RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11091
(408 letters)
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 264 bits (678), Expect = 1e-85
Identities = 94/223 (42%), Positives = 134/223 (60%), Gaps = 26/223 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGF 78
LL ++EG++VN+P K RK G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 171 LLKIVEGSLVNIPPKGG-RKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF 229
Query: 79 GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
KE++A L V+ DL+ +G+IPE +GR P
Sbjct: 230 TQEK------------------------MSKKEQEAILHLVQTHDLVTYGLIPELIGRLP 265
Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
+L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGA
Sbjct: 266 VLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGA 325
Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
RGLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 326 RGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 368
Score = 52.6 bits (127), Expect = 9e-08
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
+GIVF+DE+DKI I RDV GEGVQQ +LK+
Sbjct: 138 KGIVFIDEIDKISRLSENRSI--TRDVSGEGVQQALLKI 174
Score = 51.1 bits (123), Expect = 3e-07
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 317
A GIVF+DE+DKI I RDV GEGVQQ +LK+
Sbjct: 136 AQKGIVFIDEIDKISRLSENRSI--TRDVSGEGVQQALLKI 174
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 262 bits (672), Expect = 5e-85
Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 25/226 (11%)
Query: 20 LLCMLEGTIVNVPEKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEK-YLG 77
LL ++EGT+ VP + RK + E +QVDT+ ILF+ GA+ GLD++IS R +G
Sbjct: 150 LLKLIEGTVAAVPPQGG-RKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIG 208
Query: 78 FGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRF 137
FGA V A+ D + L QVE DLI FG+IPEF+GR
Sbjct: 209 FGAT---------------------VKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 247
Query: 138 PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTG 197
P++ + L++E L++IL EPKNA+ +QYQ LF ++ VDL F EAL AIA+ A+ +KTG
Sbjct: 248 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 307
Query: 198 ARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIRG 242
ARGLR+I+E+ LLD+MY++P D+ V I E + + P I G
Sbjct: 308 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 353
Score = 52.6 bits (127), Expect = 9e-08
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 241 RGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 276
RGIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 117 RGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
Score = 51.0 bits (123), Expect = 3e-07
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 280 AAFGIVFLDEVDKI---GAVPGIHQLRDVGGEGVQQGMLKV 317
A GIV++D++DKI P I RDV GEGVQQ +LK+
Sbjct: 115 AQRGIVYIDQIDKISRKSDNPSI--TRDVSGEGVQQALLKL 153
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 145 bits (367), Expect = 2e-40
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 185 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 244
Query: 189 RLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
A + GAR L +ME L+ + + V+I V
Sbjct: 245 EAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298
Score = 52.7 bits (127), Expect = 7e-08
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK------VSTSY 321
GIVF+DE+DKI G + DV EGVQ+ +L VST +
Sbjct: 118 GIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 161
Score = 51.9 bits (125), Expect = 1e-07
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVF+DE+DKI G + DV EGVQ+ +L +
Sbjct: 117 NGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPL 151
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 11/40 (27%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGA 59
