLLL 210 (408)
Q Consensus 205 Ie~~L~ 210 (408)
++++-.
T Consensus 200 l~~l~~ 205 (227)
T PRK08903 200 LDALDR 205 (227)
T ss_pred HHHHHH
Confidence 888543
No 97
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=68.88 E-value=1.6 Score=47.00 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCC
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~ 327 (408)
.++.|+.|++|||||+++.. .+|.-|+..+|.-.|....
T Consensus 290 ~i~lA~~GvLfLDEi~e~~~-------------~~~~~L~~~LE~~~v~i~r 328 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFKR-------------SVLDALREPIEDGSISISR 328 (499)
T ss_pred hhhccCCCeEecCChhhCCH-------------HHHHHHHHHHHcCcEEEEe
Confidence 46788999999999997643 4777888888876665544
No 98
>PRK09862 putative ATP-dependent protease; Provisional
Probab=68.77 E-value=1.8 Score=46.71 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=37.7
Q ss_pred eeccccCcchHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCC
Q psy11091 259 HQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNT 329 (408)
Q Consensus 259 ~~tRDV~gedv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~ 329 (408)
+...=+||..+-+. -+++.|+.|++|||||+.+-. .+|..|+..+|.-.|.+....
T Consensus 274 s~~~l~GGg~~~~p--G~l~~A~gGvLfLDEi~e~~~-------------~~~~~L~~~LE~g~v~I~r~g 329 (506)
T PRK09862 274 SLTAMVGGGAIPGP--GEISLAHNGVLFLDELPEFER-------------RTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred hHHHHhCCCceehh--hHhhhccCCEEecCCchhCCH-------------HHHHHHHHHHHcCcEEEecCC
Confidence 33445666443222 258889999999999977432 478889988877777655544
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=68.53 E-value=7.4 Score=37.28 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|.+..|+- .++.+++++.+++.+|+. . ++...| +.++++++++|++..- --+|.|..+++
T Consensus 147 ~~~~L~SRl~~gl~~~l~~~~~e~~~~il~----~-------ka~~~~--~~l~~ev~~~L~~~~~---~d~r~l~~~l~ 210 (234)
T PRK05642 147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQ----L-------RASRRG--LHLTDEVGHFILTRGT---RSMSALFDLLE 210 (234)
T ss_pred cCccHHHHHhcCeeeecCCCCHHHHHHHHH----H-------HHHHcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4699999984 677789999999999992 1 122234 6789999999999753 34677777777
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
++..
T Consensus 211 ~l~~ 214 (234)
T PRK05642 211 RLDQ 214 (234)
T ss_pred HHHH
Confidence 7754
No 100
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.48 E-value=3.3 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.6
Q ss_pred ccCCceeecCCCCHHHHHhhc
Q psy11091 135 GRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 135 gRLd~IV~F~pLs~e~L~~IL 155 (408)
+|++..+.|...+.++..+|+
T Consensus 335 gRfd~~i~i~~P~~~~R~~Il 355 (733)
T TIGR01243 335 GRFDREIVIRVPDKRARKEIL 355 (733)
T ss_pred hhccEEEEeCCcCHHHHHHHH
Confidence 589999999999999888888
No 101
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=68.23 E-value=24 Score=36.23 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCccccccCCc-eeecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCc-eEEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKV-DLTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI-~L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
|.+++..||.. .|.+-||. .+|+..++ +..++++.... +. .+.++++|++.|..... ---.|-|+++
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~----~~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~w--pgNv~eL~~~ 368 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLA----NHFLQKFSSEN---QRDIIDIDPMAMSLLTAWSW--PGNIRELSNV 368 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHH----HHHHHHHHHHc---CCCCCCcCHHHHHHHHcCCC--CCcHHHHHHH
Confidence 66666666644 34455565 46777676 67777776543 33 35789999999988766 3447999999
Q ss_pred HHHhhhh
Q psy11091 205 MESLLLD 211 (408)
Q Consensus 205 Ie~~L~d 211 (408)
|++.+..
T Consensus 369 ~~~~~~~ 375 (457)
T PRK11361 369 IERAVVM 375 (457)
T ss_pred HHHHHHh
Confidence 9997753
No 102
>KOG0482|consensus
Probab=67.27 E-value=1.9 Score=47.16 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=35.8
Q ss_pred chhhhcccCCCCcceeccccCcchHHHHHHHH------------HHhhccceEEeeccccccccC
Q psy11091 245 FLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV------------SALAAFGIVFLDEVDKIGAVP 297 (408)
Q Consensus 245 fldE~dkia~~~~~~~tRDV~gedv~~~l~kl------------l~~a~~Givfideidki~~~~ 297 (408)
-|-=+.++|+..-.+-.|--||=++-.+..|= |..|..||-+|||+||.+...
T Consensus 391 LLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D 455 (721)
T KOG0482|consen 391 LLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD 455 (721)
T ss_pred HHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh
Confidence 34445577787665555666665555555442 445799999999999998754
No 103
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=66.84 E-value=26 Score=38.80 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=54.1
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceE-EeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDL-TFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L-~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
|++++..||.. .|.+-||.+ +|+..++ +..++++...+ |..+ .|+++|++.|.+.... --.|-|+++
T Consensus 531 f~~~L~~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~~~---~~~~~~~s~~al~~L~~y~WP--GNvrEL~~~ 601 (686)
T PRK15429 531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLV----KAFTFKIARRM---GRNIDSIPAETLRTLSNMEWP--GNVRELENV 601 (686)
T ss_pred ccHHHHhccCeeEEeCCChhhhHhHHHHHH----HHHHHHHHHHc---CCCCCCcCHHHHHHHHhCCCC--CcHHHHHHH
Confidence 78888888876 366777764 6777777 67777766543 3333 5999999999876654 446899999
Q ss_pred HHHhhhh
Q psy11091 205 MESLLLD 211 (408)
Q Consensus 205 Ie~~L~d 211 (408)
|++.+..
T Consensus 602 i~~a~~~ 608 (686)
T PRK15429 602 IERAVLL 608 (686)
T ss_pred HHHHHHh
Confidence 9998763
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=66.28 E-value=24 Score=39.26 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=43.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|.- ++.|.+|+.+++...| ... ++..| +.++++|++.|++.+- -..|.+.+.++++
T Consensus 162 Ll~TI~SRcq-~ieF~~Ls~~eL~~~L----~~i-------l~keg--i~Is~eal~~La~lS~---GdlR~AlnlLekL 224 (605)
T PRK05896 162 IPLTIISRCQ-RYNFKKLNNSELQELL----KSI-------AKKEK--IKIEDNAIDKIADLAD---GSLRDGLSILDQL 224 (605)
T ss_pred hhHHHHhhhh-hcccCCCCHHHHHHHH----HHH-------HHHcC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 3455666664 7899999999998888 222 23345 4578999999998863 2366666777764
No 105
>PRK08727 hypothetical protein; Validated
Probab=66.23 E-value=6.3 Score=37.68 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=46.4
Q ss_pred CCccccccC--CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRF--PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRL--d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|.+..|+ -.++.|++++.+++.+|| .. +++.+| +.++++++++||+.+- --+|.+-.+++
T Consensus 143 ~~~dL~SRl~~~~~~~l~~~~~e~~~~iL----~~-------~a~~~~--l~l~~e~~~~La~~~~---rd~r~~l~~L~ 206 (233)
T PRK08727 143 VLPDLRSRLAQCIRIGLPVLDDVARAAVL----RE-------RAQRRG--LALDEAAIDWLLTHGE---RELAGLVALLD 206 (233)
T ss_pred hhHHHHHHHhcCceEEecCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHhCC---CCHHHHHHHHH
Confidence 357888886 568899999999999999 22 122234 6899999999999953 22344444477
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
++..
T Consensus 207 ~l~~ 210 (233)
T PRK08727 207 RLDR 210 (233)
T ss_pred HHHH
Confidence 6554
No 106
>KOG0479|consensus
Probab=66.09 E-value=2.6 Score=46.76 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=14.9
Q ss_pred hccceEEeecccccccc
Q psy11091 280 AAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 280 a~~Givfideidki~~~ 296 (408)
|.+|+|+|||+||..--
T Consensus 397 ADRGVVCIDEFDKMsDi 413 (818)
T KOG0479|consen 397 ADRGVVCIDEFDKMSDI 413 (818)
T ss_pred ccCceEEehhcccccch
Confidence 59999999999998643
No 107
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=65.78 E-value=4.7 Score=41.27 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=35.3
Q ss_pred cceeccccCcchHHHHHH------H--HHHhhccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 257 GIHQLRDVGGEGVQQGML------K--VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 257 ~~~~tRDV~gedv~~~l~------k--ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
+.+.-+=+||-|++..|. + ++.+|+.||+|||||+.+... +|..||..++.-.|
T Consensus 96 ~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v 157 (334)
T PRK13407 96 GVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGEN 157 (334)
T ss_pred CCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------------HHHHHHHHHHcCCe
Confidence 344445566666666541 1 356789999999999986432 56677777754443
No 108
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=65.27 E-value=29 Score=36.00 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=18.9
Q ss_pred eEEeCHHHHHHHHHHhhccC-CcchhH
Q psy11091 176 DLTFSPEALQAIARLALEKK-TGARGL 201 (408)
Q Consensus 176 ~L~ft~~Al~~IA~~a~d~~-~GAR~L 201 (408)
.+.++++.+++|++.+..-+ -|-|+-
T Consensus 265 ~V~v~~~~~~yi~~l~~~~~~~s~Ra~ 291 (350)
T CHL00081 265 KVEIDYDLRVKISQICSELDVDGLRGD 291 (350)
T ss_pred CCccCHHHHHHHHHHHHHHCCCCChHH
Confidence 46679999999999887744 355554
No 109
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=64.36 E-value=2 Score=43.99 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=32.1
Q ss_pred eccccCcchHHHHHH--------HHHHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 260 QLRDVGGEGVQQGML--------KVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 260 ~tRDV~gedv~~~l~--------kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.-+-+|+-|++..|. -++++|+.|++|||||+.+.. .+|..||..++.
T Consensus 102 ~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~ 157 (337)
T TIGR02030 102 EDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED-------------HLVDVLLDVAAS 157 (337)
T ss_pred ccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-------------HHHHHHHHHHHh
Confidence 334455555555432 157889999999999998642 366677777753
No 110
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=64.27 E-value=22 Score=38.66 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHH-----HhhccCCcchh
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIAR-----LALEKKTGARG 200 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~-----~a~d~~~GAR~ 200 (408)
|+++|..||+. .|.+-||.+ +|+..++ +..++++...+ + +.|+++|++.++. ..|+=---.|-
T Consensus 368 fr~dL~~rL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~~~---~--~~~~~~a~~~~~~~~~~L~~y~WPGNvrE 438 (526)
T TIGR02329 368 FRRDLFYRLSILRIALPPLRERPGDILPLA----AEYLVQAAAAL---R--LPDSEAAAQVLAGVADPLQRYPWPGNVRE 438 (526)
T ss_pred hhHHHHHhcCCcEEeCCCchhchhHHHHHH----HHHHHHHHHHc---C--CCCCHHHHHHhHHHHHHHHhCCCCchHHH
Confidence 78888889974 677788875 6888888 77788776543 3 3589999988322 12333345789
Q ss_pred HHHHHHHhhhh
Q psy11091 201 LRAIMESLLLD 211 (408)
Q Consensus 201 LrriIe~~L~d 211 (408)
|++++++.+..
T Consensus 439 L~nvier~~i~ 449 (526)
T TIGR02329 439 LRNLVERLALE 449 (526)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=63.33 E-value=3.5 Score=44.74 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=14.5
Q ss_pred ccceEEeeccccccccCC
Q psy11091 281 AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 281 ~~Givfideidki~~~~~ 298 (408)
+..||||||||.|+.+.+
T Consensus 289 ~p~IIfIDEiD~L~~~R~ 306 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRG 306 (512)
T ss_pred CCceEEEehhhhhhcccC
Confidence 356999999999997643
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.05 E-value=3.6 Score=41.73 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHhhccceEEeeccccccccCCCccccCCCcccccccccccc
Q psy11091 275 KVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVS 318 (408)
Q Consensus 275 kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~ 318 (408)
++....+.+||||||||+++....... .-+..-+|+.|+.++
T Consensus 209 ~~a~~~~p~il~iDEiD~l~~~~~~~~--~~~~~~~~~~l~~ll 250 (364)
T TIGR01242 209 ELAKEKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLL 250 (364)
T ss_pred HHHHhcCCcEEEhhhhhhhccccccCC--CCccHHHHHHHHHHH
Confidence 333333568999999999987543211 111223566665554
No 113
>KOG0481|consensus
Probab=62.54 E-value=3.4 Score=45.31 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHhhccCCcchhHHHHHHHhhh
Q psy11091 180 SPEALQAIARLALEKKTGARGLRAIMESLLL 210 (408)
Q Consensus 180 t~~Al~~IA~~a~d~~~GAR~LrriIe~~L~ 210 (408)
++++++.|++.-.-.-||-+.+++.|-=+|-
T Consensus 318 ~~d~Ye~is~sIAPSIfG~~DiKkAiaClLF 348 (729)
T KOG0481|consen 318 SPDVYERISKSIAPSIFGHEDIKKAIACLLF 348 (729)
T ss_pred CccHHHHHhhccCchhcCchhHHHHHHHHhh
Confidence 4566777777666678999999888765543
No 114
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=62.16 E-value=2.2 Score=44.07 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=35.5
Q ss_pred ceeccccCcchHHHHHH--------HHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceee
Q psy11091 258 IHQLRDVGGEGVQQGML--------KVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFY 324 (408)
Q Consensus 258 ~~~tRDV~gedv~~~l~--------kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~ 324 (408)
.+.-|=+||=|++..+. =++++|+.||+|||||+.+... +|..||..++...+.
T Consensus 113 ~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ 174 (350)
T CHL00081 113 ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNT 174 (350)
T ss_pred CchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeE
Confidence 34445566666666432 2577899999999999887632 566677777543333
No 115
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=61.55 E-value=5.9 Score=41.73 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=35.9
Q ss_pred hcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhc
Q psy11091 126 DFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALE 193 (408)
Q Consensus 126 k~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d 193 (408)
-+|+..+||.|+= ||.-+|.+++++.+|+ +-+++.++ +.++++|++.|++.|.+
T Consensus 329 phGiP~DlLDRll-II~t~py~~~ei~~Il-----------~iR~~~E~--v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 329 PHGIPLDLLDRLL-IIRTKPYSEEEIKQIL-----------KIRAKEED--VEISEDALDLLTKIGVE 382 (398)
T ss_dssp ETT--HHHHTTEE-EEEE----HHHHHHHH-----------HHHHHHCT----B-HHHHHHHHHHHHH
T ss_pred CCCCCcchHhhcE-EEECCCCCHHHHHHHH-----------Hhhhhhhc--CcCCHHHHHHHHHHhhh
Confidence 3678889999985 7789999999999999 23334445 66799999999999875
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=61.54 E-value=3.1 Score=44.16 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=25.8
Q ss_pred HHHHHHHhh---ccceEEeeccccccccCCCccccCCCc-ccccccccccc
Q psy11091 272 GMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGG-EGVQQGMLKVS 318 (408)
Q Consensus 272 ~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~-egvQ~~ll~~~ 318 (408)
.+.++.+.| +..||||||||.|+.+.... +.++ .-+|+.|+.++
T Consensus 264 ~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~---~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 264 LVRELFRVAEENAPSIVFIDEIDAIGTKRYDA---TSGGEKEIQRTMLELL 311 (438)
T ss_pred HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCC---CCcccHHHHHHHHHHH
Confidence 344454444 55799999999998753321 1111 23566665544
No 117
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.33 E-value=4.4 Score=42.34 Aligned_cols=25 Identities=44% Similarity=0.550 Sum_probs=18.1
Q ss_pred HHHHHHhh---ccceEEeeccccccccC
Q psy11091 273 MLKVSALA---AFGIVFLDEVDKIGAVP 297 (408)
Q Consensus 273 l~kll~~a---~~Givfideidki~~~~ 297 (408)
+.+++..| +..||||||||.|+.+.
