Query psy11091
Match_columns 408
No_of_seqs 420 out of 2445
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:43:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g41_A Heat shock protein HSLU 100.0 1.7E-33 5.9E-38 289.0 9.8 161 7-239 269-434 (444)
2 3hws_A ATP-dependent CLP prote 100.0 3.2E-32 1.1E-36 266.5 11.5 214 6-240 136-351 (363)
3 1um8_A ATP-dependent CLP prote 99.9 6.5E-27 2.2E-31 229.6 11.8 212 6-241 157-368 (376)
4 1r6b_X CLPA protein; AAA+, N-t 99.5 1.5E-13 5.2E-18 146.6 11.4 162 14-229 571-736 (758)
5 3pxi_A Negative regulator of g 99.4 1.2E-12 4.2E-17 140.2 10.6 150 13-229 592-745 (758)
6 1ofh_A ATP-dependent HSL prote 99.4 1.3E-12 4.4E-17 122.1 9.1 154 8-233 136-294 (310)
7 1qvr_A CLPB protein; coiled co 99.3 3.1E-12 1.1E-16 139.3 12.0 163 14-229 674-840 (854)
8 4fcw_A Chaperone protein CLPB; 99.3 1.1E-11 3.9E-16 116.5 12.1 164 13-229 132-299 (311)
9 1g41_A Heat shock protein HSLU 98.9 4E-10 1.4E-14 116.0 2.8 61 262-325 233-293 (444)
10 3m6a_A ATP-dependent protease 98.2 1.3E-06 4.3E-11 91.1 6.3 99 129-232 237-335 (543)
11 3hws_A ATP-dependent CLP prote 97.7 4.3E-06 1.5E-10 81.5 -1.3 67 266-332 94-168 (363)
12 1um8_A ATP-dependent CLP prote 97.4 3E-05 1E-09 75.8 0.9 67 266-332 115-189 (376)
13 3syl_A Protein CBBX; photosynt 96.7 0.0025 8.5E-08 59.6 6.5 72 130-214 188-264 (309)
14 1ofh_A ATP-dependent HSL prote 96.1 0.0011 3.6E-08 61.5 0.6 44 281-325 116-159 (310)
15 3pfi_A Holliday junction ATP-d 95.8 0.017 6E-07 54.7 7.6 66 129-210 167-232 (338)
16 2bjv_A PSP operon transcriptio 95.7 0.011 3.7E-07 54.4 5.3 74 128-210 160-238 (265)
17 1g8p_A Magnesium-chelatase 38 95.5 0.018 6.1E-07 54.4 6.3 83 129-211 201-301 (350)
18 1hqc_A RUVB; extended AAA-ATPa 95.5 0.099 3.4E-06 48.8 11.3 66 129-210 151-216 (324)
19 3dzd_A Transcriptional regulat 94.9 0.023 7.8E-07 56.2 5.0 75 128-210 282-359 (368)
20 3t15_A Ribulose bisphosphate c 94.5 0.0096 3.3E-07 56.7 1.1 54 270-323 81-141 (293)
21 1ojl_A Transcriptional regulat 94.0 0.11 3.7E-06 49.8 7.4 74 129-210 157-233 (304)
22 1r6b_X CLPA protein; AAA+, N-t 93.9 0.16 5.6E-06 54.0 9.3 52 130-191 334-385 (758)
23 1qzm_A ATP-dependent protease 93.6 0.19 6.4E-06 41.5 7.1 83 147-233 4-87 (94)
24 1ny5_A Transcriptional regulat 92.9 0.18 6.3E-06 49.9 7.1 75 128-210 291-368 (387)
25 3syl_A Protein CBBX; photosynt 90.2 0.1 3.5E-06 48.5 1.9 47 271-321 120-166 (309)
26 3f9v_A Minichromosome maintena 88.2 0.13 4.5E-06 54.1 1.2 41 276-329 386-426 (595)
27 3vfd_A Spastin; ATPase, microt 86.4 0.2 7E-06 49.0 1.2 47 273-321 199-245 (389)
28 3n70_A Transport activator; si 85.3 0.41 1.4E-05 40.2 2.5 23 273-295 68-90 (145)
29 3eie_A Vacuolar protein sortin 85.1 0.35 1.2E-05 46.1 2.2 50 270-321 96-148 (322)
30 4fcw_A Chaperone protein CLPB; 84.5 0.28 9.7E-06 45.4 1.2 41 271-324 109-149 (311)
31 3pvs_A Replication-associated 84.0 0.9 3.1E-05 46.1 4.7 92 127-232 147-238 (447)
32 3b9p_A CG5977-PA, isoform A; A 83.8 0.36 1.2E-05 44.7 1.6 52 268-321 100-151 (297)
33 3uk6_A RUVB-like 2; hexameric 83.6 1.1 3.9E-05 42.4 5.1 69 128-212 242-310 (368)
34 3k1j_A LON protease, ATP-depen 83.3 0.33 1.1E-05 50.8 1.2 56 129-192 267-328 (604)
35 2chg_A Replication factor C sm 83.1 1.4 4.9E-05 37.3 5.0 65 129-210 145-209 (226)
36 3u61_B DNA polymerase accessor 82.7 1.5 5E-05 41.2 5.3 71 129-209 149-220 (324)
37 3d8b_A Fidgetin-like protein 1 82.6 0.29 1E-05 47.6 0.4 46 274-321 169-214 (357)
38 3co5_A Putative two-component 82.3 0.66 2.2E-05 38.9 2.5 35 273-320 67-101 (143)
39 3f9v_A Minichromosome maintena 82.2 0.97 3.3E-05 47.6 4.2 22 14-35 405-426 (595)
40 1g8p_A Magnesium-chelatase 38 82.0 0.39 1.3E-05 45.2 1.1 39 276-327 139-177 (350)
41 1l8q_A Chromosomal replication 81.5 0.95 3.3E-05 42.7 3.6 66 128-211 147-214 (324)
42 3te6_A Regulatory protein SIR3 80.7 0.36 1.2E-05 47.3 0.3 95 134-232 185-309 (318)
43 4b4t_J 26S protease regulatory 80.2 0.78 2.7E-05 46.7 2.6 34 263-298 222-258 (405)
44 2r62_A Cell division protease 79.9 1.1 3.7E-05 40.8 3.2 40 281-320 103-144 (268)
45 2qz4_A Paraplegin; AAA+, SPG7, 79.6 0.7 2.4E-05 41.5 1.9 28 270-297 84-114 (262)
46 3m6a_A ATP-dependent protease 78.1 0.86 2.9E-05 47.3 2.2 40 273-321 165-206 (543)
47 3bos_A Putative DNA replicatio 77.9 1.3 4.5E-05 38.6 3.0 67 130-212 156-224 (242)
48 3f8t_A Predicted ATPase involv 77.8 0.57 1.9E-05 49.1 0.7 37 277-326 296-332 (506)
49 1xwi_A SKD1 protein; VPS4B, AA 77.6 0.83 2.8E-05 43.9 1.8 43 276-320 100-142 (322)
50 3h4m_A Proteasome-activating n 77.1 0.9 3.1E-05 41.6 1.8 38 280-319 109-146 (285)
51 3cf0_A Transitional endoplasmi 77.1 0.82 2.8E-05 43.1 1.6 40 281-320 108-148 (301)
52 2zan_A Vacuolar protein sortin 76.9 1 3.5E-05 45.3 2.4 47 273-321 219-265 (444)
53 3dzd_A Transcriptional regulat 76.1 0.61 2.1E-05 45.9 0.4 34 276-322 217-250 (368)
54 4b4t_I 26S protease regulatory 75.8 1.2 4.1E-05 45.8 2.5 35 262-298 255-292 (437)
55 2ce7_A Cell division protein F 75.7 0.61 2.1E-05 48.1 0.3 48 273-320 97-148 (476)
56 3hu3_A Transitional endoplasmi 75.7 0.54 1.8E-05 48.4 -0.1 50 269-320 282-334 (489)
57 3pvs_A Replication-associated 75.1 1.3 4.6E-05 44.8 2.6 31 280-323 105-135 (447)
58 2qp9_X Vacuolar protein sortin 74.0 0.88 3E-05 44.3 0.9 42 277-320 139-180 (355)
59 1njg_A DNA polymerase III subu 73.8 5.1 0.00018 34.1 5.7 64 129-209 169-232 (250)
60 2bjv_A PSP operon transcriptio 73.7 1.4 4.9E-05 40.1 2.2 34 276-322 95-128 (265)
61 1iqp_A RFCS; clamp loader, ext 72.9 4.9 0.00017 36.9 5.7 64 129-209 153-216 (327)
62 2chq_A Replication factor C sm 72.3 5 0.00017 36.7 5.6 64 129-209 145-208 (319)
63 1ojl_A Transcriptional regulat 71.4 1.6 5.6E-05 41.5 2.1 34 275-321 90-123 (304)
64 1sxj_E Activator 1 40 kDa subu 70.1 4 0.00014 38.4 4.5 65 129-210 177-242 (354)
65 2r44_A Uncharacterized protein 69.9 5.1 0.00017 37.6 5.2 77 128-208 167-273 (331)
66 1d2n_A N-ethylmaleimide-sensit 68.1 1.4 4.8E-05 40.4 0.8 38 280-320 123-160 (272)
67 3pfi_A Holliday junction ATP-d 67.2 1.5 5.2E-05 41.2 0.8 32 279-323 104-135 (338)
68 3k1j_A LON protease, ATP-depen 66.7 1.3 4.4E-05 46.3 0.3 45 269-326 189-233 (604)
69 3pxi_A Negative regulator of g 66.4 3.8 0.00013 43.8 3.8 39 272-323 570-608 (758)
70 2c9o_A RUVB-like 1; hexameric 66.0 4.1 0.00014 40.8 3.8 26 273-298 112-143 (456)
71 4b4t_L 26S protease subunit RP 65.9 2.2 7.6E-05 43.6 1.8 29 270-298 260-291 (437)
72 3cf2_A TER ATPase, transitiona 64.3 4.7 0.00016 44.4 4.1 31 268-298 281-314 (806)
73 2qby_B CDC6 homolog 3, cell di 64.2 4.4 0.00015 38.3 3.4 73 129-212 180-252 (384)
74 1jr3_A DNA polymerase III subu 63.7 7.1 0.00024 36.7 4.8 64 129-209 162-225 (373)
75 2v1u_A Cell division control p 63.2 3.2 0.00011 39.0 2.2 74 128-212 182-256 (387)
76 1jbk_A CLPB protein; beta barr 63.1 5.7 0.00019 32.7 3.6 34 282-320 116-149 (195)
77 1sxj_B Activator 1 37 kDa subu 62.9 8.3 0.00028 35.3 5.0 64 129-209 150-213 (323)
78 1ny5_A Transcriptional regulat 62.4 3.2 0.00011 40.9 2.2 19 276-294 226-244 (387)
79 2qp9_X Vacuolar protein sortin 62.3 10 0.00034 36.7 5.7 73 129-216 200-272 (355)
80 4b4t_H 26S protease regulatory 62.3 3.4 0.00012 42.8 2.5 29 270-298 288-319 (467)
81 3cf2_A TER ATPase, transitiona 61.1 4 0.00014 44.9 2.8 35 262-298 550-587 (806)
82 4b4t_K 26S protease regulatory 60.3 3.6 0.00012 41.9 2.2 34 263-298 246-282 (428)
83 1o6d_A Hypothetical UPF0247 pr 59.9 8.9 0.0003 34.4 4.4 28 128-155 106-134 (163)
84 1fnn_A CDC6P, cell division co 59.8 3.9 0.00013 38.5 2.2 73 129-212 175-254 (389)
85 1xwi_A SKD1 protein; VPS4B, AA 59.6 11 0.00036 36.0 5.3 73 129-216 162-234 (322)
86 1to0_A Hypothetical UPF0247 pr 59.6 5 0.00017 36.1 2.7 20 50-70 101-120 (167)
87 4b4t_M 26S protease regulatory 58.7 6 0.0002 40.4 3.5 29 270-298 260-291 (434)
88 2z4s_A Chromosomal replication 57.7 4.5 0.00015 40.6 2.4 68 129-212 244-313 (440)
89 3d8b_A Fidgetin-like protein 1 57.6 14 0.00049 35.6 5.8 74 129-217 234-307 (357)
90 2zan_A Vacuolar protein sortin 57.2 15 0.00053 36.7 6.2 73 129-216 284-356 (444)
91 1sxj_D Activator 1 41 kDa subu 54.8 13 0.00043 34.6 4.8 64 129-209 176-239 (353)
92 1ypw_A Transitional endoplasmi 54.1 1.8 6.3E-05 47.1 -1.3 50 272-321 558-611 (806)
93 3b9p_A CG5977-PA, isoform A; A 53.4 16 0.00053 33.5 5.1 74 129-217 172-245 (297)
94 4fak_A Ribosomal RNA large sub 51.9 7 0.00024 35.1 2.4 20 50-70 105-124 (163)
95 1in4_A RUVB, holliday junction 51.2 19 0.00066 34.2 5.5 66 129-210 163-228 (334)
96 3vfd_A Spastin; ATPase, microt 50.8 25 0.00086 34.0 6.4 74 129-217 265-338 (389)
97 2p65_A Hypothetical protein PF 48.7 11 0.00038 31.1 3.0 35 282-320 116-150 (187)
98 2qby_A CDC6 homolog 1, cell di 48.6 13 0.00045 34.6 3.8 71 129-210 179-250 (386)
99 1ns5_A Hypothetical protein YB 48.3 7.9 0.00027 34.4 2.1 22 48-70 94-115 (155)
100 3eie_A Vacuolar protein sortin 48.2 19 0.00067 33.9 5.0 73 129-216 167-239 (322)
101 1hqc_A RUVB; extended AAA-ATPa 47.5 8.7 0.0003 35.5 2.4 32 280-324 89-120 (324)
102 1lv7_A FTSH; alpha/beta domain 45.6 5.4 0.00018 36.0 0.6 51 270-320 90-144 (257)
103 2r44_A Uncharacterized protein 45.1 4.7 0.00016 37.8 0.1 31 282-325 110-140 (331)
104 2c9o_A RUVB-like 1; hexameric 44.1 16 0.00056 36.4 3.9 64 129-208 350-413 (456)
105 3nbx_X ATPase RAVA; AAA+ ATPas 42.0 6.2 0.00021 40.8 0.5 32 281-325 109-140 (500)
106 3uk6_A RUVB-like 2; hexameric 41.3 14 0.00047 34.8 2.7 13 282-294 190-202 (368)
107 1jf8_A Arsenate reductase; ptp 40.6 8.5 0.00029 32.5 1.0 12 49-60 3-14 (131)
108 2gno_A DNA polymerase III, gam 40.1 5.6 0.00019 38.1 -0.2 27 281-320 82-108 (305)
109 2chg_A Replication factor C sm 39.5 16 0.00055 30.7 2.6 28 280-320 101-128 (226)
110 1qvr_A CLPB protein; coiled co 37.7 51 0.0017 35.7 6.8 55 127-191 314-368 (854)
111 3t15_A Ribulose bisphosphate c 36.8 11 0.00039 35.3 1.4 37 242-278 101-137 (293)
112 2rrl_A FLIK, flagellar HOOK-le 35.2 22 0.00074 32.2 2.9 48 127-178 91-146 (169)
113 2qz4_A Paraplegin; AAA+, SPG7, 34.7 39 0.0013 29.8 4.5 68 130-212 159-229 (262)
114 1jl3_A Arsenate reductase; alp 34.5 12 0.00041 31.7 1.0 11 50-60 4-14 (139)
115 1jr3_D DNA polymerase III, del 34.4 47 0.0016 31.2 5.3 64 130-210 127-190 (343)
116 2chq_A Replication factor C sm 32.9 13 0.00045 33.8 1.0 28 280-320 101-128 (319)
117 2v1u_A Cell division control p 31.5 28 0.00096 32.4 3.1 13 284-296 133-145 (387)
118 1ypw_A Transitional endoplasmi 29.3 17 0.00058 39.5 1.3 50 269-320 282-334 (806)
119 1sxj_C Activator 1 40 kDa subu 28.7 46 0.0016 31.3 4.1 50 128-191 152-201 (340)
120 2qby_B CDC6 homolog 3, cell di 28.5 30 0.001 32.5 2.7 13 284-296 136-148 (384)
121 3te6_A Regulatory protein SIR3 27.9 28 0.00095 33.9 2.5 25 270-294 116-145 (318)
122 3u61_B DNA polymerase accessor 27.7 26 0.0009 32.5 2.2 28 281-320 105-132 (324)
123 1y1l_A Arsenate reductase (ARS 27.0 21 0.00072 29.6 1.3 10 51-60 1-10 (124)
124 1d1q_A Tyrosine phosphatase (E 26.8 16 0.00056 31.7 0.5 12 49-60 7-18 (161)
125 4etm_A LMPTP, low molecular we 26.3 22 0.00074 31.6 1.3 10 51-60 20-29 (173)
126 3aon_B V-type sodium ATPase su 26.1 33 0.0011 28.8 2.3 23 266-289 30-52 (115)
127 2ov6_A V-type ATP synthase sub 25.6 44 0.0015 27.1 2.9 29 265-295 28-56 (101)
128 2wmy_A WZB, putative acid phos 25.3 25 0.00084 30.3 1.4 11 50-60 9-19 (150)
129 1sxj_A Activator 1 95 kDa subu 25.3 58 0.002 33.0 4.4 58 135-208 198-255 (516)
130 4egs_A Ribose 5-phosphate isom 24.9 24 0.00081 31.5 1.3 13 48-60 33-45 (180)
131 3cf0_A Transitional endoplasmi 24.9 98 0.0033 28.7 5.6 71 129-215 167-239 (301)
132 2cwd_A Low molecular weight ph 24.4 23 0.00078 30.8 1.0 11 50-60 5-15 (161)
133 1p8a_A Protein tyrosine phosph 24.2 26 0.0009 29.8 1.3 11 50-60 5-15 (146)
134 2i4r_A V-type ATP synthase sub 23.7 40 0.0014 27.7 2.3 29 266-296 38-66 (102)
135 1u2p_A Ptpase, low molecular w 23.7 26 0.0009 30.4 1.3 11 50-60 5-15 (163)
136 3n8i_A Low molecular weight ph 23.6 24 0.00083 30.8 1.0 13 48-60 4-16 (157)
137 2d00_A V-type ATP synthase sub 23.1 52 0.0018 27.2 2.9 24 266-289 31-54 (109)
138 2gi4_A Possible phosphotyrosin 23.0 27 0.00093 30.3 1.2 31 126-156 71-101 (156)
139 2l17_A Synarsc, arsenate reduc 22.8 27 0.00091 29.5 1.1 19 125-143 64-82 (134)
140 2wja_A Putative acid phosphata 22.2 30 0.001 30.6 1.4 11 50-60 27-37 (168)
141 2dhr_A FTSH; AAA+ protein, hex 21.9 44 0.0015 34.5 2.7 27 271-297 110-139 (499)
142 3f8t_A Predicted ATPase involv 21.9 50 0.0017 34.6 3.1 62 128-192 362-428 (506)
143 2fek_A Low molecular weight pr 21.2 33 0.0011 30.3 1.4 11 50-60 23-33 (167)
144 3nbx_X ATPase RAVA; AAA+ ATPas 20.7 1.2E+02 0.0042 31.1 5.8 75 129-207 165-261 (500)
145 3rh0_A Arsenate reductase; oxi 20.5 35 0.0012 29.6 1.4 12 49-60 20-31 (148)
146 1w5s_A Origin recognition comp 20.3 65 0.0022 30.4 3.4 68 131-209 200-270 (412)
No 1
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=1.7e-33 Score=289.02 Aligned_cols=161 Identities=32% Similarity=0.492 Sum_probs=146.1
Q ss_pred cCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCcc
Q psy11091 7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESA 86 (408)
Q Consensus 7 ~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~ 86 (408)
.++|||+|||||+|||+|||+.+++ + ++.+||+||||||+|||.- .