LL ++EG+ V+ + V T +ILF+ASGA
Sbjct: 148 LLPLVEGSTVST-----------KHGMVKTDHILFIASGA 176
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 105 bits (264), Expect = 4e-25
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 378
Query: 189 RLALE--KKT---GARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKN 234
A +KT GAR L +ME L+ + + V+I V
Sbjct: 379 EAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADA 429
Score = 30.8 bits (70), Expect = 0.90
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 282 FGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GIVF+DE+DKI G + DV EGVQ+ +L +
Sbjct: 251 NGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPL 285
Score = 30.8 bits (70), Expect = 0.94
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVF+DE+DKI G + DV EGVQ+ +L +
Sbjct: 251 NGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPL 285
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 7e-12
Identities = 64/281 (22%), Positives = 95/281 (33%), Gaps = 92/281 (32%)
Query: 25 EGTIVNVPEKNSP----RKLRGEMVQ--VDTTNILFVASGA-----YNGLDRL-ISRRKN 72
EG P SP L E VQ V+ TN A NG L +S
Sbjct: 332 EGV----P---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---- 380
Query: 73 EKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDF-GMIP 131
G P SL L A L Q +R I F
Sbjct: 381 ------GPP---------QSLYGLNLTLRKAKAPSG-------LDQ--SR--IPFSERKL 414
Query: 132 EFVGRF-PILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
+F RF P+ PFHS LL P + +I + + K +++F+ + +Q I
Sbjct: 415 KFSNRFLPVASPFHS---HLL-----VPASDLINK-----DLVKNNVSFNAKDIQ-IPVY 460
Query: 191 ALEKKTGARGLRAIMESL---LLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLD 247
G+ LR + S+ ++D + +P V T ++I + F
Sbjct: 461 DTF--DGSD-LRVLSGSISERIVDCIIRLP------VKWETTT---QFKATHI--LDF-- 504
Query: 248 EVDKIGAVPGIHQL--RDVGGEGVQ---QGMLKVSALAAFG 283
G G+ L R+ G GV+ G L ++ +G
Sbjct: 505 ---GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 41.6 bits (97), Expect = 5e-04
Identities = 43/252 (17%), Positives = 78/252 (30%), Gaps = 102/252 (40%)
Query: 95 DLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGM-IPEFVGRFPILVPFH-------SL 146
DL S A +D + + + +G I + V P+ + H +
Sbjct: 1634 DLYKTSKAA--------QDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 147 NQELLVRILTEPKNAMIQQYQILFTMDKV--DLTF-SPEAL-------Q-AIARLALEKK 195
+ I + ++ +I +++ TF S + L Q A+ +EK
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--TLMEK- 1741
Query: 196 TGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAV 255
A E LK+ +G++ D
Sbjct: 1742 -------AAFE------------------------DLKS------KGLIPADAT-----F 1759
Query: 256 PGIHQLRDVGGEGVQQGMLKVSALAAF-GIVFLDEVDKI----G-----AVPGIHQLRDV 305
G H L GE +ALA+ ++ ++ + ++ G AVP RD
Sbjct: 1760 AG-HSL----GE--------YAALASLADVMSIESLVEVVFYRGMTMQVAVP-----RDE 1801
Query: 306 GGEGVQQGMLKV 317
G GM+ +
Sbjct: 1802 LGRS-NYGMIAI 1812
Score = 41.2 bits (96), Expect = 6e-04
Identities = 60/314 (19%), Positives = 101/314 (32%), Gaps = 83/314 (26%)
Query: 52 ILFVAS-------GAYNGLDRLISRRKNEKYLG----------FGAPSTESAGRRAASLA 94
+ +V+S G ++ + L YL + + + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 95 DLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRI 154
+ D K A + V + ++ F G+ F +EL R
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDYF----EEL--RD 175
Query: 155 LTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALE-KKTGARGLRAIMESLLLDSM 213
L + + ++ + FS E L + R L+ +K +GL I+E L++
Sbjct: 176 LYQTYHVLVGDL----------IKFSAETLSELIRTTLDAEKVFTQGLN-ILE--WLENP 222
Query: 214 YEVPGSDILMVHITEDTVLKNTAP-SY--IRGIV----FLDEVDKIGAVPGIHQLRDV-- 264
P D L + P S I G++ ++ +G PG +LR
Sbjct: 223 SNTPDKDYL-----------LSIPISCPLI-GVIQLAHYVVTAKLLGFTPG--ELRSYLK 268