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r 254 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKR 254 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhcccc
Confidence 44444443 67899999999998653
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=61.13 E-value=14 Score=33.96 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=47.3
Q ss_pred ccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 131 PEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 131 PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+++.+|++ ..+.+.+|+++++..++ .... +..+ +.+++++++.|++. -.--.|-|+.++++.
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l----~~~~-------~~~~--~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAAL----QSRA-------ARRG--LQLPDEVADYLLRH---GSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHH----HHHH-------HHcC--CCCCHHHHHHHHHh---ccCCHHHHHHHHHHH
Confidence 77888885 68899999999988887 2211 1224 56899999999993 455678899998885
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
-
T Consensus 206 ~ 206 (226)
T TIGR03420 206 D 206 (226)
T ss_pred H
Confidence 4
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=60.64 E-value=9.3 Score=40.52 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.+-+..|+. .++.+++++.+++..|| . +.++..|+.+.++++++++||+..- --+|.|-.++.
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL----~-------~~~~~~gl~~~l~~evl~~Ia~~~~---gd~R~L~gaL~ 321 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAII----K-------KEIKNQNIKQEVTEEAINFISNYYS---DDVRKIKGSVS 321 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHH----H-------HHHHhcCCCCCCCHHHHHHHHHccC---CCHHHHHHHHH
Confidence 5566666664 57889999999999999 2 2233346555899999999999764 35788888888
Q ss_pred Hhhhhhh
Q psy11091 207 SLLLDSM 213 (408)
Q Consensus 207 ~~L~d~l 213 (408)
+++.-..
T Consensus 322 ~l~~~a~ 328 (450)
T PRK14087 322 RLNFWSQ 328 (450)
T ss_pred HHHHHHh
Confidence 7764433
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=60.03 E-value=41 Score=36.92 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=42.5
Q ss_pred ccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
|-+..|.- ++.|.+|+.+++.+.| . +.++..| +.++++|+++||+.+- -..|.+.+.+++.+
T Consensus 164 ~tI~SRc~-~~~f~~l~~~el~~~L----~-------~i~~~eg--i~id~eAl~lLa~~s~---GdlR~alslLdkli 225 (563)
T PRK06647 164 ATIKSRCQ-HFNFRLLSLEKIYNML----K-------KVCLEDQ--IKYEDEALKWIAYKST---GSVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHhce-EEEecCCCHHHHHHHH----H-------HHHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 44555554 5789999999988877 2 2223345 4579999999998754 24677777777654
No 121
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=58.90 E-value=47 Score=33.93 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|+++|..||.. .+.+-||-+ +|+..++ +..++++...... -...++++|++.|...... --.|-|+++|
T Consensus 294 ~~~~l~~~l~~~~i~~ppLreR~~Di~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~wp--gN~reL~~~~ 365 (441)
T PRK10365 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAERNRK--AVKGFTPQAMDLLIHYDWP--GNIRELENAV 365 (441)
T ss_pred chHHHHHHhccceecCCChhhcchhHHHHH----HHHHHHHHHHhCC--CCCCcCHHHHHHHHhCCCC--CHHHHHHHHH
Confidence 67777777765 344555553 5777777 6777776654322 2345899999999987663 3478999999
Q ss_pred HHhhh
Q psy11091 206 ESLLL 210 (408)
Q Consensus 206 e~~L~ 210 (408)
++.+.
T Consensus 366 ~~~~~ 370 (441)
T PRK10365 366 ERAVV 370 (441)
T ss_pred HHHHH
Confidence 98765
No 122
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=58.06 E-value=6.6 Score=40.10 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=26.9
Q ss_pred ccccCcchHHHHHHHHHHh---hccceEEeeccccccccCCC-ccccCCC
Q psy11091 261 LRDVGGEGVQQGMLKVSAL---AAFGIVFLDEVDKIGAVPGI-HQLRDVG 306 (408)
Q Consensus 261 tRDV~gedv~~~l~kll~~---a~~Givfideidki~~~~~~-~~~~dvs 306 (408)
...| |++-. .+-+|.++ +.--||||||+|-||-.... .-.+|||
T Consensus 189 GehV-Gdgar-~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVs 236 (368)
T COG1223 189 GEHV-GDGAR-RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS 236 (368)
T ss_pred HHHh-hhHHH-HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHH
Confidence 3455 54443 34455555 47889999999999965332 1234555
No 123
>PRK04132 replication factor C small subunit; Provisional
Probab=57.73 E-value=6.4 Score=45.23 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=38.2
Q ss_pred cCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHH
Q psy11091 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190 (408)
Q Consensus 136 RLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~ 190 (408)
|-.+|..-..+..+.+.+-+...+..-++.|-+..+.-|+.|+-+-+|.+-.|++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (846)
T PRK04132 419 RRKEIAEKTGIRADRILEYIKGKRKPSLKNYIKIAKALGINLEKTIEAMRIFAKK 473 (846)
T ss_pred HHHHHHHHhCCcHHHHHHHHhcCCCccHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444444444556666666655555567888888888899998888888888775
No 124
>KOG0730|consensus
Probab=57.45 E-value=5.4 Score=44.58 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=25.5
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
.+| | +=|..+.++-.+| .--|||+||||-|+...+
T Consensus 507 k~v-G-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 507 KYV-G-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRG 544 (693)
T ss_pred Hhc-C-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence 466 4 3366666665554 679999999999998754
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.87 E-value=24 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=46.8
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
.+.|.+..|+. ++.|...+.++...++ ...++++...++..|+. ++++|+..|++.+.
T Consensus 143 ~l~~~l~sR~~-~i~~~~p~~~~~~~il----~~~~~~~~~~~~~~~~~--i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 GIIEPLRSRCR-VIDFGVPTKEEQIEMM----KQMIVRCKGILEAEGVE--VDMKVLAALVKKNF 200 (316)
T ss_pred hchHHHHhhce-EEEeCCCCHHHHHHHH----HHHHHHHHHHHHhcCCC--CCHHHHHHHHHhcC
Confidence 36678889996 6789999999999998 56778887777777765 59999999998655
No 126
>PRK06620 hypothetical protein; Validated
Probab=56.30 E-value=12 Score=35.50 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=46.2
Q ss_pred ccccccCCc--eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 131 PEFVGRFPI--LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 131 PEFlgRLd~--IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
|.+..|+-- ++.+++++.+++..++ ++.++..| +.++++++++|++.. .--+|.|-.+++++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l-----------~k~~~~~~--l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILI-----------FKHFSISS--VTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 888899873 7899999999988777 11222234 668999999999987 34467777777774
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.06 E-value=19 Score=38.53 Aligned_cols=64 Identities=23% Similarity=0.461 Sum_probs=47.5
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+- ++.|++++.+++..+| .. .++.+|+ .++++|++.|++.+ .-++|.+-..++++
T Consensus 160 l~~~L~SR~~-vv~f~~l~~~el~~~L----~~-------i~~~egi--~i~~eal~~Ia~~s---~GdlR~aln~Le~l 222 (472)
T PRK14962 160 VPPTIISRCQ-VIEFRNISDELIIKRL----QE-------VAEAEGI--EIDREALSFIAKRA---SGGLRDALTMLEQV 222 (472)
T ss_pred hhHHHhcCcE-EEEECCccHHHHHHHH----HH-------HHHHcCC--CCCHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 5677888884 8999999999998888 22 2223454 68999999999965 35777777777765
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 4
No 128
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=55.65 E-value=26 Score=39.11 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=26.8
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCC---CCCCCCceeEeeCCceeEEecCCCc
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNS---PRKLRGEMVQVDTTNILFVASGAYN 61 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg---~Rk~~~e~i~IDTsNILFI~~GAF~ 61 (408)
...+|+.||+.|+-..+....... ......+.+.+ |+-+|++|.-.
T Consensus 239 ~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~---dvrvI~a~~~~ 287 (637)
T PRK13765 239 DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPC---DFIMVAAGNLD 287 (637)
T ss_pred CHHHHHHHHHHHHhCCEEecccccccccccCCCcceee---eeEEEEecCcC
Confidence 356999999999888887632111 00111233333 55577777753
No 129
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=55.19 E-value=5.7 Score=39.10 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCc
Q psy11091 268 GVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTG 330 (408)
Q Consensus 268 dv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~ 330 (408)
|+..++..|- +.-|+|||||-.+-+. +|.-|||.||.-.+..--..|
T Consensus 91 dl~~il~~l~---~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g 137 (233)
T PF05496_consen 91 DLAAILTNLK---EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKG 137 (233)
T ss_dssp HHHHHHHT-----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSS
T ss_pred HHHHHHHhcC---CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccc
Confidence 4444444432 5679999999887643 677899999988876544444
No 130
>KOG0478|consensus
Probab=55.04 E-value=1.7 Score=48.72 Aligned_cols=44 Identities=18% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCccee
Q psy11091 277 SALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLW 333 (408)
Q Consensus 277 l~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~~ 333 (408)
|..|.+||-+|||+||+..+..+ =|+-+||-.+|+.++-+-.++
T Consensus 522 LVLSD~GiCCIDEFDKM~dStrS-------------vLhEvMEQQTvSIAKAGII~s 565 (804)
T KOG0478|consen 522 LVLSDNGICCIDEFDKMSDSTRS-------------VLHEVMEQQTLSIAKAGIIAS 565 (804)
T ss_pred EEEcCCceEEchhhhhhhHHHHH-------------HHHHHHHHhhhhHhhcceeee
Confidence 44569999999999999543221 488899999999988766554
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=54.97 E-value=15 Score=29.27 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=17.5
Q ss_pred HHHHHHHhhccceEEeeccccccccC
Q psy11091 272 GMLKVSALAAFGIVFLDEVDKIGAVP 297 (408)
Q Consensus 272 ~l~kll~~a~~Givfideidki~~~~ 297 (408)
.+.++++.....+|||||++++....
T Consensus 69 ~~~~~~~~~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 69 LALALARKLKPDVLILDEITSLLDAE 94 (148)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHH
Confidence 33444433334999999999998753
No 132
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=53.95 E-value=5.4 Score=44.10 Aligned_cols=18 Identities=44% Similarity=0.787 Sum_probs=14.6
Q ss_pred ccceEEeeccccccccCC
Q psy11091 281 AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 281 ~~Givfideidki~~~~~ 298 (408)
+-.||||||||.++...+
T Consensus 244 ~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRG 261 (644)
T ss_pred CCcEEEehhHhhhhhccC
Confidence 456999999999987643
No 133
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=53.87 E-value=15 Score=38.97 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 128 GMIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 128 Gf~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
++.+-+..|+. .++.+++++.+++..|| .. .++..| +.++++++++||+..- ...|.|-..+
T Consensus 251 ~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL----~~-------k~~~~~--~~l~~evl~~la~~~~---~dir~L~g~l 314 (445)
T PRK12422 251 AMEERLISRFEWGIAIPLHPLTKEGLRSFL----ER-------KAEALS--IRIEETALDFLIEALS---SNVKSLLHAL 314 (445)
T ss_pred hhHHHHHhhhcCCeEEecCCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHhcC---CCHHHHHHHH
Confidence 36788889996 79999999999999999 22 222234 6789999999999543 5778888888
Q ss_pred HHhh
Q psy11091 206 ESLL 209 (408)
Q Consensus 206 e~~L 209 (408)
++++
T Consensus 315 ~~l~ 318 (445)
T PRK12422 315 TLLA 318 (445)
T ss_pred HHHH
Confidence 8875
No 134
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.65 E-value=7.3 Score=40.40 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
+..+|||||||.+... .|..||+.+|...+
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~i 121 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGTI 121 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCcE
Confidence 6689999999987532 35678898876544
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.45 E-value=73 Score=30.97 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.3
Q ss_pred ChhhHhhhhhhhhcCCeEeeCCC
Q psy11091 12 ETLVHMWKLLCMLEGTIVNVPEK 34 (408)
Q Consensus 12 SGEGVQQaLLKiLEGt~V~Vp~~ 34 (408)
...-+|+.||.+||...+.+|..
T Consensus 117 ~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 117 SKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEccCC
Confidence 44679999999999999999753
No 136
>KOG0480|consensus
Probab=53.37 E-value=3 Score=46.54 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=16.0
Q ss_pred HhhccceEEeecccccccc
Q psy11091 278 ALAAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 278 ~~a~~Givfideidki~~~ 296 (408)
..|.+||-+|||+||+-.+
T Consensus 439 mLADnGICCIDEFDKMd~~ 457 (764)
T KOG0480|consen 439 MLADNGICCIDEFDKMDVK 457 (764)
T ss_pred EEccCceEEechhcccChH
Confidence 3469999999999999764
No 137
>KOG0729|consensus
Probab=52.87 E-value=9 Score=39.28 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=31.0
Q ss_pred HHHHHHHHhh---ccceEEeeccccccccC--CCccccCCCccccccccccccc
Q psy11091 271 QGMLKVSALA---AFGIVFLDEVDKIGAVP--GIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 271 ~~l~kll~~a---~~Givfideidki~~~~--~~~~~~dvs~egvQ~~ll~~~e 319 (408)
.+..+|.+-| ..-|||.||||-|.... ++. -+..-|||-+|-|+.
T Consensus 257 rmvrelf~martkkaciiffdeidaiggarfddg~----ggdnevqrtmleli~ 306 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA----GGDNEVQRTMLELIN 306 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccccccCccccCCC----CCcHHHHHHHHHHHH
Confidence 3555666666 66899999999997542 211 123569999998875
No 138
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=52.85 E-value=23 Score=35.72 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=46.3
Q ss_pred ccccccC-CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 131 PEFVGRF-PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 131 PEFlgRL-d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
|....|+ +..+.|.|++.+++..|+. ..+ +.-|. .-.+++++++.|++.+......+|-.-.++.+.+
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~----~r~---~~~~~----~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILK----DRV---EEGFY----PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHH----HHH---Hhhcc----cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3334444 3578999999999999992 222 22221 1247999999999988654445776666666555
Q ss_pred hhh
Q psy11091 210 LDS 212 (408)
Q Consensus 210 ~d~ 212 (408)
+..
T Consensus 260 ~~a 262 (394)
T PRK00411 260 LIA 262 (394)
T ss_pred HHH
Confidence 433
No 139
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=52.40 E-value=7.4 Score=43.48 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=30.9
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
++.+.++.+.| +..||||||||.|+...+.. ..++. .-+|..||.++++
T Consensus 257 ~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~-~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 257 EERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVE-KRVVAQLLTLMDG 308 (733)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHH-HHHHHHHHHHhhc
Confidence 44555666655 44799999999999764321 11221 2467778888764
No 140
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=52.28 E-value=4.9 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=26.4
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
++|.|+.|.+||||||.+-.. +|.-||.+++...+
T Consensus 317 l~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 317 LFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEV 351 (538)
T ss_pred chhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeE
Confidence 788899999999999987642 56667777755443
No 141
>CHL00176 ftsH cell division protein; Validated
Probab=52.03 E-value=7.6 Score=43.17 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHHHHHHhh---ccceEEeeccccccccC
Q psy11091 272 GMLKVSALA---AFGIVFLDEVDKIGAVP 297 (408)
Q Consensus 272 ~l~kll~~a---~~Givfideidki~~~~ 297 (408)
.+.++.+.| ...||||||||.++...