T Consensus 269 ~~~D~s~egvq~aLL~~le~~~~~~--~---------~~~~d~~~ilfI~~gaf~~--------------------~--- 314 (444)
T 1g41_A 269 SGADVSREGVQRDLLPLVEGSTVST--K---------HGMVKTDHILFIASGAFQV--------------------A--- 314 (444)
T ss_dssp SSSHHHHHHHHHHHHHHHHCCEEEE--T---------TEEEECTTCEEEEEECCSS--------------------C---
T ss_pred CCCCchHHHHHHHHHHHhccccccc--c---------cceecCCcEEEEecccccc--------------------C---
Confidence 6899999999999999999999998 2 2589999999999999952 0
Q ss_pred chhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHH
Q psy11091 87 GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQY 166 (408)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~ 166 (408)
.|.| ++|||+||||.+|.|++|+++++.+|+++|++++++||
T Consensus 315 ---------------------------------~~~d-----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~ 356 (444)
T 1g41_A 315 ---------------------------------RPSD-----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQY 356 (444)
T ss_dssp ---------------------------------CGGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHH
T ss_pred ---------------------------------Chhh-----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 0113 78999999999999999999999999999999999999
Q ss_pred HHHhccCCceEEeCHHHHHHHHHHhhc-----cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCccc
Q psy11091 167 QILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY 239 (408)
Q Consensus 167 ~~~f~~~gI~L~ft~~Al~~IA~~a~d-----~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~ 239 (408)
+++|..+|++|+|+++|+++||+.|++ +++|||+|+++|++++.+.+|++|+.+.+.|+||+++|.+...|.+
T Consensus 357 ~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 357 KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred HHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 999999999999999999999999887 8999999999999999999999998777999999999987655543
No 2
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.97 E-value=3.2e-32 Score=266.53 Aligned_cols=214 Identities=44% Similarity=0.749 Sum_probs=169.9
Q ss_pred ccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCC-CccCCCCCCCC
Q psy11091 6 CVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNE-KYLGFGAPSTE 84 (408)
Q Consensus 6 ~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k-~sIGFga~~~~ 84 (408)
.+++|+|+++||++||++|||..+.+++.+++.....+.+.|.|+|++|||+|+|.||+++|++|+++ .++||+.....
T Consensus 136 ~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~ 215 (363)
T 3hws_A 136 SITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA 215 (363)
T ss_dssp ---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----------
T ss_pred ccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccc
Confidence 35788999999999999999999999888774344667889999999999999999999999999987 89999875421
Q ss_pred ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ 164 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk 164 (408)
. .+.....++++.+.++|+.+++|+|||++|||.++.|.||+.+++.+|+..+.+.+++
T Consensus 216 ~---------------------~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~ 274 (363)
T 3hws_A 216 K---------------------SDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTK 274 (363)
T ss_dssp -----------------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred c---------------------ccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0012345678899999999999999999999999999999999999999766677999
Q ss_pred HHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCCC-CceEEEEeccccccccCcccc
Q psy11091 165 QYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGS-DILMVHITEDTVLKNTAPSYI 240 (408)
Q Consensus 165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg~-~~~~V~Id~~~V~~~~~p~~~ 240 (408)
++++.+...++.+.++++|+++|++.+++..+|||.|+++|++.+.++++++|+. +.+.+.||++.|.+...|.++
T Consensus 275 ~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~~~~~~ 351 (363)
T 3hws_A 275 QYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLI 351 (363)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCSCCEEE
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcCCceee
Confidence 9999999999999999999999999999999999999999999999999999985 569999999999999877765
No 3
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.94 E-value=6.5e-27 Score=229.57 Aligned_cols=212 Identities=44% Similarity=0.763 Sum_probs=172.1
Q ss_pred ccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCc
Q psy11091 6 CVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTES 85 (408)
Q Consensus 6 ~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~ 85 (408)
.+.+|++++++|++||++||+..+++|..++....+.+.+.|+|+|++|||+|+|.+|+..+.+|.....+||.++....
T Consensus 157 ~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~ 236 (376)
T 1um8_A 157 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK 236 (376)
T ss_dssp -------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT
T ss_pred ceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc
Confidence 45789999999999999999999999988874445678889999999999999999999999999988889998753210
Q ss_pred cchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHH
Q psy11091 86 AGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQ 165 (408)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq 165 (408)
.....+++.+.++++.+++|.|||++||+.++.|.||+.+++.+|+.++.+.++++
T Consensus 237 ------------------------~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~ 292 (376)
T 1um8_A 237 ------------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQ 292 (376)
T ss_dssp ------------------------TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHH
T ss_pred ------------------------cchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHH
Confidence 01123566788999999999999999999999999999999999998887899999
Q ss_pred HHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCccccc
Q psy11091 166 YQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241 (408)
Q Consensus 166 ~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~~R 241 (408)
+.++++..+..+.|+++|+++|++.++++..|||.|+++|++.+.++++++++.+...++||++.|....+|.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 368 (376)
T 1um8_A 293 YQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 368 (376)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred HHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCceeec
Confidence 9999988999999999999999999999999999999999999999999999877789999999999988887763
No 4
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=1.5e-13 Score=146.64 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=121.8
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
..||+.||++||...++.. .| ..+|.+|++||++..- |.+.++ +..+||......
T Consensus 571 ~~~~~~Ll~~le~~~~~~~--~g--------~~~~~~~~~iI~tsN~-~~~~~~-----~~~~g~~~~~~~--------- 625 (758)
T 1r6b_X 571 PDVFNILLQVMDNGTLTDN--NG--------RKADFRNVVLVMTTNA-GVRETE-----RKSIGLIHQDNS--------- 625 (758)
T ss_dssp HHHHHHHHHHHHHSEEEET--TT--------EEEECTTEEEEEEECS-SCC-----------------------------
T ss_pred HHHHHHHHHHhcCcEEEcC--CC--------CEEecCCeEEEEecCc-chhhhh-----hcccCccccchH---------
Confidence 4699999999999888863 22 2688899999998874 433333 235777542100
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
... .+.++..|.|+|++|||.+|.|.||+.+++.+|+ ...++++.+++..+
T Consensus 626 ------------------------~~~-~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~----~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 626 ------------------------TDA-MEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQVQLDQK 676 (758)
T ss_dssp --------------------------C-HHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred ------------------------HHH-HHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHH----HHHHHHHHHHHHHC
Confidence 000 1122334999999999999999999999999999 78899999999999
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
++.+.++++|+++|++.++++++|||+|+++|++.+.+++++. .+ ..+..|.|+.+
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 736 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALD 736 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEE
T ss_pred CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEe
Confidence 9999999999999999999999999999999999999988875 22 45677777753
No 5
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-12 Score=140.21 Aligned_cols=150 Identities=21% Similarity=0.289 Sum_probs=116.2
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhh
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAAS 92 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~ 92 (408)
...||+.||++||...++.. +| + +++.+|+.|||+..... .. .
T Consensus 592 ~~~~~~~Ll~~le~g~~~~~--~g-~-------~~~~~~~~iI~ttn~~~----------------~~--~--------- 634 (758)
T 3pxi_A 592 HPDVFNILLQVLEDGRLTDS--KG-R-------TVDFRNTILIMTSNVGA----------------SE--K--------- 634 (758)
T ss_dssp CHHHHHHHHHHHHHSBCC---------------CCBCTTCEEEEEESSST----------------TC--C---------
T ss_pred CHHHHHHHHHHhccCeEEcC--CC-C-------EeccCCeEEEEeCCCCh----------------hh--H---------
Confidence 45899999999998877652 23 1 47778888888766311 00 0
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhcc
Q psy11091 93 LADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTM 172 (408)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~ 172 (408)
.. ..+.++.+|+|+|++|||.+|.|.||+++++.+|+ ...++++.+++..
T Consensus 635 --------------------~~------~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~----~~~l~~~~~~~~~ 684 (758)
T 3pxi_A 635 --------------------DK------VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV----SLMSDQLTKRLKE 684 (758)
T ss_dssp --------------------HH------HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH----HHHHHHHHHHHHT
T ss_pred --------------------HH------HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH----HHHHHHHHHHHHh
Confidence 00 01122334999999999999999999999999999 7889999999998
Q ss_pred CCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 173 DKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 173 ~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
.++.+.++++|+++|++.+|+..+|||+|+++|++.+.+++++. .+ ..+..|.|+.+
T Consensus 685 ~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~ 745 (758)
T 3pxi_A 685 QDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE 745 (758)
T ss_dssp TTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEES
T ss_pred CCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999999976 33 45677777753
No 6
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.36 E-value=1.3e-12 Score=122.08 Aligned_cols=154 Identities=32% Similarity=0.512 Sum_probs=127.4
Q ss_pred CCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccc
Q psy11091 8 APDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAG 87 (408)
Q Consensus 8 ~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~ 87 (408)
..|.+.+++|+.||++||+..+.... + .+++++++||++|.|.. ..
T Consensus 136 ~~~~~~~~~~~~Ll~~le~~~~~~~~--~---------~~~~~~~~~i~~~~~~~--------------------~~--- 181 (310)
T 1ofh_A 136 GADVSREGVQRDLLPLVEGSTVSTKH--G---------MVKTDHILFIASGAFQV--------------------AR--- 181 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHCCEEEETT--E---------EEECTTCEEEEEECCSS--------------------SC---
T ss_pred ccchhHHHHHHHHHHHhcCCeEeccc--c---------cccCCcEEEEEcCCccc--------------------CC---
Confidence 45677889999999999998887631 1 57899999999987631 00
Q ss_pred hhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHH
Q psy11091 88 RRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQ 167 (408)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~ 167 (408)
+. .+.|+|++|++.++.|.+++.+++.+|+.+..+.+++++.
T Consensus 182 ---------------------------------~~-----~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~ 223 (310)
T 1ofh_A 182 ---------------------------------PS-----DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 223 (310)
T ss_dssp ---------------------------------GG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred ---------------------------------cc-----cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHH
Confidence 00 1678999999999999999999999999654457888998
Q ss_pred HHhccCCceEEeCHHHHHHHHHHhhcc-----CCcchhHHHHHHHhhhhhhccCCCCCceEEEEecccccc
Q psy11091 168 ILFTMDKVDLTFSPEALQAIARLALEK-----KTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLK 233 (408)
Q Consensus 168 ~~f~~~gI~L~ft~~Al~~IA~~a~d~-----~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~ 233 (408)
+.+...++.+.++++|+++|++.+... ..++|.|++++++.+....++....+...+.||.+.|..
T Consensus 224 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 294 (310)
T 1ofh_A 224 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVAD 294 (310)
T ss_dssp HHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHH
T ss_pred HHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHH
Confidence 888888999999999999999999764 789999999999999998887766667788899887754
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.34 E-value=3.1e-12 Score=139.27 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=124.5
Q ss_pred hhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhhh
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASL 93 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~~ 93 (408)
..||+.||++||...++- ..+ ..+|.+|++||++... |-+.+.... +++..
T Consensus 674 ~~~~~~Ll~~l~~~~~~~--~~g--------~~vd~~~~iiI~tsn~-~~~~~~~~~------~~~~~------------ 724 (854)
T 1qvr_A 674 PDVFNILLQILDDGRLTD--SHG--------RTVDFRNTVIILTSNL-GSPLILEGL------QKGWP------------ 724 (854)
T ss_dssp HHHHHHHHHHHTTTEECC--SSS--------CCEECTTEEEEEECCT-THHHHHHHH------HTTCC------------
T ss_pred HHHHHHHHHHhccCceEC--CCC--------CEeccCCeEEEEecCc-ChHHHhhhc------ccccc------------
Confidence 579999999999988763 112 2688899999998774 333222100 11100
Q ss_pred hhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccC
Q psy11091 94 ADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173 (408)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~ 173 (408)
..++.+.+ .+..+..|+|||++|||.++.|.||+.+++..|+ ...++++.+++...
T Consensus 725 ------------------~~~l~~~v--~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~----~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 725 ------------------YERIRDEV--FKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIV----EIQLSYLRARLAEK 780 (854)
T ss_dssp ------------------HHHHHHHH--HHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHH----HHHHHHHHHHHHTT
T ss_pred ------------------hHHHHHHH--HHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHH----HHHHHHHHHHHHhC
Confidence 00011111 1223556999999999999999999999999999 88999999999888
Q ss_pred CceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 174 KVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 174 gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
++.+.|+++|+++|++.++++.+|||+|+++|++.+.+++++. .+ ..+..|.|+.+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 840 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG 840 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999886 33 45778888753
No 8
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.30 E-value=1.1e-11 Score=116.48 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=121.6
Q ss_pred hhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCccchhhhh
Q psy11091 13 TLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAAS 92 (408)
Q Consensus 13 GEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~~~~~~~ 92 (408)
...+|++||++||...+... . + ..+|.+|++||++... |-+. |.... |.+...
T Consensus 132 ~~~~~~~Ll~~le~~~~~~~-~-~--------~~~~~~~~iiI~ttn~-~~~~-i~~~~-----~~~~~~---------- 184 (311)
T 4fcw_A 132 HPDVFNILLQMLDDGRLTDS-H-G--------RTVDFRNTVIIMTSNL-GSPL-ILEGL-----QKGWPY---------- 184 (311)
T ss_dssp CHHHHHHHHHHHHHSEEECT-T-S--------CEEECTTEEEEEEEST-THHH-HHTTT-----TSCCCS----------
T ss_pred CHHHHHHHHHHHhcCEEEcC-C-C--------CEEECCCcEEEEeccc-CHHH-HHhhh-----cccccH----------
Confidence 35799999999999887731 1 1 2789999999999885 3232 22211 000000
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhcc
Q psy11091 93 LADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTM 172 (408)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~ 172 (408)
+...+. + ++.....|.|+|++||+.++.|.|++.+++..|+ ...++++.+.+..