Query: 265 GGEGVQQGMLKVSALAAFGIV--FLDEVDK-------IGA-----------VPGIHQLRD 304
G G QG++ A+A F V K IG P I +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 305 VGGEGVQQGMLKVS 318
EGV ML +S
Sbjct: 329 ENNEGVPSPMLSIS 342
Score = 30.4 bits (68), Expect = 1.4
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 18/51 (35%)
Query: 24 LEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEK 74
+E IVN N + Q VA+G LD + + K
Sbjct: 1841 VE--IVNY---NVE----NQ--QY-------VAAGDLRALDTVTNVLNFIK 1873
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 48.0 bits (115), Expect = 4e-06
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEF R ++ F L+ +++ +++ + I + Q+ V L S EA +A
Sbjct: 638 PEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQVQLDQKGVSLEVSQEARNWLAEK 693
Query: 191 ALEKKTGARGL-RAIMESL 208
++ GAR + R I ++L
Sbjct: 694 GYDRAMGARPMARVIQDNL 712
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 41.0 bits (97), Expect = 5e-04
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEF+ R ++ FHSL ++ L I+ + M Q + + + A +A
Sbjct: 647 PEFINRIDEIIVFHSLEKKHLTEIV----SLMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702
Query: 191 ALEKKTGARGLRAIMESLLLDSMYE-------VPGSDILMVHITEDTVLKNTAPS 238
++ + GAR LR ++ + D + E G I++ + V+K TA +
Sbjct: 703 GVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGEFVVKTTAKT 757
>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme,
pneumococcal cell WALL degradation, hydrolase,
glycosidase, multimodular; HET: NAG AMV; 1.69A
{Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB:
2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A
Length = 339
Score = 38.8 bits (90), Expect = 0.002
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 326 YPNTGYLWYRYPNTGYIWYRYPNTGYI-WYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWY 384
Y + + I ++PN+ +I Y + + +P+ + + ++
Sbjct: 125 YSYKPFTHD-NVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDK 183
Query: 385 RYPKTGYLWYRYPNTGYLW 403
P T W
Sbjct: 184 NIVLLDDEEDDKPKTAGTW 202
Score = 38.4 bits (89), Expect = 0.003
Identities = 12/112 (10%), Positives = 35/112 (31%), Gaps = 20/112 (17%)
Query: 314 MLKVSTSYLFYRYPNTGYLWYRYPNTGYI-WYRYPNT-----------GYIWYRYPNTGY 361
+ + + + ++PN+ +I Y + G W++Y + +
Sbjct: 123 IYYSYKPFTHD-NVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPF 181
Query: 362 LWTSYPNTGYLWYRYP-------NTGCIWYRYPKTGYLWYRYPNTGYLWYRY 406
+ ++ W+R + + ++ G +WY +
Sbjct: 182 DKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYF 233
Score = 36.1 bits (83), Expect = 0.015
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 19/105 (18%)
Query: 316 KVSTSYLFYRYPNTGYL-WYRYPNTGYIWYRYPNT-GYIWYRYPNTGYLWTSYPNTGYL- 372
V + ++PN+ ++ Y + + +P+ G W++Y + +
Sbjct: 134 NVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEED 193
Query: 373 ----------------WYRYPNTGCIWYRYPKTGYLWYRYPNTGY 401
W+R N + ++ K G +WY + + GY
Sbjct: 194 DKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGY 238
Score = 31.1 bits (70), Expect = 0.62
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 338 NTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYL-WYRYPNTGCIWYRYPKTGYLWYRY 396
+ GY Y + + + +PN+ ++ Y + + +P + +
Sbjct: 117 DAGYKPIYYSYKPFTHD-NVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQ 175
Query: 397 PNTGYLWYRY 406
++
Sbjct: 176 YSSNPFDKNI 185
Score = 30.3 bits (68), Expect = 1.1
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 323 FYRYPNTGYLWYRYPNTGYIWYRYPNTGYI-----------WYRYPNTGYLWTSYPNTGY 371
++R N + + ++ G +WY + + GY WY + G + T + G
Sbjct: 210 WFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGS 269
Query: 372 LWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWY 404
WY ++G + TG W +Y N WY