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r 291 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQR 291 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcc
Confidence 345555555 44699999999998654
No 142
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=51.97 E-value=13 Score=42.24 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=22.5
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
.+.++|||||||+..... | ..|.+||.+++
T Consensus 416 ~~~villDEidk~~~~~~--------g-~~~~aLlevld 445 (784)
T PRK10787 416 KNPLFLLDEIDKMSSDMR--------G-DPASALLEVLD 445 (784)
T ss_pred CCCEEEEEChhhcccccC--------C-CHHHHHHHHhc
Confidence 577999999999975321 1 25679999987
No 143
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=51.36 E-value=7.3 Score=38.97 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=30.1
Q ss_pred ceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCc
Q psy11091 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTG 330 (408)
Q Consensus 283 Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~ 330 (408)
+|+|+|||++.... +|-+||.+++...|.++...+
T Consensus 114 ~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~ 148 (329)
T COG0714 114 VILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTT 148 (329)
T ss_pred eEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCC
Confidence 89999999987633 677999999999999998876
No 144
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.07 E-value=7 Score=42.22 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHhhccc---eEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 267 EGVQQGMLKVSALAAFG---IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 267 edv~~~l~kll~~a~~G---ivfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+++.++.-++......| |+||||+|++... .|.+||+.+|.
T Consensus 104 d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALLKtLEE 147 (484)
T PRK14956 104 ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALLKTLEE 147 (484)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHHHHhhc
Confidence 45555444444333334 9999999999542 47799999986
No 145
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=50.98 E-value=27 Score=34.72 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=43.9
Q ss_pred ccccC-CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhh
Q psy11091 133 FVGRF-PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLD 211 (408)
Q Consensus 133 FlgRL-d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d 211 (408)
...|+ +..+.|.|++.+++.+|+ ...++. -+ . ...+++++++.+++.+-...--+|-.-.++++.++.
T Consensus 185 ~~s~~~~~~i~f~p~~~~e~~~il----~~r~~~---~~-~---~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 185 VKSSLCEEEIIFPPYDAEELRDIL----ENRAEK---AF-Y---DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred HhccCCcceeeeCCCCHHHHHHHH----HHHHHh---hc-c---CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33455 357899999999999999 232221 11 1 124889999999887654433456665666665544
Q ss_pred h
Q psy11091 212 S 212 (408)
Q Consensus 212 ~ 212 (408)
.
T Consensus 254 a 254 (365)
T TIGR02928 254 A 254 (365)
T ss_pred H
Confidence 3
No 146
>KOG0734|consensus
Probab=50.66 E-value=12 Score=41.54 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=19.3
Q ss_pred HHHHHHhh---ccceEEeeccccccccCC
Q psy11091 273 MLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 273 l~kll~~a---~~Givfideidki~~~~~ 298 (408)
+.+|..+| .--||||||||-|-.+..
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCC
Confidence 34555555 678999999999987643
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=50.47 E-value=9.3 Score=43.80 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhh----ccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCcceee
Q psy11091 268 GVQQGMLKVSALA----AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334 (408)
Q Consensus 268 dv~~~l~kll~~a----~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~~~ 334 (408)
+.+.-+.+++..+ ..-|+|||||+.|+..+++.+ +..+|.-|+|.++--.+.+---+...-|
T Consensus 254 ~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-----~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 254 EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-----AMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-----chhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 3555566555442 345999999999986543222 2345667888888777666666665554
No 148
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=50.04 E-value=30 Score=35.58 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=49.5
Q ss_pred CCccccccCCc--eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFPI--LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd~--IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+-|-+.+|+.. +|.|++.+.++...|| ...+ +..+ +.++++++++||+..- --.|.|..+|.
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il----~~~~-------~~~~--~~l~~e~l~~ia~~~~---~~~r~l~~~l~ 312 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAIL----QKKA-------EEEG--LELPDEVLEFIAKNIR---SNVRELEGALN 312 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHH----HHHH-------HHcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 56788999974 8999999999999999 2222 2233 5678999999997642 23577777777
Q ss_pred Hhhhhh
Q psy11091 207 SLLLDS 212 (408)
Q Consensus 207 ~~L~d~ 212 (408)
++..-.
T Consensus 313 ~l~~~a 318 (405)
T TIGR00362 313 RLLAYA 318 (405)
T ss_pred HHHHHH
Confidence 765433
No 149
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=50.04 E-value=39 Score=33.00 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=36.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
+.|-+..|. ..+.|.+++.+++.+++ .. .++..|+. ++++|++.|++.+
T Consensus 168 ~~~~L~sr~-~~v~~~~~~~~~~~~~l----~~-------~~~~~~~~--~~~~al~~l~~~~ 216 (337)
T PRK12402 168 LIPPIRSRC-LPLFFRAPTDDELVDVL----ES-------IAEAEGVD--YDDDGLELIAYYA 216 (337)
T ss_pred CchhhcCCc-eEEEecCCCHHHHHHHH----HH-------HHHHcCCC--CCHHHHHHHHHHc
Confidence 445677776 57899999999998888 22 23344654 8999999999987
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=49.25 E-value=13 Score=35.29 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=47.5
Q ss_pred CccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 130 IPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 130 ~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
.|.+..|+- .++.+++++.++..+|+ .. .+..++ +.++++++++|++..- --.|.|..++++
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL----~~-------~a~~~~--l~l~~~v~~~L~~~~~---~d~r~l~~~l~~ 206 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVL----QR-------NAYQRG--IELSDEVANFLLKRLD---RDMHTLFDALDL 206 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHhcc---CCHHHHHHHHHH
Confidence 377888774 68889999999999999 22 222233 7889999999999863 346777777877
Q ss_pred hh
Q psy11091 208 LL 209 (408)
Q Consensus 208 ~L 209 (408)
+-
T Consensus 207 l~ 208 (229)
T PRK06893 207 LD 208 (229)
T ss_pred HH
Confidence 53
No 151
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=49.08 E-value=49 Score=33.96 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=26.2
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCce
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNI 52 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNI 52 (408)
...+|++||..||...++|...|.+.+.+..++.|-|.|-
T Consensus 141 ~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 141 EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc
Confidence 3578999999999888877655543333444455555553
No 152
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=48.95 E-value=6.5 Score=43.35 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=30.1
Q ss_pred HHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeC
Q psy11091 274 LKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRY 326 (408)
Q Consensus 274 ~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~ 326 (408)
..+++.|..|++||||++.+-. -.|..||++++.-.+...
T Consensus 258 ~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 258 TGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred cCchhhcCCCeEEEeccccCCH-------------HHHHHHHHHHhhCeEEee
Confidence 3467788999999999987642 257789999987665544
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=48.34 E-value=9 Score=43.75 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhh----ccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCcceee
Q psy11091 268 GVQQGMLKVSALA----AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334 (408)
Q Consensus 268 dv~~~l~kll~~a----~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~~~ 334 (408)
+.+..+.+++..+ ..-|+|||||+.|+..+...++.| ++.-|+|+++.-.+.+---+...-|
T Consensus 249 ~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d-----~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 249 EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD-----AGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH-----HHHHhchhhhcCceEEEEeCcHHHH
Confidence 4566666666654 345999999999986533222222 4556777777666665555555444
No 154
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=48.17 E-value=1.1e+02 Score=33.64 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=49.1
Q ss_pred CCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHH-----HhhccCCcchh
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIAR-----LALEKKTGARG 200 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~-----~a~d~~~GAR~ 200 (408)
|+++|..||.. .|.+-||.+ +|+..++ +..++++...+ + +.++++++..+.+ ..|+=---.|-
T Consensus 383 Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~~~---~--~~~~~~a~~~~~~a~~~L~~y~WPGNvRE 453 (538)
T PRK15424 383 FRRDLFYRLSILRLQLPPLRERVADILPLA----ESFLKQSLAAL---S--APFSAALRQGLQQCETLLLHYDWPGNVRE 453 (538)
T ss_pred chHHHHHHhcCCeecCCChhhchhHHHHHH----HHHHHHHHHHc---C--CCCCHHHHHhhHHHHHHHHhCCCCchHHH
Confidence 77788888865 456667764 6787777 67777764433 2 2378888755433 22344455899
Q ss_pred HHHHHHHhhh
Q psy11091 201 LRAIMESLLL 210 (408)
Q Consensus 201 LrriIe~~L~ 210 (408)
|+++|++.+.
T Consensus 454 L~nvier~~i 463 (538)
T PRK15424 454 LRNLMERLAL 463 (538)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 155
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.05 E-value=11 Score=39.79 Aligned_cols=34 Identities=38% Similarity=0.446 Sum_probs=25.1
Q ss_pred ccchhhhcccCCCCccee-ccccCcchHHHHHHHHHHh
Q psy11091 243 IVFLDEVDKIGAVPGIHQ-LRDVGGEGVQQGMLKVSAL 279 (408)
Q Consensus 243 IvfldE~dkia~~~~~~~-tRDV~gedv~~~l~kll~~ 279 (408)
|+|+||+|.|+.+-.-+. .+|- .||.-|+.||..
T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDr---EVQRTmleLL~q 281 (406)
T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDR---EVQRTMLELLNQ 281 (406)
T ss_pred EEEEechhhhhcccccCCCCchH---HHHHHHHHHHHh
Confidence 569999999887643222 2333 899999999974
No 156
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=47.71 E-value=5.8 Score=43.00 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.7
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
++|.|+.|.+||||||.+-.. +|.-||.+++...
T Consensus 302 l~e~A~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~ 335 (526)
T TIGR02329 302 LIEAAHRGTLFLDEIGEMPLP-------------LQTRLLRVLEERE 335 (526)
T ss_pred chhhcCCceEEecChHhCCHH-------------HHHHHHHHHhcCc
Confidence 788899999999999987642 5666666665443
No 157
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=47.45 E-value=9.3 Score=36.87 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
.+..|.+||+||||+--.-. .|-..|+..+|.-.|.+
T Consensus 101 eislAh~GVLflDE~~ef~~-------------~vld~Lr~ple~g~v~i 137 (206)
T PF01078_consen 101 EISLAHRGVLFLDELNEFDR-------------SVLDALRQPLEDGEVTI 137 (206)
T ss_dssp CGGGGTTSEEEECETTTS-H-------------HHHHHHHHHHHHSBEEE
T ss_pred HHHHhcCCEEEechhhhcCH-------------HHHHHHHHHHHCCeEEE
Confidence 36789999999999843321 24445666665544443
No 158
>KOG1942|consensus
Probab=46.84 E-value=22 Score=36.97 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=46.4
Q ss_pred hcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 126 DFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 126 k~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
-+|..|+++.||= ||.-.+-+++++.+|+ +.+.+.+| |.++++|+..+++.|-. +.||-.+
T Consensus 348 PhGip~dllDRl~-Iirt~~y~~~e~r~Ii-----------~~Ra~~E~--l~~~e~a~~~l~~~gt~-----tsLRy~v 408 (456)
T KOG1942|consen 348 PHGIPPDLLDRLL-IIRTLPYDEEEIRQII-----------KIRAQVEG--LQVEEEALDLLAEIGTS-----TSLRYAV 408 (456)
T ss_pred CCCCCHHHhhhee-EEeeccCCHHHHHHHH-----------HHHHhhhc--ceecHHHHHHHHhhccc-----hhHHHHH
Confidence 4789999999985 6667788999999998 12222334 67899999999998753 5676666
Q ss_pred H
Q psy11091 206 E 206 (408)
Q Consensus 206 e 206 (408)
+
T Consensus 409 q 409 (456)
T KOG1942|consen 409 Q 409 (456)
T ss_pred H
Confidence 5
No 159
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.44 E-value=16 Score=40.47 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=19.5
Q ss_pred HHHHHHhh---ccceEEeeccccccccCC
Q psy11091 273 MLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 273 l~kll~~a---~~Givfideidki~~~~~ 298 (408)
...|-++| +--||||||||.+.+..+
T Consensus 231 VRdLF~qAkk~aP~IIFIDEiDAvGr~Rg 259 (596)
T COG0465 231 VRDLFEQAKKNAPCIIFIDEIDAVGRQRG 259 (596)
T ss_pred HHHHHHHhhccCCCeEEEehhhhcccccC
Confidence 34566666 458999999999987643
No 160
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=46.20 E-value=14 Score=39.34 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=25.7
Q ss_pred cccCcchHHHHHH--------HHHHhhccceEEeecccccc
Q psy11091 262 RDVGGEGVQQGML--------KVSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 262 RDV~gedv~~~l~--------kll~~a~~Givfideidki~ 294 (408)
|=||.=|++.++- =||.+|+.||+|+||+--+.
T Consensus 117 rvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~ 157 (423)
T COG1239 117 RLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD 157 (423)
T ss_pred hhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc
Confidence 3366668888776 36889999999999995554
No 161
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=45.97 E-value=5.3 Score=41.05 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=24.7
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+++.|+.|++||||||.+... +|.-||.+++..
T Consensus 228 ~~~~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~ 260 (445)
T TIGR02915 228 KIEYAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQER 260 (445)
T ss_pred ceeECCCCEEEEechhhCCHH-------------HHHHHHHHHhhC
Confidence 577899999999999988642 555666666543
No 162
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.96 E-value=29 Score=35.40 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=45.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-+.+|. .++.|.||+.+++.++| .. .++..| +.++++|++.||+.+- -..|...+.+++.
T Consensus 162 l~~tI~SRc-~~~~~~~l~~~el~~~L----~~-------~~~~~g--~~i~~~al~~ia~~s~---G~~R~al~~l~~~ 224 (363)
T PRK14961 162 IPKTILSRC-LQFKLKIISEEKIFNFL----KY-------ILIKES--IDTDEYALKLIAYHAH---GSMRDALNLLEHA 224 (363)
T ss_pred hhHHHHhhc-eEEeCCCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 555677787 68899999999999888 22 223334 5579999999999762 2356666666655
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 225 ~ 225 (363)
T PRK14961 225 I 225 (363)
T ss_pred H
Confidence 4
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.95 E-value=13 Score=38.11 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=25.8
Q ss_pred ccchhhhcccCCCCcc-eeccccCcchHHHHHHHHHH-hhccceEEe
Q psy11091 243 IVFLDEVDKIGAVPGI-HQLRDVGGEGVQQGMLKVSA-LAAFGIVFL 287 (408)
Q Consensus 243 IvfldE~dkia~~~~~-~~tRDV~gedv~~~l~kll~-~a~~Givfi 287 (408)
||||||.|.||=--.. +--+|| -|-|...|.+|=- .-+.|+|+|
T Consensus 213 ivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 213 IVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred EEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEE
Confidence 6799999998765443 223455 3455555554410 026788874
No 164
>PLN03025 replication factor C subunit; Provisional
Probab=45.89 E-value=26 Score=34.94 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=37.4
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
+.|.+..|+ .++.|.+|+.+++.+.| +..++.+|+ .++++++++|++.+-
T Consensus 142 i~~~L~SRc-~~i~f~~l~~~~l~~~L-----------~~i~~~egi--~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 142 IIEPIQSRC-AIVRFSRLSDQEILGRL-----------MKVVEAEKV--PYVPEGLEAIIFTAD 191 (319)
T ss_pred cchhHHHhh-hcccCCCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHcC
Confidence 457778887 47899999999988888 222334565 468999999998763
No 165
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=45.87 E-value=5.4 Score=43.54 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
+++.|+.|++||||||.+... +|.-||.+++...