T Consensus 185 -----------------~~l~~~---~--~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~----~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 185 -----------------ERIRDE---V--FKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIV----EIQMSYLRARLAE 238 (311)
T ss_dssp -----------------STHHHH---T--HHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH----HHHTHHHHHHHHT
T ss_pred -----------------HHHHHH---H--HHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHH----HHHHHHHHHHHHh
Confidence 000011 1 1112334899999999999999999999999999 7889999999888
Q ss_pred CCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccC--CC--CCceEEEEecc
Q psy11091 173 DKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEV--PG--SDILMVHITED 229 (408)
Q Consensus 173 ~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~--pg--~~~~~V~Id~~ 229 (408)
+++.+.++++|++.|++.+++...|+|.|+++|++.+..++++. .+ ..+..|.|+.+
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~ 299 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG 299 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEEC
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999888765 11 34556666544
No 9
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.89 E-value=4e-10 Score=115.95 Aligned_cols=61 Identities=30% Similarity=0.380 Sum_probs=48.5
Q ss_pred cccCcchHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 262 RDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
+-+..++|.+..++..| ++||+||||||||++++++ .++|+|+||||++|||++||+++++
T Consensus 233 ~l~~~~~~~~~ai~~ae--~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~ 293 (444)
T 1g41_A 233 KLINPEELKQKAIDAVE--QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVST 293 (444)
T ss_dssp SSCCHHHHHHHHHHHHH--HHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HccCHHHHHHHHHHHhc--cCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhccccccc
Confidence 34545555554444333 8999999999999987553 5789999999999999999999998
No 10
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.20 E-value=1.3e-06 Score=91.14 Aligned_cols=99 Identities=12% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
|.|.|+.|++ ++.|.+++.++..+|+. ..+++++.+......-.+.+++++++.|++ .|+...|+|.|++.|+++
T Consensus 237 l~~aL~~R~~-vi~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 237 IPGPLRDRME-IINIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQLAAI 311 (543)
T ss_dssp SCHHHHHHEE-EEECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHHHHHH
T ss_pred CCHHHHhhcc-eeeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHHHHHH
Confidence 6788999995 78999999999999993 455555544433333478999999999998 788889999999999999
Q ss_pred hhhhhccCCCCCceEEEEeccccc
Q psy11091 209 LLDSMYEVPGSDILMVHITEDTVL 232 (408)
Q Consensus 209 L~d~l~d~pg~~~~~V~Id~~~V~ 232 (408)
+......+...+...+.|+.+.+.
T Consensus 312 ~~~aa~~~~~~~~~~~~It~~~l~ 335 (543)
T 3m6a_A 312 CRKAAKAIVAEERKRITVTEKNLQ 335 (543)
T ss_dssp HHHHHHHHHTTCCSCCEECTTTTH
T ss_pred HHHHHHHHHhcCCcceecCHHHHH
Confidence 887665554444566778877664
No 11
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.66 E-value=4.3e-06 Score=81.51 Aligned_cols=67 Identities=37% Similarity=0.487 Sum_probs=43.2
Q ss_pred cchHHHHHHHHH-------HhhccceEEeeccccccccCC-CccccCCCccccccccccccccceeeeCCCCcce
Q psy11091 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKIGAVPG-IHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYL 332 (408)
Q Consensus 266 gedv~~~l~kll-------~~a~~Givfideidki~~~~~-~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~ 332 (408)
|++++..+.+++ +.++.||+||||||++....+ ...+++++++++|..||+++||..+.+|++.|..
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 94 GEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp HHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred cccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 566666666664 445889999999999987633 3346788999999999999999999988877653
No 12
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.40 E-value=3e-05 Score=75.76 Aligned_cols=67 Identities=40% Similarity=0.562 Sum_probs=37.0
Q ss_pred cchHHHHHHHHH-------HhhccceEEeeccccccccC-CCccccCCCccccccccccccccceeeeCCCCcce
Q psy11091 266 GEGVQQGMLKVS-------ALAAFGIVFLDEVDKIGAVP-GIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYL 332 (408)
Q Consensus 266 gedv~~~l~kll-------~~a~~Givfideidki~~~~-~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~~~~ 332 (408)
|++++..+.+++ +.|..|||||||||++.... +.....|++++++|..||+++|+..+.+|+..|..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~ 189 (376)
T 1um8_A 115 GEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRK 189 (376)
T ss_dssp ---CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC--------
T ss_pred CccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccc
Confidence 556666666654 45688999999999998763 33346799999999999999999999888877743
No 13
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.67 E-value=0.0025 Score=59.56 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=57.3
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh----ccCCc-chhHHHH
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL----EKKTG-ARGLRAI 204 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~----d~~~G-AR~Lrri 204 (408)
.|.|..|++.++.|.+++.+++.+|+ ...+++ .+ +.+++++++.|++..- ....| +|.|+++
T Consensus 188 ~~~l~~R~~~~i~~~~~~~~~~~~il----~~~l~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 188 NPGFRSRIAHHIEFPDYSDEELFEIA----GHMLDD-------QN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp STTHHHHEEEEEEECCCCHHHHHHHH----HHHHHH-------TT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred CHHHHHhCCeEEEcCCcCHHHHHHHH----HHHHHH-------cC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 38999999999999999999999999 444443 23 5789999999988643 35566 9999999
Q ss_pred HHHhhhhhhc
Q psy11091 205 MESLLLDSMY 214 (408)
Q Consensus 205 Ie~~L~d~l~ 214 (408)
+++.+.....
T Consensus 255 l~~a~~~~~~ 264 (309)
T 3syl_A 255 LDRARLRQAN 264 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999875443
No 14
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.14 E-value=0.0011 Score=61.54 Aligned_cols=44 Identities=36% Similarity=0.450 Sum_probs=36.4
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
..+||||||||++...... .+.+.+++++|..||+++|+..+..
T Consensus 116 ~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp HHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEec
Confidence 5899999999999876432 3568889999999999999876654
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.85 E-value=0.017 Score=54.71 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.|.+++.+++.+|+ ...++ ..+ +.+++++++.|++.. .--.|-+..++++.
T Consensus 167 l~~~L~~R~~~~i~l~~~~~~e~~~il----~~~~~-------~~~--~~~~~~~~~~l~~~~---~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 167 LSNPLRDRFGMQFRLEFYKDSELALIL----QKAAL-------KLN--KTCEEKAALEIAKRS---RSTPRIALRLLKRV 230 (338)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHH----HHHHH-------HTT--CEECHHHHHHHHHTT---TTCHHHHHHHHHHH
T ss_pred cCHHHHhhcCEEeeCCCcCHHHHHHHH----HHHHH-------hcC--CCCCHHHHHHHHHHH---CcCHHHHHHHHHHH
Confidence 567788899999999999999999988 33222 223 568999999999932 23357787887776
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
..
T Consensus 231 ~~ 232 (338)
T 3pfi_A 231 RD 232 (338)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.71 E-value=0.011 Score=54.45 Aligned_cols=74 Identities=12% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCCccccccCCc-eeecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCce--EEeCHHHHHHHHHHhhccCCcchhHH
Q psy11091 128 GMIPEFVGRFPI-LVPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVD--LTFSPEALQAIARLALEKKTGARGLR 202 (408)
Q Consensus 128 Gf~PEFlgRLd~-IV~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~--L~ft~~Al~~IA~~a~d~~~GAR~Lr 202 (408)
.|.|+|..||+. .+.+.||.+ +++..++ ...++++.+.. +.. ..++++|++.|.+.++ ....|.|+
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~----~~~l~~~~~~~---~~~~~~~~~~~a~~~L~~~~~--~gn~reL~ 230 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMA----EYFAIQMCREI---KLPLFPGFTERARETLLNYRW--PGNIRELK 230 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHH----HHHHHHHHHHT---TCSSCCCBCHHHHHHHHHSCC--TTHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHH----HHHHHHHHHHh---CCCcccCcCHHHHHHHHhCCC--CCCHHHHH
Confidence 378999999975 688999986 7888887 56666665543 333 3789999999987655 35689999
Q ss_pred HHHHHhhh
Q psy11091 203 AIMESLLL 210 (408)
Q Consensus 203 riIe~~L~ 210 (408)
+++++.+.
T Consensus 231 ~~l~~~~~ 238 (265)
T 2bjv_A 231 NVVERSVY 238 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 17
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.54 E-value=0.018 Score=54.42 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=54.1
Q ss_pred CCccccccCCceeecCCC-CHHHHHhhccc-------c---------hHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSL-NQELLVRILTE-------P---------KNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pL-s~e~L~~ILte-------P---------k~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
|.|.|+.||+..+.|.++ +.++..+|+.. | ....+++.-.......-.+.+++++++.|++.+
T Consensus 201 l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~ 280 (350)
T 1g8p_A 201 LRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC 280 (350)
T ss_dssp CCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH
T ss_pred CCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 667888899988999999 46666577732 0 000111111000111123489999999999999
Q ss_pred hccCC-cchhHHHHHHHhhhh
Q psy11091 192 LEKKT-GARGLRAIMESLLLD 211 (408)
Q Consensus 192 ~d~~~-GAR~LrriIe~~L~d 211 (408)
...+. ++|.+..+++....-
T Consensus 281 ~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 281 IALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHSSSCSHHHHHHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHHHH
Confidence 88777 789999888876543
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.52 E-value=0.099 Score=48.82 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
|.|.|..|++.++.|.+++.+++.+++ ... +...+ +.+++++++.|++.+ + --.|-++.++++.
T Consensus 151 ~~~~l~~R~~~~i~l~~~~~~e~~~~l----~~~-------~~~~~--~~~~~~~~~~l~~~~--~-G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 151 ITAPLLSRFGIVEHLEYYTPEELAQGV----MRD-------ARLLG--VRITEEAALEIGRRS--R-GTMRVAKRLFRRV 214 (324)
T ss_dssp CSCSTTTTCSCEEECCCCCHHHHHHHH----HHH-------HHTTT--CCCCHHHHHHHHHHS--C-SCHHHHHHHHHHH
T ss_pred CCHHHHhcccEEEecCCCCHHHHHHHH----HHH-------HHhcC--CCCCHHHHHHHHHHc--c-CCHHHHHHHHHHH
Confidence 567788999999999999999988877 222 22234 358999999999884 2 2347777777666
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
..
T Consensus 215 ~~ 216 (324)
T 1hqc_A 215 RD 216 (324)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 19
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.89 E-value=0.023 Score=56.21 Aligned_cols=75 Identities=9% Similarity=0.275 Sum_probs=62.2
Q ss_pred CCCccccccCCce-eecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 128 GMIPEFVGRFPIL-VPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 128 Gf~PEFlgRLd~I-V~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
.|+++|..||.++ |.+-||.+ +|+..++ +..++++.+.+... ...|+++|++.|.+..+..+. |.|+.+
T Consensus 282 ~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpGNv--reL~n~ 353 (368)
T 3dzd_A 282 NFREDLYYRLSVFQIYLPPLRERGKDVILLA----EYFLKKFAKEYKKN--CFELSEETKEYLMKQEWKGNV--RELKNL 353 (368)
T ss_dssp SSCHHHHHHHTSEEEECCCGGGSTTHHHHHH----HHHHHHHHHHTTCC--CCCBCHHHHHHHHTCCCTTHH--HHHHHH
T ss_pred CccHHHHHHhCCeEEeCCChhhchhhHHHHH----HHHHHHHHHHcCCC--CCCcCHHHHHHHHhCCCCcHH--HHHHHH
Confidence 3899999999986 78999998 8999998 78888888775432 367999999999988776654 999999
Q ss_pred HHHhhh
Q psy11091 205 MESLLL 210 (408)
Q Consensus 205 Ie~~L~ 210 (408)
|++.+.
T Consensus 354 i~~~~~ 359 (368)
T 3dzd_A 354 IERAVI 359 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 20
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.46 E-value=0.0096 Score=56.66 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHHHHHHHHhh-------ccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 270 QQGMLKVSALA-------AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 270 ~~~l~kll~~a-------~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
+..+.++++.| +.+|||||||||++.+.++.....+...-||..||.++++-..
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 141 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 141 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccc
Confidence 34455555555 7899999999999985432222334556799999999986543
No 21
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.00 E-value=0.11 Score=49.79 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=57.7
Q ss_pred CCccccccCCce-eecCCCC--HHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 129 MIPEFVGRFPIL-VPFHSLN--QELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 129 f~PEFlgRLd~I-V~F~pLs--~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
|++.|..||..+ +.+-||. .+|+..++ +..++++...+... ...|+++|++.|++..+. -..|-|+.++
T Consensus 157 fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~----~~~l~~~~~~~~~~--~~~~s~~a~~~L~~~~wp--GnvReL~~~l 228 (304)
T 1ojl_A 157 FRQDLYYRLNVVAIEMPSLRQRREDIPLLA----DHFLRRFAERNRKV--VKGFTPQAMDLLIHYDWP--GNIRELENAI 228 (304)
T ss_dssp SCHHHHHHHSSEEEECCCSGGGGGGHHHHH----HHHHHHHHHHTTCC--CCCBCHHHHHHHHHCCCS--SHHHHHHHHH
T ss_pred cHHHHHhhcCeeEEeccCHHHhHhhHHHHH----HHHHHHHHHHhccC--ccCCCHHHHHHHHcCCCC--CCHHHHHHHH
Confidence 788899999654 7799999 68888888 67777777665432 356899999999987642 3579999999
Q ss_pred HHhhh
Q psy11091 206 ESLLL 210 (408)
Q Consensus 206 e~~L~ 210 (408)
++.+.
T Consensus 229 ~~~~~ 233 (304)
T 1ojl_A 229 ERAVV 233 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.89 E-value=0.16 Score=54.03 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=38.7
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
-|-|..|++ ++.|.+++.++..+|+ ..+.+++... + .+.++++|++.+++.+
T Consensus 334 d~aL~~Rf~-~i~v~~p~~~e~~~il----~~l~~~~~~~---~--~v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 334 DRALARRFQ-KIDITEPSIEETVQII----NGLKPKYEAH---H--DVRYTAKAVRAAVELA 385 (758)
T ss_dssp TTSSGGGEE-EEECCCCCHHHHHHHH----HHHHHHHHHH---H--TCCCCHHHHHHHHHHH
T ss_pred CHHHHhCce-EEEcCCCCHHHHHHHH----HHHHHHHHHh---c--CCCCCHHHHHHHHHHh
Confidence 477999998 6999999999999999 4555554331 2 3457888888887765
No 23
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=93.59 E-value=0.19 Score=41.55 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred CHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCC-CCceEEE
Q psy11091 147 NQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVH 225 (408)
Q Consensus 147 s~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg-~~~~~V~ 225 (408)
++++=.+|... .++=+|+++. ....-.+.|+++|+..|.+. |.+.-|.|.|.|.|.+++.....++-. .+...|.
T Consensus 4 t~~EK~~IAk~--~LiPkql~~~-GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~~~~~v~ 79 (94)
T 1qzm_A 4 TEDEKLNIAKR--HLLPKQIERN-ALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIE 79 (94)
T ss_dssp CHHHHHHHHHH--THHHHHHHHT-TCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCTTCCCEE
T ss_pred CHHHHHHHHHH--hccHHHHHHh-CCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcCCCCCee
Confidence 44555667731 3333443332 23334799999999999987 889999999999999888777666542 3346788
Q ss_pred Eecccccc
Q psy11091 226 ITEDTVLK 233 (408)
Q Consensus 226 Id~~~V~~ 233 (408)
||.+.+..