Sbjct: 270 EWYYMDDSGAM-----VTG--WVKYKNN---WY 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 38.7 bits (91), Expect = 0.002
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEF+ R +V F L +E + +I+ + + ++ L + A +A
Sbjct: 201 PEFLNRLDEIVVFRPLTKEQIRQIV----EIQMSYLRARLAEKRISLELTEAAKDFLAER 256
Query: 191 ALEKKTGARGL-RAI 204
+ GAR L R I
Sbjct: 257 GYDPVFGARPLRRVI 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.004
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 35/173 (20%)
Query: 113 DAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTM 172
DAF+ + +D+ D P L++E + I+ +A+ ++ +T+
Sbjct: 27 DAFVDNFDCKDVQDM--------------PKSILSKEEIDHIIMSK-DAVSGTLRLFWTL 71
Query: 173 DKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVL 232
L+ E +Q L +M + + P S + ++I + L
Sbjct: 72 ----LSKQEEMVQKFVEEVLRINYK-----FLMSP--IKTEQRQP-SMMTRMYIEQRDRL 119
Query: 233 KNTAPSYIRGIVF-LDEVDKIGAVPGIHQLRDVGGEGVQQGML---KVSALAA 281
N + + V L K+ + +LR + G+L K + +A
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLI-DGVLGSGK-TWVAL 168
Score = 37.1 bits (85), Expect = 0.012
Identities = 63/391 (16%), Positives = 109/391 (27%), Gaps = 148/391 (37%)
Query: 6 CVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDR 65
C +P+ L + KLL ++ + + +S KLR +Q L R
Sbjct: 192 CNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--------------AELRR 236
Query: 66 LISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQ----VEA 121
L+ + E L L N V + K +AF +
Sbjct: 237 LLKSKPYEN-----------------CLLVLLN----VQ---NAKAWNAFNLSCKILLTT 272
Query: 122 RD--LIDFGMIPEFVGRFPI------LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMD 173
R + DF + + L P LL++ L
Sbjct: 273 RFKQVTDF-LSAATTTHISLDHHSMTLTPDEVK--SLLLKYL---------------DCR 314
Query: 174 KVDL-----TFSPEALQAIARLALE--------KKTGARGLRAIMESLL--LDS-----M 213
DL T +P L IA + K L I+ES L L+ M
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 214 YEVPGSDILM--VHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQ 271
++ + HI +L +++ D + DV V
Sbjct: 375 FDRLS--VFPPSAHIPTI-LL---------SLIWFDVIK-----------SDV--MVVVN 409
Query: 272 GMLKVSALA------AFGI--VFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLF 323
+ K S + I ++L+ K+ +H+ + Y
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------------SIVDHYNI 455
Query: 324 YR-YPNTGYLWYRYPNT--GYIWYRYPNTGY 351
+ + + P Y +Y + G+
Sbjct: 456 PKTFDS----DDLIPPYLDQY-FYSH--IGH 479
Score = 31.7 bits (71), Expect = 0.53
Identities = 48/326 (14%), Positives = 97/326 (29%), Gaps = 82/326 (25%)
Query: 1 MEAVTCVAPDVETLVHMWKLLCMLEG-----TIVNVPEKNSPRKLRGEMVQVDTTNILFV 55
+ ++ +L H L E ++ ++ PR +V TTN +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------EVLTTNPRRL 330
Query: 56 AS-GAYNGLDRLISRRKNEKYLGFGAPST---------ESAGRRAASLADLA--NQSAAV 103
+ + ++ N K++ +T E A R L+ SA +
Sbjct: 331 SIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHI 387
Query: 104 SA--------EEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRIL 155
+ + + ++ L++ + S+ EL V++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQPKESTISIPSIYLELKVKLE 440
Query: 156 TEPK--NAMIQQYQILFTMDKVDLTFSPE---ALQAIAR-LALEKKTGARGLRAIMESLL 209
E +++ Y I T D DL I L K + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL---KNIEHPERMTLFRMVF 497
Query: 210 LD------------SMYEVPGS--DILMV------HITEDTVLKNTAPSYIRGI-VFLDE 248
LD + + GS + L +I ++ P Y R + LD
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND------PKYERLVNAILDF 551
Query: 249 VDKIGAVPGIHQLRDVGGEGVQQGML 274
+ KI + D+ ++ ++
Sbjct: 552 LPKIEENLICSKYTDL----LRIALM 573
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 37.1 bits (87), Expect = 0.010
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 131 PEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARL 190