T Consensus 411 ~~~~a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 411 KFELAHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGV 444 (638)
T ss_pred ceeECCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCc
Confidence 467889999999999988643 4556666665443
No 166
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=45.18 E-value=21 Score=32.93 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=14.3
Q ss_pred CceeEEecCCCccHHHHHHhh
Q psy11091 50 TNILFVASGAYNGLDRLISRR 70 (408)
Q Consensus 50 sNILFI~~GAF~GL~kiI~~R 70 (408)
++|.||-|||| |+++.+.+|
T Consensus 98 ~~i~F~IGGa~-G~~~~v~~~ 117 (157)
T PRK00103 98 SDVAFVIGGAD-GLSPAVKKR 117 (157)
T ss_pred ccEEEEEcCcc-ccCHHHHHh
Confidence 58999999995 665555544
No 167
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.48 E-value=8.4 Score=43.36 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 266 GEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 266 gedv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
-++|.+++.++.... ..-|++|||+|++... .|..|||.+|.
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-------------AaNALLKTLEE 150 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-------------AFNAMLKTLEE 150 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-------------HHHHHHHhhcc
Confidence 356666666665444 3459999999999542 35589999996
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=44.00 E-value=9.9 Score=38.53 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||.+..
T Consensus 88 ~~~~a~gGtL~Ldei~~L~~ 107 (329)
T TIGR02974 88 RFERADGGTLFLDELATASL 107 (329)
T ss_pred chhhCCCCEEEeCChHhCCH
Confidence 67889999999999997653
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=43.87 E-value=18 Score=41.24 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCcceee
Q psy11091 268 GVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWY 334 (408)
Q Consensus 268 dv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~~~ 334 (408)
+.++-|.++++.+ ...|+|||||+.|+..++..+ +.-++.=|.|.++--.+.+---+...-|
T Consensus 255 e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-----~~~~a~lLkp~l~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 255 EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-----AIDAANILKPALARGELQCIGATTLDEY 319 (821)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-----cccHHHHhHHHHhCCCcEEEEeCCHHHH
Confidence 4677777777655 346999999999987643211 1224444556666544554444444433
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=43.44 E-value=28 Score=36.52 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=48.5
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|-+..|+. .++.|++++.+++.+|| ....+ .. .+.++++++++||+..- --+|.|..+|.
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il----~~~~~-------~~--~~~l~~e~l~~ia~~~~---~~~R~l~~~l~ 324 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAIL----KKKAE-------EE--GIDLPDEVLEFIAKNIT---SNVRELEGALN 324 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHH----HHHHH-------Hc--CCCCCHHHHHHHHcCcC---CCHHHHHHHHH
Confidence 5577889996 58999999999999999 22222 22 46789999999999852 34566766777
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
++..
T Consensus 325 ~l~~ 328 (450)
T PRK00149 325 RLIA 328 (450)
T ss_pred HHHH
Confidence 6643
No 171
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=43.26 E-value=16 Score=41.36 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=21.6
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.+.+||||||||+.+... +|. ...||.+++.
T Consensus 414 ~~~villDEidk~~~~~~----~~~-----~~aLl~~ld~ 444 (775)
T TIGR00763 414 KNPLFLLDEIDKIGSSFR----GDP-----ASALLEVLDP 444 (775)
T ss_pred CCCEEEEechhhcCCccC----CCH-----HHHHHHhcCH
Confidence 567999999999985321 121 2368888874
No 172
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=42.24 E-value=5.3 Score=43.77 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=27.2
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
+|.+|+.|++|||||+.+.. .+|..||..++--.|++
T Consensus 79 ~L~~A~~GvL~lDEi~rl~~-------------~~q~~Ll~al~~g~v~i 115 (589)
T TIGR02031 79 LLDEAPRGVLYVDMANLLDD-------------GLSNRLLQALDEGVVIV 115 (589)
T ss_pred CeeeCCCCcEeccchhhCCH-------------HHHHHHHHHHHcCCeEE
Confidence 46678999999999988764 36667888776444433
No 173
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=42.22 E-value=38 Score=37.44 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCCcceeccccCcchHHHHHHH--------HHHhhccceEEeeccccc
Q psy11091 254 AVPGIHQLRDVGGEGVQQGMLK--------VSALAAFGIVFLDEVDKI 293 (408)
Q Consensus 254 ~~~~~~~tRDV~gedv~~~l~k--------ll~~a~~Givfideidki 293 (408)
..++.+.-+=+||=|++..|.. +|.+|++||+||||+--.
T Consensus 58 ~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 58 LPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred CCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 3445555666777666666521 477899999999998443
No 174
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=42.15 E-value=70 Score=34.02 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=45.9
Q ss_pred cCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeC-HHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhc
Q psy11091 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFS-PEALQAIARLALEKKTGARGLRAIMESLLLDSMY 214 (408)
Q Consensus 136 RLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft-~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~ 214 (408)
|++.+|.+=||.+- ..+|+.- -.-.++++.+++ +..+... ++|++.+-...+..+ -|-|+..|++.+...-.
T Consensus 239 l~~~~I~LPpLrER-~~Di~~L-~e~Fl~~~~~~l---~~~~~~~~~~a~~~L~~y~~pGN--irELkN~Ve~~~~~~~~ 311 (403)
T COG1221 239 LNILTITLPPLRER-KEDILLL-AEHFLKSEARRL---GLPLSVDSPEALRALLAYDWPGN--IRELKNLVERAVAQASG 311 (403)
T ss_pred hcCceecCCChhhc-hhhHHHH-HHHHHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCCc--HHHHHHHHHHHHHHhcc
Confidence 56778888888865 5555510 033455555543 4444444 488888876555444 57899999998876643
Q ss_pred c
Q psy11091 215 E 215 (408)
Q Consensus 215 d 215 (408)
+
T Consensus 312 ~ 312 (403)
T COG1221 312 E 312 (403)
T ss_pred c
Confidence 3
No 175
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=42.06 E-value=72 Score=33.99 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcc--hhHHHHHHH
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA--RGLRAIMES 207 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GA--R~LrriIe~ 207 (408)
.++|.|-.-.+|.+.||+.++|..++ ..+ ..+-+. ..+..-.++++.++.+++..+.+--|. +.-|.+|.+
T Consensus 317 ~~~~~n~~~pvIrL~~l~~eel~~l~----~kl-r~i~a~--~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~ 389 (416)
T PF10923_consen 317 DDGFDNLRAPVIRLQPLTPEELLELL----EKL-RDIYAE--AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKD 389 (416)
T ss_pred cccccCccCceecCCCCCHHHHHHHH----HHH-HHHHHh--hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHH
Confidence 48888888999999999999999777 232 222222 345568899999999999887653333 222555555
Q ss_pred hh--hhhhccCCC
Q psy11091 208 LL--LDSMYEVPG 218 (408)
Q Consensus 208 ~L--~d~l~d~pg 218 (408)
.+ +|.+.+-|+
T Consensus 390 fv~~Ld~~~q~p~ 402 (416)
T PF10923_consen 390 FVDVLDILEQNPD 402 (416)
T ss_pred HHHHHHHHHHCCC
Confidence 54 344444455
No 176
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=41.60 E-value=37 Score=33.57 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=43.8
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
.|-+..|. ..+.|.+++.+++.+++ .. .++..|+ .++++++..|++.+- ...|.+...+++..
T Consensus 161 ~~~l~sr~-~~~~~~~~~~~~l~~~l----~~-------~~~~~g~--~i~~~a~~~l~~~~~---g~~~~a~~~lekl~ 223 (355)
T TIGR02397 161 PATILSRC-QRFDFKRIPLEDIVERL----KK-------ILDKEGI--KIEDEALELIARAAD---GSLRDALSLLDQLI 223 (355)
T ss_pred HHHHHhhe-eEEEcCCCCHHHHHHHH----HH-------HHHHcCC--CCCHHHHHHHHHHcC---CChHHHHHHHHHHH
Confidence 35566676 47899999999998888 22 2334464 578999999998752 24566666666655
Q ss_pred h
Q psy11091 210 L 210 (408)
Q Consensus 210 ~ 210 (408)
.
T Consensus 224 ~ 224 (355)
T TIGR02397 224 S 224 (355)
T ss_pred h
Confidence 4
No 177
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=40.22 E-value=40 Score=39.75 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=47.7
Q ss_pred CccccccCCc-eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 130 IPEFVGRFPI-LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 130 ~PEFlgRLd~-IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
.|-+..|+.. .++|.|++.++|..|| ...++. + . -.|+++|++.+|+.+....--||-.-.++++.
T Consensus 919 dPRLRSRLg~eeIvF~PYTaEQL~dIL----k~RAe~----A--~---gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 919 IPRCRSRLAFGRLVFSPYKGDEIEKII----KERLEN----C--K---EIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred hhhhhhccccccccCCCCCHHHHHHHH----HHHHHh----C--C---CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 3444455543 4889999999999999 232222 1 1 25899999999998876666677766666666
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
++
T Consensus 986 gE 987 (1164)
T PTZ00112 986 FE 987 (1164)
T ss_pred Hh
Confidence 65
No 178
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=40.09 E-value=29 Score=38.37 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
.+.|-|..|+. .+.|.||+.+++..|+ ...+++ .+ +.++++|++.|++.+.
T Consensus 336 ~l~~aLrSR~~-~i~~~pls~edi~~Il----~~~a~~-------~~--v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 336 EINPALRSRCA-EVFFEPLTPEDIALIV----LNAAEK-------IN--VHLAAGVEELIARYTI 386 (615)
T ss_pred ccCHHHHhcee-EEEeCCCCHHHHHHHH----HHHHHH-------cC--CCCCHHHHHHHHHCCC
Confidence 35677888987 4589999999999999 333322 23 3578999999999755
No 179
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=39.35 E-value=14 Score=41.56 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 180 SPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 180 t~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
.++..+.|++.-.-.-||+.-++..|
T Consensus 273 ~~~i~~~l~~SiaPsIyG~e~VKkAi 298 (682)
T COG1241 273 RPDIYDILIKSIAPSIYGHEDVKKAI 298 (682)
T ss_pred CCcHHHHHHHHhcccccCcHHHHHHH
Confidence 35667788887788889999876554
No 180
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=38.46 E-value=22 Score=30.74 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHhhccceEEeeccccccc
Q psy11091 274 LKVSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 274 ~kll~~a~~Givfideidki~~ 295 (408)
.++++.|+.|++||+|||.+..
T Consensus 62 ~~~l~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 62 AELLEQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp HHHHHHCTTSEEEEECGCCS-H
T ss_pred HHHHHHcCCCEEEECChHHCCH
Confidence 6688889999999999999865
No 181
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=38.45 E-value=32 Score=36.53 Aligned_cols=61 Identities=20% Similarity=0.407 Sum_probs=46.4
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+|+...||.|+ .||.-.|-+.+++..|+ +-+.+.+ .+.++++|+++|++.|-+ .+||-.++
T Consensus 343 hGIP~DlLDRl-lII~t~py~~~EireIi-----------~iRa~ee--~i~l~~~Ale~L~~ig~e-----tSLRYa~q 403 (450)
T COG1224 343 HGIPLDLLDRL-LIISTRPYSREEIREII-----------RIRAKEE--DIELSDDALEYLTDIGEE-----TSLRYAVQ 403 (450)
T ss_pred CCCCHhhhhhe-eEEecCCCCHHHHHHHH-----------HHhhhhh--ccccCHHHHHHHHhhchh-----hhHHHHHH
Confidence 68888999988 48889999999999999 1222233 466799999999999864 45665554
No 182
>KOG0736|consensus
Probab=37.43 E-value=32 Score=39.63 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhc
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~IL 155 (408)
++.|++.+-+.-.+.+..|++++-.+||
T Consensus 545 ~lp~~i~~~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 545 DLPADIQSLFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred cCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence 4677777777778888889998888877
No 183
>KOG0727|consensus
Probab=37.23 E-value=16 Score=37.22 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=25.2
Q ss_pred ccchhhhcccCCCCcceeccccCcchHHHHHHHHHHh
Q psy11091 243 IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSAL 279 (408)
Q Consensus 243 IvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~ 279 (408)
|+||||+|.||.+-=-.+|+ + --.||.+|++||..
T Consensus 251 iifideidaiatkrfdaqtg-a-drevqril~ellnq 285 (408)
T KOG0727|consen 251 IIFIDEIDAIATKRFDAQTG-A-DREVQRILIELLNQ 285 (408)
T ss_pred EEEeehhhhHhhhhcccccc-c-cHHHHHHHHHHHHh
Confidence 67999999998763322331 1 24799999999974
No 184
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=37.21 E-value=34 Score=30.74 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHhhccceEEeecccccc
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfideidki~ 294 (408)
.+.+++.+..|-.....-||+|||+|.++
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 44555555555554556899999999999
No 185
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=36.64 E-value=33 Score=32.45 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=46.5
Q ss_pred ccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhh
Q psy11091 133 FVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDS 212 (408)
Q Consensus 133 FlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~ 212 (408)
+..|+...+.|.+|+.+++.+++ ...+++. ...-...|++++++.|++.+--- .|.+..+....+...
T Consensus 179 l~~r~~~~~~l~~l~~~e~~~~l----~~~l~~~-----g~~~~~~~~~~~~~~i~~~s~G~---p~~i~~l~~~~~~~a 246 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYI----EHRLERA-----GNRDAPVFSEGAFDAIHRFSRGI---PRLINILCDRLLLSA 246 (269)
T ss_pred HHhheeeeeeCCCCCHHHHHHHH----HHHHHHc-----CCCCCCCcCHHHHHHHHHHcCCc---ccHHHHHHHHHHHHH
Confidence 56677778899999999999888 4444332 11123458999999999976311 455666666665554
Q ss_pred h
Q psy11091 213 M 213 (408)
Q Consensus 213 l 213 (408)
.
T Consensus 247 ~ 247 (269)
T TIGR03015 247 F 247 (269)
T ss_pred H
Confidence 3
No 186
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=36.34 E-value=12 Score=41.75 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhhccc---eEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 267 EGVQQGMLKVSALAAFG---IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 267 edv~~~l~kll~~a~~G---ivfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
+++.+++-++..+...| |+||||+|++...... .|||.+|
T Consensus 102 ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~N-------------ALLKtLE 144 (647)
T PRK07994 102 EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFN-------------ALLKTLE 144 (647)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHH-------------HHHHHHH
No 187
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=36.26 E-value=15 Score=30.31 Aligned_cols=13 Identities=54% Similarity=0.935 Sum_probs=5.8
Q ss_pred CceeEEEEeCCce
Q psy11091 338 NTGYIWYRYPNTG 350 (408)
Q Consensus 338 ~~~~~~~~~~~~~ 350 (408)
++||.|||-|-||
T Consensus 25 ~k~Yy~Yr~P~tG 37 (75)
T PF09003_consen 25 GKGYYQYRNPITG 37 (75)
T ss_dssp --SEEEEE-TTTS
T ss_pred ceeEEEEecCCCC
Confidence 4556556655555
No 188
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.75 E-value=65 Score=34.89 Aligned_cols=65 Identities=32% Similarity=0.428 Sum_probs=46.5
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|.. ++.|.+|+.+++...| ++.++.+|+ .++++|++.|++.+- --.|-+...++++
T Consensus 159 l~~~I~SRc~-~~~f~~ls~~el~~~L-----------~~i~~~egi--~i~~~Al~~ia~~s~---GdlR~aln~Lekl 221 (504)
T PRK14963 159 MPPTILSRTQ-HFRFRRLTEEEIAGKL-----------RRLLEAEGR--EAEPEALQLVARLAD---GAMRDAESLLERL 221 (504)
T ss_pred CChHHhcceE-EEEecCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 5566777765 7899999999988888 233444565 469999999998873 3456666666766
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 222 ~~ 223 (504)
T PRK14963 222 LA 223 (504)
T ss_pred Hh
Confidence 53
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=35.73 E-value=14 Score=38.57 Aligned_cols=42 Identities=14% Similarity=-0.032 Sum_probs=30.9
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCCc
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTG 330 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~ 330 (408)
+|-+|++||+-+|||+|.-.. .|++||-+++--.|..|...+
T Consensus 231 ~l~~aNrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~~~~~~~ 272 (361)
T smart00763 231 ALNRANRGILEFVEMFKADIK-------------FLHPLLTATQEGNIKGTGGFA 272 (361)
T ss_pred ccccccCceEEEeehhcCCHH-------------HHHHHhhhhhcceEecCCccc
Confidence 477789999999999997543 566777777766666665443
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=35.73 E-value=26 Score=29.06 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHhhccceEEeecccccc
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfideidki~ 294 (408)
.+++-+.+.+.+.+....+|+|||+|.+.