T Consensus 80 v~~~~l~~ 87 (94)
T 1qzm_A 80 INGDNLHD 87 (94)
T ss_dssp ECTTTTHH
T ss_pred ECHHHHHH
Confidence 99887753
No 24
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.87 E-value=0.18 Score=49.86 Aligned_cols=75 Identities=13% Similarity=0.296 Sum_probs=58.7
Q ss_pred CCCccccccCCce-eecCCCCH--HHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHH
Q psy11091 128 GMIPEFVGRFPIL-VPFHSLNQ--ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAI 204 (408)
Q Consensus 128 Gf~PEFlgRLd~I-V~F~pLs~--e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~Lrri 204 (408)
.|+++|..||..+ +.+-||.+ +|+..++ +..++++.+.+... ...++++|++.|....+ --..|.|+.+
T Consensus 291 ~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~w--pGNvreL~~~ 362 (387)
T 1ny5_A 291 KFREDLYYRLGVIEIEIPPLRERKEDIIPLA----NHFLKKFSRKYAKE--VEGFTKSAQELLLSYPW--YGNVRELKNV 362 (387)
T ss_dssp SSCHHHHHHHTTEEEECCCGGGCHHHHHHHH----HHHHHHHHHHTTCC--CCEECHHHHHHHHHSCC--TTHHHHHHHH
T ss_pred CccHHHHHhhcCCeecCCcchhccccHHHHH----HHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCC--CcHHHHHHHH
Confidence 3889999999764 66778875 8998888 78888887765432 24799999999998665 3458999999
Q ss_pred HHHhhh
Q psy11091 205 MESLLL 210 (408)
Q Consensus 205 Ie~~L~ 210 (408)
|++.+.
T Consensus 363 i~~~~~ 368 (387)
T 1ny5_A 363 IERAVL 368 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.19 E-value=0.1 Score=48.51 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 271 QGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 271 ~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
..+.++++.|..|||||||||+++...+. +-....+|..||.+++..
T Consensus 120 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 120 PKTKEVLKRAMGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN 166 (309)
T ss_dssp HHHHHHHHHHTTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC
Confidence 44567788889999999999999865331 223456889999999864
No 26
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.22 E-value=0.13 Score=54.14 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCCCC
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNT 329 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~~~ 329 (408)
.+..|+.||+|||||||+.. .+|..||.++|.-.++..+.+
T Consensus 386 ~l~~A~~gil~IDEid~l~~-------------~~q~~Ll~~le~~~i~i~~~g 426 (595)
T 3f9v_A 386 ALVLADGGIAVIDEIDKMRD-------------EDRVAIHEAMEQQTVSIAKAG 426 (595)
T ss_dssp HHHHHSSSEECCTTTTCCCS-------------HHHHHHHHHHHSSSEEEESSS
T ss_pred eeEecCCCcEEeehhhhCCH-------------hHhhhhHHHHhCCEEEEecCC
Confidence 35567899999999999742 368899999998887765444
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.36 E-value=0.2 Score=49.02 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 273 MLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 273 l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+.+....++.+||||||||+++..... +..-...-+|..||..++|.
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCC--ccchHHHHHHHHHHHHhhcc
Confidence 344444446699999999999865332 11122355778888888754
No 28
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.32 E-value=0.41 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.9
Q ss_pred HHHHHHhhccceEEeeccccccc
Q psy11091 273 MLKVSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 273 l~kll~~a~~Givfideidki~~ 295 (408)
+..+++.|+.|++||||||++..
T Consensus 68 ~~~~~~~a~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 68 LNDFIALAQGGTLVLSHPEHLTR 90 (145)
T ss_dssp HHHHHHHHTTSCEEEECGGGSCH
T ss_pred hhcHHHHcCCcEEEEcChHHCCH
Confidence 34567888999999999998853
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.13 E-value=0.35 Score=46.11 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+..+..+.+.| +.+||||||||.++...+.. . .-...-+|..||..++|-
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~-~~~~~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-E-SEASRRIKTELLVQMNGV 148 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-c-chHHHHHHHHHHHHhccc
Confidence 34444444444 56999999999998764321 1 122345677788777653
No 30
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.54 E-value=0.28 Score=45.43 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=32.3
Q ss_pred HHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceee
Q psy11091 271 QGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFY 324 (408)
Q Consensus 271 ~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~ 324 (408)
..+.+.+..+..||+||||||++.. .+|..||+++|...+.
T Consensus 109 ~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 109 GQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLT 149 (311)
T ss_dssp CHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEE
T ss_pred chHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEE
Confidence 3456667777889999999999842 4788999999977665
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.96 E-value=0.9 Score=46.14 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.8
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.+.|.++.|+. ++.|++|+.+++..|+ ...+++....+. +-.+.+++++++.|++.+ .--+|.+..+++
T Consensus 147 ~~l~~aL~sR~~-v~~l~~l~~edi~~il----~~~l~~~~~~~~--~~~~~i~~~al~~L~~~~---~Gd~R~lln~Le 216 (447)
T 3pvs_A 147 FELNSALLSRAR-VYLLKSLSTEDIEQVL----TQAMEDKTRGYG--GQDIVLPDETRRAIAELV---NGDARRALNTLE 216 (447)
T ss_dssp GSSCHHHHTTEE-EEECCCCCHHHHHHHH----HHHHHCTTTSST--TSSEECCHHHHHHHHHHH---CSCHHHHHHHHH
T ss_pred cccCHHHhCcee-EEeeCCcCHHHHHHHH----HHHHHHHhhhhc--cccCcCCHHHHHHHHHHC---CCCHHHHHHHHH
Confidence 457899999988 6679999999999999 444443322221 245789999999999984 456888888888
Q ss_pred HhhhhhhccCCCCCceEEEEeccccc
Q psy11091 207 SLLLDSMYEVPGSDILMVHITEDTVL 232 (408)
Q Consensus 207 ~~L~d~l~d~pg~~~~~V~Id~~~V~ 232 (408)
+.+.-...+ ......||.+.|.
T Consensus 217 ~a~~~a~~~----~~~~~~It~e~v~ 238 (447)
T 3pvs_A 217 MMADMAEVD----DSGKRVLKPELLT 238 (447)
T ss_dssp HHHHHSCBC----TTSCEECCHHHHH
T ss_pred HHHHhcccc----cCCCCccCHHHHH
Confidence 887643211 1122457766664
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.82 E-value=0.36 Score=44.68 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 268 GVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 268 dv~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
.....+......++.+||||||||.+....... ..++ ...+|..||..+++.
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEA-SRRLKTEFLVEFDGL 151 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CC-SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchH-HHHHHHHHHHHHhcc
Confidence 334445555555678999999999998764321 1122 234566677766653
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.61 E-value=1.1 Score=42.41 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=53.0
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
.+.|.++.|+.. +.|.+++.+++.+|+ ...+ ...+ +.+++++++.|++.+.. ...|.+..++++
T Consensus 242 ~l~~~l~sR~~~-i~~~~~~~~e~~~il----~~~~-------~~~~--~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~ 305 (368)
T 3uk6_A 242 GIPIDLLDRLLI-VSTTPYSEKDTKQIL----RIRC-------EEED--VEMSEDAYTVLTRIGLE--TSLRYAIQLITA 305 (368)
T ss_dssp TCCHHHHTTEEE-EEECCCCHHHHHHHH----HHHH-------HHTT--CCBCHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cCCHHHHhhccE-EEecCCCHHHHHHHH----HHHH-------HHcC--CCCCHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 466889999987 699999999999999 2222 2234 35899999999998754 557888888888
Q ss_pred hhhhh
Q psy11091 208 LLLDS 212 (408)
Q Consensus 208 ~L~d~ 212 (408)
.+...
T Consensus 306 a~~~A 310 (368)
T 3uk6_A 306 ASLVC 310 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 34
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.29 E-value=0.33 Score=50.80 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCccccccCC---ceeecCCC---CHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 129 MIPEFVGRFP---ILVPFHSL---NQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 129 f~PEFlgRLd---~IV~F~pL---s~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
|.|+|+.||+ ..+.|+++ +.+.+.+++ +.+.+.+...+-...++++|++.|++.+.
T Consensus 267 l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 267 MHPALRSRIRGYGYEVYMRTTMPDTIENRRKLV--------QFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp SCHHHHHHHHHHSEEEECCSEEECCHHHHHHHH--------HHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred cCHHHHHHhhccceEeeccccccCCHHHHHHHH--------HHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 6778888886 45666553 444444444 33333333333445789999999998765
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.14 E-value=1.4 Score=37.34 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. ++.|.+|+.+++.+++ ...++ ..++ .+++++++.|++.+ .--.|.+..++++.
T Consensus 145 ~~~~l~~r~~-~i~~~~~~~~~~~~~l----~~~~~-------~~~~--~~~~~~~~~l~~~~---~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 145 IIEPIQSRCA-VFRFKPVPKEAMKKRL----LEICE-------KEGV--KITEDGLEALIYIS---GGDFRKAINALQGA 207 (226)
T ss_dssp SCHHHHTTSE-EEECCCCCHHHHHHHH----HHHHH-------HHTC--CBCHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred cCHHHHHhCc-eeecCCCCHHHHHHHH----HHHHH-------HcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5678889998 8999999999998888 22222 2243 38999999999764 23456677777766
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
..
T Consensus 208 ~~ 209 (226)
T 2chg_A 208 AA 209 (226)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.73 E-value=1.5 Score=41.20 Aligned_cols=71 Identities=13% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCH-HHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSP-EALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~-~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
+.|.+..|+. ++.|.+++.+++.+|+ ..+++.+++.+...|+ .+++ ++++.|++.+ .--.|.+...+++
T Consensus 149 l~~~l~sR~~-~i~~~~~~~~e~~~il----~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~---~gd~R~a~~~L~~ 218 (324)
T 3u61_B 149 IIKPLQSRCR-VITFGQPTDEDKIEMM----KQMIRRLTEICKHEGI--AIADMKVVAALVKKN---FPDFRKTIGELDS 218 (324)
T ss_dssp SCTTHHHHSE-EEECCCCCHHHHHHHH----HHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHT---CSCTTHHHHHHHH
T ss_pred cCHHHHhhCc-EEEeCCCCHHHHHHHH----HHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 7889999995 7999999999999999 6777777777777775 5677 9999999874 3446777777777
Q ss_pred hh
Q psy11091 208 LL 209 (408)
Q Consensus 208 ~L 209 (408)
..
T Consensus 219 ~~ 220 (324)
T 3u61_B 219 YS 220 (324)
T ss_dssp HG
T ss_pred Hh
Confidence 66
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.57 E-value=0.29 Score=47.57 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 274 LKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 274 ~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
.+....++.+||||||||+++..... +.+....-+|..||..++|.
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~ 214 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGA 214 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCeEEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhcc
Confidence 33344446799999999999875332 11223345778888888864
No 38
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.27 E-value=0.66 Score=38.95 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 273 MLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 273 l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+..+++.|+.|++||||||.+... +|..||.+++.
T Consensus 67 ~~~~~~~a~~~~l~lDei~~l~~~-------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 67 PMELLQKAEGGVLYVGDIAQYSRN-------------IQTGITFIIGK 101 (143)
T ss_dssp HHHHHHHTTTSEEEEEECTTCCHH-------------HHHHHHHHHHH
T ss_pred hhhHHHhCCCCeEEEeChHHCCHH-------------HHHHHHHHHHh
Confidence 456778889999999999988532 45666666653
No 39
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=82.15 E-value=0.97 Score=47.58 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=18.2
Q ss_pred hhHhhhhhhhhcCCeEeeCCCC
Q psy11091 14 LVHMWKLLCMLEGTIVNVPEKN 35 (408)
Q Consensus 14 EGVQQaLLKiLEGt~V~Vp~~g 35 (408)
..+|.+||.+||...+++...|
T Consensus 405 ~~~q~~Ll~~le~~~i~i~~~g 426 (595)
T 3f9v_A 405 DEDRVAIHEAMEQQTVSIAKAG 426 (595)
T ss_dssp SHHHHHHHHHHHSSSEEEESSS
T ss_pred HhHhhhhHHHHhCCEEEEecCC
Confidence 4689999999999999986443
No 40
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.04 E-value=0.39 Score=45.16 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeCC
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYP 327 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~~ 327 (408)
++..|+.||+||||||++... +|..||.++|...+....
T Consensus 139 ~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~ 177 (350)
T 1g8p_A 139 LLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVER 177 (350)
T ss_dssp HHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECC
T ss_pred eeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEe
Confidence 355678999999999998532 577888888865444433
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.51 E-value=0.95 Score=42.65 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=51.6
Q ss_pred CCCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHH
Q psy11091 128 GMIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIM 205 (408)
Q Consensus 128 Gf~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriI 205 (408)
.+.|.|..|++ .++.|.| +.+++..|+ ...++ ..+ +.++++++++|++.. ..+|.|..++
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il----~~~~~-------~~~--~~l~~~~l~~l~~~~----g~~r~l~~~l 208 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKII----KEKLK-------EFN--LELRKEVIDYLLENT----KNVREIEGKI 208 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHH----HHHHH-------HTT--CCCCHHHHHHHHHHC----SSHHHHHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHH----HHHHH-------hcC--CCCCHHHHHHHHHhC----CCHHHHHHHH
Confidence 47788999997 6899999 999999998 33332 234 468899999999987 4578888888
Q ss_pred HHhhhh
Q psy11091 206 ESLLLD 211 (408)
Q Consensus 206 e~~L~d 211 (408)
++.+..
T Consensus 209 ~~~~~~ 214 (324)
T 1l8q_A 209 KLIKLK 214 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.66 E-value=0.36 Score=47.34 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=61.6
Q ss_pred cccCC-ceeecCCCCHHHHHhhcccchHHHHHHHHHH-h---------------c----------cCCceEEeCHHHHHH
Q psy11091 134 VGRFP-ILVPFHSLNQELLVRILTEPKNAMIQQYQIL-F---------------T----------MDKVDLTFSPEALQA 186 (408)
Q Consensus 134 lgRLd-~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~-f---------------~----------~~gI~L~ft~~Al~~ 186 (408)
..|+. .++.|.|++.+++.+|| ..-++....- | . ..++.+.++++|++.
T Consensus 185 ~SR~~~~~i~F~pYt~~el~~Il----~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~ 260 (318)
T 3te6_A 185 SLKAHFTEIKLNKVDKNELQQMI----ITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQL 260 (318)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHH----HHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHH
T ss_pred hccCCceEEEeCCCCHHHHHHHH----HHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence 35775 58999999999999999 4445543221 1 0 012456899999999
Q ss_pred HHHHhhccCCcchhHHHHHHHhhhhhhccC---CCCCceEEEEeccccc
Q psy11091 187 IARLALEKKTGARGLRAIMESLLLDSMYEV---PGSDILMVHITEDTVL 232 (408)
Q Consensus 187 IA~~a~d~~~GAR~LrriIe~~L~d~l~d~---pg~~~~~V~Id~~~V~ 232 (408)
+|+++....-=||.-=.++++.++-.-.+. .+.....++||.+.+.
T Consensus 261 ~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~ 309 (318)
T 3te6_A 261 IAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVP 309 (318)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCT
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHH
Confidence 999877666567776666666665443332 2222356667666654
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.19 E-value=0.78 Score=46.69 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=24.1
Q ss_pred ccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 263 DVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 263 DV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
++ || -+..+.++.+.| +-.||||||||.|+.+..
T Consensus 222 ~v-Ge-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 222 YI-GE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp ST-TH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCS
T ss_pred cc-ch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCC
Confidence 44 53 355566666655 678999999999997643
No 44
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.86 E-value=1.1 Score=40.80 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=24.6
Q ss_pred ccceEEeeccccccccCCC--ccccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGI--HQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~--~~~~dvs~egvQ~~ll~~~eg 320 (408)
..+|+||||||+++..... ..+.+-....+|..||..+++
T Consensus 103 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 103 APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 5599999999999875321 112233345577788888765
No 45
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.62 E-value=0.7 Score=41.51 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=14.4
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccC
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVP 297 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~ 297 (408)
+..+..+++.| ..+||||||||+++.+.
T Consensus 84 ~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 84 AARVRSLFKEARARAPCIVYIDEIDAVGKKR 114 (262)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECC-------
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCcchhhccc
Confidence 34445555555 47899999999998754
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.14 E-value=0.86 Score=47.27 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHhh--ccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 273 MLKVSALA--AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 273 l~kll~~a--~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+..++..| ..+|+||||||++..... ..+|..||.+++..
T Consensus 165 ~~~~~~~a~~~~~vl~lDEid~l~~~~~---------~~~~~~LL~~ld~~ 206 (543)
T 3m6a_A 165 IIQGMKKAGKLNPVFLLDEIDKMSSDFR---------GDPSSAMLEVLDPE 206 (543)
T ss_dssp HHHHHHTTCSSSEEEEEEESSSCC------------------CCGGGTCTT
T ss_pred HHHHHHHhhccCCEEEEhhhhhhhhhhc---------cCHHHHHHHHHhhh
Confidence 33455555 788999999999986421 12688999999753
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=77.91 E-value=1.3 Score=38.59 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=50.7
Q ss_pred CccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 130 IPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 130 ~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
.|.+..|++ .++.|.+++.+++.+++ ...++ ..|+ .+++++++.|++.. .--.|.|..++++
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l----~~~~~-------~~~~--~~~~~~~~~l~~~~---~g~~r~l~~~l~~ 219 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAAL----QRRAA-------MRGL--QLPEDVGRFLLNRM---ARDLRTLFDVLDR 219 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHH----HHHHH-------HTTC--CCCHHHHHHHHHHT---TTCHHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHH----HHHHH-------HcCC--CCCHHHHHHHHHHc---cCCHHHHHHHHHH
Confidence 477888886 89999999999999988 33332 2343 68999999999875 3357888888888
Q ss_pred hhhhh
Q psy11091 208 LLLDS 212 (408)
Q Consensus 208 ~L~d~ 212 (408)
.....