PEF+ R +V F L +E + +I+ + + ++ L + A +A
Sbjct: 742 PEFLNRLDEIVVFRPLTKEQIRQIV----EIQLSYLRARLAEKRISLELTEAAKDFLAER 797
Query: 191 ALEKKTGARGL-RAI 204
+ GAR L R I
Sbjct: 798 GYDPVFGARPLRRVI 812
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 33.0 bits (74), Expect = 0.20
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Query: 305 VGGEGVQQGMLKVSTSY--LFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYL 362
+GG K Y + + T Y + + W G +
Sbjct: 303 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSV 362
Query: 363 WTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNT 399
+ + P+T WY +G K P+
Sbjct: 363 FQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDA 398
Score = 27.6 bits (60), Expect = 9.1
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 335 RYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWY 394
Y + W PN + L Y + + W G ++ P T WY
Sbjct: 318 VYSPSSKTWTSLPNAKVNPMLTADKQGL---YRSDNHAWLFGWKKGSVFQAGPSTAMNWY 374
Query: 395 RYPNTG 400
+G
Sbjct: 375 YTSGSG 380
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 32.3 bits (73), Expect = 0.31
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 10/96 (10%)
Query: 321 YLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYR---YP 377
Y F N YL+ + + + ++ T WYR
Sbjct: 207 YYFDDKGNGEYLFTNTLDMST--NAFSTKNVAFNHDSSSFDHTVDGFLTADTWYRPKSIL 264
Query: 378 NTGCIWYRYPKTGYL-----WYRYPNTGYLWYRYSR 408
G W W+ N + + +
Sbjct: 265 ANGTTWRDSTDKDMRPLITVWWPNKNVQVNYLNFMK 300
Score = 27.7 bits (61), Expect = 8.2
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 5/80 (6%)
Query: 330 GYLWYRYPNTGYI---WYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRY 386
G L + P TG + ++Y G L ++ + G
Sbjct: 110 GTLQFFDPYTGEQLKGGVAKYD-DKLFYFESGKGNLVSTVAGDYQDGHYISQDGQ-TRYA 167
Query: 387 PKTGYLWYRYPNTGYLWYRY 406
K L +
Sbjct: 168 DKQNQLVKGLVTVNGALQYF 187
>1s7m_A HIA; adhesion, homotrimer, autotransporter, cell adhesion; 2.10A
{Haemophilus influenzae} SCOP: b.144.1.1
Length = 174
Score = 30.4 bits (67), Expect = 0.63
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 26 GTIVNV-PEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE 84
++ NV + + N+ AY GL N G +
Sbjct: 46 QSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGL-------TNLDEKGTDKQTPV 98
Query: 85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDF 127
A AA++ DL +SA++ + QV + + F
Sbjct: 99 VADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKF 141
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil,
cytoplasm, disease mutation, ectodermal dysplasia; 3.20A
{Human herpesvirus 8}
Length = 183
Score = 30.4 bits (68), Expect = 0.67
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 167 QILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHI 226
+ L ++ E L R L + +E L +M + ++H+
Sbjct: 48 RALKEEGRLTFPLLAECLFRAGRRDLLRDLLHLD-PRFLERHLAGTMSYFSPYQLTVLHV 106
Query: 227 TED 229
+
Sbjct: 107 DGE 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 30.9 bits (70), Expect = 0.75
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 36/153 (23%)
Query: 185 QAIARLALE--------------------KKTGARGLRAIMESLLLDSMYEVPGSDILMV 224
Q +LAL K T R L A++ + V ++ M+
Sbjct: 29 QEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMI 88
Query: 225 HITEDTVLKNTAPSYIRGI---VFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAA 281
+ N + + + E +GA+ + G + + G+L A A
Sbjct: 89 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISK-GEKAFEPGLL---ARAN 144
Query: 282 FGIVFLDEV----DKIGAVPGIHQLRDVGGEGV 310
G +++DE D I + L DV G
Sbjct: 145 RGYLYIDECNLLEDHI-----VDLLLDVAQSGE 172
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 30.4 bits (68), Expect = 1.1
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 323 FYRYPNTGYLWYRYPNTGYIWYRYPNTGYI-----------WYRYPNTGYLWTSYPNTGY 371