T Consensus 72 ~~~l~~~~~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 72 SDELRSLLIDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHHHHHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChHhcC
Confidence 34444666666666566799999999985
No 191
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=35.44 E-value=19 Score=29.62 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=28.8
Q ss_pred cccchhhhcccCCCCcceeccccCcchHHHHHHHHHHhhcc---ceEEe
Q psy11091 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAF---GIVFL 287 (408)
Q Consensus 242 GIvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~a~~---Givfi 287 (408)
.++||||+|++....+. . .....+.+.+.|+++++.... .+++|
T Consensus 60 ~vl~iDe~d~l~~~~~~-~-~~~~~~~~~~~L~~~l~~~~~~~~~~~vI 106 (132)
T PF00004_consen 60 CVLFIDEIDKLFPKSQP-S-SSSFEQRLLNQLLSLLDNPSSKNSRVIVI 106 (132)
T ss_dssp EEEEEETGGGTSHHCST-S-SSHHHHHHHHHHHHHHHTTTTTSSSEEEE
T ss_pred eeeeeccchhccccccc-c-cccccccccceeeecccccccccccceeE
Confidence 57799999997776521 1 222256777888888877643 45554
No 192
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=35.42 E-value=38 Score=28.00 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=23.3
Q ss_pred CcchHHHHHHHHHHhhccceEEeec
Q psy11091 265 GGEGVQQGMLKVSALAAFGIVFLDE 289 (408)
Q Consensus 265 ~gedv~~~l~kll~~a~~Givfide 289 (408)
+.|++.+.+.+|+..-+.|||+|+|
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~e 50 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIITE 50 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEEH
T ss_pred CHHHHHHHHHHHhcCCCccEEEeeH
Confidence 6789999999999989999999987
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=35.39 E-value=12 Score=36.14 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=30.9
Q ss_pred cCcchHHHHHHHHHHh---hccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 264 VGGEGVQQGMLKVSAL---AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 264 V~gedv~~~l~kll~~---a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
+.-|.|.++...+... ...=||+|||+|++.. ..|.+||+.+|-..
T Consensus 89 i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-------------~A~nallk~lEep~ 137 (325)
T COG0470 89 IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-------------DAANALLKTLEEPP 137 (325)
T ss_pred chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhccCC
Confidence 3344455555555443 3566999999999986 35568999998643
No 194
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=35.26 E-value=13 Score=38.33 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=29.4
Q ss_pred ccCcchHHHHHHHHHHhhccc---eEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 263 DVGGEGVQQGMLKVSALAAFG---IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 263 DV~gedv~~~l~kll~~a~~G---ivfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.++-++|.++.-.+-..++.| ||+|||+|++-.. .|.+||+++|.
T Consensus 120 ~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-------------aanaLLk~LEE 167 (351)
T PRK09112 120 AITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-------------AANAILKTLEE 167 (351)
T ss_pred cCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-------------HHHHHHHHHhc
Confidence 344455655444444444555 9999999999543 24479999986
No 195
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=35.21 E-value=37 Score=39.10 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
.-|-|..|+. +|.+.+++.++..+|| ..+.+.|.+. ..+.++++|++.+++.+
T Consensus 334 ~d~AL~rRf~-~i~v~eps~~~~~~iL----~~~~~~~e~~-----~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 334 KDPALTRRFQ-VVKVEEPDEETAIRML----RGLAPVLEKH-----HGVLILDEAVVAAVELS 386 (852)
T ss_pred ccHHHHHhCe-EEEeCCCCHHHHHHHH----HHHHHhhhhc-----CCCeeCHHHHHHHHHHc
Confidence 4588999995 7899999999999998 4444444332 24789999999999876
No 196
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.07 E-value=38 Score=38.01 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=41.0
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
-|-|..|+. +|.+.+++.++..+|| ..+..+|.+. ..+.++++|++.+++.+
T Consensus 330 d~al~rRf~-~i~v~~p~~~~~~~il----~~~~~~~e~~-----~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 330 DRALSRRFQ-KIDVGEPSIEETVKIL----KGLKEKYEEF-----HHVKYSDEALEAAVELS 381 (731)
T ss_pred hHHHHHhCc-eEEeCCCCHHHHHHHH----HHHHHHHHhc-----cCcccCHHHHHHHHHhh
Confidence 477888997 6899999999999999 4555554322 24789999999999876
No 197
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.90 E-value=17 Score=42.36 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHh---hccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 267 EGVQQGMLKVSAL---AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 267 edv~~~l~kll~~---a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+++.+++-++... +..-|+||||+|++.. ..|..|||.+|-
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLEE 145 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLEE 145 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHhc
Confidence 4555444443322 2456999999999953 256799999995
No 198
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.75 E-value=71 Score=32.26 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=46.0
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
.+.|.+..|.- ++.|.+++.+++..++ . +.++.+|+ .++++|++.|++.+ +...|.+...+++
T Consensus 150 kl~~~l~sr~~-~v~~~~~~~~~l~~~l----~-------~~~~~~g~--~i~~~al~~l~~~~---~gdlr~~~~~lek 212 (367)
T PRK14970 150 KIIPTILSRCQ-IFDFKRITIKDIKEHL----A-------GIAVKEGI--KFEDDALHIIAQKA---DGALRDALSIFDR 212 (367)
T ss_pred cCCHHHHhcce-eEecCCccHHHHHHHH----H-------HHHHHcCC--CCCHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 34566666664 6889999999988888 2 22233465 57899999999864 2357777777777
Q ss_pred hh
Q psy11091 208 LL 209 (408)
Q Consensus 208 ~L 209 (408)
+.
T Consensus 213 l~ 214 (367)
T PRK14970 213 VV 214 (367)
T ss_pred HH
Confidence 65
No 199
>PLN03025 replication factor C subunit; Provisional
Probab=34.70 E-value=17 Score=36.26 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=20.5
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
..-||+|||+|++... .|..|++++|
T Consensus 99 ~~kviiiDE~d~lt~~-------------aq~aL~~~lE 124 (319)
T PLN03025 99 RHKIVILDEADSMTSG-------------AQQALRRTME 124 (319)
T ss_pred CeEEEEEechhhcCHH-------------HHHHHHHHHh
Confidence 3569999999998532 3778999888
No 200
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=34.46 E-value=50 Score=36.94 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred CCccccccC--CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRF--PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRL--d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+-|-+..|| -.++.+++++.++...|| +++++.++ |.++++++++||+..- --.|.|..+|.
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL-----------~kka~~r~--l~l~~eVi~yLa~r~~---rnvR~LegaL~ 490 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAIL-----------RKKAVQEQ--LNAPPEVLEFIASRIS---RNIRELEGALI 490 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHH-----------HHHHHhcC--CCCCHHHHHHHHHhcc---CCHHHHHHHHH
Confidence 567788999 558899999999999999 22333444 6778999999999753 23677877777
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
++..
T Consensus 491 rL~a 494 (617)
T PRK14086 491 RVTA 494 (617)
T ss_pred HHHH
Confidence 7653
No 201
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=34.40 E-value=26 Score=27.81 Aligned_cols=49 Identities=6% Similarity=0.169 Sum_probs=33.5
Q ss_pred hcCCCccccccCCceeecCC--------CCHHHHHhhcccchHHHHHHHHHHhccCCceEE
Q psy11091 126 DFGMIPEFVGRFPILVPFHS--------LNQELLVRILTEPKNAMIQQYQILFTMDKVDLT 178 (408)
Q Consensus 126 k~Gf~PEFlgRLd~IV~F~p--------Ls~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ 178 (408)
..-|.|+-+|++.+.+.+.. -+.++..++| ...+.+++..|...|+.+.
T Consensus 16 ~l~L~p~~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L----~~~~~~L~~~L~~~G~~~~ 72 (85)
T PF02120_consen 16 SLQLDPPELGSVEVKLRLQGGNLSVQFTAENPETKELL----RQNLPELKERLQAQGLEVV 72 (85)
T ss_dssp EE--SSGGG--EEEEEEEETTEEEEEEE--SSHHHHHH----HHTHHHHHHHHHTTT-EEE
T ss_pred EEEEcccccCcEEEEEEEeCCEEEEEEEECCHHHHHHH----HHHHHHHHHHHHHCCCCeE
Confidence 45589999999999887776 3455677777 6677889999999998765
No 202
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=34.19 E-value=15 Score=37.49 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||.+..
T Consensus 228 ~~~~a~~gtl~ldei~~l~~ 247 (441)
T PRK10365 228 RFVEADGGTLFLDEIGDISP 247 (441)
T ss_pred ceeECCCCEEEEeccccCCH
Confidence 46788999999999999864
No 203
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=33.85 E-value=1.5e+02 Score=28.02 Aligned_cols=36 Identities=39% Similarity=0.771 Sum_probs=19.3
Q ss_pred eeEEEEcCCcceeeeecCCcceeEEEeCCceeEEeecc
Q psy11091 350 GYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYP 387 (408)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (408)
|-+-|-|.+++-.-|.||+ |--.++||| |-+=-+||
T Consensus 46 g~v~Y~ya~~~T~~tt~pd-G~ev~~Fpn-gQ~E~h~p 81 (179)
T PF07202_consen 46 GRVIYYYADAQTTHTTYPD-GLEVYEFPN-GQIEKHYP 81 (179)
T ss_pred CcEEEEEeCCCEEEEEcCC-CcEEEEeCC-CceEEEcC
Confidence 4455556565555566665 445556655 44444444
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=33.80 E-value=14 Score=37.88 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||++..
T Consensus 232 ~~~~a~~gtl~ld~i~~l~~ 251 (457)
T PRK11361 232 LFERANEGTLLLDEIGEMPL 251 (457)
T ss_pred ceEECCCCEEEEechhhCCH
Confidence 57788999999999999864
No 205
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=33.64 E-value=54 Score=29.47 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~ 190 (408)
-.+.+.||... +.+.+|+.++..+.+. +.|... +.+.+++++++.|...
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~-----------~~~~~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLK-----------ELFKEL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHH-----------HHHHCC-------HHHHHHHHHH
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHH-----------HHHHHh-hcccCCHHHHHHHHHH
Confidence 34679999999 9999999999988882 223333 4446688888888765
No 206
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.41 E-value=33 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
..-|+|||||-..-+. -|-.|||.||--+|..
T Consensus 104 r~tiLflDEIHRfnK~-------------QQD~lLp~vE~G~iil 135 (436)
T COG2256 104 RRTILFLDEIHRFNKA-------------QQDALLPHVENGTIIL 135 (436)
T ss_pred CceEEEEehhhhcChh-------------hhhhhhhhhcCCeEEE
Confidence 4679999999665432 3557999999776643
No 207
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=33.35 E-value=23 Score=36.44 Aligned_cols=34 Identities=15% Similarity=-0.062 Sum_probs=24.0
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccc-cceeeeCC
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST-SYLFYRYP 327 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e-g~~v~~~~ 327 (408)
+.+|+++||||..- .-||-.|+.++| +-.+..+.
T Consensus 134 ~g~illlDEin~a~-------------p~~~~~L~~lLE~~~~l~i~~ 168 (327)
T TIGR01650 134 HNVALCFDEYDAGR-------------PDVMFVIQRVLEAGGKLTLLD 168 (327)
T ss_pred CCeEEEechhhccC-------------HHHHHHHHHHhccCCeEEECC
Confidence 34559999999652 226778999999 45666665
No 208
>KOG0735|consensus
Probab=33.28 E-value=39 Score=38.80 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred cCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhh
Q psy11091 136 RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSM 213 (408)
Q Consensus 136 RLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l 213 (408)
+++.++.+.++...+-.+||+ -++ ++.+ +..+.+-++.++.+ -.+|-|+.|--.++|.+.+..
T Consensus 563 ~Fq~~~~L~ap~~~~R~~IL~----~~~---s~~~------~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~ 625 (952)
T KOG0735|consen 563 LFQIVIALPAPAVTRRKEILT----TIF---SKNL------SDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAF 625 (952)
T ss_pred ceEEEEecCCcchhHHHHHHH----HHH---Hhhh------hhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHH
Confidence 788899999999999999993 222 2222 22233444555443 367788888777777777666
No 209
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=33.14 E-value=34 Score=34.03 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHhh-ccceEEeecccccc
Q psy11091 267 EGVQQGMLKVSALA-AFGIVFLDEVDKIG 294 (408)
Q Consensus 267 edv~~~l~kll~~a-~~Givfideidki~ 294 (408)
+++-+.+.+.+... +.-||+|||+|.++
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 34444455555433 45689999999998
No 210
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=45 Score=37.14 Aligned_cols=90 Identities=23% Similarity=0.369 Sum_probs=58.1
Q ss_pred ccCCcchhHHHHHHHhhhhhhccCCCCCce--EEEEeccccc------cccCccccccccchhhhcccCCCCcceecccc
Q psy11091 193 EKKTGARGLRAIMESLLLDSMYEVPGSDIL--MVHITEDTVL------KNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDV 264 (408)
Q Consensus 193 d~~~GAR~LrriIe~~L~d~l~d~pg~~~~--~V~Id~~~V~------~~~~p~~~RGIvfldE~dkia~~~~~~~tRDV 264 (408)
.|++|..-|.+.+.-...-|-|...+++-- .|-+-++-|+ ++..| -|+||||+|.+.++.+... --
T Consensus 191 pPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP----~IIFIDEiDAvGr~Rg~g~--Gg 264 (596)
T COG0465 191 PPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP----CIIFIDEIDAVGRQRGAGL--GG 264 (596)
T ss_pred CCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC----CeEEEehhhhcccccCCCC--CC
Confidence 456788888888888888888887776532 3333444442 33344 3679999999988766541 22
Q ss_pred CcchHHHHHHHHHHhh-----ccceEEee
Q psy11091 265 GGEGVQQGMLKVSALA-----AFGIVFLD 288 (408)
Q Consensus 265 ~gedv~~~l~kll~~a-----~~Givfid 288 (408)
|-+.-||-|-.||..- +.|||+|.
T Consensus 265 gnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 265 GNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred CchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 3445666777777652 56787753
No 211
>KOG0651|consensus
Probab=32.75 E-value=17 Score=37.91 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
+++ || --.++.++..-| +--|+||||||-|..+..+. .-++-.=|||-|.-|+.