T Consensus 220 ~~~~a 224 (242)
T 3bos_A 220 LDKAS 224 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 48
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=77.77 E-value=0.57 Score=49.13 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=29.6
Q ss_pred HHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeC
Q psy11091 277 SALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRY 326 (408)
Q Consensus 277 l~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~ 326 (408)
+..|..||+||||||++-.+ +|..||..||.-+|++-
T Consensus 296 l~LAdgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~ 332 (506)
T 3f8t_A 296 AVLADGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD 332 (506)
T ss_dssp HHHTTTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET
T ss_pred eEEcCCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC
Confidence 55678999999999997432 57789999888888765
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.59 E-value=0.83 Score=43.86 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
....++.+||||||||.++...... ..++ ..-++..||..++|
T Consensus 100 ~a~~~~~~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 100 LARENKPSIIFIDEIDSLCGSRSEN-ESEA-ARRIKTEFLVQMQG 142 (322)
T ss_dssp HHHHTSSEEEEEETTTGGGCCSSSC-CTTH-HHHHHHHHHHHHHC
T ss_pred HHHhcCCcEEEeecHHHhccccccc-cchH-HHHHHHHHHHHHhc
Confidence 3334467899999999998764321 1111 22355567766655
No 50
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.14 E-value=0.9 Score=41.64 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=24.1
Q ss_pred hccceEEeeccccccccCCCccccCCCccccccccccccc
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVST 319 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~e 319 (408)
.+.+||||||||+++.+.... ..-....+|+.|+.+++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDA--LTGGDREVQRTLMQLLA 146 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSS--CCGGGGHHHHHHHHHHH
T ss_pred cCCeEEEEECHHHhcccCccc--cCCccHHHHHHHHHHHH
Confidence 355799999999998764321 11123446777766654
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.06 E-value=0.82 Score=43.15 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=25.1
Q ss_pred ccceEEeeccccccccCCCc-cccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIH-QLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~-~~~dvs~egvQ~~ll~~~eg 320 (408)
..+||||||||.++...+.. ....-...-+|..||..++|
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 56899999999998653211 11111123467778888875
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.91 E-value=1 Score=45.27 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 273 MLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 273 l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
+.+....++.+||||||||.++...... ..+ ...-++..||..++|.
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~-~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSEN-ESE-AARRIKTEFLVQMQGV 265 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCC-CCG-GGHHHHHHHHTTTTCS
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCc-ccc-HHHHHHHHHHHHHhCc
Confidence 3444445577999999999998754321 111 1234677788877763
No 53
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=76.13 E-value=0.61 Score=45.92 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=26.3
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
+++.|+.|++|||||+.+.. .+|.-||+++|.-.
T Consensus 217 ~~~~a~~gtlfldei~~l~~-------------~~Q~~Ll~~l~~~~ 250 (368)
T 3dzd_A 217 KLELADQGTLFLDEVGELDQ-------------RVQAKLLRVLETGS 250 (368)
T ss_dssp HHHHTTTSEEEEETGGGSCH-------------HHHHHHHHHHHHSE
T ss_pred hHhhcCCCeEEecChhhCCH-------------HHHHHHHHHHHhCC
Confidence 56789999999999999853 26777888776443
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.80 E-value=1.2 Score=45.83 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=24.5
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
.++ || -+..+.++.+.| +-.||||||||.|+.+..
T Consensus 255 k~v-Ge-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 255 KYL-GD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp SSS-SH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCS
T ss_pred ccC-ch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCC
Confidence 345 53 455666666655 568999999999998643
No 55
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.71 E-value=0.61 Score=48.11 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHHHhh---ccceEEeeccccccccCCC-ccccCCCcccccccccccccc
Q psy11091 273 MLKVSALA---AFGIVFLDEVDKIGAVPGI-HQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 273 l~kll~~a---~~Givfideidki~~~~~~-~~~~dvs~egvQ~~ll~~~eg 320 (408)
+..+++.| +..||||||||.++.+.+. .++.+...+-++..||..++|
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 34455555 4569999999999876432 122344445677788876653
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.69 E-value=0.54 Score=48.42 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcc---ceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 269 VQQGMLKVSALAAF---GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 269 v~~~l~kll~~a~~---Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.+..+..+++.|.. +|+||||||.++.+.+.. ..+. ..-+|..||.++++
T Consensus 282 ~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~-~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEV-ERRIVSQLLTLMDG 334 (489)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchH-HHHHHHHHHHHhhc
Confidence 34445666666644 599999999999764321 1111 23578889998885
No 57
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.10 E-value=1.3 Score=44.84 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.3
Q ss_pred hccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
++.+|+||||||.+... .|..||+.+|...|
T Consensus 105 ~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~v 135 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKS-------------QQDAFLPHIEDGTI 135 (447)
T ss_dssp TCCEEEEEETTTCC-------------------CCHHHHHTTSC
T ss_pred CCCcEEEEeChhhhCHH-------------HHHHHHHHHhcCce
Confidence 57899999999998532 46789999986544
No 58
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.05 E-value=0.88 Score=44.27 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHhhccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 277 SALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 277 l~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
....+.+||||||||.++...+.. ..+ ...-+|..||..++|
T Consensus 139 a~~~~~~vl~iDEid~l~~~r~~~-~~~-~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 139 ARENKPSIIFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNG 180 (355)
T ss_dssp HHHTSSEEEEEECGGGGTC-------CT-HHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEechHhhcccCCCC-cch-HHHHHHHHHHHHhhc
Confidence 333478999999999998653221 111 123456678877765
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.77 E-value=5.1 Score=34.08 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|. .++.|.+|+.+++.+++ ...++ ..+ +.+++++++.|++.+ .--.|.+..++++.
T Consensus 169 ~~~~l~~r~-~~i~l~~l~~~e~~~~l----~~~~~-------~~~--~~~~~~~~~~l~~~~---~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRC-LQFHLKALDVEQIRHQL----EHILN-------EEH--IAHEPRALQLLARAA---EGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHH----HHHHH-------HTT--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred CCHHHHHHh-hhccCCCCCHHHHHHHH----HHHHH-------hcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 456677784 68899999999999888 33322 234 357899999999886 22466677777666
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 232 ~ 232 (250)
T 1njg_A 232 I 232 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.68 E-value=1.4 Score=40.10 Aligned_cols=34 Identities=29% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHhhccceEEeeccccccccCCCccccCCCccccccccccccccce
Q psy11091 276 VSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYL 322 (408)
Q Consensus 276 ll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~ 322 (408)
+++.|+.|++||||||++.. .+|..||.+++...
T Consensus 95 ~l~~a~~~~l~lDEi~~l~~-------------~~q~~Ll~~l~~~~ 128 (265)
T 2bjv_A 95 RFERADGGTLFLDELATAPM-------------MVQEKLLRVIEYGE 128 (265)
T ss_dssp HHHHTTTSEEEEESGGGSCH-------------HHHHHHHHHHHHCE
T ss_pred hhhhcCCcEEEEechHhcCH-------------HHHHHHHHHHHhCC
Confidence 56678899999999999863 25778888887543
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=72.92 E-value=4.9 Score=36.89 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. ++.|.||+.+++.+++ .. .++..|+ .+++++++.|++.+ .-..|.+..++++.
T Consensus 153 l~~~l~sr~~-~~~~~~l~~~~~~~~l----~~-------~~~~~~~--~~~~~~~~~l~~~~---~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 153 IIEPIQSRCA-IFRFRPLRDEDIAKRL----RY-------IAENEGL--ELTEEGLQAILYIA---EGDMRRAINILQAA 215 (327)
T ss_dssp SCHHHHHTEE-EEECCCCCHHHHHHHH----HH-------HHHTTTC--EECHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred cCHHHHhhCc-EEEecCCCHHHHHHHH----HH-------HHHhcCC--CCCHHHHHHHHHHC---CCCHHHHHHHHHHH
Confidence 5677788887 7899999999998888 22 2334454 58999999999876 33456666666655
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 216 ~ 216 (327)
T 1iqp_A 216 A 216 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.34 E-value=5 Score=36.67 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=46.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. ++.|.+++.+++.+++ . +.++..|+ .+++++++.|++.+ .--.|.+...+++.
T Consensus 145 l~~~l~sr~~-~i~~~~~~~~~~~~~l----~-------~~~~~~~~--~i~~~~l~~l~~~~---~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 145 IIEPIQSRCA-VFRFKPVPKEAMKKRL----L-------EICEKEGV--KITEDGLEALIYIS---GGDFRKAINALQGA 207 (319)
T ss_dssp SCHHHHTTCE-EEECCCCCHHHHHHHH----H-------HHHHTTCC--CBCHHHHHHHHHTT---TTCHHHHHHHHHHH
T ss_pred cchHHHhhCe-EEEecCCCHHHHHHHH----H-------HHHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5678888986 8999999999998888 2 22334454 48999999999654 33456666666665
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 208 ~ 208 (319)
T 2chq_A 208 A 208 (319)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.36 E-value=1.6 Score=41.48 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccc
Q psy11091 275 KVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 275 kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~ 321 (408)
.+++.|+.|++||||||++... +|..||.+++.-
T Consensus 90 g~~~~a~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~ 123 (304)
T 1ojl_A 90 GRFVEADGGTLFLDEIGDISPL-------------MQVRLLRAIQER 123 (304)
T ss_dssp CHHHHHTTSEEEEESCTTCCHH-------------HHHHHHHHHHSS
T ss_pred CHHHhcCCCEEEEeccccCCHH-------------HHHHHHHHHhcC
Confidence 3567788999999999998532 466666666643
No 64
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.12 E-value=4 Score=38.40 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=48.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeC-HHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFS-PEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft-~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
+.|.+..|+ .++.|.+++.+++.++| ....+ ..|+ .++ +++++.|++.+ +-..|.+...+++
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l----~~~~~-------~~~~--~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTIL----SDVVT-------NERI--QLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHH----HHHHH-------HHTC--EECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHH----HHHHH-------HcCC--CCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 567788898 78999999999999988 23222 2354 578 99999999876 4456777677776
Q ss_pred hhh
Q psy11091 208 LLL 210 (408)
Q Consensus 208 ~L~ 210 (408)
...
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 65
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.92 E-value=5.1 Score=37.62 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=51.5
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccch-------------HHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhc-
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPK-------------NAMIQQYQILFTMDKVDLTFSPEALQAIARLALE- 193 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk-------------~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d- 193 (408)
.+.|.|+.|++..+.|.+++.++..+||..-- ...+.+.++.. -.+.++++++++|++....
T Consensus 167 ~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~~~~~~~i~~~~~~~ 242 (331)
T 2r44_A 167 PLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI----NKVTISESLEKYIIELVFAT 242 (331)
T ss_dssp CCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH----HTCBCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHH
Confidence 37899999999889999999999999983200 01122222222 1456899999999886532
Q ss_pred ----------------cCCcchhHHHHHHHh
Q psy11091 194 ----------------KKTGARGLRAIMESL 208 (408)
Q Consensus 194 ----------------~~~GAR~LrriIe~~ 208 (408)
.+.++|.+.++++..
T Consensus 243 r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a 273 (331)
T 2r44_A 243 RFPAEYGLEAEASYILYGASTRAAINLNRVA 273 (331)
T ss_dssp HSGGGGTCHHHHHHEEECCCHHHHHHHHHHH
T ss_pred hccccccccccccccccCcChhHHHHHHHHH
Confidence 133578777766654
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.11 E-value=1.4 Score=40.39 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=23.5
Q ss_pred hccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
++.+||||||||+++..... +.. ....+++.|+.++++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~--~~~-~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPI--GPR-FSNLVLQALLVLLKK 160 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTT--TTB-CCHHHHHHHHHHTTC
T ss_pred cCCcEEEEEChhhhhccCCC--Chh-HHHHHHHHHHHHhcC
Confidence 46899999999999765321 111 123455566666654
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.16 E-value=1.5 Score=41.25 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=24.2
Q ss_pred hhccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 279 LAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 279 ~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
.+..|++||||||++.. .+|..||.+++...+
T Consensus 104 ~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~l~~~~~ 135 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSP-------------AIEEVLYPAMEDYRL 135 (338)
T ss_dssp CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCC
T ss_pred ccCCCEEEEechhhcCH-------------HHHHHHHHHHHhccc
Confidence 46889999999999862 256677777776544
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.70 E-value=1.3 Score=46.35 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccceEEeeccccccccCCCccccCCCccccccccccccccceeeeC
Q psy11091 269 VQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRY 326 (408)
Q Consensus 269 v~~~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~~ 326 (408)
.+.+-.-+++.|+.|++||||||++.. .+|..||.++|.-.+...
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~-------------~~q~~Ll~~Le~~~~~~~ 233 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSL-------------KMQQSLLTAMQEKKFPIT 233 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCH-------------HHHHHHHHHHHHSEECCB
T ss_pred cccccCceeeecCCCEEEEechhhCCH-------------HHHHHHHHHHHcCcEEec
Confidence 333344467789999999999999731 278889999987666543
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=66.44 E-value=3.8 Score=43.78 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHHHHHhhccceEEeeccccccccCCCccccCCCcccccccccccccccee
Q psy11091 272 GMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323 (408)
Q Consensus 272 ~l~kll~~a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v 323 (408)
.+.+.+.++..+|||||||||+. ..+|..||++++.-.+
T Consensus 570 ~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~ 608 (758)
T 3pxi_A 570 QLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLEDGRL 608 (758)
T ss_dssp -CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHHSBC
T ss_pred hhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhccCeE
Confidence 34455666788999999999873 2478899999986444
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.97 E-value=4.1 Score=40.81 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHHHHHhh------ccceEEeeccccccccCC
Q psy11091 273 MLKVSALA------AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 273 l~kll~~a------~~Givfideidki~~~~~ 298 (408)
+.++...| +.+||||||||+++.+.+
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 56666665 678999999999998643
No 71
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.91 E-value=2.2 Score=43.62 Aligned_cols=29 Identities=34% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
+..+..+...| +-.||||||||.|+.+..
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccc
Confidence 44555555555 678999999999997643
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.34 E-value=4.7 Score=44.37 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 268 GVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 268 dv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
+-+..+.++.+.| +-.||||||||.|+.+.+
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~ 314 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccC
Confidence 4567777887777 578999999999997644
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.17 E-value=4.4 Score=38.33 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=51.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+..++.|.||+.+++.+|+ ...++ +.|. ...+++++++.|++.+-...--+|-+..+++..
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il----~~~~~---~~~~----~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFIL----SKYAE---YGLI----KGTYDDEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHH----HHHHH---HTSC----TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHH----HHHHH---hhcc----cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 567778898889999999999999999 33332 1222 125789999999998753323367676777776
Q ss_pred hhhh
Q psy11091 209 LLDS 212 (408)
Q Consensus 209 L~d~ 212 (408)
..-.
T Consensus 249 ~~~a 252 (384)
T 2qby_B 249 AQLA 252 (384)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=63.67 E-value=7.1 Score=36.69 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=47.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+ .++.|.+++.+++.+++ ...++ ..|+ .+++++++.|++.+ +--.|.+..++++.
T Consensus 162 l~~~l~sr~-~~i~~~~l~~~~~~~~l----~~~~~-------~~~~--~~~~~a~~~l~~~~---~G~~r~~~~~l~~~ 224 (373)
T 1jr3_A 162 LPVTILSRC-LQFHLKALDVEQIRHQL----EHILN-------EEHI--AHEPRALQLLARAA---EGSLRDALSLTDQA 224 (373)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHH----HHHHH-------HHTC--CBCHHHHHHHHHHS---SSCHHHHHHHHHHH
T ss_pred CcHHHHhhe-eEeeCCCCCHHHHHHHH----HHHHH-------HcCC--CCCHHHHHHHHHHC---CCCHHHHHHHHHHH
Confidence 567788887 68999999999999888 33322 2243 57999999999886 33566777777776
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
+
T Consensus 225 ~ 225 (373)
T 1jr3_A 225 I 225 (373)
T ss_dssp H
T ss_pred H
Confidence 5
No 75
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=63.22 E-value=3.2 Score=38.97 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCCccccccCCc-eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 128 GMIPEFVGRFPI-LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 128 Gf~PEFlgRLd~-IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
.+.|.+..|+.. ++.|.||+.+++.+|+ ...+++ .+. ...+++++++.|++.+-...--+|-+..+++
T Consensus 182 ~l~~~l~~r~~~~~i~l~~l~~~~~~~il----~~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 182 NLEPRVKSSLGEVELVFPPYTAPQLRDIL----ETRAEE---AFN----PGVLDPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp SSCHHHHTTTTSEECCBCCCCHHHHHHHH----HHHHHH---HBC----TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred hhCHHHHhcCCCeEEeeCCCCHHHHHHHH----HHHHHh---hcc----CCCCCHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 356778889987 9999999999999999 333321 221 2346899999999988644445777777887
Q ss_pred Hhhhhh
Q psy11091 207 SLLLDS 212 (408)
Q Consensus 207 ~~L~d~ 212 (408)
....-.