+ +TG + WY + TG + W+ ++G ++
Sbjct: 324 YQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTDSGASAKNWKKIDG 383
Query: 372 LWYRYPNTGCIWYRYPKTGYLWYRYPNTG 400
+WY + + + + WY G
Sbjct: 384 IWYYFNKENQMEIGWVQDKEQWYYLDVDG 412
Score = 29.7 bits (66), Expect = 2.1
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 326 YPNTGYLWYRYPNT-GYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWY 384
P + Y N N Y + N + P+ W+
Sbjct: 256 LPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWH 315
Query: 385 RYPKTGYLWYRYPNTGYLW 403
+ + + +TG
Sbjct: 316 KSAYGNWWYQAPDSTGEYA 334
Score = 29.3 bits (65), Expect = 2.6
Identities = 11/76 (14%), Positives = 20/76 (26%)
Query: 326 YPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYR 385
N Y + N + P+ W + + +TG
Sbjct: 277 RINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTGEYAVG 336
Query: 386 YPKTGYLWYRYPNTGY 401
+ + WY + TG
Sbjct: 337 WNEIEGEWYYFNQTGI 352
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 29.8 bits (66), Expect = 2.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 323 FYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNT 369
++ YPN G Y Y + Y + + ++ Y W + T
Sbjct: 176 YHNYPNKGLKDYTYTLSSNNPY-FNHPKNLFAAISTRQYNWNNILPT 221
Score = 29.0 bits (64), Expect = 3.1
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 333 WYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNT 379
++ YPN G Y Y + Y + + L+ + Y W T
Sbjct: 176 YHNYPNKGLKDYTYTLSSNNPY-FNHPKNLFAAISTRQYNWNNILPT 221
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 29.7 bits (67), Expect = 2.0
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 336 YPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYR 395
+ + + + +T TGY +++ + Y Y G +
Sbjct: 325 FHGSQIFFNADKGAVTVDRYLMDTPDKGD-GSLTGYNVWKWIDYDNYNYPYAGAGSPDFS 383
Query: 396 YPNTGYLWYRYS 407
++ RY+
Sbjct: 384 TN---WIILRYA 392
Score = 29.3 bits (66), Expect = 2.6
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 320 SYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNT 379
S +F+ RY TGY +++ + Y G +
Sbjct: 328 SQIFFNADKGAVTVDRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTN-- 385
Query: 380 GCIWYRY 386
I RY
Sbjct: 386 -WIILRY 391
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND
protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron}
SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Length = 527
Score = 29.4 bits (66), Expect = 2.3
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 304 DVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLW 363
++ + +++ T L + T + + + Y G
Sbjct: 312 NLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRK 371
Query: 364 -----TSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYS 407
S G ++ N YR YP+T +R +
Sbjct: 372 IQTDAISGFTDGLSIVKWQN-----YRSDGKPVSHATYPDTDIPLFRLA 415
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 29.6 bits (65), Expect = 2.5
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 324 YRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIW 383
Y G ++ N + + T ++ ++G L R+
Sbjct: 372 YTVRENGVVYNETTNKPTNYTINDKYEVLEGGKSLTVEQYSVDFDSGSLRERHNGKQVPM 431
Query: 384 YRYPKTGYLWYRYPNTGYLWYRYS 407
+ K ++ T Y+ S
Sbjct: 432 NVFYKDSL--FKVTPTNYIAMTTS 453
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous
to domain in soluble guanylyl CY transferase; 2.00A
{Nostoc punctiforme} PDB: 2p04_A
Length = 115
Score = 27.5 bits (61), Expect = 3.4
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 18 WKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTN-ILFVASGAYNGLDRLISR 69
+ + + + ++ +L+G+M+ I F+ S L
Sbjct: 58 FDAISKQPRALFILEFLHNGMQLKGQMMYQPEEEVIFFLGSPWITDTTSLAPL 110