T Consensus 205 kyi-GE-saRlIRemf~yA~~~~pciifmdeiDAigGRr~se--~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 205 KYI-GE-SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE--GTSSDREIQRTLMELLN 261 (388)
T ss_pred hhc-cc-HHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc--ccchhHHHHHHHHHHHH
Confidence 344 53 344556665544 66999999999999764322 23566779999887776
No 212
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=32.53 E-value=1.3e+02 Score=31.13 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=26.2
Q ss_pred ChhhHhhhhhhhhc-CCeEeeCCCCCCCCCCCceeEeeCCce
Q psy11091 12 ETLVHMWKLLCMLE-GTIVNVPEKNSPRKLRGEMVQVDTTNI 52 (408)
Q Consensus 12 SGEGVQQaLLKiLE-Gt~V~Vp~~gg~Rk~~~e~i~IDTsNI 52 (408)
.-..||.+|+.+|| +..+.+++.+..=+.+..+..|=|.|-
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 34579999999999 678999765431112234555555553
No 213
>KOG0652|consensus
Probab=32.15 E-value=18 Score=37.03 Aligned_cols=134 Identities=21% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhc----------cCCcc
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALE----------KKTGA 198 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d----------~~~GA 198 (408)
+.+|+=.|+-...+=...+ ++...|= -+=+|++++.+ -|.|.++. .+..-+.|.. |++|-
T Consensus 149 LP~eyDsrVkaMevDekPt-E~YsDiG-----GldkQIqELvE--AiVLpmth--~ekF~~lgi~pPKGvLmYGPPGTGK 218 (424)
T KOG0652|consen 149 LPSEYDSRVKAMEVDEKPT-EQYSDIG-----GLDKQIQELVE--AIVLPMTH--KEKFENLGIRPPKGVLMYGPPGTGK 218 (424)
T ss_pred CChhhhhhcceeeeccCCc-ccccccc-----cHHHHHHHHHH--Hhcccccc--HHHHHhcCCCCCCceEeeCCCCCcH
Confidence 5677777766665533322 2233332 12334444322 23333332 3333444433 35565
Q ss_pred hhHHHHHHHhhhhhhccCCCC--------CceEEEEeccccccccCccccccccchhhhcccCCCC-cceeccccCcchH
Q psy11091 199 RGLRAIMESLLLDSMYEVPGS--------DILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVP-GIHQLRDVGGEGV 269 (408)
Q Consensus 199 R~LrriIe~~L~d~l~d~pg~--------~~~~V~Id~~~V~~~~~p~~~RGIvfldE~dkia~~~-~~~~tRDV~gedv 269 (408)
--|.|.....-....-.+.+. ++.+++=|+-.+.+.+.|. |+||||.|.|..+- ..+.++|- .|
T Consensus 219 TlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~----IIFIDElDAIGtKRfDSek~GDR---EV 291 (424)
T KOG0652|consen 219 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPT----IIFIDELDAIGTKRFDSEKAGDR---EV 291 (424)
T ss_pred HHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCe----EEEEechhhhccccccccccccH---HH
Confidence 555555544433333344332 3334444444445556665 45999999987653 35555554 89
Q ss_pred HHHHHHHHHh
Q psy11091 270 QQGMLKVSAL 279 (408)
Q Consensus 270 ~~~l~kll~~ 279 (408)
|.-+++||..
T Consensus 292 QRTMLELLNQ 301 (424)
T KOG0652|consen 292 QRTMLELLNQ 301 (424)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 214
>PRK13530 arsenate reductase; Provisional
Probab=31.98 E-value=23 Score=31.28 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=11.6
Q ss_pred eeCCceeEEecCCC
Q psy11091 47 VDTTNILFVASGAY 60 (408)
Q Consensus 47 IDTsNILFI~~GAF 60 (408)
|+..+|||||.|.-
T Consensus 1 ~~~~~vLFvC~~N~ 14 (133)
T PRK13530 1 MNKKTIYFLCTGNS 14 (133)
T ss_pred CCCCEEEEEcCCch
Confidence 35789999999984
No 215
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=31.78 E-value=50 Score=33.04 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=31.1
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCc
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTN 51 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsN 51 (408)
..=+|.+||.+|+...|+++.... -+.+..++.|.|+|
T Consensus 125 ~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT~N 162 (329)
T COG0714 125 PPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIATQN 162 (329)
T ss_pred CHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEccC
Confidence 356899999999999999986553 34567788999999
No 216
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.78 E-value=48 Score=35.53 Aligned_cols=72 Identities=25% Similarity=0.435 Sum_probs=47.7
Q ss_pred HHHhhhccchhhh---------hcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHH
Q psy11091 113 DAFLKQVEARDLI---------DFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEA 183 (408)
Q Consensus 113 ~~~L~~v~~eDLi---------k~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~A 183 (408)
+.+|..++...++ .|-+-|-++.|.- |.+|+||+.+++.++|+ .+++.. ..-| .+..+.++++|
T Consensus 122 D~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~---ra~~~~-~rgl--~~~~~~i~~~a 194 (436)
T COG2256 122 DALLPHVENGTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLK---RALLDE-ERGL--GGQIIVLDEEA 194 (436)
T ss_pred hhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHH---HHHhhh-hcCC--CcccccCCHHH
Confidence 3455555554443 3446677788875 77899999999999993 222222 2222 23456689999
Q ss_pred HHHHHHHh
Q psy11091 184 LQAIARLA 191 (408)
Q Consensus 184 l~~IA~~a 191 (408)
++.|++.+
T Consensus 195 ~~~l~~~s 202 (436)
T COG2256 195 LDYLVRLS 202 (436)
T ss_pred HHHHHHhc
Confidence 99999875
No 217
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=31.20 E-value=49 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=17.0
Q ss_pred cchHHHHH--HHHHHhh-cc-ceEEeecccc
Q psy11091 266 GEGVQQGM--LKVSALA-AF-GIVFLDEVDK 292 (408)
Q Consensus 266 gedv~~~l--~kll~~a-~~-Givfideidk 292 (408)
|.+.++.+ +-++..+ .. ++++|||+|-
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~ 268 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPEN 268 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSST
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcC
Confidence 67788773 3333333 33 9999999873
No 218
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.48 E-value=68 Score=34.87 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.+-+..|. .++.|++++.+++..++ ... ++.+| +.++++|++.|++.+ +-..|-+-+.+++.
T Consensus 171 I~~tI~SRc-~~~ef~~ls~~el~~~L----~~i-------~~~eg--i~ie~eAL~~Ia~~s---~GslR~al~~Ldka 233 (507)
T PRK06645 171 IPATIISRC-QRYDLRRLSFEEIFKLL----EYI-------TKQEN--LKTDIEALRIIAYKS---EGSARDAVSILDQA 233 (507)
T ss_pred hhHHHHhcc-eEEEccCCCHHHHHHHH----HHH-------HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 445567777 57889999999998888 232 33445 457999999999965 34677777777776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 234 i~ 235 (507)
T PRK06645 234 AS 235 (507)
T ss_pred HH
Confidence 53
No 219
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.39 E-value=56 Score=37.07 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=46.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.+-++.|+ .++.|++|+.+++.+.| +..++.+| +.++++|++.||+.+ +-..|..-+.+++.
T Consensus 161 Ip~TIlSRC-q~feFkpLs~eEI~k~L-----------~~Il~kEg--I~id~eAL~~IA~~S---~GdLRdALnLLDQa 223 (702)
T PRK14960 161 LPITVISRC-LQFTLRPLAVDEITKHL-----------GAILEKEQ--IAADQDAIWQIAESA---QGSLRDALSLTDQA 223 (702)
T ss_pred hhHHHHHhh-heeeccCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 345667777 58899999999988887 22233345 568999999999887 34566666666665
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 224 I 224 (702)
T PRK14960 224 I 224 (702)
T ss_pred H
Confidence 5
No 220
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.36 E-value=48 Score=37.64 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=46.0
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.+-+++|+ ..+.|.+|+.+++...| ++.++..| +.++++|++.|++.+- -..|.+.+++++.
T Consensus 162 L~~TIrSRC-~~f~f~~Ls~eeI~~~L-----------~~Il~kEg--i~id~eAL~~Ia~~A~---GslRdAlnLLDqa 224 (709)
T PRK08691 162 VPVTVLSRC-LQFVLRNMTAQQVADHL-----------AHVLDSEK--IAYEPPALQLLGRAAA---GSMRDALSLLDQA 224 (709)
T ss_pred cchHHHHHH-hhhhcCCCCHHHHHHHH-----------HHHHHHcC--CCcCHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 344456676 56678899999988887 23344456 4579999999999873 5577777777776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 225 ia 226 (709)
T PRK08691 225 IA 226 (709)
T ss_pred HH
Confidence 54
No 221
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=30.17 E-value=26 Score=37.78 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|.+||||||.+..
T Consensus 293 ~~e~a~~GtL~LdeI~~L~~ 312 (520)
T PRK10820 293 FFEQANGGSVLLDEIGEMSP 312 (520)
T ss_pred hhhhcCCCEEEEeChhhCCH
Confidence 57789999999999998854
No 222
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=30.14 E-value=76 Score=34.74 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=47.5
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|.- .+.|.+++.+++.+.| +..++..|+ .++++|++.||+.+ +-+.|...+.+++.
T Consensus 162 i~~tI~SRc~-~~~f~~~~~~ei~~~L-----------~~i~~~egi--~i~~~al~~ia~~s---~G~~R~al~~Ldq~ 224 (559)
T PRK05563 162 IPATILSRCQ-RFDFKRISVEDIVERL-----------KYILDKEGI--EYEDEALRLIARAA---EGGMRDALSILDQA 224 (559)
T ss_pred CcHHHHhHhe-EEecCCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5677888875 6789999999988888 222334465 56899999999876 34677777777766
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 225 ~~ 226 (559)
T PRK05563 225 IS 226 (559)
T ss_pred HH
Confidence 54
No 223
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=30.09 E-value=17 Score=39.93 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.9
Q ss_pred HHHhhccceEEeeccccc
Q psy11091 276 VSALAAFGIVFLDEVDKI 293 (408)
Q Consensus 276 ll~~a~~Givfideidki 293 (408)
|+|.|+.|-+|||||--+
T Consensus 335 lfE~A~gGTLFLDEIgem 352 (560)
T COG3829 335 LFELANGGTLFLDEIGEM 352 (560)
T ss_pred ceeeccCCeEEehhhccC
Confidence 678899999999999755
No 224
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.82 E-value=18 Score=39.03 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.4
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..-|+||||+|++... .|.+||+.+|-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEe 145 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEE 145 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhc
Confidence 4569999999999743 25589999995
No 225
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=29.81 E-value=21 Score=38.17 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=16.9
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||++..
T Consensus 285 ~~~~a~~GtL~ldei~~L~~ 304 (534)
T TIGR01817 285 RFELADGGTLFLDEIGEISP 304 (534)
T ss_pred cccccCCCeEEEechhhCCH
Confidence 47788999999999998753
No 226
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=29.49 E-value=88 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=35.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
+.+.+..|.- ++.|.+++.+++.+++ .. .++..|+ .++++|++.|++.+
T Consensus 145 l~~~l~sr~~-~~~~~~l~~~ei~~~l----~~-------~~~~~~~--~i~~~al~~l~~~~ 193 (319)
T PRK00440 145 IIDPIQSRCA-VFRFSPLKKEAVAERL----RY-------IAENEGI--EITDDALEAIYYVS 193 (319)
T ss_pred cchhHHHHhh-eeeeCCCCHHHHHHHH----HH-------HHHHcCC--CCCHHHHHHHHHHc
Confidence 3455666765 5899999999988888 22 2334454 57999999999874
No 227
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=28.38 E-value=20 Score=37.50 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 266 GEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 266 gedv~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
-++|.+++-++-... ..-||||||+|++... -|-.||+.+|.
T Consensus 99 i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LEe 143 (394)
T PRK07940 99 VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVEE 143 (394)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhhc
Confidence 344554443333222 4459999999999543 23469999986
No 228
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.35 E-value=74 Score=34.99 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=46.7
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|. .++.|++|+.+++.+.| .. .++.+| +.++++|++.||+.+- -..|.+-..+++.
T Consensus 162 il~tI~SRc-~~~~f~~Ls~~eI~~~L----~~-------il~~eg--i~~e~~Al~~Ia~~s~---GdlR~alnlLek~ 224 (546)
T PRK14957 162 IPVTILSRC-IQLHLKHISQADIKDQL----KI-------ILAKEN--INSDEQSLEYIAYHAK---GSLRDALSLLDQA 224 (546)
T ss_pred hhhhHHHhe-eeEEeCCCCHHHHHHHH----HH-------HHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 444577787 68899999999988887 22 223345 4679999999999873 3377777777776
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 225 i 225 (546)
T PRK14957 225 I 225 (546)
T ss_pred H
Confidence 5
No 229
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=27.86 E-value=47 Score=28.88 Aligned_cols=20 Identities=55% Similarity=1.233 Sum_probs=11.7
Q ss_pred CCceeEEEEeCCcee-EEEEc
Q psy11091 337 PNTGYIWYRYPNTGY-IWYRY 356 (408)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~~~~ 356 (408)
|..|-|=++||..|+ |||||
T Consensus 78 ~~~~~i~W~YPrgg~GI~yrf 98 (99)
T COG2440 78 PHSGLIQWRYPRGGFGITYRY 98 (99)
T ss_pred CCCcceEEecCCCCcCEEEec
Confidence 444556666666654 66665
No 230
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=27.46 E-value=1.6e+02 Score=30.11 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=65.9
Q ss_pred HHHHHHHHhccCCceEE--------eCHHHHHHHHHHhhc------c-CCcchhHHHHHHHhhhhhhccCCCCCceEEEE
Q psy11091 162 MIQQYQILFTMDKVDLT--------FSPEALQAIARLALE------K-KTGARGLRAIMESLLLDSMYEVPGSDILMVHI 226 (408)
Q Consensus 162 lLkq~~~~f~~~gI~L~--------ft~~Al~~IA~~a~d------~-~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~I 226 (408)
.-+++-+++++.+++|. +|++..+.+..+... | =.||+|-++.-|+ .++-+=.
T Consensus 154 ~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eR------------GVKlIGA 221 (287)
T COG0788 154 AEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYER------------GVKLIGA 221 (287)
T ss_pred HHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhc------------CCeEeee
Confidence 33444555566667665 466666666644432 3 3689998887765 3455556
Q ss_pred eccccccc--cCccccccccchhhhcccCCCCcceeccccCcchHHHHHHHHHHhh
Q psy11091 227 TEDTVLKN--TAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALA 280 (408)
Q Consensus 227 d~~~V~~~--~~p~~~RGIvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~a 280 (408)
|+-+|... ..|.|.+..+.+| -+.+.+....+ |.|||...|....++
T Consensus 222 TAHYVT~dLDeGPIIeQdv~rV~------H~~s~ed~~~~-GrDvE~~VLARAv~~ 270 (287)
T COG0788 222 TAHYVTADLDEGPIIEQDVIRVD------HAYSVEDLVRA-GRDVEKLVLARAVKA 270 (287)
T ss_pred eeeeccCCCCCCCceeeeeeecC------ccCCHHHHHHh-CCcHHHHHHHHHHHH
Confidence 66666544 5688888888887 55566777777 889999887765544
No 231
>PRK15115 response regulator GlrR; Provisional
Probab=27.35 E-value=21 Score=36.66 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.2
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||.+..
T Consensus 223 ~~~~a~~gtl~l~~i~~l~~ 242 (444)
T PRK15115 223 LFQAAEGGTLFLDEIGDMPA 242 (444)
T ss_pred cEEECCCCEEEEEccccCCH
Confidence 57788999999999998764
No 232
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=27.12 E-value=29 Score=37.15 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|.+||||||.+..