T Consensus 251 ~a~~~a 256 (387)
T 2v1u_A 251 VAGEIA 256 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776533
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=63.11 E-value=5.7 Score=32.70 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=19.5
Q ss_pred cceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 282 FGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 282 ~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..||||||+|++....... ....+|.-|+++++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~~ 149 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALAR 149 (195)
T ss_dssp TEEEEEETGGGGTT-----------CCCCHHHHHHHHHT
T ss_pred CeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhcc
Confidence 4489999999998653211 123356666666654
No 77
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.92 E-value=8.3 Score=35.26 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.2
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. ++.|.+++.+++.+++ ...+++ .|+ .+++++++.|++.+ +--.|.+...+++.
T Consensus 150 l~~~l~sr~~-~i~~~~~~~~~~~~~l----~~~~~~-------~~~--~~~~~~~~~l~~~~---~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 150 IIEPLQSQCA-ILRYSKLSDEDVLKRL----LQIIKL-------EDV--KYTNDGLEAIIFTA---EGDMRQAINNLQST 212 (323)
T ss_dssp SCHHHHTTSE-EEECCCCCHHHHHHHH----HHHHHH-------HTC--CBCHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred chhHHHhhce-EEeecCCCHHHHHHHH----HHHHHH-------cCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 5677888876 8999999999999988 333222 243 47899999999986 33455666666665
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 5
No 78
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=62.41 E-value=3.2 Score=40.93 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=17.1
Q ss_pred HHHhhccceEEeecccccc
Q psy11091 276 VSALAAFGIVFLDEVDKIG 294 (408)
Q Consensus 276 ll~~a~~Givfideidki~ 294 (408)
+++.|+.|++|||||+.+.
T Consensus 226 ~~~~a~~gtlfldei~~l~ 244 (387)
T 1ny5_A 226 FFELADGGTLFLDEIGELS 244 (387)
T ss_dssp HHHHTTTSEEEEESGGGCC
T ss_pred ceeeCCCcEEEEcChhhCC
Confidence 6788999999999999885
No 79
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.32 E-value=10 Score=36.73 Aligned_cols=73 Identities=5% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.|...+.++..+|+ ... +...+ +.+++..++.||+.. .+|-.|-|+.++++.
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il----~~~-------l~~~~--~~~~~~~l~~la~~t--~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMF----EIN-------VGDTP--SVLTKEDYRTLGAMT--EGYSGSDIAVVVKDA 264 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHH----HHH-------HTTSC--BCCCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHH----HHH-------HhhCC--CCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457788899999999999999999888 222 22223 356899999999875 467788999999998
Q ss_pred hhhhhccC
Q psy11091 209 LLDSMYEV 216 (408)
Q Consensus 209 L~d~l~d~ 216 (408)
+..++.+.
T Consensus 265 ~~~a~~~~ 272 (355)
T 2qp9_X 265 LMQPIRKI 272 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.27 E-value=3.4 Score=42.80 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
+..+.++.+.| +-.||||||||.|+.+..
T Consensus 288 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 319 (467)
T 4b4t_H 288 ARMVRELFEMARTKKACIIFFDEIDAVGGARF 319 (467)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCS
T ss_pred HHHHHHHHHHHHhcCCceEeeccccccccccc
Confidence 44555555555 667999999999997643
No 81
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.11 E-value=4 Score=44.95 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=23.5
Q ss_pred cccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 262 RDVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 262 RDV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
.++ ||. +..+.++.+.| +-.||||||||.|+.+.+
T Consensus 550 ~~v-Ges-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 550 MWF-GES-EANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp TTC-SSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred ccc-chH-HHHHHHHHHHHHHcCCceeechhhhHHhhccC
Confidence 344 433 66777777776 568999999999997643
No 82
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.33 E-value=3.6 Score=41.93 Aligned_cols=34 Identities=38% Similarity=0.390 Sum_probs=23.9
Q ss_pred ccCcchHHHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 263 DVGGEGVQQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 263 DV~gedv~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
++ || -+..+.++...| +-.||||||||.|+....
T Consensus 246 ~~-Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 246 YL-GE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 282 (428)
T ss_dssp SC-SH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCS
T ss_pred cc-ch-hHHHHHHHHHHHHHcCCCeeechhhhhhhcccc
Confidence 44 53 345566666555 568999999999997643
No 83
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=59.88 E-value=8.9 Score=34.42 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=20.0
Q ss_pred CCCccccccCCceeecCCCC-HHHHHhhc
Q psy11091 128 GMIPEFVGRFPILVPFHSLN-QELLVRIL 155 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs-~e~L~~IL 155 (408)
||.||+..|-|..+.|.+|| .-+|.+++
T Consensus 106 Gl~~~v~~rAd~~lSlS~mTfpHqL~Rli 134 (163)
T 1o6d_A 106 GLNEEIFAKAHRVFSLSKMTFTHGMTVLI 134 (163)
T ss_dssp CCCGGGGGGCSEEEECCSSCCCHHHHHHH
T ss_pred CCCHHHHHhhCceEEccCCCCcHHHHHHH
Confidence 46677777778888888887 45566665
No 84
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=59.81 E-value=3.9 Score=38.53 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCccccccCCc-eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhcc------CCcchhH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEK------KTGARGL 201 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~------~~GAR~L 201 (408)
+.|.+..|+.. ++.|.||+.+++.+++ ...+. ..+.. ..+++++++.|++.+... .--+|.+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l----~~~~~---~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDIL----LDRAK---AGLAE----GSYSEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHH----HHHHH---HHBCT----TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHH----HHHHH---hhcCC----CCCCHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 56677778776 8999999999999999 33322 22221 167999999999998543 3347888
Q ss_pred HHHHHHhhhhh
Q psy11091 202 RAIMESLLLDS 212 (408)
Q Consensus 202 rriIe~~L~d~ 212 (408)
..+++......
T Consensus 244 ~~~l~~a~~~a 254 (389)
T 1fnn_A 244 IDILYRSAYAA 254 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766543
No 85
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=59.61 E-value=11 Score=36.04 Aligned_cols=73 Identities=8% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.+...+.++..+|+ ... +... .+.+++..++.||+.. .+|-.+-|+.++++.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il----~~~-------l~~~--~~~l~~~~l~~la~~t--~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMF----KLH-------LGTT--QNSLTEADFRELGRKT--DGYSGADISIIVRDA 226 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHH----HHH-------HTTC--CBCCCHHHHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHH----HHH-------HhcC--CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457778899999999999999999888 222 2222 3456899999999864 577778899999888
Q ss_pred hhhhhccC
Q psy11091 209 LLDSMYEV 216 (408)
Q Consensus 209 L~d~l~d~ 216 (408)
...++-+.
T Consensus 227 ~~~a~r~~ 234 (322)
T 1xwi_A 227 LMQPVRKV 234 (322)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 87776554
No 86
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=59.61 E-value=5 Score=36.13 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=13.1
Q ss_pred CceeEEecCCCccHHHHHHhh
Q psy11091 50 TNILFVASGAYNGLDRLISRR 70 (408)
Q Consensus 50 sNILFI~~GAF~GL~kiI~~R 70 (408)
++|.||-|||+ ||++-+.+|
T Consensus 101 ~~i~FvIGGa~-Gl~~~v~~r 120 (167)
T 1to0_A 101 SKVTFVIGGSL-GLSDTVMKR 120 (167)
T ss_dssp CEEEEEECCSS-CCCHHHHHH
T ss_pred ceEEEEEECCC-CCCHHHHHh
Confidence 67888888885 655444443
No 87
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.72 E-value=6 Score=40.39 Aligned_cols=29 Identities=38% Similarity=0.405 Sum_probs=21.2
Q ss_pred HHHHHHHHHhh---ccceEEeeccccccccCC
Q psy11091 270 QQGMLKVSALA---AFGIVFLDEVDKIGAVPG 298 (408)
Q Consensus 270 ~~~l~kll~~a---~~Givfideidki~~~~~ 298 (408)
+..+..+.+.| +--||||||||.|+.+..
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCS
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhhhccC
Confidence 45555555544 678999999999997643
No 88
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=57.74 E-value=4.5 Score=40.60 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=51.5
Q ss_pred CCccccccCC--ceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVGRFP--ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlgRLd--~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|.++.|+. .++.|.+++.+++..|| ...++ ..+ +.++++++++||+.. ..-+|.|..+++
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL----~~~~~-------~~~--~~i~~e~l~~la~~~---~gn~R~l~~~L~ 307 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIA----RKMLE-------IEH--GELPEEVLNFVAENV---DDNLRRLRGAII 307 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHH----HHHHH-------HHT--CCCCTTHHHHHHHHC---CSCHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHH----HHHHH-------HcC--CCCCHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 6678888886 78999999999999998 33222 224 357899999999765 356788888888
Q ss_pred Hhhhhh
Q psy11091 207 SLLLDS 212 (408)
Q Consensus 207 ~~L~d~ 212 (408)
+.+.-.
T Consensus 308 ~~~~~a 313 (440)
T 2z4s_A 308 KLLVYK 313 (440)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 89
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=57.57 E-value=14 Score=35.57 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.+...+.++..+|+ ..++ +..+ +.+++++++.||+.. .++-.+.|+.+++..
T Consensus 234 l~~~l~~Rf~~~i~i~~p~~~~r~~il----~~~~-------~~~~--~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 234 IDEAARRRLVKRLYIPLPEASARKQIV----INLM-------SKEQ--CCLSEEEIEQIVQQS--DAFSGADMTQLCREA 298 (357)
T ss_dssp BCHHHHTTCCEEEECCCCCHHHHHHHH----HHHH-------HTSC--BCCCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred CCHHHHhhCceEEEeCCcCHHHHHHHH----HHHH-------hhcC--CCccHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 557788899999999999999988888 3322 2223 457899999999986 566778899988887
Q ss_pred hhhhhccCC
Q psy11091 209 LLDSMYEVP 217 (408)
Q Consensus 209 L~d~l~d~p 217 (408)
....+.++.
T Consensus 299 ~~~~ir~l~ 307 (357)
T 3d8b_A 299 SLGPIRSLQ 307 (357)
T ss_dssp HTHHHHHCC
T ss_pred HHHHHHHhh
Confidence 776665543
No 90
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=57.19 E-value=15 Score=36.66 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=57.6
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.|+.|++.++.+...+.++...|+ ... +.. ..+.+++..++.||+.. .+|-.+-|+.++++.
T Consensus 284 ld~al~rRf~~~i~i~~P~~~~r~~il----~~~-------l~~--~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a 348 (444)
T 2zan_A 284 LDSAIRRRFEKRIYIPLPEAHARAAMF----RLH-------LGS--TQNSLTEADFQELGRKT--DGYSGADISIIVRDA 348 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHH----HHH-------HTT--SCEECCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred cCHHHHhhcceEEEeCCcCHHHHHHHH----HHH-------Hhc--CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 567888899999999999999988888 222 222 34567899999999875 577888999999988
Q ss_pred hhhhhccC
Q psy11091 209 LLDSMYEV 216 (408)
Q Consensus 209 L~d~l~d~ 216 (408)
+..++-+.
T Consensus 349 ~~~a~r~~ 356 (444)
T 2zan_A 349 LMQPVRKV 356 (444)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 91
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.75 E-value=13 Score=34.64 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.+..|+. ++.|.+++.+++.+++ .. .+...++ .+++++++.|++.+- --.|.+...+++.
T Consensus 176 l~~~l~sR~~-~i~~~~~~~~~~~~~l----~~-------~~~~~~~--~i~~~~l~~l~~~~~---G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 176 IIDPLASQCS-KFRFKALDASNAIDRL----RF-------ISEQENV--KCDDGVLERILDISA---GDLRRGITLLQSA 238 (353)
T ss_dssp SCHHHHHHSE-EEECCCCCHHHHHHHH----HH-------HHHTTTC--CCCHHHHHHHHHHTS---SCHHHHHHHHHHT
T ss_pred CcchhhccCc-eEEeCCCCHHHHHHHH----HH-------HHHHhCC--CCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 6678888986 7899999999998888 22 2233454 589999999999764 2356666666654
Q ss_pred h
Q psy11091 209 L 209 (408)
Q Consensus 209 L 209 (408)
.
T Consensus 239 ~ 239 (353)
T 1sxj_D 239 S 239 (353)
T ss_dssp H
T ss_pred H
Confidence 4
No 92
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=54.10 E-value=1.8 Score=47.09 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHHHHHhh---ccceEEeeccccccccCCCcc-ccCCCccccccccccccccc
Q psy11091 272 GMLKVSALA---AFGIVFLDEVDKIGAVPGIHQ-LRDVGGEGVQQGMLKVSTSY 321 (408)
Q Consensus 272 ~l~kll~~a---~~Givfideidki~~~~~~~~-~~dvs~egvQ~~ll~~~eg~ 321 (408)
.+..+.+.| ..+|+||||||+++...+... ..+-...-++..||..++|-
T Consensus 558 ~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 344444444 558999999999987643211 11112245677888888764
No 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=53.36 E-value=16 Score=33.51 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=55.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.|...+.++...|+ ...+ ...+ +.+++++++.||+.+ .++-.+.|+.+++..
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il----~~~~-------~~~~--~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLL----NRLL-------QKQG--SPLDTEALRRLAKIT--DGYSGSDLTALAKDA 236 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHH----HHHH-------GGGS--CCSCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHH----HHHH-------HhcC--CCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 567788899999999999999888887 2222 2223 347899999999875 577778899888887
Q ss_pred hhhhhccCC
Q psy11091 209 LLDSMYEVP 217 (408)
Q Consensus 209 L~d~l~d~p 217 (408)
....+-+..
T Consensus 237 ~~~a~r~~~ 245 (297)
T 3b9p_A 237 ALEPIRELN 245 (297)
T ss_dssp TTHHHHTCC
T ss_pred HHHHHHHHh
Confidence 776665553
No 94
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=51.95 E-value=7 Score=35.05 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=13.0
Q ss_pred CceeEEecCCCccHHHHHHhh
Q psy11091 50 TNILFVASGAYNGLDRLISRR 70 (408)
Q Consensus 50 sNILFI~~GAF~GL~kiI~~R 70 (408)
++|.||-|||+ ||+.-+.+|
T Consensus 105 ~~i~FvIGG~~-Gl~~~v~~r 124 (163)
T 4fak_A 105 SDFVFVIGGSN-GLHKDVLQR 124 (163)
T ss_dssp CEEEEEECBTT-BCCHHHHHH
T ss_pred cceEEEEECCC-ccCHHHHHh
Confidence 57888888884 655544443
No 95
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.16 E-value=19 Score=34.19 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.+-+..|+..++.|++++.+++.+||. ...+ ..+ +.+++++.+.||+.+ .-.+|-+.+++++.
T Consensus 163 Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~----~~~~-------~~~--~~~~~~~~~~ia~~~---~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 163 LSSPLRSRFGIILELDFYTVKELKEIIK----RAAS-------LMD--VEIEDAAAEMIAKRS---RGTPRIAIRLTKRV 226 (334)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHH-------HTT--CCBCHHHHHHHHHTS---TTCHHHHHHHHHHH
T ss_pred CCHHHHHhcCceeeCCCCCHHHHHHHHH----HHHH-------HcC--CCcCHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 4455778998889999999999999992 2221 124 358999999999875 23456666777665
Q ss_pred hh
Q psy11091 209 LL 210 (408)
Q Consensus 209 L~ 210 (408)
..
T Consensus 227 ~~ 228 (334)
T 1in4_A 227 RD 228 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.81 E-value=25 Score=34.04 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++.++.|...+.++..+|+ ..+ +...+ +.+++++++.|++.. .++-.+.|+.+++..