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 28.8 bits (65), Expect = 3.7
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 226 ITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRD 263
+ + GI DE+ + I +L+
Sbjct: 149 HGVFAFNDTVSAATRVGIEARDEIKWLQRY--IDELKG 184
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
{Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A*
2x8p_A* 2vyu_A
Length = 311
Score = 28.2 bits (63), Expect = 5.1
Identities = 9/80 (11%), Positives = 17/80 (21%), Gaps = 3/80 (3%)
Query: 328 NTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCI---WY 384
Y + Y + N + T + WY G Y
Sbjct: 92 VLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSY 151
Query: 385 RYPKTGYLWYRYPNTGYLWY 404
G + + ++
Sbjct: 152 NPLPIGEVAKGWTQDFHVTI 171
Score = 27.8 bits (62), Expect = 5.6
Identities = 11/105 (10%), Positives = 18/105 (17%), Gaps = 14/105 (13%)
Query: 311 QQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYI----------WYRYPNTG 360
+ K Y + Y + N + WY G
Sbjct: 85 LEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLG 144
Query: 361 YL----WTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGY 401
+ P + WY +G
Sbjct: 145 NFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGK 189
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 69 RRKNEKYLGFGAPSTESAGRRAASLADLANQS----------AAVSAEEDNKEKD-AFLK 117
R + K L ++ + A + + +N+ D AF +
Sbjct: 91 REEQRKRL---QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 118 QVEARDLI 125
Q +A D+I
Sbjct: 148 QPDA-DII 154
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A
{Clostridium difficile}
Length = 127
Score = 27.0 bits (60), Expect = 6.6
Identities = 10/72 (13%), Positives = 17/72 (23%)
Query: 333 WYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYL 392
+Y PNT Y + + N + Y P +
Sbjct: 1 YYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIEGQAIRY 60
Query: 393 WYRYPNTGYLWY 404
R+ + Y
Sbjct: 61 QNRFLHLLGNIY 72
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 27.6 bits (62), Expect = 7.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 14/46 (30%)
Query: 233 KNTAPSYIRGIVFLDEVDKIGAVPGIHQLR-DVGGEG---VQQGML 274
K APS I+F+DE+D I A R D G VQ+ ++
Sbjct: 107 KEKAPS----IIFIDEIDAIAAK------RTDALTGGDREVQRTLM 142
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
difficile}
Length = 332
Score = 27.5 bits (61), Expect = 7.9
Identities = 7/77 (9%), Positives = 19/77 (24%), Gaps = 5/77 (6%)
Query: 333 WYRYPNTGYIWYRYPNTGYIWYRYPNTGYL---WTSYPNTGYLWYRYPNTGCIWYRYPKT 389
+ + + + Y + + + G + PN Y P +
Sbjct: 4 SHHHHHHHHASTGYTSINGKHFYFNTDGIMQIGVFKGPNGFE--YFAPANTDANNIEGQA 61
Query: 390 GYLWYRYPNTGYLWYRY 406
++ Y +
Sbjct: 62 ILYQNKFLTLNGKKYYF 78
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 27.7 bits (62), Expect = 8.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 226 ITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGG 266
T+DT P Y I F D+ V I +L+
Sbjct: 146 TTDDTAKI-GNPEYFTDIEFRKPADEAKLV--IQELQQTEK 183
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 27.5 bits (61), Expect = 8.4
Identities = 7/69 (10%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 231 VLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEV 290
+++ +F++++D G V + V ++ + V L +
Sbjct: 94 IIRKGNMC----CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI--ADNPTNVQLPGM 147
Query: 291 DKIGAVPGI 299
+
Sbjct: 148 YNKQENARV 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,540,968
Number of extensions: 418276
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 91
Length of query: 408
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,021,377
Effective search space: 1254669624
Effective search space used: 1254669624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)