T Consensus 276 ~~~~a~gGtL~ldeI~~L~~ 295 (509)
T PRK05022 276 KFELADGGTLFLDEIGELPL 295 (509)
T ss_pred chhhcCCCEEEecChhhCCH
Confidence 46789999999999999864
No 233
>KOG0257|consensus
Probab=26.95 E-value=2.3e+02 Score=30.49 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=22.2
Q ss_pred HHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 162 MIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 162 lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
+|+++.++.+.+| .|.++|++.++++-.+.
T Consensus 193 eLe~ia~l~~k~~-~lvisDevYe~~v~d~~ 222 (420)
T KOG0257|consen 193 ELERIAELCKKHG-LLVISDEVYEWLVYDGN 222 (420)
T ss_pred HHHHHHHHHHHCC-EEEEEhhHhHHHhhCCC
Confidence 4555555566677 89999999999886653
No 234
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=26.66 E-value=48 Score=28.82 Aligned_cols=7 Identities=0% Similarity=-0.092 Sum_probs=2.8
Q ss_pred ccccccc
Q psy11091 315 LKVSTSY 321 (408)
Q Consensus 315 l~~~eg~ 321 (408)
+|++--+
T Consensus 41 ~~l~~aC 47 (99)
T COG2440 41 KPLIKAC 47 (99)
T ss_pred hhhhhcC
Confidence 3444433
No 235
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.41 E-value=29 Score=38.63 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhhccc---eEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 267 EGVQQGMLKVSALAAFG---IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 267 edv~~~l~kll~~a~~G---ivfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
++|.+++-.+......| |++|||+|.+.... |..||+.+|
T Consensus 107 d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a-------------~NaLLKtLE 149 (618)
T PRK14951 107 DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA-------------FNAMLKTLE 149 (618)
T ss_pred HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH-------------HHHHHHhcc
No 236
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=26.33 E-value=34 Score=30.75 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=22.9
Q ss_pred hhcCCCccccccCCceeecCCCCHHHHHhhc
Q psy11091 125 IDFGMIPEFVGRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 125 ik~Gf~PEFlgRLd~IV~F~pLs~e~L~~IL 155 (408)
....+..+...++|.||.+.+-...++..+.
T Consensus 65 ~~k~i~~~~~~~~DlIitmd~~~~~~~~~~~ 95 (139)
T COG0394 65 RSKQLTEEDFDEFDLIITMDESNAADLCPLA 95 (139)
T ss_pred cCccCchhhhhhCCEEEEeChHHHhhHhhcC
Confidence 3344666667788999999888877777776
No 237
>KOG0734|consensus
Probab=26.28 E-value=35 Score=38.07 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=57.3
Q ss_pred cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEec--cccc------cccCccccccccchhhhcccCCCCcceeccccC
Q psy11091 194 KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITE--DTVL------KNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVG 265 (408)
Q Consensus 194 ~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~--~~V~------~~~~p~~~RGIvfldE~dkia~~~~~~~tRDV~ 265 (408)
|++|---|.|.+--.-.=|.|-+.|++-+.+.|-. .-|. .+..|- |+||||+|.+..+-+....-+.
T Consensus 346 PGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APc----IIFIDEiDavG~kR~~~~~~y~- 420 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPC----IIFIDEIDAVGGKRNPSDQHYA- 420 (752)
T ss_pred CCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCe----EEEEechhhhcccCCccHHHHH-
Confidence 46777777777777777777777776555444432 2222 233444 5699999997554332111133
Q ss_pred cchHHHHHHHHHHh-hccceEEe------eccccccccCC
Q psy11091 266 GEGVQQGMLKVSAL-AAFGIVFL------DEVDKIGAVPG 298 (408)
Q Consensus 266 gedv~~~l~kll~~-a~~Givfi------deidki~~~~~ 298 (408)
-+-+.|.|-+|=-- -+.|||+| |-.||-..+++
T Consensus 421 kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPG 460 (752)
T KOG0734|consen 421 KQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPG 460 (752)
T ss_pred HHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCC
Confidence 33344444443110 17799987 67787776654
No 238
>PRK04195 replication factor C large subunit; Provisional
Probab=26.12 E-value=1.1e+02 Score=32.54 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCc-cccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 129 MIP-EFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 129 f~P-EFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
+.+ .+.+| -.+|.|.+++.+++..+| ... +..+|+ .+++++++.|++.+- ..||.+|..
T Consensus 143 ~~~k~Lrsr-~~~I~f~~~~~~~i~~~L----~~i-------~~~egi--~i~~eaL~~Ia~~s~------GDlR~ain~ 202 (482)
T PRK04195 143 PSLRELRNA-CLMIEFKRLSTRSIVPVL----KRI-------CRKEGI--ECDDEALKEIAERSG------GDLRSAIND 202 (482)
T ss_pred cchhhHhcc-ceEEEecCCCHHHHHHHH----HHH-------HHHcCC--CCCHHHHHHHHHHcC------CCHHHHHHH
Confidence 344 44444 457899999999888888 222 233465 478999999999752 467777765
Q ss_pred h
Q psy11091 208 L 208 (408)
Q Consensus 208 ~ 208 (408)
+
T Consensus 203 L 203 (482)
T PRK04195 203 L 203 (482)
T ss_pred H
Confidence 4
No 239
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=25.79 E-value=53 Score=26.52 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=14.2
Q ss_pred HHHhhccceEEeeccccc
Q psy11091 276 VSALAAFGIVFLDEVDKI 293 (408)
Q Consensus 276 ll~~a~~Givfideidki 293 (408)
+...++.++++|||+|.+
T Consensus 79 ~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred hhccCCCeEEEEeChhhh
Confidence 334457899999999987
No 240
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=51 Score=37.65 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.4
Q ss_pred eccccCcchHHHHHHHHHHh-hccceEEeecccccccc
Q psy11091 260 QLRDVGGEGVQQGMLKVSAL-AAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 260 ~tRDV~gedv~~~l~kll~~-a~~Givfideidki~~~ 296 (408)
+--|+ |-+-..++..|-.+ ..+=.+.||||||+.+.
T Consensus 396 RRTYI-GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss 432 (782)
T COG0466 396 RRTYI-GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS 432 (782)
T ss_pred ccccc-ccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence 33377 77888888888654 37888999999999986
No 241
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=25.49 E-value=49 Score=33.00 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=13.0
Q ss_pred ccceEEeeccccccc
Q psy11091 281 AFGIVFLDEVDKIGA 295 (408)
Q Consensus 281 ~~Givfideidki~~ 295 (408)
..+++||||||++..
T Consensus 102 ~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 102 EGDVLFIDEIHRLSP 116 (328)
T ss_pred cCCEEEEecHhhcch
Confidence 678999999999864
No 242
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=25.43 E-value=28 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=23.6
Q ss_pred hHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCce
Q psy11091 15 VHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNI 52 (408)
Q Consensus 15 GVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNI 52 (408)
-+|.|||.+|+...|++. |...+.+..++.|=|.|=
T Consensus 77 ktQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 77 KTQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp HHHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-T
T ss_pred HHHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCc
Confidence 589999999999999983 322333556666666664
No 243
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.33 E-value=42 Score=38.65 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=31.9
Q ss_pred ccccchhhhcccCCCCcceeccccCcchHHHHHHHHHHhhccceEEe---eccccccc
Q psy11091 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFL---DEVDKIGA 295 (408)
Q Consensus 241 RGIvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~~a~~Givfi---deidki~~ 295 (408)
++|++|||++++.. +-+..|+|.||.-...++|| .|+|||..
T Consensus 121 ~KV~IIDEad~lt~-------------~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 121 YKIFIIDEAHMVTP-------------QGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 35788999988532 45779999999876677666 78888764
No 244
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=25.27 E-value=22 Score=36.24 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=29.2
Q ss_pred ccCcchHHHHHHHHHHhhcc---ceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 263 DVGGEGVQQGMLKVSALAAF---GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 263 DV~gedv~~~l~kll~~a~~---Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.++=|.|.++.-++-..++. =||+|||.|++.... |-+|||++|-
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~A-------------aNaLLKtLEE 139 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAA-------------CNALLKTLEE 139 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHH-------------HHHHHHHhhC
Confidence 34445555555555554444 399999999996432 2389999885
No 245
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=25.10 E-value=75 Score=33.60 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=46.7
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.+-+..|+. .++.+++++.+++..|| .. +++..+ +.++++++++||+..- .-+|.|..++.
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL----~~-------~~~~~~--~~l~~ev~~~Ia~~~~---~~~R~L~g~l~ 307 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIA----RK-------MLEIEH--GELPEEVLNFVAENVD---DNLRRLRGAII 307 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHH----HH-------HHHhcC--CCCCHHHHHHHHhccc---cCHHHHHHHHH
Confidence 4566667774 47789999999999998 22 222334 5579999999999763 35677877777
Q ss_pred Hhhh
Q psy11091 207 SLLL 210 (408)
Q Consensus 207 ~~L~ 210 (408)
++..
T Consensus 308 ~l~~ 311 (440)
T PRK14088 308 KLLV 311 (440)
T ss_pred HHHH
Confidence 7653
No 246
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=25.01 E-value=57 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=15.4
Q ss_pred CCceeEEecCCCccHHHHHHhhhC
Q psy11091 49 TTNILFVASGAYNGLDRLISRRKN 72 (408)
Q Consensus 49 TsNILFI~~GAF~GL~kiI~~R~~ 72 (408)
.++|.||.|||+ |+++.+.+|.+
T Consensus 97 ~~~i~F~IGG~~-G~~~~~~~~a~ 119 (155)
T PF02590_consen 97 KSDIVFIIGGAD-GLSEEVRKRAD 119 (155)
T ss_dssp S-EEEEEE-BTT-B--HHHHHH-S
T ss_pred CceEEEEEecCC-CCCHHHHhhcC
Confidence 469999999996 99998887754
No 247
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=24.80 E-value=20 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHhhccceEEeecccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 276 ll~~a~~Givfideidki~ 294 (408)
+++.|+.|.+||||||.+.
T Consensus 227 ~~~~a~~Gtl~l~~i~~l~ 245 (469)
T PRK10923 227 RFEQADGGTLFLDEIGDMP 245 (469)
T ss_pred CeeECCCCEEEEeccccCC
Confidence 4778899999999999654
No 248
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.59 E-value=93 Score=34.91 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=42.5
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
.+-++.|+- ++.|++|+.+++.++|. . .++.+| +++++++++.||+.+- -.+|..-..++++
T Consensus 163 l~TI~SRcq-~i~F~pLs~~eL~~~L~----~-------il~~eg--i~id~eal~lIA~~s~---GdlR~Al~lLeql 224 (624)
T PRK14959 163 PVTIVSRCQ-HFTFTRLSEAGLEAHLT----K-------VLGREG--VDYDPAAVRLIARRAA---GSVRDSMSLLGQV 224 (624)
T ss_pred hHHHHhhhh-ccccCCCCHHHHHHHHH----H-------HHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 344667764 67899999999998882 2 223334 4579999999999773 2256665666654
No 249
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.43 E-value=1.3e+02 Score=32.79 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.+-++.|. .++.|.+++.+++.+.+ ++.++.+|+ .++++|++.|++.+- ...|.+-+.+++.
T Consensus 159 l~~tI~SRc-~~~~f~~l~~~el~~~L-----------~~ia~~Egi--~i~~eAL~lIa~~s~---GslR~alslLdql 221 (491)
T PRK14964 159 IPVTIISRC-QRFDLQKIPTDKLVEHL-----------VDIAKKENI--EHDEESLKLIAENSS---GSMRNALFLLEQA 221 (491)
T ss_pred HHHHHHHhh-eeeecccccHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 334455565 46789999999888887 222334454 689999999999873 4667777777776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
+.
T Consensus 222 i~ 223 (491)
T PRK14964 222 AI 223 (491)
T ss_pred HH
Confidence 53
No 250
>KOG0731|consensus
Probab=24.32 E-value=37 Score=38.90 Aligned_cols=18 Identities=44% Similarity=0.828 Sum_probs=15.3
Q ss_pred ccceEEeeccccccccCC
Q psy11091 281 AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 281 ~~Givfideidki~~~~~ 298 (408)
.--||||||||-|+.+.+
T Consensus 403 aP~iifideida~~~~r~ 420 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRG 420 (774)
T ss_pred CCeEEEeccccccccccc
Confidence 556999999999998763
No 251
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=24.07 E-value=28 Score=36.93 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.8
Q ss_pred HHHhhccceEEeeccccc
Q psy11091 276 VSALAAFGIVFLDEVDKI 293 (408)
Q Consensus 276 ll~~a~~Givfideidki 293 (408)
++|+|+.|++|||||-.+
T Consensus 168 lfe~A~GGtLfLDEI~~L 185 (403)
T COG1221 168 LFEQANGGTLFLDEIHRL 185 (403)
T ss_pred hheecCCCEEehhhhhhC
Confidence 688999999999999654
No 252
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.06 E-value=1.3e+02 Score=32.50 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=44.7
Q ss_pred ccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
+-+..|.- ++.|++++.+++...| ++.++..| +.++++|++.||+.+- ...|.+-+.+++.+
T Consensus 164 ~tI~SRc~-~i~f~~ls~~el~~~L-----------~~i~k~eg--i~id~~al~~La~~s~---G~lr~al~~Ldkl~ 225 (486)
T PRK14953 164 PTILSRCQ-RFIFSKPTKEQIKEYL-----------KRICNEEK--IEYEEKALDLLAQASE---GGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHhce-EEEcCCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 34566664 7889999999988888 22333446 4679999999998643 44777777777765
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.92 E-value=93 Score=33.73 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|. .++.|.+|+.+++.+.+ +..++.+|+ .++++|++.|++.+ +-..|..-+.+++.
T Consensus 162 l~~tI~SRc-~~~~f~~l~~~~i~~~l-----------~~il~~egi--~~~~~al~~ia~~s---~GslR~al~lLdq~ 224 (509)
T PRK14958 162 LPVTVLSRC-LQFHLAQLPPLQIAAHC-----------QHLLKEENV--EFENAALDLLARAA---NGSVRDALSLLDQS 224 (509)
T ss_pred chHHHHHHh-hhhhcCCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 344477777 56789999998887776 333344564 57899999999886 24567777777666
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 225 i 225 (509)
T PRK14958 225 I 225 (509)
T ss_pred H
Confidence 4
No 254
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=23.79 E-value=32 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.5
Q ss_pred HHHhhccceEEeecccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 276 ll~~a~~Givfideidki~ 294 (408)
++|.|+.|..|||||-.+.
T Consensus 230 ~fE~A~GGTLfLDEI~~mp 248 (464)
T COG2204 230 RFEQANGGTLFLDEIGEMP 248 (464)
T ss_pred ceeEcCCceEEeeccccCC
Confidence 7899999999999997653
No 255
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=23.66 E-value=34 Score=34.48 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=17.3
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|.+||||||.+..