T Consensus 265 l~~~l~~R~~~~i~i~~p~~~~r~~il----~~~-------~~~~~--~~l~~~~~~~la~~~--~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 265 LDEAVLRRFIKRVYVSLPNEETRLLLL----KNL-------LCKQG--SPLTQKELAQLARMT--DGYSGSDLTALAKDA 329 (389)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHH----HHH-------HTTSC--CCSCHHHHHHHHHHT--TTCCHHHHHHHHHHH
T ss_pred cCHHHHcCcceEEEcCCcCHHHHHHHH----HHH-------HHhcC--CCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 578888999999999999999999988 222 22333 457899999999875 456777888888877
Q ss_pred hhhhhccCC
Q psy11091 209 LLDSMYEVP 217 (408)
Q Consensus 209 L~d~l~d~p 217 (408)
....+.++.
T Consensus 330 ~~~~~rel~ 338 (389)
T 3vfd_A 330 ALGPIRELK 338 (389)
T ss_dssp TTHHHHTSC
T ss_pred HHHHHHhhh
Confidence 766665553
No 97
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=48.73 E-value=11 Score=31.05 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=20.4
Q ss_pred cceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 282 FGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 282 ~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..++||||+|++....... -....++.-|+++++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~----~~~~~~~~~l~~~~~~ 150 (187)
T 2p65_A 116 QVVMFIDEIHTVVGAGAVA----EGALDAGNILKPMLAR 150 (187)
T ss_dssp SEEEEETTGGGGSSSSSSC----TTSCCTHHHHHHHHHT
T ss_pred ceEEEEeCHHHhccccccc----ccchHHHHHHHHHHhc
Confidence 3599999999998543210 0113345556666554
No 98
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.56 E-value=13 Score=34.55 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCccccccCCc-eeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHH
Q psy11091 129 MIPEFVGRFPI-LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMES 207 (408)
Q Consensus 129 f~PEFlgRLd~-IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~ 207 (408)
+.|.+..|+.. .+.|.||+.+++.+|+ ...++ +.+. ...+++++.+.|++.+-...--+|.+..++++
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il----~~~~~---~~~~----~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDIL----TKRAQ---MAFK----PGVLPDNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHH----HHHHH---HHBC----SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHH----HHHHH---hhcc----CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55667778864 8999999999999999 23222 2222 23578999999998775322335666666666
Q ss_pred hhh
Q psy11091 208 LLL 210 (408)
Q Consensus 208 ~L~ 210 (408)
...
T Consensus 248 a~~ 250 (386)
T 2qby_A 248 SGE 250 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 99
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=48.26 E-value=7.9 Score=34.39 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=14.6
Q ss_pred eCCceeEEecCCCccHHHHHHhh
Q psy11091 48 DTTNILFVASGAYNGLDRLISRR 70 (408)
Q Consensus 48 DTsNILFI~~GAF~GL~kiI~~R 70 (408)
+.++|.||-|||+ ||++-+.+|
T Consensus 94 ~g~~i~FvIGG~~-Gl~~~v~~r 115 (155)
T 1ns5_A 94 DGRDVSLLIGGPE-GLSPACKAA 115 (155)
T ss_dssp HCSCEEEEECBTT-BCCHHHHHH
T ss_pred cCCeEEEEEECCC-CCCHHHHHh
Confidence 3367888888885 665555544
No 100
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=48.23 E-value=19 Score=33.87 Aligned_cols=73 Identities=5% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|.++.|++..+.|...+.++..+|+ ... +.. ..+.+++..++.||+.. .+|-.+-|+.++++.
T Consensus 167 ld~al~~Rf~~~i~~~~p~~~~r~~il----~~~-------~~~--~~~~~~~~~l~~la~~t--~g~sg~di~~l~~~a 231 (322)
T 3eie_A 167 LDSAIRRRFERRIYIPLPDLAARTTMF----EIN-------VGD--TPCVLTKEDYRTLGAMT--EGYSGSDIAVVVKDA 231 (322)
T ss_dssp SCHHHHHHCCEEEECCCCCHHHHHHHH----HHH-------HTT--CCCCCCHHHHHHHHHTT--TTCCHHHHHHHHHHH
T ss_pred CCHHHHcccCeEEEeCCCCHHHHHHHH----HHH-------hcc--CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 568888899999999999999999988 222 222 34456899999999865 467778899888888
Q ss_pred hhhhhccC
Q psy11091 209 LLDSMYEV 216 (408)
Q Consensus 209 L~d~l~d~ 216 (408)
...++.+.
T Consensus 232 ~~~a~r~~ 239 (322)
T 3eie_A 232 LMQPIRKI 239 (322)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 101
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.53 E-value=8.7 Score=35.48 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=23.5
Q ss_pred hccceEEeeccccccccCCCccccCCCccccccccccccccceee
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFY 324 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~ 324 (408)
++.|+|||||||++... .|..|+.+++...+.
T Consensus 89 ~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~ 120 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMD 120 (324)
T ss_dssp CTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEE
T ss_pred cCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhH
Confidence 68899999999988632 466777777765544
No 102
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=45.65 E-value=5.4 Score=36.03 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccc---eEEeecccccccc-CCCccccCCCcccccccccccccc
Q psy11091 270 QQGMLKVSALAAFG---IVFLDEVDKIGAV-PGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 270 ~~~l~kll~~a~~G---ivfideidki~~~-~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+..+..+.+.|..+ |+||||||.++.. ....++..-..+-++..||..+++
T Consensus 90 ~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
No 103
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.08 E-value=4.7 Score=37.85 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=24.3
Q ss_pred cceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 282 FGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 282 ~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
.||+||||||++.. .+|..||++++.-.+.+
T Consensus 110 ~~vl~iDEi~~~~~-------------~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 110 SNFILADEVNRSPA-------------KVQSALLECMQEKQVTI 140 (331)
T ss_dssp SSEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEE
T ss_pred ccEEEEEccccCCH-------------HHHHHHHHHHhcCceee
Confidence 38999999998632 36778999998777666
No 104
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.10 E-value=16 Score=36.42 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
+.|-++.|+..+ .|.+++.+++.+|| ....+ ..+ +.+++++++.|++.+.+ -.+|..-.++++.
T Consensus 350 l~~~i~sR~~~~-~~~~~~~~e~~~iL----~~~~~-------~~~--~~~~~~~~~~i~~~a~~--g~~r~a~~ll~~a 413 (456)
T 2c9o_A 350 IPLDLLDRVMII-RTMLYTPQEMKQII----KIRAQ-------TEG--INISEEALNHLGEIGTK--TTLRYSVQLLTPA 413 (456)
T ss_dssp CCHHHHTTEEEE-ECCCCCHHHHHHHH----HHHHH-------HHT--CCBCHHHHHHHHHHHHH--SCHHHHHHTHHHH
T ss_pred CChhHHhhccee-eCCCCCHHHHHHHH----HHHHH-------HhC--CCCCHHHHHHHHHHccC--CCHHHHHHHHHHH
Confidence 445589999875 99999999999999 22221 113 35899999999998732 2455554555544
No 105
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=42.00 E-value=6.2 Score=40.79 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=23.7
Q ss_pred ccceEEeeccccccccCCCccccCCCccccccccccccccceeee
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYR 325 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg~~v~~ 325 (408)
..+|+||||||+.. ..+|..||.+++.-.+..
T Consensus 109 ~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRN 140 (500)
T ss_dssp GCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEEC
T ss_pred cceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccC
Confidence 35699999998643 237888999998666654
No 106
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.30 E-value=14 Score=34.85 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=11.3
Q ss_pred cceEEeecccccc
Q psy11091 282 FGIVFLDEVDKIG 294 (408)
Q Consensus 282 ~Givfideidki~ 294 (408)
.||+||||||++.
T Consensus 190 ~~vl~IDEi~~l~ 202 (368)
T 3uk6_A 190 PGVLFIDEVHMLD 202 (368)
T ss_dssp BCEEEEESGGGSB
T ss_pred CceEEEhhccccC
Confidence 3699999999985
No 107
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=40.55 E-value=8.5 Score=32.48 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.9
Q ss_pred CCceeEEecCCC
Q psy11091 49 TTNILFVASGAY 60 (408)
Q Consensus 49 TsNILFI~~GAF 60 (408)
+.+|||||.|.=
T Consensus 3 ~~~VLFVC~gN~ 14 (131)
T 1jf8_A 3 KKTIYFISTGNS 14 (131)
T ss_dssp CEEEEEEESSSS
T ss_pred CCEEEEEcCCcc
Confidence 458999999983
No 108
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=40.05 E-value=5.6 Score=38.13 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=21.4
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..-||||||+|++... .|.+||+.+|-
T Consensus 82 ~~kvviIdead~lt~~-------------a~naLLk~LEe 108 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-------------AANAFLKALEE 108 (305)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHS
T ss_pred CceEEEeccHHHhCHH-------------HHHHHHHHHhC
Confidence 3569999999998532 36789999995
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=39.49 E-value=16 Score=30.67 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=20.2
Q ss_pred hccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+..++|||||+|++... .|..|+.+++.
T Consensus 101 ~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~ 128 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-------------AQAALRRTMEM 128 (226)
T ss_dssp CSCEEEEEETGGGSCHH-------------HHHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHH-------------HHHHHHHHHHh
Confidence 46789999999998532 34567776654
No 110
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.73 E-value=51 Score=35.72 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=42.8
Q ss_pred cCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 127 FGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
.-..|-|..|++. +.|.+++.++...|| ..+++.+.. .++ +.++++++..+++.+
T Consensus 314 ~~~d~aL~rRf~~-i~l~~p~~~e~~~iL----~~~~~~~~~---~~~--~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 314 IEKDPALERRFQP-VYVDEPTVEETISIL----RGLKEKYEV---HHG--VRISDSAIIAAATLS 368 (854)
T ss_dssp HTTCTTTCSCCCC-EEECCCCHHHHHHHH----HHHHHHHHH---HTT--CEECHHHHHHHHHHH
T ss_pred hccCHHHHhCCce-EEeCCCCHHHHHHHH----Hhhhhhhhh---hcC--CCCCHHHHHHHHHHH
Confidence 4467899999996 899999999999999 566665543 234 467899999888865
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=36.85 E-value=11 Score=35.25 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=19.3
Q ss_pred cccchhhhcccCCCCcceeccccCcchHHHHHHHHHH
Q psy11091 242 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSA 278 (408)
Q Consensus 242 GIvfldE~dkia~~~~~~~tRDV~gedv~~~l~kll~ 278 (408)
.++||||+|++................|+..|+.++.
T Consensus 101 ~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp CCEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred eEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 5779999999876433222223345678899999986
No 112
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=35.22 E-value=22 Score=32.18 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=39.2
Q ss_pred cCCCccccccCCceeecCC--------CCHHHHHhhcccchHHHHHHHHHHhccCCceEE
Q psy11091 127 FGMIPEFVGRFPILVPFHS--------LNQELLVRILTEPKNAMIQQYQILFTMDKVDLT 178 (408)
Q Consensus 127 ~Gf~PEFlgRLd~IV~F~p--------Ls~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ 178 (408)
-.+-||=||+|++.+.++. -...+..++| +.-+.++++.|+..|+.|.
T Consensus 91 IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaL----e~~lp~LRe~La~qGi~L~ 146 (169)
T 2rrl_A 91 LRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAAL----EAALPMLRTQLAESGIQLG 146 (169)
T ss_dssp ECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHH----HHTHHHHHHHHHTTTCEEE
T ss_pred EEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHH----HHHHHHHHHHHHHcCCCee
Confidence 3478999999999888775 3345778888 7778999999999999874
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.65 E-value=39 Score=29.84 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=44.2
Q ss_pred Cccccc--cCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHH-HHHHHHHHhhccCCcchhHHHHHH
Q psy11091 130 IPEFVG--RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPE-ALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 130 ~PEFlg--RLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~-Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
.|.++. |++..+.|.+++.++..+|+ ...+++. + +..+++ +.+.|++.. .++-.|.|+.+++
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il----~~~~~~~-------~--~~~~~~~~~~~l~~~~--~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIF----EQHLKSL-------K--LTQSSTFYSQRLAELT--PGFSGADIANICN 223 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHH----HHHHHHT-------T--CCBTHHHHHHHHHHTC--TTCCHHHHHHHHH
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHH----HHHHHhC-------C--CCcchhhHHHHHHHHC--CCCCHHHHHHHHH
Confidence 356665 99999999999999999888 3433322 2 223443 346666543 4555678888887
Q ss_pred Hhhhhh
Q psy11091 207 SLLLDS 212 (408)
Q Consensus 207 ~~L~d~ 212 (408)
+.....
T Consensus 224 ~a~~~a 229 (262)
T 2qz4_A 224 EAALHA 229 (262)
T ss_dssp HHHTC-
T ss_pred HHHHHH
Confidence 766544
No 114
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=34.53 E-value=12 Score=31.69 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.4
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
++|||||.|.=
T Consensus 4 ~~VLFVC~gN~ 14 (139)
T 1jl3_A 4 KIIYFLCTGNS 14 (139)
T ss_dssp EEEEEEESSSS
T ss_pred CeEEEEcCCch
Confidence 48999999983
No 115
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=34.35 E-value=47 Score=31.21 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=46.0
Q ss_pred CccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhh
Q psy11091 130 IPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLL 209 (408)
Q Consensus 130 ~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L 209 (408)
.|.+..|. .++.|.+++.+++.+.+ ++.++..|+ .++++|++.|++.+ +...|.+...++++.
T Consensus 127 ~~~i~sr~-~~~~~~~l~~~~l~~~l-----------~~~~~~~g~--~i~~~a~~~l~~~~---~gdl~~~~~elekl~ 189 (343)
T 1jr3_D 127 FTALANRS-VQVTCQTPEQAQLPRWV-----------AARAKQLNL--ELDDAANQVLCYCY---EGNLLALAQALERLS 189 (343)
T ss_dssp HHHHTTTC-EEEEECCCCTTHHHHHH-----------HHHHHHTTC--EECHHHHHHHHHSS---TTCHHHHHHHHHHHH
T ss_pred HHHHHhCc-eEEEeeCCCHHHHHHHH-----------HHHHHHcCC--CCCHHHHHHHHHHh---chHHHHHHHHHHHHH
Confidence 34455555 58899999998887777 333445564 68999999999875 346777878888876
Q ss_pred h
Q psy11091 210 L 210 (408)
Q Consensus 210 ~ 210 (408)
.
T Consensus 190 l 190 (343)
T 1jr3_D 190 L 190 (343)
T ss_dssp H
T ss_pred H
Confidence 4
No 116
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.86 E-value=13 Score=33.84 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=21.9
Q ss_pred hccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 280 AAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 280 a~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
+..++|||||+|++.. ..|..|++++|.
T Consensus 101 ~~~~vliiDe~~~l~~-------------~~~~~L~~~le~ 128 (319)
T 2chq_A 101 APFKIIFLDEADALTA-------------DAQAALRRTMEM 128 (319)
T ss_dssp CCCEEEEEETGGGSCH-------------HHHHTTGGGTSS
T ss_pred CCceEEEEeCCCcCCH-------------HHHHHHHHHHHh
Confidence 4578999999999853 246788998885
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=31.52 E-value=28 Score=32.39 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=11.6
Q ss_pred eEEeecccccccc
Q psy11091 284 IVFLDEVDKIGAV 296 (408)
Q Consensus 284 ivfideidki~~~ 296 (408)
+|||||||.+...
T Consensus 133 vlilDEi~~l~~~ 145 (387)
T 2v1u_A 133 IIVLDEIDFLPKR 145 (387)
T ss_dssp EEEEETTTHHHHS
T ss_pred EEEEccHhhhccc
Confidence 9999999999754
No 118
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.33 E-value=17 Score=39.53 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhh---ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 269 VQQGMLKVSALA---AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 269 v~~~l~kll~~a---~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
.+..+..+++.| ..+|+||||||.++...+.. .+-...-++..||.+++|
T Consensus 282 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhh
Confidence 344444555544 45799999999999764321 111123456667777665
No 119
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.68 E-value=46 Score=31.33 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=37.6
Q ss_pred CCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHh
Q psy11091 128 GMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLA 191 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a 191 (408)
.+.|-+..|+. ++.|.+++.+++.+++ .. .++..++ .+++++.+.|++.+
T Consensus 152 ~i~~~i~sR~~-~~~~~~l~~~~~~~~l----~~-------~~~~~~~--~i~~~~~~~i~~~s 201 (340)
T 1sxj_C 152 KLTPALLSQCT-RFRFQPLPQEAIERRI----AN-------VLVHEKL--KLSPNAEKALIELS 201 (340)
T ss_dssp GSCHHHHTTSE-EEECCCCCHHHHHHHH----HH-------HHHTTTC--CBCHHHHHHHHHHH
T ss_pred ccchhHHhhce-eEeccCCCHHHHHHHH----HH-------HHHHcCC--CCCHHHHHHHHHHc
Confidence 36677888886 7899999999988887 22 2233454 47899999999876
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=28.53 E-value=30 Score=32.50 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=11.7
Q ss_pred eEEeecccccccc
Q psy11091 284 IVFLDEVDKIGAV 296 (408)
Q Consensus 284 ivfideidki~~~ 296 (408)
||||||||.+...
