RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11091
(408 letters)
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 156 bits (395), Expect = 1e-44
Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 24/221 (10%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
LL ++EG++VN+P K + G +Q+DT++ILF+ +GA++GL +I +R + LGF
Sbjct: 167 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 226
Query: 80 APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
+ KE++A L V+ DL+ +G+IPE +GR P+
Sbjct: 227 QE------------------------KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPV 262
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
L S++ E +V IL +PKNA+I+QYQ LF MD+VDL F EA++ IA+LALE+KTGAR
Sbjct: 263 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 322
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
GLRAI+E LD M+++P V IT+D VLK P I
Sbjct: 323 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 363
Score = 40.2 bits (93), Expect = 3e-04
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 189 RLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHIT--EDTVLKNTAPSYIRGIVFL 246
RL+ ++K + + L E+ S+IL++ T T++ T ++ + +
Sbjct: 39 RLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--IPI 96
Query: 247 DEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSAL--AAFGIVFLDEVDKIGAVPGIHQL-R 303
D + DV + + A GIVF+DE+DKI + + R
Sbjct: 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR 156
Query: 304 DVGGEGVQQGMLKV 317
DV GEGVQQ +LK+
Sbjct: 157 DVSGEGVQQALLKI 170
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 154 bits (390), Expect = 4e-43
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 8/199 (4%)
Query: 44 MVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAV 103
++ I V +D + K +Y G G + L + + +
Sbjct: 236 PEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADV---SREGVQRDLLPLVEGSTVST 292
Query: 104 SAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMI 163
+ F+ + +IPE GR PI V +L+ RILTEP ++
Sbjct: 293 KHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 352
Query: 164 QQYQILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPG 218
+QY+ L + V++ F+ +A++ IA A + GAR L +ME L+ +
Sbjct: 353 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD 412
Query: 219 SDILMVHITEDTVLKNTAP 237
+ V+I V
Sbjct: 413 MNGQTVNIDAAYVADALGE 431
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 81.0 bits (199), Expect = 9e-18
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
+IPE GR PI V +L+ RILTEP ++ +QY+ L + V++ F+ +A++ IA
Sbjct: 184 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 243
Query: 189 RLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAP 237
A + GAR L +ME L+ + + V+I V
Sbjct: 244 EAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 297
Score = 35.6 bits (81), Expect = 0.008
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 241 RGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 276
GIVF+DE+DKI G + DV EGVQ+ +L +
Sbjct: 116 NGIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPL 150
Score = 34.8 bits (79), Expect = 0.016
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 283 GIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKV 317
GIVF+DE+DKI G + DV EGVQ+ +L +
Sbjct: 117 GIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPL 150
Score = 33.3 bits (75), Expect = 0.050
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 11/42 (26%)
Query: 20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYN 61
LL ++EG+ V+ K+ V T +ILF+ASGA+
Sbjct: 147 LLPLVEGSTVST--KH---------GMVKTDHILFIASGAFQ 177
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 60.6 bits (146), Expect = 7e-11
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
PEF R ++ F L+ +++ +++ + I + Q+ V L S EA +A
Sbjct: 200 FTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQVQLDQKGVSLEVSQEARNWLA 255
Query: 189 RLALEKKTGARGLRAIMESLLLDSM 213
++ GAR + +++ L +
Sbjct: 256 EKGYDRAMGARPMARVIQDNLKKPL 280
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 54.3 bits (130), Expect = 8e-09
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 129 MIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIA 188
PEF+ R +V F L + + + + + ++ L + A +A
Sbjct: 205 FRPEFLNRLDEIVVFRPLTK----EQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLA 260
Query: 189 RLALEKKTGARGLRAIMESLLLDSMYE 215
+ GAR LR +++ L + +
Sbjct: 261 ERGYDPVFGARPLRRVIQRELETPLAQ 287
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 50.1 bits (118), Expect = 1e-07
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 49 TTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEED 108
I F+ SG+ GL R ++ + FG + + + + A + +E
Sbjct: 167 LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR--EEAIEFLRRGFQEA 224
Query: 109 NKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQI 168
+ + + E G IP ++ F + + + + L K ++++++
Sbjct: 225 DIDFKDYEVVYEK-----IGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFEN 279
Query: 169 LF 170
Sbjct: 280 FL 281
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 35.3 bits (80), Expect = 0.010
Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 115 FLKQVEARDLIDFGMIPEFVGRFPILVPFH--SLNQELLVRILTEPKNAMIQQYQILFTM 172
+ + + +P + +L++ L + ++ L++
Sbjct: 158 YETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI----RLYNREGVKLYSS 213
Query: 173 DKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVP 217
+ E L+ + K L I + ++L+ E P
Sbjct: 214 LETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETP 258
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 113
Score = 29.9 bits (66), Expect = 0.21
Identities = 10/97 (10%), Positives = 19/97 (19%), Gaps = 6/97 (6%)
Query: 310 VQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNT 369
V +G + + F W+R + + +
Sbjct: 12 VPEGE-NLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSG 70
Query: 370 GYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRY 406
R YL P +G +
Sbjct: 71 -----RSTLYIAASQPGDSATYLCAVRPTSGGSYIPT 102
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 30.5 bits (67), Expect = 0.29
Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 123 DLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPE 182
+ + +P + + + + + D + P
Sbjct: 175 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR 234