T Consensus 95 ~l~~a~gGtL~l~~i~~L~~ 114 (326)
T PRK11608 95 RFERADGGTLFLDELATAPM 114 (326)
T ss_pred chhccCCCeEEeCChhhCCH
Confidence 56889999999999998763
No 256
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=23.40 E-value=35 Score=36.23 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHH---hhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 266 GEGVQQGMLKVSA---LAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 266 gedv~~~l~kll~---~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
-+++.++.-.+-- .+..-||+|||+|++... .|..||+.+|-
T Consensus 103 id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lEe 147 (451)
T PRK06305 103 IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLEE 147 (451)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhhc
Confidence 3555554433332 257889999999999632 36689999885
No 257
>KOG2227|consensus
Probab=23.26 E-value=1.6e+02 Score=32.29 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=41.6
Q ss_pred CceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhh
Q psy11091 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLL 210 (408)
Q Consensus 138 d~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~ 210 (408)
|.+++|.|-+++++.+|| ++++.+.- ...|-+.|++.+|++-...----|-+=.+.++.++
T Consensus 317 P~~l~F~PYTk~qI~~Il-----------~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 317 PKLLVFPPYTKDQIVEIL-----------QQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred CceeeecCCCHHHHHHHH-----------HHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 668999999999999999 22333222 44455589999999876655555655555554443
No 258
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=23.22 E-value=42 Score=38.08 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=22.3
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
..+|+||||||.+... .|..||+++|...+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g~I 138 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENGTI 138 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCceE
Confidence 4579999999987532 36789998886543
No 259
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=23.21 E-value=43 Score=27.68 Aligned_cols=12 Identities=58% Similarity=1.021 Sum_probs=6.9
Q ss_pred ceeeEEecCCcc
Q psy11091 389 TGYLWYRYPNTG 400 (408)
Q Consensus 389 ~~~~~~~~~~~~ 400 (408)
.||.|||-|-||
T Consensus 26 k~Yy~Yr~P~tG 37 (75)
T PF09003_consen 26 KGYYQYRNPITG 37 (75)
T ss_dssp -SEEEEE-TTTS
T ss_pred eeEEEEecCCCC
Confidence 366667777666
No 260
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=23.06 E-value=28 Score=35.91 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|.+||||||.+..
T Consensus 223 ~~~~a~~gtl~l~ei~~l~~ 242 (463)
T TIGR01818 223 RFEQADGGTLFLDEIGDMPL 242 (463)
T ss_pred cEEECCCCeEEEEchhhCCH
Confidence 56778899999999997754
No 261
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=23.06 E-value=2.4e+02 Score=23.26 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred ccCCCCChhhHhhhhhhhhcCC--eEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCC
Q psy11091 6 CVAPDVETLVHMWKLLCMLEGT--IVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGA 80 (408)
Q Consensus 6 ~~~RDVSGEGVQQaLLKiLEGt--~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga 80 (408)
++.-|-|-|=|++++=.-|.+. .+++.+..| ..+.|-++.|-+|=-|+= .++.+||+.
T Consensus 15 ~ies~~s~dev~~~v~~Al~~~~~~l~LtD~kG------r~~lVp~~~iaYVeiG~~-----------~~r~VGF~~ 74 (74)
T PF11305_consen 15 VIESDQSADEVEAAVTDALADGSGVLTLTDEKG------RRVLVPAASIAYVEIGSE-----------EKRRVGFGT 74 (74)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCceEEEEeCCC------CEEEEECCcEEEEEEcCC-----------CCCccCCCC
Confidence 4556778888999998888887 566655544 567899999999998882 357889973
No 262
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=23.00 E-value=59 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHhhccceEEeec
Q psy11091 267 EGVQQGMLKVSALAAFGIVFLDE 289 (408)
Q Consensus 267 edv~~~l~kll~~a~~Givfide 289 (408)
|++++.+.+|++.-+.|||||+|
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite 52 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITE 52 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcH
Confidence 78999999999888999999987
No 263
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=23.00 E-value=1e+02 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.5
Q ss_pred eEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhh
Q psy11091 176 DLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSM 213 (408)
Q Consensus 176 ~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l 213 (408)
++.++++++..||..|...-.|..++...+.+.+.+.+
T Consensus 4 ~i~Is~~Vi~~Ia~~a~~~v~GV~~~~~~~~~~~~~~~ 41 (108)
T PF03780_consen 4 SITISDRVIAKIAAKAAAEVEGVVGVSGRFADGISDRL 41 (108)
T ss_pred cEEECHHHHHHHHHHHHHhcCCcccccccccccchhcc
Confidence 78999999999999999999999888776444444433
No 264
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.99 E-value=1.1e+02 Score=34.15 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=45.9
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
..+.|-+..|.- ++.|.+++.+++.+.| ++.++.+| +.++++|++.||+.+ +...|.+.+.++
T Consensus 162 ~kIl~tI~SRc~-iv~f~~ls~~ei~~~L-----------~~ia~~eg--i~i~~~al~~La~~s---~gdlr~al~~Le 224 (614)
T PRK14971 162 HKILPTILSRCQ-IFDFNRIQVADIVNHL-----------QYVASKEG--ITAEPEALNVIAQKA---DGGMRDALSIFD 224 (614)
T ss_pred hhchHHHHhhhh-eeecCCCCHHHHHHHH-----------HHHHHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 346677788874 6899999999998887 22333446 468899999999887 344566656665
Q ss_pred Hh
Q psy11091 207 SL 208 (408)
Q Consensus 207 ~~ 208 (408)
++
T Consensus 225 kl 226 (614)
T PRK14971 225 QV 226 (614)
T ss_pred HH
Confidence 54
No 265
>KOG2170|consensus
Probab=22.54 E-value=65 Score=33.50 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHhhccceEEeeccccccc
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfideidki~~ 295 (408)
-++++..+..-+.++++-|.+.||+||+-+
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 567777788888888999999999999864
No 266
>PRK10126 tyrosine phosphatase; Provisional
Probab=22.49 E-value=42 Score=29.89 Aligned_cols=29 Identities=7% Similarity=0.180 Sum_probs=16.7
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhc
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~IL 155 (408)
.-+.+|.+...|.|+++..=..+++.+..
T Consensus 66 r~lt~~~~~~~DlIl~Md~~~~~~l~~~~ 94 (147)
T PRK10126 66 RQISRRLCRNYDLILTMEKRHIERLCEMA 94 (147)
T ss_pred ccCCHHHhccCCEEEECCHHHHHHHHHhc
Confidence 33556666777888877643334444443
No 267
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=22.48 E-value=31 Score=38.20 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.3
Q ss_pred HHHhhccceEEeecccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 276 ll~~a~~Givfideidki~ 294 (408)
++++|+.|++||||||.+.
T Consensus 212 ~L~~AngGtL~Ldei~~L~ 230 (608)
T TIGR00764 212 AIHRAHKGVLYIDEIKTMP 230 (608)
T ss_pred ceEECCCCEEEEEChHhCC
Confidence 6889999999999999876
No 268
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.20 E-value=1.1e+02 Score=25.86 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=25.3
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCC
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGA 59 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GA 59 (408)
-..||++|+.+||...+.++..+. ........ ....|..||++..
T Consensus 78 ~~~v~~~L~~ll~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ii~t~N 122 (139)
T PF07728_consen 78 PPEVLESLLSLLEERRIQLPEGGE-EIKEPNND-LASPNFRIIATMN 122 (139)
T ss_dssp -HHHHHTTHHHHSSSEEEE-TSSS-EEE--TT-------EEEEEEES
T ss_pred CHHHHHHHHHHHhhCcccccCCCc-EEecCccc-ccccceEEEEEEc
Confidence 378999999999999999875443 11000000 1122577777766
No 269
>KOG0728|consensus
Probab=22.03 E-value=59 Score=33.31 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=25.1
Q ss_pred cccchhhhcccCCCCc-ceeccccCcchHHHHHHHHHHh
Q psy11091 242 GIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKVSAL 279 (408)
Q Consensus 242 GIvfldE~dkia~~~~-~~~tRDV~gedv~~~l~kll~~ 279 (408)
.|+|+||+|-|...-. ....+ --+||.-+++||..
T Consensus 242 siifmdeidsigs~r~e~~~gg---dsevqrtmlellnq 277 (404)
T KOG0728|consen 242 SIIFMDEIDSIGSSRVESGSGG---DSEVQRTMLELLNQ 277 (404)
T ss_pred ceEeeecccccccccccCCCCc---cHHHHHHHHHHHHh
Confidence 3679999999876533 22223 34899999999875
No 270
>PF13173 AAA_14: AAA domain
Probab=22.01 E-value=61 Score=27.62 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhccceEEeeccccccc
Q psy11091 269 VQQGMLKVSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 269 v~~~l~kll~~a~~Givfideidki~~ 295 (408)
+.+.+.+... .+..+||||||.++..
T Consensus 50 ~~~~~~~~~~-~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 50 LLEYFLELIK-PGKKYIFIDEIQYLPD 75 (128)
T ss_pred hHHHHHHhhc-cCCcEEEEehhhhhcc
Confidence 3344444421 2678999999998853
No 271
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.38 E-value=1.5e+02 Score=31.49 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|.- ++.|++|+++++.+.| ... ++..| +.++++|++.|++.+- -..|-+-..+++.
T Consensus 164 l~~tI~sRc~-~v~f~~l~~~el~~~L----~~~-------~~~eg--~~i~~~al~~L~~~s~---gdlr~a~~~Lekl 226 (451)
T PRK06305 164 IPGTILSRCQ-KMHLKRIPEETIIDKL----ALI-------AKQEG--IETSREALLPIARAAQ---GSLRDAESLYDYV 226 (451)
T ss_pred cchHHHHhce-EEeCCCCCHHHHHHHH----HHH-------HHHcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 5566777775 6899999999998888 222 22345 4469999999998873 2345555555554
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 227 ~ 227 (451)
T PRK06305 227 V 227 (451)
T ss_pred H
Confidence 3
No 272
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=21.28 E-value=51 Score=36.62 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=16.9
Q ss_pred HHHhhccceEEeeccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 276 ll~~a~~Givfideidki~~ 295 (408)
+++.|+.|++||||||.+..
T Consensus 465 ~le~a~~GtL~Ldei~~L~~ 484 (686)
T PRK15429 465 RFELADKSSLFLDEVGDMPL 484 (686)
T ss_pred HHHhcCCCeEEEechhhCCH
Confidence 46889999999999997643
No 273
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=21.27 E-value=48 Score=29.63 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=16.0
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhc
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~IL 155 (408)
..+.+|.+...|.|++...=..+++.++.
T Consensus 66 ~~lt~~~~~~~DlIl~M~~~~~~~l~~~~ 94 (144)
T PRK11391 66 RKLTAEMARNYDLILAMESEHIAQVTAIA 94 (144)
T ss_pred CcCCHHHHhhCCEEEECCHHHHHHHHHHC
Confidence 34556666666777766543444444443
No 274
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.08 E-value=66 Score=31.30 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=13.0
Q ss_pred ccceEEeeccccccc
Q psy11091 281 AFGIVFLDEVDKIGA 295 (408)
Q Consensus 281 ~~Givfideidki~~ 295 (408)
+.+|+||||||++..
T Consensus 81 ~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 81 EGDVLFIDEIHRLSP 95 (305)
T ss_pred cCCEEEEehHhhhCH
Confidence 568999999999864
No 275
>KOG0733|consensus
Probab=20.92 E-value=70 Score=36.29 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=25.7
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
.|| || =|.++.-+..+| +--+||.||||-++.+.+
T Consensus 584 kYV-GE-SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 584 KYV-GE-SERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred HHh-hh-HHHHHHHHHHHhhcCCCeEEEecchhhcCcccC
Confidence 356 53 356666666666 678999999999998754
No 276
>CHL00206 ycf2 Ycf2; Provisional
Probab=20.84 E-value=70 Score=40.57 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccceEEeecccccccc
Q psy11091 271 QGMLKVSALAAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 271 ~~l~kll~~a~~Givfideidki~~~ 296 (408)
..+.+++.+..--||||||||.|+..
T Consensus 1722 r~lFelARk~SPCIIFIDEIDaL~~~ 1747 (2281)
T CHL00206 1722 TLQFELAKAMSPCIIWIPNIHDLNVN 1747 (2281)
T ss_pred HHHHHHHHHCCCeEEEEEchhhcCCC
No 277
>KOG3707|consensus
Probab=20.57 E-value=68 Score=36.21 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
..-||+-|+|+-++.+|+=.-.+..++ .+-++.+... + ...++.|.+.+
T Consensus 149 ~a~dfLP~~Pv~~~iepWWr~~~g~~l----e~d~k~Lse~---E-------~~~iD~l~d~~----------------- 197 (844)
T KOG3707|consen 149 IAKDFLPTLPVDFPIEPWWRVCLGNFL----EEDFKKLSED---E-------MATIDKLCDEE----------------- 197 (844)
T ss_pred chHHhccCCCcCccccchhhhhhhhhh----HHHHHhcCHH---H-------HHHHHHHHhcC-----------------
Confidence 446899999999999998888888888 3333322111 0 01122222211
Q ss_pred hhhhhccCCCCCceEEEEeccccccccCccccccccchhhhcc------cCCCCcceeccccCcchHHHHHHHHH
Q psy11091 209 LLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDK------IGAVPGIHQLRDVGGEGVQQGMLKVS 277 (408)
Q Consensus 209 L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~~RGIvfldE~dk------ia~~~~~~~tRDV~gedv~~~l~kll 277 (408)
....-..|.++|++ .|-||.+|+|..=. +++-.++---| |.|+=.|..|+|.-
T Consensus 198 -----------A~pagl~d~~Vv~s----LY~rGLiYfDVPvy~~Dri~v~pL~gFvmNR-v~gDyfEtLLYkIF 256 (844)
T KOG3707|consen 198 -----------ANPAGLFDPEVVKS----LYQRGLIYFDVPVYQDDRIKVSPLEGFVMNR-VYGDYFETLLYKIF 256 (844)
T ss_pred -----------CCcccccCHHHHHH----HHHCCeEEEecccccCCeeeecchhhhhhhc-ccccHHHHHHHHHe
Confidence 11223445566654 45667777665432 44445553345 88988999999984
No 278
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=20.48 E-value=2.5e+02 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=14.1
Q ss_pred ccccccCCceeecCCCCHHHHHhhc
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRIL 155 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~IL 155 (408)
|-...|. .++.|.+++.+++...|
T Consensus 138 ~TI~SRc-~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 138 DTIKSRC-QIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhhc-eeeeCCCcCHHHHHHHH
Confidence 3334444 36667777777766665
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=67 Score=33.96 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
+..+..+.+.| +.+|+|+||+|.++..... ........|...|+..+.|..
T Consensus 62 ~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~ 115 (494)
T COG0464 62 ELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK 115 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEeechhhhcccCccc--cccchhhHHHHHHHHhccccc
Confidence 44444554444 5589999999999987543 233445556666666666554
No 280
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=20.02 E-value=1.5e+02 Score=32.74 Aligned_cols=65 Identities=18% Similarity=0.355 Sum_probs=46.2
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
.+.|-+..|. .++.|.+|+.+++.+.+ +..++..|+ .++++|++.||+.+- -..|.+-..+++
T Consensus 159 kL~~tI~SRc-~~~~F~~Ls~~ei~~~L-----------~~Il~~EGi--~i~~~Al~~Ia~~s~---GdlR~alnlLdq 221 (535)
T PRK08451 159 KLPATILSRT-QHFRFKQIPQNSIISHL-----------KTILEKEGV--SYEPEALEILARSGN---GSLRDTLTLLDQ 221 (535)
T ss_pred hCchHHHhhc-eeEEcCCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 3567788886 58899999998888877 233344564 579999999999864 345555555655
Q ss_pred hh
Q psy11091 208 LL 209 (408)
Q Consensus 208 ~L 209 (408)
.+
T Consensus 222 ai 223 (535)
T PRK08451 222 AI 223 (535)
T ss_pred HH
Confidence 44
Done!