T Consensus 136 vlilDEi~~l~~~ 148 (384)
T 2qby_B 136 IIYLDEVDTLVKR 148 (384)
T ss_dssp EEEEETTHHHHHS
T ss_pred EEEEECHHHhccC
Confidence 9999999999754
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.87 E-value=28 Score=33.86 Aligned_cols=25 Identities=0% Similarity=-0.011 Sum_probs=17.3
Q ss_pred HHHHHHHHHh-----hccceEEeecccccc
Q psy11091 270 QQGMLKVSAL-----AAFGIVFLDEVDKIG 294 (408)
Q Consensus 270 ~~~l~kll~~-----a~~Givfideidki~ 294 (408)
.+.|.+++.. ...-||||||||.+.
T Consensus 116 ~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 116 LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 3445555543 245799999999998
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=27.71 E-value=26 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=21.9
Q ss_pred ccceEEeeccccccccCCCccccCCCcccccccccccccc
Q psy11091 281 AFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTS 320 (408)
Q Consensus 281 ~~Givfideidki~~~~~~~~~~dvs~egvQ~~ll~~~eg 320 (408)
..+||||||||.+.. ...|..|++++|.
T Consensus 105 ~~~vliiDEi~~l~~------------~~~~~~L~~~le~ 132 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL------------AESQRHLRSFMEA 132 (324)
T ss_dssp CEEEEEEESCCCGGG------------HHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCc------------HHHHHHHHHHHHh
Confidence 678999999999961 2257789988884
No 123
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=27.04 E-value=21 Score=29.64 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=8.6
Q ss_pred ceeEEecCCC
Q psy11091 51 NILFVASGAY 60 (408)
Q Consensus 51 NILFI~~GAF 60 (408)
+|||||.|.=
T Consensus 1 ~VLFVC~gN~ 10 (124)
T 1y1l_A 1 KVLFVCIHNT 10 (124)
T ss_dssp CEEEEESSCS
T ss_pred CEEEEeCCCh
Confidence 6999999983
No 124
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=26.79 E-value=16 Score=31.72 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.9
Q ss_pred CCceeEEecCCC
Q psy11091 49 TTNILFVASGAY 60 (408)
Q Consensus 49 TsNILFI~~GAF 60 (408)
..+|||||.|.=
T Consensus 7 ~~~VLFVCtgN~ 18 (161)
T 1d1q_A 7 KISVAFIALGNF 18 (161)
T ss_dssp CEEEEEEESSSS
T ss_pred CCEEEEEcCCcH
Confidence 458999999983
No 125
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=26.30 E-value=22 Score=31.60 Aligned_cols=10 Identities=40% Similarity=0.746 Sum_probs=8.8
Q ss_pred ceeEEecCCC
Q psy11091 51 NILFVASGAY 60 (408)
Q Consensus 51 NILFI~~GAF 60 (408)
+|||||.|.-
T Consensus 20 kVLFVCtGNi 29 (173)
T 4etm_A 20 SVLFVCLGNI 29 (173)
T ss_dssp EEEEEESSSS
T ss_pred EEEEEeCCcc
Confidence 8999999963
No 126
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=26.08 E-value=33 Score=28.76 Aligned_cols=23 Identities=9% Similarity=0.456 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHhhccceEEeec
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDE 289 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfide 289 (408)
-|++++.+.+|++. +.|||+|+|
T Consensus 30 ~ee~~~~~~~l~~~-digIIlIte 52 (115)
T 3aon_B 30 KTEIRKTIDEMAKN-EYGVIYITE 52 (115)
T ss_dssp HHHHHHHHHHHHHT-TEEEEEEEH
T ss_pred HHHHHHHHHHHHhc-CceEEEEeH
Confidence 47899999999998 999999987
No 127
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=25.61 E-value=44 Score=27.12 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHhhccceEEeeccccccc
Q psy11091 265 GGEGVQQGMLKVSALAAFGIVFLDEVDKIGA 295 (408)
Q Consensus 265 ~gedv~~~l~kll~~a~~Givfideidki~~ 295 (408)
+-|++++.+.+|++.-+.|||+|.| +++.
T Consensus 28 ~~ee~~~~~~~l~~~~digIIlite--~~a~ 56 (101)
T 2ov6_A 28 DIPATESAVRSVLEDKSVGILVMHN--DDIG 56 (101)
T ss_dssp STTTHHHHHHHHHHHTSSSEEEEEH--HHHT
T ss_pred CHHHHHHHHHHHhhCCCeEEEEEcH--HHHH
Confidence 3478999999999988999999998 4444
No 128
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=25.32 E-value=25 Score=30.25 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=9.6
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 9 ~~VLFVC~gN~ 19 (150)
T 2wmy_A 9 DSILVICTGNI 19 (150)
T ss_dssp CEEEEEESSSS
T ss_pred CEEEEEcCCch
Confidence 58999999983
No 129
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.28 E-value=58 Score=33.02 Aligned_cols=58 Identities=10% Similarity=0.262 Sum_probs=39.0
Q ss_pred ccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHh
Q psy11091 135 GRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESL 208 (408)
Q Consensus 135 gRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~ 208 (408)
.|....+.|.+++.+++.++| ..... ..++ .+++++++.|++.+ .--.|.+..+++..
T Consensus 198 ~~r~~~i~f~~~~~~~~~~~L----~~i~~-------~~~~--~i~~~~l~~la~~s---~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 198 DRVCLDIQFRRPDANSIKSRL----MTIAI-------REKF--KLDPNVIDRLIQTT---RGDIRQVINLLSTI 255 (516)
T ss_dssp TTTSEEEECCCCCHHHHHHHH----HHHHH-------HHTC--CCCTTHHHHHHHHT---TTCHHHHHHHHTHH
T ss_pred HhceEEEEeCCCCHHHHHHHH----HHHHH-------HcCC--CCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 455668999999999999888 22222 2243 47899999999875 11256665555544
No 130
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=24.93 E-value=24 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.1
Q ss_pred eCCceeEEecCCC
Q psy11091 48 DTTNILFVASGAY 60 (408)
Q Consensus 48 DTsNILFI~~GAF 60 (408)
.+-+|||||.|.-
T Consensus 33 ~~mkVLFVC~GNi 45 (180)
T 4egs_A 33 GSMRVLFVCTGNT 45 (180)
T ss_dssp -CCEEEEEESSSS
T ss_pred CCeEEEEEeCCCc
Confidence 4458999999984
No 131
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=24.91 E-value=98 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCccccc--cCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHH
Q psy11091 129 MIPEFVG--RFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIME 206 (408)
Q Consensus 129 f~PEFlg--RLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe 206 (408)
+.|.++- |++.++.|..++.++..+|+ ...++ ..++. .+-.++.||+. ..+|-.+-|+.+++
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il----~~~l~-------~~~~~---~~~~~~~la~~--~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAIL----KANLR-------KSPVA---KDVDLEFLAKM--TNGFSGADLTEICQ 230 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHH----HHHHT-------TSCBC---SSCCHHHHHHT--CSSCCHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHH----HHHHc-------cCCCC---ccchHHHHHHH--cCCCCHHHHHHHHH
Confidence 3455554 99999999999999988888 33322 22322 12224566664 34555558998888
Q ss_pred Hhhhhhhcc
Q psy11091 207 SLLLDSMYE 215 (408)
Q Consensus 207 ~~L~d~l~d 215 (408)
+.+..++.+
T Consensus 231 ~a~~~a~~~ 239 (301)
T 3cf0_A 231 RACKLAIRE 239 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 132
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=24.37 E-value=23 Score=30.83 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=9.4
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 5 ~~VLFVC~gN~ 15 (161)
T 2cwd_A 5 VRVLFVCLGNI 15 (161)
T ss_dssp EEEEEEESSSS
T ss_pred CEEEEECCCcH
Confidence 48999999983
No 133
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=24.18 E-value=26 Score=29.84 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=9.4
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 5 ~~VLFVC~gN~ 15 (146)
T 1p8a_A 5 KAVLFVCLGNI 15 (146)
T ss_dssp CCEEEESSSSC
T ss_pred CEEEEEcCCcH
Confidence 48999999973
No 134
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=23.73 E-value=40 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHhhccceEEeecccccccc
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDEVDKIGAV 296 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfideidki~~~ 296 (408)
-|++++.+.+|++.-+.|||+|.| ++|..
T Consensus 38 ~ee~~~~~~~l~~~~digIIlIte--~ia~~ 66 (102)
T 2i4r_A 38 DEEIVKAVEDVLKRDDVGVVIMKQ--EYLKK 66 (102)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEG--GGSTT
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeH--HHHHH
Confidence 478999999999877889999998 45543
No 135
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=23.66 E-value=26 Score=30.40 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=9.4
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 5 ~~VLFVC~gN~ 15 (163)
T 1u2p_A 5 LHVTFVCTGNI 15 (163)
T ss_dssp EEEEEEESSSS
T ss_pred CEEEEEcCCcH
Confidence 48999999983
No 136
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=23.59 E-value=24 Score=30.75 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.5
Q ss_pred eCCceeEEecCCC
Q psy11091 48 DTTNILFVASGAY 60 (408)
Q Consensus 48 DTsNILFI~~GAF 60 (408)
...+|||||.|.=
T Consensus 4 ~~~~vLFVC~gN~ 16 (157)
T 3n8i_A 4 ATKSVLFVCLGNI 16 (157)
T ss_dssp CCEEEEEEESSSS
T ss_pred CCCEEEEECCCch
Confidence 3568999999983
No 137
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.13 E-value=52 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHhhccceEEeec
Q psy11091 266 GEGVQQGMLKVSALAAFGIVFLDE 289 (408)
Q Consensus 266 gedv~~~l~kll~~a~~Givfide 289 (408)
.|++++.+.+|++.-+.|||+|.|
T Consensus 31 ~ee~~~~~~~l~~~~digIIlIte 54 (109)
T 2d00_A 31 AEEAQSLLETLVERGGYALVAVDE 54 (109)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEEET
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeH
Confidence 478999999999888999999998
No 138
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=23.04 E-value=27 Score=30.30 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=18.7
Q ss_pred hcCCCccccccCCceeecCCCCHHHHHhhcc
Q psy11091 126 DFGMIPEFVGRFPILVPFHSLNQELLVRILT 156 (408)
Q Consensus 126 k~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILt 156 (408)
...+.++.+...|.|+.+..=..++|.+...
T Consensus 71 ar~l~~~d~~~~DlIi~Md~~~~~~l~~~~p 101 (156)
T 2gi4_A 71 SKKLTQKLCDESDFLITMDNSNFKNVLKNFT 101 (156)
T ss_dssp CCBCCHHHHTTCSEEECCCHHHHHHHHHHSC
T ss_pred cccCCHHHhccCCEEEEECChHHHHHHHHCC
Confidence 3335556666678887776555555555553
No 139
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=22.76 E-value=27 Score=29.46 Aligned_cols=19 Identities=0% Similarity=0.009 Sum_probs=12.9
Q ss_pred hhcCCCccccccCCceeec
Q psy11091 125 IDFGMIPEFVGRFPILVPF 143 (408)
Q Consensus 125 ik~Gf~PEFlgRLd~IV~F 143 (408)
....+.++.+...|.|+.+
T Consensus 64 ~sr~l~~~~~~~~DlIi~m 82 (134)
T 2l17_A 64 TSDPIENFNADDYDVVISL 82 (134)
T ss_dssp CCCCGGGCCGGGCSEEEEC
T ss_pred ccccCChHHhccCCEEEEe
Confidence 3344556666777888888
No 140
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=22.19 E-value=30 Score=30.57 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=9.6
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 27 ~~VLFVCtgNi 37 (168)
T 2wja_A 27 DSILVICTGNI 37 (168)
T ss_dssp SEEEEEESSSS
T ss_pred CEEEEEcCCcH
Confidence 58999999983
No 141
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.95 E-value=44 Score=34.48 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=19.8
Q ss_pred HHHHHHHHhhc---cceEEeeccccccccC
Q psy11091 271 QGMLKVSALAA---FGIVFLDEVDKIGAVP 297 (408)
Q Consensus 271 ~~l~kll~~a~---~Givfideidki~~~~ 297 (408)
+.+..+.+.|. .+|+||||||.++...
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r 139 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCS
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhh
Confidence 34556666664 3899999999998653
No 142
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=21.91 E-value=50 Score=34.64 Aligned_cols=62 Identities=8% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCccccccCCceeecCC-CCHHH----HHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh
Q psy11091 128 GMIPEFVGRFPILVPFHS-LNQEL----LVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192 (408)
Q Consensus 128 Gf~PEFlgRLd~IV~F~p-Ls~e~----L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~ 192 (408)
.+.+-++.|||.++.... .+.+. ...+++ ...|++|.+..+...+...+++++.++|++.-.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 467778888887665433 22111 222332 345677776655456678999999999988654
No 143
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=21.20 E-value=33 Score=30.27 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=9.5
Q ss_pred CceeEEecCCC
Q psy11091 50 TNILFVASGAY 60 (408)
Q Consensus 50 sNILFI~~GAF 60 (408)
.+|||||.|.=
T Consensus 23 ~~VLFVCtgN~ 33 (167)
T 2fek_A 23 NNILVVCVGNI 33 (167)
T ss_dssp CEEEEEESSSS
T ss_pred CeEEEEcCCcH
Confidence 48999999983
No 144
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=20.70 E-value=1.2e+02 Score=31.10 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=50.9
Q ss_pred CCccccccCCceeecCCCCH-HHHHhhcccch--------------HHHHHHHHHHhccCCceEEeCHHHHHHHHHHhh-
Q psy11091 129 MIPEFVGRFPILVPFHSLNQ-ELLVRILTEPK--------------NAMIQQYQILFTMDKVDLTFSPEALQAIARLAL- 192 (408)
Q Consensus 129 f~PEFlgRLd~IV~F~pLs~-e~L~~ILtePk--------------~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~- 192 (408)
|.+.++.|+...+.+.+++. ++...|+..-. ...+.++++.+. .+.++++++++|++..-
T Consensus 165 ~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~----~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 165 SLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG----EITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp TTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT----TCBCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC----cccCchHHHHHHHHHHHH
Confidence 44569999988899999987 67778775311 123444544433 35678999999998763
Q ss_pred ------ccCCcchhHHHHHHH
Q psy11091 193 ------EKKTGARGLRAIMES 207 (408)
Q Consensus 193 ------d~~~GAR~LrriIe~ 207 (408)
....+.|.+..++.-
T Consensus 241 lr~~r~~~~iS~R~~~~llr~ 261 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRL 261 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHH
T ss_pred hhcCCCCCccchhHHHHHHHH
Confidence 245677888777654
No 145
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=20.54 E-value=35 Score=29.60 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=10.0
Q ss_pred CCceeEEecCCC
Q psy11091 49 TTNILFVASGAY 60 (408)
Q Consensus 49 TsNILFI~~GAF 60 (408)
..+|||||.|.=
T Consensus 20 ~~~VLFVC~gN~ 31 (148)
T 3rh0_A 20 MKSVLFVCVGNG 31 (148)
T ss_dssp CCEEEEEESSSS
T ss_pred CCEEEEECCCch
Confidence 458999999983
No 146
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=20.28 E-value=65 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=42.1
Q ss_pred ccccccCCceeecCCCCHHHHHhhcccchHHHHHHHHHHhccCCceEEeCHHHHHHHHHHhhccC---CcchhHHHHHHH
Q psy11091 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKK---TGARGLRAIMES 207 (408)
Q Consensus 131 PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~---~GAR~LrriIe~ 207 (408)
|....|+...+.|.||+.+++.+++ ...+. ..+.. ..+++++++.|++.+-... --+|.+..+++.
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll----~~~~~---~~~~~----~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~ 268 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTIL----EQRAE---LGLRD----TVWEPRHLELISDVYGEDKGGDGSARRAIVALKM 268 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHH----HHHHH---HHBCT----TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHH
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHH----HHHHH---hcCCC----CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 3344566666999999999999998 22222 22221 2378899999988875322 224555555554
Q ss_pred hh
Q psy11091 208 LL 209 (408)
Q Consensus 208 ~L 209 (408)
.+
T Consensus 269 a~ 270 (412)
T 1w5s_A 269 AC 270 (412)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!