Query: 183 ALQAIARLALEKKTGARGLRAIMESLL 209
L+ I+ + + G G L
Sbjct: 235 HLELISDVY-GEDKGGDGSARRAIVAL 260
>d1s7ma_ b.144.1.1 (A:) Autotransporter Hia {Haemophilus influenzae
[TaxId: 727]}
Length = 158
Score = 29.2 bits (65), Expect = 0.59
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 58 GAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLK 117
AY GL L +EK G + A AA++ DL +SA++ +
Sbjct: 72 DAYKGLTNL-----DEK--GTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHD 124
Query: 118 QVEARDLIDF 127
QV + + F
Sbjct: 125 QVRNANEVKF 134
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 29.4 bits (66), Expect = 0.70
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 228 EDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGV 269
E+T+++ T + G + D+V+ + + IH LR GG +
Sbjct: 206 EETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFNL 247
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
gammarus) [TaxId: 6707]}
Length = 181
Score = 28.6 bits (63), Expect = 0.87
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 327 PNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLW 373
+L Y N+ T Y Y + + ++ + +
Sbjct: 88 FGEPHLSIDYENSFAAPLVILETDYSNYACLYSCIDYNFGYHSDFSF 134
>d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain
{Bacteriophage Psa [TaxId: 171618]}
Length = 134
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 368 NTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWY 404
N+G + + P T WY K GYL Y G WY
Sbjct: 93 NSGKIKWYSPGTKLSWYDNKK-GYLELWYEKDG--WY 126
Score = 27.7 bits (61), Expect = 1.2
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 338 NTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPN 378
N+G I + P T WY GYL Y G WY N
Sbjct: 93 NSGKIKWYSPGTKLSWYDN-KKGYLELWYEKDG--WYYTAN 130
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 109
Score = 27.3 bits (59), Expect = 1.4
Identities = 8/72 (11%), Positives = 15/72 (20%), Gaps = 4/72 (5%)
Query: 336 YPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYR 395
P T +W + Y + Y+ G L
Sbjct: 22 GPKTECVWTLQVDPKYKLL---VSIPTLNLTCGKEYVEVLEGAPGSK-SLGKFCEGLSIL 77
Query: 396 YPNTGYLWYRYS 407
+ + +Y
Sbjct: 78 NRGSSGMTVKYK 89
Score = 26.1 bits (56), Expect = 3.2
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 4/71 (5%)
Query: 326 YPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYR 385
P T +W + Y + Y+ G +
Sbjct: 22 GPKTECVWTLQVDPKYKLL---VSIPTLNLTCGKEYVEVLEGAPGSK-SLGKFCEGLSIL 77
Query: 386 YPKTGYLWYRY 396
+ + +Y
Sbjct: 78 NRGSSGMTVKY 88
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.8 bits (61), Expect = 1.8
Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 321 YLFYRYPN---------TGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGY 371
Y R+ + T R + + N ++ +T P
Sbjct: 35 YEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA 94
Query: 372 LWYRYPNTGC----IWYRYPKTGYLWYRYPNTGYLWY 404
L + + + + P+ YLW
Sbjct: 95 LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWI 131
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.2 bits (62), Expect = 1.9
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 149 ELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLAL 192
+LL + NA ++L ++ D + E + +A LA
Sbjct: 383 DLLYAMCDR-SNAQQIVAEMLSYLETADYSIREEIVLKVAILAE 425
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 27.8 bits (62), Expect = 2.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 228 EDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGG 266
ED + + T I G + ++ + + V IH+LR + G
Sbjct: 205 EDDLKERTTIYRIDGTPYREDEELLQVVQRIHELRTLAG 243
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 27.8 bits (61), Expect = 2.6
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 354 YRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRY-------PNTGYLWYRY 406
+R P+TG L+ + + + ++P+ + + P + + R
Sbjct: 63 FRSPSTG-LYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRL 121
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 27.6 bits (60), Expect = 3.7
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 6/58 (10%)
Query: 349 TGYIWYRYPNT--GYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWY 404
G + GY + G Y+ R+ + G + Y
Sbjct: 356 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA----RWLSDGNIEY 409
>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
coli, type IIB [TaxId: 562]}
Length = 223
Score = 26.8 bits (59), Expect = 4.3
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 333 WYRYPNTGYIWYRYPNTGYIWYRYPNT 359
WYR + N Y +
Sbjct: 125 WYRVSFGAIEGGMHRNRDYRRDLFRGL 151
Score = 25.6 bits (56), Expect = 9.3
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 343 WYRYPNTGYIWYRYPNTGYLWTSYPNT 369
WYR + N Y +
Sbjct: 125 WYRVSFGAIEGGMHRNRDYRRDLFRGL 151
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 26.3 bits (58), Expect = 5.7
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 228 EDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGG 266
+ K T + + F D+ + + V I R G
Sbjct: 205 SEEAAKRTTIYRVDNVAFRDDAEVVEWVHRIFDQRTKFG 243
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 26.5 bits (57), Expect = 7.2
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 350 GYIWYRYPNT--GYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWY 394
G++ R P T GY N R + GY+
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
>d1umra_ d.169.1.1 (A:) Snake coagglutinin alpha chain {South
american rattlesnake (Crotalus durissus terrificus),
convulxin [TaxId: 8732]}
Length = 135
Score = 25.5 bits (54), Expect = 9.1
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 6/98 (6%)
Query: 307 GEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSY 366
+G +K + F + T + + + ++ + + SY
Sbjct: 36 AKGAHLVSIKSAKEADFVAWMVTQNIEESFSHVSIGLRVQNKEKQCSTKWSDGSSV--SY 93
Query: 367 PNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWY 404
N T C + W+ G + +
Sbjct: 94 DN----LLDLYITKCSLLKKETGFRKWFVASCIGKIPF 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,589,784
Number of extensions: 78031
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 55
Length of query: 408
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,213,086
Effective search space: 389400606
Effective search space used: 389400606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)